@ohif/mode-tmtv 3.0.0

package/LICENSE

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+MIT License
+
+Copyright (c) 2018 Open Health Imaging Foundation
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/README.md

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+# Total Metabolic Tumor Volume
+
+## Introduction
+
+Total Metabolic Tumor Volume (TMTV) workflow mode enables quantitatively measurement of a tumor volume in a patient's body.
+This mode is accessible in any study that has a PT and CT image series as you can see below
+
+
+![modeValid](https://user-images.githubusercontent.com/7490180/171256138-7a948654-6836-460c-817a-fa9a1929926b.png)
+
+Note: If the study does not have a PT and CT image series, the TMTV workflow mode will not be available
+and will become grayed out.
+
+## Layout
+The designed layout for the viewports follows a predefined hanging protocol which will place
+10 viewports containing CT, PT, Fusion and Maximum Intensity Projection (MIP) PT scenes.
+
+The hanging protocol will match the CT and PT displaySets based on series description. In terms
+of PT displaySets, the hanging protocol will match the PT displaySet that has attenuated
+corrected PET image data.
+
+As seen in the image below, the first row contains CT volume in 3 different views of Axial,
+Sagittal and Coronal. The second row contains PT volume in the same views as the first row.
+The last row contains the fusion volume and the viewport to the right is a MIP of the PT
+Volume in the Sagittal view.
+
+
+
+![modeLayout](https://user-images.githubusercontent.com/7490180/171256159-1e94edac-985f-4de3-8759-27a077541f8f.png)
+
+## Synchronization
+
+The viewports in the 3 rows are synchronized both for the Camera and WindowLevel.
+It means that when you interact with the CT viewport (pan, zoom, scroll),
+the PT and Fusion viewports will be synchronized to the same view. In addition
+to camera synchronization, the window level of the CT viewport will be synchronized
+with the fusion viewport.
+
+
+### MIP
+The tools that are activated on each viewport is unique to its data. For instance,
+the mouse scroll tool for PT, CT and Fusion viewports are scrolling through the image data
+(in different directions); however, the mouse scroll tool for the MIP viewport will
+rotate the camera to match the usecase for the MIP.
+
+
+## Panels
+There are two panels that are available in the TMTV workflow mode and we will
+discuss them in detail below.
+
+### SUV Panel
+This panel shows the PT metadata derived from the matched PT displaySet. The user
+can edit/change the metadata if needed, and by reloading the data the new
+metadata will be applied to the PT volume.
+
+
+## ROI Threshold Panel
+The ROI Threshold panel is a panel that allows the user to use the `RectangleROIStartEnd`
+tool from Cornerstone to define and edit a region of interest. Then, the user can
+apply a threshold to the pixels in the ROI and save the result as a segmentation volume.
+
+By applying each threshold to the ROI, the Total Metabolic Tumor Volume (TMTV), and
+the SUV Peak values will get calculated for the labelmap segments and shown in the
+panel.
+
+
+## Export Report
+
+Finally, the results can be saved in the CSV format. The RectangleROI annotations
+can also be extracted as a dicom RT Structure Set and saved as a DICOM file.
+
+
+## Video Tutorial
+
+Below you can see a video tutorial on how to use the TMTV workflow mode.
+
+
+https://user-images.githubusercontent.com/7490180/171065443-35369fba-e955-48ac-94da-d262e0fccb6b.mp4

package/dist/ohif-mode-tmtv.umd.js

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+!function(o,e){"object"==typeof exports&&"object"==typeof module?module.exports=e(require("@ohif/core"),require("@ohif/ui")):"function"==typeof define&&define.amd?define(["@ohif/core","@ohif/ui"],e):"object"==typeof exports?exports["ohif-mode-tmtv"]=e(require("@ohif/core"),require("@ohif/ui")):o["ohif-mode-tmtv"]=e(o["@ohif/core"],o["@ohif/ui"])}(globalThis,((o,e)=>(()=>{"use strict";var t={762:e=>{e.exports=o},369:o=>{o.exports=e}},n={};function i(o){var e=n[o];if(void 0!==e)return e.exports;var s=n[o]={exports:{}};return t[o](s,s.exports,i),s.exports}i.d=(o,e)=>{for(var t in e)i.o(e,t)&&!i.o(o,t)&&Object.defineProperty(o,t,{enumerable:!0,get:e[t]})},i.o=(o,e)=>Object.prototype.hasOwnProperty.call(o,e);var s={};return(()=>{i.d(s,{default:()=>A});var o=i(762),e=i(369);const t={CT:"ctToolGroup",PT:"ptToolGroup",Fusion:"fusionToolGroup",MIP:"mipToolGroup",default:"default"};const n=function(o,e,n,i){!function(o,e,n,i){const s={active:[{toolName:o.WindowLevel,bindings:[{mouseButton:e.MouseBindings.Primary}]},{toolName:o.Pan,bindings:[{mouseButton:e.MouseBindings.Auxiliary}]},{toolName:o.Zoom,bindings:[{mouseButton:e.MouseBindings.Secondary}]},{toolName:o.StackScrollMouseWheel,bindings:[]}],passive:[{toolName:o.Length},{toolName:o.ArrowAnnotate},{toolName:o.Bidirectional},{toolName:o.DragProbe},{toolName:o.Probe},{toolName:o.EllipticalROI},{toolName:o.RectangleROI},{toolName:o.StackScroll},{toolName:o.Angle},{toolName:o.CobbAngle},{toolName:o.Magnify}],enabled:[{toolName:o.SegmentationDisplay}],disabled:[{toolName:o.Crosshairs}]},l={[o.Crosshairs]:{viewportIndicators:!1,autoPan:{enabled:!1,panSize:10}},[o.ArrowAnnotate]:{getTextCallback:(o,e)=>{i.runCommand("arrowTextCallback",{callback:o,eventDetails:e})},changeTextCallback:(o,e,t)=>i.runCommand("arrowTextCallback",{callback:t,data:o,eventDetails:e})}};n.createToolGroupAndAddTools(t.CT,s,l),n.createToolGroupAndAddTools(t.PT,{active:s.active,passive:[...s.passive,{toolName:"RectangleROIStartEndThreshold"}],enabled:s.enabled,disabled:s.disabled},l),n.createToolGroupAndAddTools(t.Fusion,s,l),n.createToolGroupAndAddTools(t.default,s,l);const