@ohif/extension-tmtv 3.9.0-beta.82 → 3.9.0-beta.83

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Files changed (2) hide show
  1. package/dist/ohif-extension-tmtv.umd.js +1 -1
  2. package/package.json +3 -3
package/dist/ohif-extension-tmtv.umd.js CHANGED
@@ -1,2 +1,2 @@
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  /*! For license information please see ohif-extension-tmtv.umd.js.LICENSE.txt */
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we=function({servicesManager:e,commandsManager:t}){const{segmentationService:n}=e.services,[a,o]=(0,g.useState)(null),r=(0,g.useCallback)(((e,n={})=>t.runCommand(e,n)),[t]),[i,s]=(0,g.useReducer)(Ie,{strategy:Te,ctLower:-1024,ctUpper:1024,ptLower:2.5,ptUpper:100,weight:.41}),c=(0,g.useCallback)((()=>{const e=a,t=z.segmentation.segmentIndex.getActiveSegmentIndex(e);r("thresholdSegmentationByRectangleROITool",{segmentationId:e,config:i,segmentIndex:t})}),[a,i]);return(0,g.useEffect)((()=>{const e=n.getSegmentations();if(!e.length)return;const t=e.find((e=>e.isActive));o(t.id)}),[]),(0,g.useEffect)((()=>{const e=n.EVENTS.SEGMENTATION_ADDED,t=n.EVENTS.SEGMENTATION_UPDATED,a=[];return[e,t].forEach((e=>{const{unsubscribe:t}=n.subscribe(e,(()=>{const e=n.getSegmentations();if(!e.length)return;const t=e.find((e=>e.isActive));o(t.id)}));a.push(t)})),()=>{a.forEach((e=>{e()}))}}),[]),g.createElement("div",{className:"invisible-scrollbar mb-2 flex flex-col overflow-y-auto 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r=t.runCommand("getSegmentationCSVReport",{segmentations:e}),i=[{key:"Total Lesion Glycolysis",value:{tlg:g.getTotalLesionGlycolysis({segmentations:e}).toFixed(4)}},{key:"Threshold Configuration",value:{...a}}];void 0!==n&&i.unshift({key:"Total Metabolic Tumor Volume",value:{tmtv:n}}),function(e,t,n={}){const a=e[Object.keys(e)[0]],o=Object.keys(a),r=[o.join(",")];Object.values(e).forEach((e=>{const t=[];o.forEach((n=>{t.push(Array.isArray(e[n])?e[n].join(" "):e[n])})),r.push(t.join(","))})),r.push(""),r.push(""),r.push(""),r.push(`Patient ID,${a.PatientID}`),r.push(`Study Date,${a.StudyDate}`),r.push(""),t.forEach((({key:e,value:t})=>{const n=[];n.push(`${e}`),Object.keys(t).forEach((e=>{n.push(`${e}`),n.push(`${t[e]}`)})),r.push(n.join(","))}));const i=new Blob([r.join("\n")],{type:"text/csv;charset=utf-8"}),s=URL.createObjectURL(i),c=document.createElement("a");c.href=s,c.download=n.filename??`${a.PatientID}_tmtv.csv`,c.click()}(r,i,o)},getTotalLesionGlycolysis:({segmentations:e})=>{const t=e.map((e=>l.getLabelmapVolume(e.id)));let n;try{n=Y.utilities.segmentation.createMergedLabelmapForIndex(t)}catch(e){return void console.error("commandsModule::getTotalLesionGlycolysis",e)}const{referencedVolumeId:a,spacing:o}=t[0];a||console.error("commandsModule::getTotalLesionGlycolysis:No referencedVolumeId found");const r=z.cache.getVolume(a),i=n.getScalarData();i.length!==r.getScalarData().length&&console.error("commandsModule::getTotalLesionGlycolysis:Labelmap and ptVolume are not the same size");let s=0,c=0;for(let e=0;e<i.length;e++)0!