@ohif/extension-tmtv 3.9.2 → 3.9.3

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Files changed (2) hide show
  1. package/dist/ohif-extension-tmtv.umd.js +1 -1
  2. package/package.json +3 -3
package/dist/ohif-extension-tmtv.umd.js CHANGED
@@ -1,2 +1,2 @@
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  /*! For license information please see ohif-extension-tmtv.umd.js.LICENSE.txt */
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t},exportRTReportForAnnotations:({annotations:e})=>{he(e)},setFusionPTColormap:({toolGroupId:e,colormap:n})=>{const a=s.getToolGroup(e);if(!a)return;const{viewportMatchDetails:o}=i.getMatchDetails(),r=g.getMatchingPTDisplaySet({viewportMatchDetails:o});if(!r)return;const 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c=d(Ie).map((e=>ae.annotation.state.getAnnotation(e))),u={dimensions:i.dimensions,origin:i.origin,direction:i.direction,spacing:i.spacing,metadata:i.metadata,scalarData:i.voxelManager.getCompleteScalarDataArray()},p={dimensions:s.dimensions,origin:s.origin,direction:s.direction,spacing:s.spacing,metadata:s.metadata,scalarData:s.voxelManager.getCompleteScalarDataArray()},m=c.map((e=>({...e,metadata:{...e.metadata,enabledElement:{...e.metadata.enabledElement,viewport:null,renderingEngine:null,element:null}}}))),g=await xe.executeTask("suv-peak-worker","calculateSuvPeak",{labelmapProps:u,referenceVolumeProps:p,annotations:m,segmentIndex:t})||{};return{suvPeak:g.mean,suvMax:g.max,suvMaxIJK:g.maxIJK,suvMaxLPS:g.maxLPS}},getLesionStats:({segmentationId:e,segmentIndex:t=1})=>{const{labelmapVolume:n,referencedVolume:a}=Ee(e),{voxelManager:o,imageData:r,spacing:i}=n,{voxelManager:s}=a;let c=-1/0,l=1/0;const u=[];let p=0;o.forEach((({value:e,index:n})=>{if(e===t){const 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t=Re(e);return{dimensions:t.dimensions,spacing:t.spacing,scalarData:t.voxelManager.getCompleteScalarDataArray(),origin:t.origin,direction:t.direction}})),{referencedVolume:n}=Ee(e[0].segmentationId),a={dimensions:n.dimensions,spacing:n.spacing,scalarData:n.voxelManager.getCompleteScalarDataArray(),origin:n.origin,direction:n.direction};return await xe.executeTask("suv-peak-worker","getTotalLesionGlycolysis",{labelmapProps:t,referenceVolumeProps:a})},setStartSliceForROIThresholdTool:()=>{const{viewport:e}=m(),{focalPoint:t}=e.getCamera(),n=d(Ie)[0],a=ae.annotation.state.getAnnotation(n);a.data.startCoordinate=t,a.invalidated=!0,e.render()},setEndSliceForROIThresholdTool:()=>{const{viewport:e}=m(),t=d(Ie)[0],n=ae.annotation.state.getAnnotation(t),a=e.getCamera().focalPoint;n.data.endCoordinate=a,n.invalidated=!0,e.render()},createTMTVRTReport:()=>{const e=ae.annotation.state.getAnnotationManager(),n=[];Object.keys(e.annotations).forEach((t=>{const a=e.annotations[t],o=Ie.reduce(((e,t)=>[...e,...a[t]??[]]),[]);n.push(...o)})),t.runCommand("exportRTReportForAnnotations",{annotations:n})},getSegmentationCSVReport:({segmentations:e})=>{e&&e.length||(e=l.getSegmentations());const t={};for(const n of e){const{label:e,segmentationId:a,representationData:o}=n,r=a,i={id:r,label:e};if(!o){t[r]=i;continue}const{cachedStats:s}=n.segments[1]||{};s&&Object.entries(s).forEach((([e,t])=>{"object"!=typeof t?i[e]=t:Object.entries(t).forEach((([t,n])=>{i[`${e}_${t}`]=n}))}));const c=n.representationData[ve.Labelmap];if(!c){t[r]=i;continue}const l=c.referencedVolumeId,u=Y.cache.getVolume(l);if(!u){t[r]=i;continue}if(!u.imageIds||!u.imageIds.length){t[r]=i;continue}const p=u.imageIds[0],m=x().classes.MetadataProvider.get("instance",p);m?t[r]={...i,PatientID:m.PatientID??"000000",PatientName:Se(m.PatientName),StudyInstanceUID:m.StudyInstanceUID,SeriesInstanceUID:m.SeriesInstanceUID,StudyDate:m.StudyDate}:t[r]=i}return t},exportRTReportForAnnotations:({annotations:e})=>{he(e)},setFusionPTColormap:({toolGroupId:e,colormap:n})=>{const