a={active:[{toolName:o.VolumeRotateMouseWheel},{toolName:o.MipJumpToClick,bindings:[{mouseButton:e.MouseBindings.Primary}]}],enabled:[{toolName:o.SegmentationDisplay}]},r={[o.VolumeRotateMouseWheel]:{rotateIncrementDegrees:.1},[o.MipJumpToClick]:{targetViewportIds:["ptAXIAL","ptCORONAL","ptSAGITTAL"]}};n.createToolGroupAndAddTools(t.MIP,a,r)}(o,e,n,i)},{windowLevelPresets:l}=o.defaults;function a(o,e,t,n,i,s){return{id:e,icon:t,label:n,type:o,commands:i,tooltip:s}}function r(o,e){return{id:o.toString(),title:o,subtitle:o,type:"action",commands:[{commandName:"setFusionPTColormap",commandOptions:{toolGroupId:t.Fusion,colormap:e}},{commandName:"setFusionPTColormap",commandOptions:{toolGroupId:t.Fusion,colormap:e}}]}}a.bind(null,"action"),a.bind(null,"toggle");const d=a.bind(null,"tool");function c(o,e,t){return{id:o.toString(),title:e,subtitle:t,type:"action",commands:[{commandName:"setWindowLevel",commandOptions:{...l[o]},context:"CORNERSTONE"}]}}function u(o,e,t){return t.map((t=>({commandName:o,commandOptions:{toolName:e,toolGroupId:t},context:"CORNERSTONE"})))}const m=[{id:"MeasurementTools",type:"ohif.splitButton",props:{groupId:"MeasurementTools",isRadio:!0,primary:d("Length","tool-length","Length",[...u("setToolActive","Length",[t.CT,t.PT,t.Fusion])],"Length"),secondary:{icon:"chevron-down",label:"",isActive:!0,tooltip:"More Measure Tools"},items:[d("Length","tool-length","Length",[...u("setToolActive","Length",[t.CT,t.PT,t.Fusion])],"Length Tool"),d("Bidirectional","tool-bidirectional","Bidirectional",[...u("setToolActive","Bidirectional",[t.CT,t.PT,t.Fusion])],"Bidirectional Tool"),d("ArrowAnnotate","tool-annotate","Annotation",[...u("setToolActive","ArrowAnnotate",[t.CT,t.PT,t.Fusion])],"Arrow Annotate"),d("EllipticalROI","tool-elipse","Ellipse",[...u("setToolActive","EllipticalROI",[t.CT,t.PT,t.Fusion])],"Ellipse Tool"),d("CircleROI","tool-circle","Circle",[...u("setToolActive","CircleROI",[t.CT,t.PT,t.Fusion])],"Circle 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40")]}},{id:"Crosshairs",type:"ohif.radioGroup",props:{type:"tool",icon:"tool-crosshair",label:"Crosshairs",commands:[...u("setToolActive","Crosshairs",[t.CT,t.PT,t.Fusion])]}},{id:"Pan",type:"ohif.radioGroup",props:{type:"tool",icon:"tool-move",label:"Pan",commands:[...u("setToolActive","Pan",[t.CT,t.PT,t.Fusion])]}},{id:"RectangleROIStartEndThreshold",type:"ohif.radioGroup",props:{type:"tool",icon:"tool-create-threshold",label:"Rectangle ROI Threshold",commands:[...u("setToolActive","RectangleROIStartEndThreshold",[t.PT]),{commandName:"displayNotification",commandOptions:{title:"RectangleROI Threshold Tip",text:"RectangleROI Threshold tool should be used on PT Axial Viewport",type:"info"}},{commandName:"setViewportActive",commandOptions:{viewportId:"ptAXIAL"}}]}},{id:"fusionPTColormap",type:"ohif.splitButton",props:{groupId:"fusionPTColormap",primary:d("fusionPTColormap","tool-fusion-color","Fusion PT Colormap",[],"Fusion PT Colormap"),secondary:{icon:"chevron-down",label:"PT Colormap",isActive:!0,tooltip:"PET Image Colormap"},isAction:!0,renderer:e.WindowLevelMenuItem,items:[r("HSV","hsv"),r("Hot Iron","hot_iron"),r("S PET","s_pet"),r("Red Hot","red_hot"),r("Perfusion","perfusion"),r("Rainbow","rainbow_2"),r("SUV","suv"),r("GE 256","ge_256"),r("GE","ge"),r("Siemens","siemens")]}}],p=JSON.parse('{"u2":"@ohif/mode-tmtv"}').u2;const{MetadataProvider:T}=o.classes,g="@ohif/extension-default.layoutTemplateModule.viewerLayout",h="@ohif/extension-default.sopClassHandlerModule.stack",v="@ohif/extension-cornerstone.viewportModule.cornerstone",f="@ohif/extension-tmtv.hangingProtocolModule.ptCT",y="@ohif/extension-tmtv.panelModule.petSUV",C="@ohif/extension-tmtv.panelModule.ROIThresholdSeg",I={"@ohif/extension-default":"^3.0.0","@ohif/extension-cornerstone":"^3.0.0","@ohif/extension-tmtv":"^3.0.0"};let b=[];const A={id:p,modeFactory:function(e){let{modeConfiguration:i}=e;return{id:p,routeName:"tmtv",displayName:"Total Metabolic Tumor Volume",onModeEnter:o=>{let{servicesManager:e,extensionManager:i,commandsManager:s}=o;const{toolbarService:l,toolGroupService:a,hangingProtocolService:r,displaySetService:d}=e.services,c=i.getModuleEntry("@ohif/extension-cornerstone.utilityModule.tools"),{toolNames:u,Enums:p}=c.exports;n(u,p,a,s);const{unsubscribe:g}=a.subscribe(a.EVENTS.VIEWPORT_ADDED,(()=>{const{displaySetMatchDetails:o}=r.getMatchDetails();!function(o,e,n,i){const s=o.get("ctDisplaySet");if(!s)return;const{SeriesInstanceUID:l}=s,a=i.getDisplaySetsForSeries(l),r={...n.getToolConfiguration(t.Fusion,e.Crosshairs),filterActorUIDsToSetSlabThickness:[a[0].displaySetInstanceUID]};n.setToolConfiguration(t.Fusion,e.Crosshairs,r)}(o,u,a,d),function(o,e,n,i){const s=o.get("ptDisplaySet");if(!s)return;const{SeriesInstanceUID:l}=s,a=i.getDisplaySetsForSeries(l);if(!a||0===a.length)return;const