==i[e]&&(s+=r.getScalarData()[e],c+=1);return s/c*c*o[0]*o[1]*o[2]*.001},setStartSliceForROIThresholdTool:()=>{const{viewport:e}=m(),{focalPoint:t}=e.getCamera(),n=f(ye)[0],a=Y.annotation.state.getAnnotation(n);a.data.startCoordinate=t,a.invalidated=!0,e.render()},setEndSliceForROIThresholdTool:()=>{const{viewport:e}=m(),t=f(ye)[0],n=Y.annotation.state.getAnnotation(t),a=e.getCamera().focalPoint;n.data.endCoordinate=a,n.invalidated=!0,e.render()},createTMTVRTReport:()=>{const e=Y.annotation.state.getAnnotationManager(),n=[];Object.keys(e.annotations).forEach((t=>{const a=e.annotations[t],o=ye.reduce(((e,t)=>[...e,...a[t]??[]]),[]);n.push(...o)})),t.runCommand("exportRTReportForAnnotations",{annotations:n})},getSegmentationCSVReport:({segmentations:e})=>{e&&e.length||(e=l.getSegmentations());const t={};for(const n of e){const{id:e,label:a,cachedStats:o}=n,r={id:e,label:a};if(!o){t[e]=r;continue}Object.keys(o).forEach((e=>{"object"!=typeof o[e]?r[e]=o[e]:Object.keys(o[e]).forEach((t=>{r[`${e}_${t}`]=o[e][t]}))}));const i=l.getLabelmapVolume(e);if(!i){t[e]=r;continue}const s=i.referencedVolumeId;r.referencedVolumeId=s;const c=l.getLabelmapVolume(s);if(!c){t[e]=r;continue}if(!c.imageIds||!c.imageIds.length){t[e]=r;continue}const u=c.imageIds[0],p=b().classes.MetadataProvider.get("instance",u);p?t[e]={...r,PatientID:p.PatientID??"000000",PatientName:p.PatientName.Alphabetic,StudyInstanceUID:p.StudyInstanceUID,SeriesInstanceUID:p.SeriesInstanceUID,StudyDate:p.StudyDate}:t[e]=r}return t},exportRTReportForAnnotations:({annotations:e})=>{fe(e)},setFusionPTColormap:({toolGroupId:e,colormap:n})=>{const a=s.getToolGroup(e),{viewportMatchDetails:o}=i.getMatchDetails(),r=g.getMatchingPTDisplaySet({viewportMatchDetails:o});if(!r)return;const l=a.getViewportIds(),u=[];l.forEach((e=>{t.runCommand("setViewportColormap",{viewportId:e,displaySetInstanceUID:r.displaySetInstanceUID,colormap:{name:n}}),u.push(c.getCornerstoneViewport(e))})),u.forEach((e=>{e.render()}))}},y={setEndSliceForROIThresholdTool:{commandFn:g.setEndSliceForROIThresholdTool},setStartSliceForROIThresholdTool:{commandFn:g.setStartSliceForROIThresholdTool},getMatchingPTDisplaySet:{commandFn:g.getMatchingPTDisplaySet},getPTMetadata:{commandFn:g.getPTMetadata},createNewLabelmapFromPT:{commandFn:g.createNewLabelmapFromPT},setSegmentationActiveForToolGroups:{commandFn:g.setSegmentationActiveForToolGroups},thresholdSegmentationByRectangleROITool:{commandFn:g.thresholdSegmentationByRectangleROITool},getTotalLesionGlycolysis:{commandFn:g.getTotalLesionGlycolysis},calculateSuvPeak:{commandFn:g.calculateSuvPeak},getLesionStats:{commandFn:g.getLesionStats},calculateTMTV:{commandFn:g.calculateTMTV},exportTMTVReportCSV:{commandFn:g.exportTMTVReportCSV},createTMTVRTReport:{commandFn:g.createTMTVRTReport},getSegmentationCSVReport:{commandFn:g.getSegmentationCSVReport},exportRTReportForAnnotations:{commandFn:g.exportRTReportForAnnotations},setFusionPTColormap:{commandFn:g.setFusionPTColormap}};return{actions:g,definitions:y,defaultContext:"TMTV:CORNERSTONE"}},Ie="roi_stat",xe=[{value:Ie,label:"Max",placeHolder:"Max"},{value:"range",label:"Range",placeHolder:"Range"}];const