a=s.getToolGroup(e);if(!a)return;const{viewportMatchDetails:o}=i.getMatchDetails(),r=g.getMatchingPTDisplaySet({viewportMatchDetails:o});if(!r)return;const l=a.getViewportIds(),u=[];l.forEach((e=>{t.runCommand("setViewportColormap",{viewportId:e,displaySetInstanceUID:r.displaySetInstanceUID,colormap:{name:n}}),u.push(c.getCornerstoneViewport(e))})),u.forEach((e=>{e.render()}))}},f={setEndSliceForROIThresholdTool:{commandFn:g.setEndSliceForROIThresholdTool},setStartSliceForROIThresholdTool:{commandFn:g.setStartSliceForROIThresholdTool},getMatchingPTDisplaySet:{commandFn:g.getMatchingPTDisplaySet},getPTMetadata:{commandFn:g.getPTMetadata},createNewLabelmapFromPT:{commandFn:g.createNewLabelmapFromPT},thresholdSegmentationByRectangleROITool:{commandFn:g.thresholdSegmentationByRectangleROITool},getTotalLesionGlycolysis:{commandFn:g.getTotalLesionGlycolysis},calculateSuvPeak:{commandFn:g.calculateSuvPeak},getLesionStats:{commandFn:g.getLesionStats},calculateTMTV:{commandFn:g.calculateTMTV},exportTMTVReportCSV:{commandFn:g.exportTMTVReportCSV},createTMTVRTReport:{commandFn:g.createTMTVRTReport},getSegmentationCSVReport:{commandFn:g.getSegmentationCSVReport},exportRTReportForAnnotations:{commandFn:g.exportRTReportForAnnotations},setFusionPTColormap:{commandFn:g.setFusionPTColormap}};return{actions:g,definitions:f,defaultContext:"TMTV:CORNERSTONE"}},Ce="roi_stat",Me=[{value:Ce,label:"Max",placeHolder:"Max"},{value:"range",label:"Range",placeHolder:"Range"}];const De=function({config:e,dispatch:t,runCommand:n}){const{t:a}=B("ROIThresholdConfiguration");return h.createElement("div",{className:"bg-primary-dark flex flex-col space-y-4"},h.createElement("div",{className:"flex items-end space-x-2"},h.createElement("div",{className:"flex w-1/2 flex-col"},h.createElement(b.Select,{label:a("Strategy"),closeMenuOnSelect:!0,className:"border-primary-main mr-2 bg-black text-white ",options:Me,placeholder:Me.find((t=>t.value===e.strategy)).placeHolder,value:e.strategy,onChange:({value:e})=>{t({type:"setStrategy",payload:{strategy:e}})}})),h.createElement("div",{className:"w-1/2"},h.createElement(b.LegacyButtonGroup,null,h.createElement(b.LegacyButton,{size:"initial",className:"px-2 py-2 text-base text-white",color:"primaryLight",variant:"outlined",onClick:()=>n("setStartSliceForROIThresholdTool")},a("Start")),h.createElement(b.LegacyButton,{size:"initial",color:"primaryLight",variant:"outlined",className:"px-2 py-2 text-base text-white",onClick:()=>n("setEndSliceForROIThresholdTool")},a("End"))))),e.strategy===Ce&&h.createElement(b.Input,{label:a("Percentage of Max SUV"),labelClassName:"text-[13px] font-inter text-white",className:"border-primary-main bg-black",type:"text",containerClassName:"mr-2",value:e.weight,onChange:e=>{t({type:"setWeight",payload:{weight:e.target.value}})}}),e.strategy!==Ce&&h.createElement("div",{className:"mr-2 text-sm"},h.createElement("table",null,h.createElement("tbody",null,h.createElement("tr",{className:"mt-2"},h.createElement("td",{className:"pr-4",colSpan:"3"},h.createElement(b.Label,{className:"font-inter text-[13px] text-white",text:"Lower & Upper Ranges"}))),h.createElement("tr",{className:"mt-2"},h.createElement("td",{className:"pr-4 pt-2 text-center"},h.createElement(b.Label,{className:"text-white",text:"CT"})),h.createElement("td",null,h.createElement("div",{className:"flex justify-between"},h.createElement(b.Input,{label:a(""),labelClassName:"text-white",className:"border-primary-main mt-2 bg-black",type:"text",containerClassName:"mr-2",value:e.ctLower,onChange:e=>{t({type:"setThreshold",payload:{ctLower:e.target.value}})}}),h.createElement(b.Input,{label:a(""),labelClassName:"text-white",className:"border-primary-main mt-2 bg-black",type:"text",containerClassName:"mr-2",value:e.ctUpper,onChange:e=>{t({type:"setThreshold",payload:{ctUpper:e.target.value}})}})))),h.createElement("tr",null,h.createElement("td",{className:"pr-4 