r=n.getToolConfiguration(t.Fusion,e.WindowLevel),d=n.getToolConfiguration(t.Fusion,e.EllipticalROI),c=`cornerstoneStreamingImageVolume:${a[0].displaySetInstanceUID}`,u={...r,volumeId:c},m={...d,volumeId:c};n.setToolConfiguration(t.Fusion,e.WindowLevel,u),n.setToolConfiguration(t.Fusion,e.EllipticalROI,m)}(o,u,a,d),l.recordInteraction({groupId:"WindowLevel",itemId:"WindowLevel",interactionType:"tool",commands:[{commandName:"setToolActive",commandOptions:{toolName:u.WindowLevel,toolGroupId:t.CT},context:"CORNERSTONE"},{commandName:"setToolActive",commandOptions:{toolName:u.WindowLevel,toolGroupId:t.PT},context:"CORNERSTONE"},{commandName:"setToolActive",commandOptions:{toolName:u.WindowLevel,toolGroupId:t.Fusion},context:"CORNERSTONE"}]})}));b.push(g),l.init(i),l.addButtons(m),l.createButtonSection("primary",["MeasurementTools","Zoom","WindowLevel","Crosshairs","Pan","RectangleROIStartEndThreshold","fusionPTColormap"]),r.addCustomAttribute("getPTVOIRange","get PT VOI based on corrected or not",(o=>{const e=o.find((o=>"PT"===o.Modality));if(!e)return;const{imageId:t}=e.images[0],n=T.get("scalingModule",t);return n&&n.suvbw?{windowWidth:5,windowCenter:2.5}:void 0}))},onModeExit:o=>{let{servicesManager:e}=o;const{toolGroupService:t,syncGroupService:n,segmentationService:i,cornerstoneViewportService:s}=e.services;b.forEach((o=>o())),t.destroy(),n.destroy(),i.destroy(),s.destroy()},validationTags:{study:[],series:[]},isValidMode:o=>{let{modalities:e,study:t}=o;const n=e.split("\\");return n.includes("CT")&&n.includes("PT")&&!["SM"].some((o=>n.includes(o)))&&"1.3.6.1.4.1.12842.1.1.14.3.20220915.105557.468.2963630849"!==t.studyInstanceUid},routes:[{path:"tmtv",layoutTemplate:o=>{let{location:e,servicesManager:t}=o;return{id:g,props:{rightPanels:[C,y],viewports:[{namespace:v,displaySetsToDisplay:[h]}]}}}}],extensions:I,hangingProtocol:f,sopClassHandlers:[h],hotkeys:[...o.hotkeys.defaults.hotkeyBindings]}},extensionDependencies:I}})(),s=s.default})()));
+//# sourceMappingURL=ohif-mode-tmtv.umd.js.map

package/dist/ohif-mode-tmtv.umd.js.map

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define getter functions for harmony exports\n__webpack_require__.d = (exports, definition) => {\n\tfor(var key in definition) {\n\t\tif(__webpack_require__.o(definition, key) && !__webpack_require__.o(exports, key)) {\n\t\t\tObject.defineProperty(exports, key, { enumerable: true, get: definition[key] });\n\t\t}\n\t}\n};","__webpack_require__.o = (obj, prop) => (Object.prototype.hasOwnProperty.call(obj, prop))","export const toolGroupIds = {\n  CT: 'ctToolGroup',\n  PT: 'ptToolGroup',\n  Fusion: 'fusionToolGroup',\n  MIP: 'mipToolGroup',\n  default: 'default',\n  // MPR: 'mpr',\n};\n\nfunction _initToolGroups(toolNames, Enums, toolGroupService, commandsManager) {\n  const tools = {\n    active: [\n      {\n        toolName: toolNames.WindowLevel,\n        bindings: [{ mouseButton: Enums.MouseBindings.Primary }],\n      },\n      {\n        toolName: toolNames.Pan,\n        bindings: [{ mouseButton: Enums.MouseBindings.Auxiliary }],\n      },\n      {\n        toolName: toolNames.Zoom,\n        bindings: [{ mouseButton: Enums.MouseBindings.Secondary }],\n      },\n      { toolName: toolNames.StackScrollMouseWheel, bindings: [] },\n    ],\n    passive: [\n      { toolName: toolNames.Length },\n      { toolName: toolNames.ArrowAnnotate },\n      { toolName: toolNames.Bidirectional },\n      { toolName: toolNames.DragProbe },\n      { toolName: toolNames.Probe },\n      { toolName: toolNames.EllipticalROI },\n      { toolName: toolNames.RectangleROI },\n      { toolName: toolNames.StackScroll },\n      { toolName: toolNames.Angle },\n      { toolName: toolNames.CobbAngle },\n      { toolName: toolNames.Magnify },\n    ],\n    enabled: [{ toolName: toolNames.SegmentationDisplay }],\n    disabled: [{ toolName: toolNames.Crosshairs }],\n  };\n\n  const toolsConfig = {\n    [toolNames.Crosshairs]: {\n      viewportIndicators: false,\n      autoPan: {\n        enabled: false,\n        panSize: 10,\n      },\n    },\n    [toolNames.ArrowAnnotate]: {\n      getTextCallback: (callback, eventDetails) => {\n        commandsManager.runCommand('arrowTextCallback', {\n          callback,\n          eventDetails,\n        });\n      },\n\n      changeTextCallback: (data, eventDetails, callback) =>\n        commandsManager.runCommand('arrowTextCallback', {\n          callback,\n          data,\n          eventDetails,\n        }),\n    },\n  };\n\n  toolGroupService.createToolGroupAndAddTools(\n    toolGroupIds.CT,\n    tools,\n    toolsConfig\n  );\n  toolGroupService.createToolGroupAndAddTools(\n    toolGroupIds.PT,\n    {\n      active: tools.active,\n      passive: [\n        ...tools.passive,\n        { toolName: 'RectangleROIStartEndThreshold' },\n      ],\n      enabled: tools.enabled,\n      disabled: tools.disabled,\n    },\n    toolsConfig\n  );\n  toolGroupService.createToolGroupAndAddTools(\n    toolGroupIds.Fusion,\n    tools,\n    toolsConfig\n  );\n  toolGroupService.createToolGroupAndAddTools(\n    toolGroupIds.default,\n    tools,\n    toolsConfig\n  );\n\n  const mipTools = {\n    active: [\n      {\n        toolName: toolNames.VolumeRotateMouseWheel,\n      },\n      {\n        