we=function({config:e,dispatch:t,runCommand:n}){const{t:a}=W("ROIThresholdConfiguration");return g.createElement("div",{className:"bg-primary-dark flex flex-col space-y-4"},g.createElement("div",{className:"flex items-end space-x-2"},g.createElement("div",{className:"flex w-1/2 flex-col"},g.createElement(v.Select,{label:a("Strategy"),closeMenuOnSelect:!0,className:"border-primary-main mr-2 bg-black text-white ",options:xe,placeholder:xe.find((t=>t.value===e.strategy)).placeHolder,value:e.strategy,onChange:({value:e})=>{t({type:"setStrategy",payload:{strategy:e}})}})),g.createElement("div",{className:"w-1/2"},g.createElement(v.LegacyButtonGroup,null,g.createElement(v.LegacyButton,{size:"initial",className:"px-2 py-2 text-base text-white",color:"primaryLight",variant:"outlined",onClick:()=>n("setStartSliceForROIThresholdTool")},a("Start")),g.createElement(v.LegacyButton,{size:"initial",color:"primaryLight",variant:"outlined",className:"px-2 py-2 text-base text-white",onClick:()=>n("setEndSliceForROIThresholdTool")},a("End"))))),e.strategy===Ie&&g.createElement(v.Input,{label:a("Percentage of Max SUV"),labelClassName:"text-[13px] font-inter text-white",className:"border-primary-main bg-black",type:"text",containerClassName:"mr-2",value:e.weight,onChange:e=>{t({type:"setWeight",payload:{weight:e.target.value}})}}),e.strategy!==Ie&&g.createElement("div",{className:"mr-2 text-sm"},g.createElement("table",null,g.createElement("tbody",null,g.createElement("tr",{className:"mt-2"},g.createElement("td",{className:"pr-4",colSpan:"3"},g.createElement(v.Label,{className:"font-inter text-[13px] text-white",text:"Lower & Upper Ranges"}))),g.createElement("tr",{className:"mt-2"},g.createElement("td",{className:"pr-4 pt-2 text-center"},g.createElement(v.Label,{className:"text-white",text:"CT"})),g.createElement("td",null,g.createElement("div",{className:"flex justify-between"},g.createElement(v.Input,{label:a(""),labelClassName:"text-white",className:"border-primary-main mt-2 bg-black",type:"text",containerClassName:"mr-2",value:e.ctLower,onChange:e=>{t({type:"setThreshold",payload:{ctLower:e.target.value}})}}),g.createElement(v.Input,{label:a(""),labelClassName:"text-white",className:"border-primary-main mt-2 bg-black",type:"text",containerClassName:"mr-2",value:e.ctUpper,onChange:e=>{t({type:"setThreshold",payload:{ctUpper:e.target.value}})}})))),g.createElement("tr",null,g.createElement("td",{className:"pr-4 pt-2 text-center"},g.createElement(v.Label,{className:"text-white",text:"PT"})),g.createElement("td",null,g.createElement("div",{className:"flex justify-between"},g.createElement(v.Input,{label:a(""),labelClassName:"text-white",className:"border-primary-main mt-2 bg-black",type:"text",containerClassName:"mr-2",value:e.ptLower,onChange:e=>{t({type:"setThreshold",payload:{ptLower:e.target.value}})}}),g.createElement(v.Input,{label:a(""),labelClassName:"text-white",className:"border-primary-main mt-2 bg-black",type:"text",containerClassName:"mr-2",value:e.ptUpper,onChange:e=>{t({type:"setThreshold",payload:{ptUpper:e.target.value}})}}))))))))},Ee=Ie;function