pt-2 text-center"},h.createElement(b.Label,{className:"text-white",text:"PT"})),h.createElement("td",null,h.createElement("div",{className:"flex justify-between"},h.createElement(b.Input,{label:a(""),labelClassName:"text-white",className:"border-primary-main mt-2 bg-black",type:"text",containerClassName:"mr-2",value:e.ptLower,onChange:e=>{t({type:"setThreshold",payload:{ptLower:e.target.value}})}}),h.createElement(b.Input,{label:a(""),labelClassName:"text-white",className:"border-primary-main mt-2 bg-black",type:"text",containerClassName:"mr-2",value:e.ptUpper,onChange:e=>{t({type:"setThreshold",payload:{ptUpper:e.target.value}})}}))))))))},Ne=Ce;function Pe(e,t){const{payload:n}=t,{strategy:a,ctLower:o,ctUpper:r,ptLower:i,ptUpper:s,weight:c}=n;switch(t.type){case"setStrategy":return{...e,strategy:a};case"setThreshold":return{...e,ctLower:o||e.ctLower,ctUpper:r||e.ctUpper,ptLower:i||e.ptLower,ptUpper:s||e.ptUpper};case"setWeight":return{...e,weight:c};default:return e}}const Le=function({servicesManager:e,commandsManager:t}){const{segmentationService:n}=e.services,[a,o]=(0,h.useState)(null),r=(0,h.useCallback)(((e,n={})=>t.runCommand(e,n)),[t]),[i,s]=(0,h.useReducer)(Pe,{strategy:Ne,ctLower:-1024,ctUpper:1024,ptLower:2.5,ptUpper:100,weight:.41}),c=(0,h.useCallback)((()=>{const e=a,t=ae.segmentation.segmentIndex.getActiveSegmentIndex(e);r("thresholdSegmentationByRectangleROITool",{segmentationId:e,config:i,segmentIndex:t})}),[a,i]);return(0,h.useEffect)((()=>{const e=n.getSegmentationRepresentations();if(!e.length)return;const t=e.find((e=>e.isActive));o(t.id)}),[]),(0,h.useEffect)((()=>{const e=n.EVENTS.SEGMENTATION_MODIFIED,t=[];return[e].forEach((e=>{const{unsubscribe:a}=n.subscribe(e,(()=>{const e=n.getSegmentationRepresentations();if(!e.length)return;const t=e.find((e=>e.isActive));o(t.id)}));t.push(a)})),()=>{t.forEach((e=>{e()}))}}),[]),h.createElement("div",{className:"invisible-scrollbar mb-2 flex flex-col overflow-y-auto overflow-x-hidden"},h.createElement(De,{config:i,dispatch:s,runCommand:r}),null!==a&&h.createElement(b.Button,{className:"mt-2 !h-[26px] !w-[75px]",onClick:c},"Run"))};const ke={id:e,preRegistration({servicesManager:e,commandsManager:t,extensionManager:n,configuration:a={}}){!function({servicesManager:e}){const{measurementService:t,displaySetService:n,cornerstoneViewportService:a}=e.services;(0,ae.addTool)(ae.RectangleROIStartEndThresholdTool),(0,ae.addTool)(ae.CircleROIStartEndThresholdTool);const{RectangleROIStartEndThreshold:o,CircleROIStartEndThreshold:r}=se(t,n,a),i=t.getSource(ce,le);t.addMapping(i,"RectangleROIStartEndThreshold",o.matchingCriteria,o.toAnnotation,o.toMeasurement),t.addMapping(i,"CircleROIStartEndThreshold",r.matchingCriteria,r.toAnnotation,r.toMeasurement)}({servicesManager:e,commandsManager:t,extensionManager:n,configuration:a})},getToolbarModule:function({commandsManager:e,servicesManager:t}){return[{name:"tmtv.RectangleROIThresholdOptions",defaultComponent:()=>Le({commandsManager:e,servicesManager:t})}]},getPanelModule:ne,getHangingProtocolModule:y,getCommandsModule:({servicesManager:e,commandsManager:t,extensionManager:n})=>Oe({servicesManager:e,commandsManager:t,extensionManager:n})},je=ke})(),m})()));
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@ohif/extension-tmtv",
3
- "version": "3.9.2",
3
+ "version": "3.9.3",
4
4
  "description": "OHIF extension for Total Metabolic Tumor Volume",
5
5
  "author": "OHIF",
6
6
  "license": "MIT",
@@ -30,8 +30,8 @@
30
30
  "test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
31
31
  },
32
32
  "peerDependencies": {
33
- "@ohif/core": "3.9.2",
34
- "@ohif/ui": "3.9.2",
33
+ "@ohif/core": "3.9.3",
34
+ "@ohif/ui": "3.9.3",
35
35
  "dcmjs": "*",
36
36
  "dicom-parser": "^1.8.9",
37
37
  "hammerjs": "^2.0.8",