toolName: toolNames.MipJumpToClick,\n        bindings: [{ mouseButton: Enums.MouseBindings.Primary }],\n      },\n    ],\n    enabled: [{ toolName: toolNames.SegmentationDisplay }],\n  };\n\n  const mipToolsConfig = {\n    [toolNames.VolumeRotateMouseWheel]: {\n      rotateIncrementDegrees: 0.1,\n    },\n    [toolNames.MipJumpToClick]: {\n      targetViewportIds: ['ptAXIAL', 'ptCORONAL', 'ptSAGITTAL'],\n    },\n  };\n\n  toolGroupService.createToolGroupAndAddTools(\n    toolGroupIds.MIP,\n    mipTools,\n    mipToolsConfig\n  );\n}\n\nfunction initMPRToolGroup(toolNames, Enums, toolGroupService, commandsManager) {\n  const tools = {\n    active: [\n      {\n        toolName: toolNames.WindowLevel,\n        bindings: [{ mouseButton: Enums.MouseBindings.Primary }],\n      },\n      {\n        toolName: toolNames.Pan,\n        bindings: [{ mouseButton: Enums.MouseBindings.Auxiliary }],\n      },\n      {\n        toolName: toolNames.Zoom,\n        bindings: [{ mouseButton: Enums.MouseBindings.Secondary }],\n      },\n      { toolName: toolNames.StackScrollMouseWheel, bindings: [] },\n    ],\n    passive: [\n      { toolName: toolNames.Length },\n      { toolName: toolNames.ArrowAnnotate },\n      { toolName: toolNames.Bidirectional },\n      { toolName: toolNames.DragProbe },\n      { toolName: toolNames.EllipticalROI },\n      { toolName: toolNames.RectangleROI },\n      { toolName: toolNames.StackScroll },\n      { toolName: toolNames.Angle },\n      { toolName: toolNames.CobbAngle },\n      { toolName: toolNames.SegmentationDisplay },\n    ],\n    disabled: [{ toolName: toolNames.Crosshairs }],\n\n    // enabled\n    // disabled\n  };\n\n  const toolsConfig = {\n    [toolNames.Crosshairs]: {\n      viewportIndicators: false,\n      autoPan: {\n        enabled: false,\n        panSize: 10,\n      },\n    },\n    [toolNames.ArrowAnnotate]: {\n      getTextCallback: (callback, eventDetails) =>\n        commandsManager.runCommand('arrowTextCallback', {\n          callback,\n          eventDetails,\n        }),\n\n      changeTextCallback: (data, eventDetails, callback) =>\n        commandsManager.runCommand('arrowTextCallback', {\n          callback,\n          data,\n          eventDetails,\n        }),\n    },\n  };\n\n  toolGroupService.createToolGroupAndAddTools('mpr', tools, toolsConfig);\n}\n\nfunction initToolGroups(toolNames, Enums, toolGroupService, commandsManager) {\n  _initToolGroups(toolNames, Enums, toolGroupService, commandsManager);\n  // initMPRToolGroup(toolNames, Enums, toolGroupService, commandsManager);\n}\n\nexport default initToolGroups;\n","// TODO: torn, can either bake this here; or have to create a whole new button type\n// Only ways that you can pass in a custom React component for render :l\nimport { WindowLevelMenuItem } from '@ohif/ui';\nimport { defaults } from '@ohif/core';\nimport { toolGroupIds } from './initToolGroups';\nconst { windowLevelPresets } = defaults;\n/**\n *\n * @param {*} type - 'tool' | 'action' | 'toggle'\n * @param {*} id\n * @param {*} icon\n * @param {*} label\n */\nfunction _createButton(type, id, icon, label, commands, tooltip) {\n  return {\n    id,\n    icon,\n    label,\n    type,\n    commands,\n    tooltip,\n  };\n}\n\nfunction _createColormap(label, colormap) {\n  return {\n    id: label.toString(),\n    title: label,\n    subtitle: label,\n    type: 'action',\n    commands: [\n      {\n        commandName: 'setFusionPTColormap',\n        commandOptions: {\n          toolGroupId: toolGroupIds.Fusion,\n          colormap,\n        },\n      },\n      {\n        commandName: 'setFusionPTColormap',\n        commandOptions: {\n          toolGroupId: toolGroupIds.Fusion,\n          colormap,\n        },\n      },\n    ],\n  };\n}\n\nconst _createActionButton = _createButton.bind(null, 'action');\nconst _createToggleButton = _createButton.bind(null, 'toggle');\nconst _createToolButton = _createButton.bind(null, 'tool');\n\n/**\n *\n * @param {*} preset - preset number (from above import)\n * @param {*} title\n * @param {*} subtitle\n */\nfunction _createWwwcPreset(preset, title, subtitle) {\n  return {\n    id: preset.toString(),\n    title,\n    subtitle,\n    type: 'action',\n    commands: [\n      {\n        commandName: 'setWindowLevel',\n        commandOptions: {\n          ...windowLevelPresets[preset],\n        },\n        context: 'CORNERSTONE',\n      },\n    ],\n  };\n}\n\nfunction _createCommands(commandName, toolName, toolGroupIds) {\n  return toolGroupIds.map(toolGroupId => ({\n    /* It's a command that is being run when the button is clicked. */\n    commandName,\n    commandOptions: {\n      toolName,\n      toolGroupId,\n    },\n    context: 'CORNERSTONE',\n  }));\n}\n\nconst toolbarButtons = [\n  // Measurement\n  {\n    id: 'MeasurementTools',\n    type: 'ohif.splitButton',\n    props: {\n      groupId: 'MeasurementTools',\n      isRadio: true, // ?\n      // Switch?