Re(e,t){const{payload:n}=t,{strategy:a,ctLower:o,ctUpper:r,ptLower:i,ptUpper:s,weight:c}=n;switch(t.type){case"setStrategy":return{...e,strategy:a};case"setThreshold":return{...e,ctLower:o||e.ctLower,ctUpper:r||e.ctUpper,ptLower:i||e.ptLower,ptUpper:s||e.ptUpper};case"setWeight":return{...e,weight:c};default:return e}}const De=function({servicesManager:e,commandsManager:t}){const{segmentationService:n}=e.services,[a,o]=(0,g.useState)(null),r=(0,g.useCallback)(((e,n={})=>t.runCommand(e,n)),[t]),[i,s]=(0,g.useReducer)(Re,{strategy:Ee,ctLower:-1024,ctUpper:1024,ptLower:2.5,ptUpper:100,weight:.41}),c=(0,g.useCallback)((()=>{const e=a,t=Y.segmentation.segmentIndex.getActiveSegmentIndex(e);r("thresholdSegmentationByRectangleROITool",{segmentationId:e,config:i,segmentIndex:t})}),[a,i]);return(0,g.useEffect)((()=>{const e=n.getSegmentations();if(!e.length)return;const t=e.find((e=>e.isActive));o(t.id)}),[]),(0,g.useEffect)((()=>{const e=n.EVENTS.SEGMENTATION_ADDED,t=n.EVENTS.SEGMENTATION_UPDATED,a=[];return[e,t].forEach((e=>{const{unsubscribe:t}=n.subscribe(e,(()=>{const e=n.getSegmentations();if(!e.length)return;const t=e.find((e=>e.isActive));o(t.id)}));a.push(t)})),()=>{a.forEach((e=>{e()}))}}),[]),g.createElement("div",{className:"invisible-scrollbar mb-2 flex flex-col overflow-y-auto overflow-x-hidden"},g.createElement(we,{config:i,dispatch:s,runCommand:r}),null!==a&&g.createElement(v.Button,{className:"mt-2 !h-[26px] !w-[75px]",onClick:c},"Run"))};const Ce={id:e,preRegistration({servicesManager:e,commandsManager:t,extensionManager:n,configuration:a={}}){!function({servicesManager:e}){const{measurementService:t,displaySetService:n,cornerstoneViewportService:a}=e.services;(0,Y.addTool)(Y.RectangleROIStartEndThresholdTool),(0,Y.addTool)(Y.CircleROIStartEndThresholdTool);const{RectangleROIStartEndThreshold:o,CircleROIStartEndThreshold:r}=re(t,n,a),i=t.getSource("Cornerstone3DTools","0.1");t.addMapping(i,"RectangleROIStartEndThreshold",o.matchingCriteria,o.toAnnotation,o.toMeasurement),t.addMapping(i,"CircleROIStartEndThreshold",r.matchingCriteria,r.toAnnotation,r.toMeasurement)}({servicesManager:e,commandsManager:t,extensionManager:n,configuration:a})},getToolbarModule:function({commandsManager:e,servicesManager:t}){return[{name:"tmtv.RectangleROIThresholdOptions",defaultComponent:()=>De({commandsManager:e,servicesManager:t})}]},getPanelModule:ee,getHangingProtocolModule:f,getCommandsModule:({servicesManager:e,commandsManager:t,extensionManager:n})=>Te({servicesManager:e,commandsManager:t,extensionManager:n})},Oe=Ce})(),u})()));
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@ohif/extension-tmtv",
3
- "version": "3.9.0-beta.82",
3
+ "version": "3.9.0-beta.83",
4
4
  "description": "OHIF extension for Total Metabolic Tumor Volume",
5
5
  "author": "OHIF",
6
6
  "license": "MIT",
@@ -30,8 +30,8 @@
30
30
  "test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
31
31
  },
32
32
  "peerDependencies": {
33
- "@ohif/core": "3.9.0-beta.82",
34
- "@ohif/ui": "3.9.0-beta.82",
33
+ "@ohif/core": "3.9.0-beta.83",
34
+ "@ohif/ui": "3.9.0-beta.83",
35
35
  "dcmjs": "*",
36
36
  "dicom-parser": "^1.8.9",
37
37
  "hammerjs": "^2.0.8",