\n      primary: _createToolButton(\n        'Length',\n        'tool-length',\n        'Length',\n        [\n          ..._createCommands('setToolActive', 'Length', [\n            toolGroupIds.CT,\n            toolGroupIds.PT,\n            toolGroupIds.Fusion,\n            // toolGroupIds.MPR,\n          ]),\n        ],\n        'Length'\n      ),\n      secondary: {\n        icon: 'chevron-down',\n        label: '',\n        isActive: true,\n        tooltip: 'More Measure Tools',\n      },\n      items: [\n        _createToolButton(\n          'Length',\n          'tool-length',\n          'Length',\n          [\n            ..._createCommands('setToolActive', 'Length', [\n              toolGroupIds.CT,\n              toolGroupIds.PT,\n              toolGroupIds.Fusion,\n              // toolGroupIds.MPR,\n            ]),\n          ],\n          'Length Tool'\n        ),\n        _createToolButton(\n          'Bidirectional',\n          'tool-bidirectional',\n          'Bidirectional',\n          [\n            ..._createCommands('setToolActive', 'Bidirectional', [\n              toolGroupIds.CT,\n              toolGroupIds.PT,\n              toolGroupIds.Fusion,\n              // toolGroupIds.MPR,\n            ]),\n          ],\n          'Bidirectional Tool'\n        ),\n        _createToolButton(\n          'ArrowAnnotate',\n          'tool-annotate',\n          'Annotation',\n          [\n            ..._createCommands('setToolActive', 'ArrowAnnotate', [\n              toolGroupIds.CT,\n              toolGroupIds.PT,\n              toolGroupIds.Fusion,\n              // toolGroupIds.MPR,\n            ]),\n          ],\n          'Arrow Annotate'\n        ),\n        _createToolButton(\n          'EllipticalROI',\n          'tool-elipse',\n          'Ellipse',\n          [\n            ..._createCommands('setToolActive', 'EllipticalROI', [\n              toolGroupIds.CT,\n              toolGroupIds.PT,\n              toolGroupIds.Fusion,\n              // toolGroupIds.MPR,\n            ]),\n          ],\n          'Ellipse Tool'\n        ),\n        _createToolButton(\n          'CircleROI',\n          'tool-circle',\n          'Circle',\n          [\n            ..._createCommands('setToolActive', 'CircleROI', [\n              toolGroupIds.CT,\n              toolGroupIds.PT,\n              toolGroupIds.Fusion,\n              // toolGroupIds.MPR,\n            ]),\n          ],\n          'Circle Tool'\n        ),\n      ],\n    },\n  },\n  // Zoom..\n  {\n    id: 'Zoom',\n    type: 'ohif.radioGroup',\n    props: {\n      type: 'tool',\n      icon: 'tool-zoom',\n      label: 'Zoom',\n      commands: [\n        ..._createCommands('setToolActive', 'Zoom', [\n          toolGroupIds.CT,\n          toolGroupIds.PT,\n          toolGroupIds.Fusion,\n          // toolGroupIds.MPR,\n        ]),\n      ],\n    },\n  },\n  {\n    id: 'MPR',\n    type: 'ohif.action',\n    props: {\n      type: 'toggle',\n      icon: 'icon-mpr',\n      label: 'MPR',\n      commands: [\n        {\n          commandName: 'toggleHangingProtocol',\n          commandOptions: {\n            protocolId: 'mpr',\n          },\n          context: 'DEFAULT',\n        },\n      ],\n    },\n  },\n  // Window Level + Presets...\n  {\n    id: 'WindowLevel',\n    type: 'ohif.splitButton',\n    props: {\n      groupId: 'WindowLevel',\n      primary: _createToolButton(\n        'WindowLevel',\n        'tool-window-level',\n        'Window Level',\n        [\n          ..._createCommands('setToolActive', 'WindowLevel', [\n            toolGroupIds.CT,\n            toolGroupIds.PT,\n            toolGroupIds.Fusion,\n            // toolGroupIds.MPR,\n          ]),\n        ],\n        'Window Level'\n      ),\n      secondary: {\n        icon: 'chevron-down',\n        label: 'W/L Manual',\n        isActive: true,\n        tooltip: 'W/L Presets',\n      },\n      isAction: true, // ?\n      renderer: WindowLevelMenuItem,\n      items: [\n        _createWwwcPreset(1, 'Soft tissue', '400 / 40'),\n        _createWwwcPreset(2, 'Lung', '1500 / -600'),\n        _createWwwcPreset(3, 'Liver', '150 / 90'),\n        _createWwwcPreset(4, 'Bone', '2500 / 480'),\n        _createWwwcPreset(5, 'Brain', '80 / 40'),\n      ],\n    },\n  },\n  {\n    id: 'Crosshairs',\n    type: 'ohif.radioGroup',\n    props: {\n      type: 'tool',\n      icon: 'tool-crosshair',\n      label: 'Crosshairs',\n      commands: [\n        ..._createCommands('setToolActive', 'Crosshairs', [\n          toolGroupIds.CT,\n          toolGroupIds.PT,\n          toolGroupIds.Fusion,\n          // toolGroupIds.MPR,\n        ]),\n      ],\n    },\n  },\n  // Pan...\n  {\n    id: 'Pan',\n    type: 'ohif.radioGroup',\n    props: {\n      type: 'tool',\n      icon: 'tool-move',\n      label: 'Pan',\n      commands: [\n        ..._createCommands('setToolActive', 'Pan', [\n          toolGroupIds.CT,\n          toolGroupIds.PT,\n          toolGroupIds.Fusion,\n          // toolGroupIds.MPR,\n        ]),\n      ],\n    },\n  },\n  {\n    id: 'RectangleROIStartEndThreshold',\n    type: 'ohif.radioGroup',\n    props: {\n      type: 'tool',\n      icon: 'tool-create-threshold',\n      label: 'Rectangle ROI Threshold',\n      commands: [\n        ..._createCommands('setToolActive', 'RectangleROIStartEndThreshold', [\n          toolGroupIds.PT,\n        ]),\n        {\n          commandName: 'displayNotification',\n          commandOptions: {\n            title: 'RectangleROI Threshold Tip',\n            text: 'RectangleROI Threshold tool should be used on PT Axial Viewport',\n            type: 'info',\n          },\n        },\n        {\n          commandName: 'setViewportActive',\n          commandOptions: {\n            viewportId: 'ptAXIAL',\n          },\n        },\n      ],\n    },\n  },\n  {\n    id: 'fusionPTColormap',\n    type: 'ohif.splitButton',\n    props: {\n      groupId: 'fusionPTColormap',\n      primary: _createToolButton(\n        'fusionPTColormap',\n        'tool-fusion-color',\n        'Fusion PT Colormap',\n        [],\n        'Fusion PT Colormap'\n      ),\n      secondary: {\n        icon: 'chevron-down',\n        label: 'PT Colormap',\n        isActive: true,\n        tooltip: 'PET Image Colormap',\n      },\n      isAction: true, // ?\n      renderer: WindowLevelMenuItem,\n      items: [\n        _createColormap('HSV', 'hsv'),\n        _createColormap('Hot Iron', 'hot_iron'),\n        _createColormap('S PET', 's_pet'),\n        _createColormap('Red Hot', 'red_hot'),\n        _createColormap('Perfusion', 'perfusion'),\n        _createColormap('Rainbow', 'rainbow_2'),\n        _createColormap('SUV', 'suv'),\n        _createColormap('GE 256', 'ge_256'),\n        _createColormap('GE', 'ge'),\n        _createColormap('Siemens', 'siemens'),\n      ],\n    },\n  },\n];\n\nexport default toolbarButtons;\n","import packageJson from '../package.json';\n\nconst id = packageJson.name;\n\nexport { id };\n","import { hotkeys, classes } from '@ohif/core';\nimport toolbarButtons from './toolbarButtons.js';\nimport { id } from './id.js';\nimport initToolGroups, { toolGroupIds } from './initToolGroups.js';\nimport setCrosshairsConfiguration from './utils/setCrosshairsConfiguration.js';\nimport setFusionActiveVolume from './utils/setFusionActiveVolume.js';\n\nconst { MetadataProvider } = classes;\n\nconst ohif = {\n  layout: '@ohif/extension-default.layoutTemplateModule.viewerLayout',\n  sopClassHandler: '@ohif/extension-default.sopClassHandlerModule.stack',\n  measurements: '@ohif/extension-default.panelModule.measure',\n  thumbnailList: '@ohif/extension-default.panelModule.seriesList',\n};\n\nconst cs3d = {\n  viewport: '@ohif/extension-cornerstone.viewportModule.cornerstone',\n};\n\nconst tmtv = {\n  hangingProtocol: '@ohif/extension-tmtv.hangingProtocolModule.ptCT',\n  petSUV: '@ohif/extension-tmtv.panelModule.petSUV',\n  ROIThresholdPanel: '@ohif/extension-tmtv.panelModule.ROIThresholdSeg',\n};\n\nconst extensionDependencies = {\n  // Can derive the versions at least process.env.from npm_package_version\n  '@ohif/extension-default': '^3.0.0',\n  '@ohif/extension-cornerstone': '^3.0.0',\n  '@ohif/extension-tmtv': '^3.0.0',\n};\n\nlet unsubscriptions = [];\nfunction modeFactory({ modeConfiguration }) {\n  return {\n    // TODO: We're using this as a route segment\n    // We should not be.\n    id,\n    routeName: 'tmtv',\n    displayName: 'Total Metabolic Tumor Volume',\n    /**\n     * Lifecycle hooks\n     */\n    onModeEnter: ({ servicesManager, extensionManager, commandsManager }) => {\n      const {\n        toolbarService,\n        toolGroupService,\n        hangingProtocolService,\n        displaySetService,\n      } = servicesManager.services;\n\n      const utilityModule = extensionManager.getModuleEntry(\n        '@ohif/extension-cornerstone.utilityModule.tools'\n      );\n\n      const { toolNames, Enums } = utilityModule.exports;\n\n      // Init Default and SR ToolGroups\n      initToolGroups(toolNames, Enums, toolGroupService, commandsManager);\n\n      const setWindowLevelActive = () => {\n        toolbarService.recordInteraction({\n          groupId: 'WindowLevel',\n          itemId: 'WindowLevel',\n          interactionType: 'tool',\n          commands: [\n            {\n              commandName: 'setToolActive',\n              commandOptions: {\n                toolName: toolNames.WindowLevel,\n                toolGroupId: toolGroupIds.CT,\n              },\n              context: 'CORNERSTONE',\n            },\n            {\n              commandName: 'setToolActive',\n              commandOptions: {\n                toolName: toolNames.WindowLevel,\n                toolGroupId: toolGroupIds.PT,\n              },\n              context: 'CORNERSTONE',\n            },\n            {\n              commandName: 'setToolActive',\n              commandOptions: {\n                toolName: toolNames.WindowLevel,\n                toolGroupId: toolGroupIds.Fusion,\n              },\n              context: 'CORNERSTONE',\n            },\n          ],\n        });\n      };\n\n      const { unsubscribe } = toolGroupService.subscribe(\n        toolGroupService.EVENTS.VIEWPORT_ADDED,\n        () => {\n          // For fusion toolGroup we need to add the volumeIds for the crosshairs\n          // since in the fusion viewport we don't want both PT and CT to render MIP\n          // when slabThickness is modified\n          const {\n            displaySetMatchDetails,\n          } = hangingProtocolService.getMatchDetails();\n\n          setCrosshairsConfiguration(\n            displaySetMatchDetails,\n            toolNames,\n            toolGroupService,\n            displaySetService\n          );\n\n          setFusionActiveVolume(\n            displaySetMatchDetails,\n            toolNames,\n            toolGroupService,\n            displaySetService\n          );\n\n          setWindowLevelActive();\n        }\n      );\n\n      unsubscriptions.push(unsubscribe);\n      toolbarService.init(extensionManager);\n      toolbarService.addButtons(toolbarButtons);\n      toolbarService.createButtonSection('primary', [\n        'MeasurementTools',\n        'Zoom',\n        'WindowLevel',\n        'Crosshairs',\n        'Pan',\n        'RectangleROIStartEndThreshold',\n        'fusionPTColormap',\n      ]);\n\n      // For the hanging protocol we need to decide on the window level\n      // based on whether the SUV is corrected or not, hence we can't hard\n      // code the window level in the hanging protocol but we add a custom\n      // attribute to the hanging protocol that will be used to get the\n      // window level based on the metadata\n      hangingProtocolService.addCustomAttribute(\n        'getPTVOIRange',\n        'get PT VOI based on corrected or not',\n        props => {\n          const ptDisplaySet = props.find(\n            imageSet => imageSet.Modality === 'PT'\n          );\n\n          if (!ptDisplaySet) {\n            return;\n          }\n\n          const { imageId } = ptDisplaySet.images[0];\n          const imageIdScalingFactor = MetadataProvider.get(\n            'scalingModule',\n            imageId\n          );\n\n          const isSUVAvailable =\n            imageIdScalingFactor && imageIdScalingFactor.suvbw;\n\n          if (isSUVAvailable) {\n            return {\n              windowWidth: 5,\n              windowCenter: 2.5,\n            };\n          }\n\n          return;\n        }\n      );\n    },\n    onModeExit: ({ servicesManager }) => {\n      const {\n        toolGroupService,\n        syncGroupService,\n        segmentationService,\n        cornerstoneViewportService,\n      } = servicesManager.services;\n\n      unsubscriptions.forEach(unsubscribe => unsubscribe());\n      toolGroupService.destroy();\n      syncGroupService.destroy();\n      segmentationService.destroy();\n      cornerstoneViewportService.destroy();\n    },\n    validationTags: {\n      study: [],\n      series: [],\n    },\n    isValidMode: ({ modalities, study }) => {\n      const modalities_list = modalities.split('\\\\');\n      const invalidModalities = ['SM'];\n\n      const isValid =\n        modalities_list.includes('CT') &&\n        modalities_list.includes('PT') &&\n        !invalidModalities.some(modality =>\n          modalities_list.includes(modality)\n        ) &&\n        // This is study is a 4D study with PT and CT and not a 3D study for the tmtv\n        // mode, until we have a better way to identify 4D studies we will use the\n        // StudyInstanceUID to identify the study\n        // Todo: when we add the 4D mode which comes with a mechanism to identify\n        // 4D studies we can use that\n        study.studyInstanceUid !==\n          '1.3.6.1.4.1.12842.1.1.14.3.20220915.105557.468.2963630849';\n\n      // there should be both CT and PT modalities and the modality should not be SM\n      return isValid;\n    },\n    routes: [\n      {\n        path: 'tmtv',\n        /*init: ({ servicesManager, extensionManager }) => {\n          //defaultViewerRouteInit\n        },*/\n        layoutTemplate: ({ location, servicesManager }) => {\n          return {\n            id: ohif.layout,\n            props: {\n              // leftPanels: [ohif.thumbnailList],\n              rightPanels: [tmtv.ROIThresholdPanel, tmtv.petSUV],\n              viewports: [\n                {\n                  namespace: cs3d.viewport,\n                  displaySetsToDisplay: [ohif.sopClassHandler],\n                },\n              ],\n            },\n          };\n        },\n      },\n    ],\n    extensions: extensionDependencies,\n    hangingProtocol: tmtv.hangingProtocol,\n    sopClassHandlers: [ohif.sopClassHandler],\n    hotkeys: [...hotkeys.defaults.hotkeyBindings],\n  };\n}\n\nconst mode = {\n  id,\n  modeFactory,\n  extensionDependencies,\n};\n\nexport default mode;\n","import { toolGroupIds } from '../initToolGroups';\n\nexport default function setCrosshairsConfiguration(\n  matches,\n  toolNames,\n  toolGroupService,\n  displaySetService\n) {\n  const matchDetails = matches.get('ctDisplaySet');\n\n  if (!matchDetails) {\n    return;\n  }\n\n  const { SeriesInstanceUID } = matchDetails;\n  const displaySets = displaySetService.getDisplaySetsForSeries(\n    SeriesInstanceUID\n  );\n\n  const toolConfig = toolGroupService.getToolConfiguration(\n    toolGroupIds.Fusion,\n    toolNames.Crosshairs\n  );\n\n  const crosshairsConfig = {\n    ...toolConfig,\n    filterActorUIDsToSetSlabThickness: [displaySets[0].displaySetInstanceUID],\n  };\n\n  toolGroupService.setToolConfiguration(\n    toolGroupIds.Fusion,\n    toolNames.Crosshairs,\n    crosshairsConfig\n  );\n}\n","import { toolGroupIds } from '../initToolGroups';\n\nexport default function setFusionActiveVolume(\n  matches,\n  toolNames,\n  toolGroupService,\n  displaySetService\n) {\n  const matchDetails = matches.get('ptDisplaySet');\n\n  if (!matchDetails) {\n    return;\n  }\n\n  const { SeriesInstanceUID } = matchDetails;\n\n  const displaySets = displaySetService.getDisplaySetsForSeries(\n    SeriesInstanceUID\n  );\n\n  if (!displaySets || displaySets.length === 0) {\n    return;\n  }\n\n  const wlToolConfig = toolGroupService.getToolConfiguration(\n    toolGroupIds.Fusion,\n    toolNames.WindowLevel\n  );\n\n  const ellipticalToolConfig = toolGroupService.getToolConfiguration(\n    toolGroupIds.Fusion,\n    toolNames.EllipticalROI\n  );\n\n  // Todo: this should not take into account the loader id\n  const volumeId = `cornerstoneStreamingImageVolume:${displaySets[0].displaySetInstanceUID}`;\n\n  const windowLevelConfig = {\n    ...wlToolConfig,\n    volumeId,\n  };\n\n  const ellipticalROIConfig = {\n    ...ellipticalToolConfig,\n    volumeId,\n  };\n\n  toolGroupService.setToolConfiguration(\n    toolGroupIds.Fusion,\n    toolNames.WindowLevel,\n    windowLevelConfig\n  );\n\n  toolGroupService.setToolConfiguration(\n    toolGroupIds.Fusion,\n    toolNames.EllipticalROI,\n    ellipticalROIConfig\n  );\n}\n"],"names":["root","factory","exports","module","require","define","amd","globalThis","__WEBPACK_EXTERNAL_MODULE__762__","__WEBPACK_EXTERNAL_MODULE__369__","__webpack_module_cache__","__webpack_require__","moduleId","cachedModule","undefined","__webpack_modules__","d","definition","key","o","Object","defineProperty","enumerable","get","obj","prop","prototype","hasOwnProperty","call","toolGroupIds","CT","PT","Fusion","MIP","default","toolNames","Enums","toolGroupService","commandsManager","tools","active","toolName","WindowLevel","bindings","mouseButton","MouseBindings","Primary","Pan","Auxiliary","Zoom","Secondary","StackScrollMouseWheel","passive","Length","ArrowAnnotate","Bidirectional","DragProbe","Probe","EllipticalROI","RectangleROI","StackScroll","Angle","CobbAngle","Magnify","enabled","SegmentationDisplay","disabled","Crosshairs","toolsConfig","viewportIndicators","autoPan","panSize","getTextCallback","callback","eventDetails","runCommand","changeTextCallback","data","createToolGroupAndAddTools","mipTools","VolumeRotateMouseWheel","MipJumpToClick","mipToolsConfig","rotateIncrementDegrees","targetViewportIds","_initToolGroups","windowLevelPresets","defaults","_createButton","type","id","icon","label","commands","tooltip","_createColormap","colormap","toString","title","subtitle","commandName","commandOptions","toolGroupId","bind","_createToolButton","_createWwwcPreset","preset","context","_createCommands","map","props","groupId","isRadio","primary","secondary","isActive","items","protocolId","isAction","renderer","WindowLevelMenuItem","text","viewportId","packageJson","MetadataProvider","classes","ohif","cs3d","tmtv","extensionDependencies","unsubscriptions","modeFactory","_ref","modeConfiguration","routeName","displayName","onModeEnter","_ref2","servicesManager","extensionManager","toolbarService","hangingProtocolService","displaySetService","services","utilityModule","getModuleEntry","initToolGroups","unsubscribe","subscribe","EVENTS","VIEWPORT_ADDED","displaySetMatchDetails","getMatchDetails","matches","matchDetails","SeriesInstanceUID","displaySets","getDisplaySetsForSeries","crosshairsConfig","getToolConfiguration","filterActorUIDsToSetSlabThickness","displaySetInstanceUID","setToolConfiguration","setCrosshairsConfiguration","length","wlToolConfig","ellipticalToolConfig","volumeId","windowLevelConfig","ellipticalROIConfig","setFusionActiveVolume","recordInteraction","itemId","interactionType","push","init","addButtons","toolbarButtons","createButtonSection","addCustomAttribute","ptDisplaySet","find","imageSet","Modality","imageId","images","imageIdScalingFactor","suvbw","windowWidth","windowCenter","onModeExit","_ref3","syncGroupService","segmentationService","cornerstoneViewportService","forEach","destroy","validationTags","study","series","isValidMode","_ref4","modalities","modalities_list","split","includes","some","modality","studyInstanceUid","routes","path","layoutTemplate","_ref5","location","rightPanels","viewports","namespace","displaySetsToDisplay","extensions","hangingProtocol","sopClassHandlers","hotkeys"],"sourceRoot":""}

package/package.json

@@ -0,0 +1,50 @@
+{
+  "name": "@ohif/mode-tmtv",
+  "version": "3.0.0",
+  "description": "Total Metabolic Tumor Volume Workflow",
+  "author": "OHIF",
+  "license": "MIT",
+  "repository": "OHIF/Viewers",
+  "main": "dist/ohif-mode-tmtv.umd.js",
+  "module": "src/index.js",
+  "engines": {
+    "node": ">=14",
+    "npm": ">=6",
+    "yarn": ">=1.16.0"
+  },
+  "files": [
+    "dist",
+    "README.md"
+  ],
+  "publishConfig": {
+    "access": "public"
+  },
+  "keywords": [
+    "ohif-mode"
+  ],
+  "scripts": {
+    "dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
+    "dev:cornerstone": "yarn run dev",
+    "build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
+    "build:package": "yarn run build",
+    "start": "yarn run dev",
+    "test:unit": "jest --watchAll",
+    "test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
+  },
+  "peerDependencies": {
+    "@ohif/core": "^3.0.0",
+    "@ohif/extension-default": "^3.0.0",
+    "@ohif/extension-cornerstone": "^3.0.0",
+    "@ohif/extension-cornerstone-dicom-sr": "^3.0.0",
+    "@ohif/extension-dicom-pdf": "^3.0.1",
+    "@ohif/extension-dicom-video": "^3.0.1",
+    "@ohif/extension-measurement-tracking": "^3.0.0"
+  },
+  "dependencies": {
+    "@babel/runtime": "^7.20.13"
+  },
+  "devDependencies": {
+    "webpack": "^5.50.0",
+    "webpack-merge": "^5.7.3"
+  }
+}