npm - @ohif/extension-tmtv - Versions diffs - 3.13.0-beta.105 → 3.13.0-beta.106 - Mend

@ohif/extension-tmtv 3.13.0-beta.105 → 3.13.0-beta.106

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package/dist/ohif-extension-tmtv.umd.js +1 -1
package/package.json +3 -3

package/dist/ohif-extension-tmtv.umd.js CHANGED Viewed

	@@ -1 +1 @@
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e){let{displaySetsInfo:e}=n,o=e.map(({displaySetInstanceUID:e})=>r.getDisplaySetByUID(e));if(o&&0!==o.length&&(t=o.find(e=>"PT"===e.Modality)))break}return t},getPTMetadata:({ptDisplaySet:e})=>{let t=n.getDataSources()[0].getImageIdsForDisplaySet(e)[0],o=eb.get("instance",t);if("PT"===o.Modality)return{SeriesTime:o.SeriesTime,Modality:o.Modality,PatientSex:o.PatientSex,PatientWeight:o.PatientWeight,RadiopharmaceuticalInformationSequence:{RadionuclideTotalDose:o.RadiopharmaceuticalInformationSequence[0].RadionuclideTotalDose,RadionuclideHalfLife:o.RadiopharmaceuticalInformationSequence[0].RadionuclideHalfLife,RadiopharmaceuticalStartTime:o.RadiopharmaceuticalInformationSequence[0].RadiopharmaceuticalStartTime,RadiopharmaceuticalStartDateTime:o.RadiopharmaceuticalInformationSequence[0].RadiopharmaceuticalStartDateTime}}},createNewLabelmapFromPT:async({label:e})=>{let{viewportMatchDetails:t}=i.getMatchDetails(),n=m.getMatchingPTDisplaySet({viewportMatchDetails:t}),o=null;for(let[e,{displaySetsInfo:a}]of t.entries())if(a.some(({displaySetInstanceUID:e})=>e===n.displaySetInstanceUID)){o=e;break}if(!n)return void a.error("No matching PT display set found");let s=c.getSegmentationRepresentations(o),l=r.getDisplaySetByUID(n.displaySetInstanceUID),u=await c.createLabelmapForDisplaySet(l,{label:`Segmentation ${s.length+1}`,segments:{1:{label:`${en().t("Segment")} 1`,active:!0}}});return c.addSegmentationRepresentation(o,{segmentationId:u}),u},thresholdSegmentationByRectangleROITool:({segmentationId:e,config:t,segmentIndex:n})=>{let{representationData:o}=eo.segmentation.state.getSegmentation(e),{displaySetMatchDetails:s}=i.getMatchDetails(),l=s.get("ctDisplaySet"),c=s.get("ptDisplaySet"),u=r.getDisplaySetByUID(l.displaySetInstanceUID),p=r.getDisplaySetByUID(c.displaySetInstanceUID),{volumeId:m}=o[ev.Labelmap],f=ec.cache.getVolume(m),g=d(eT);if(0===g.length)return void a.show({title:"Commands Module",message:"No ROIThreshold Tool is Selected",type:"error"});let{ptLower:y,ptUpper:h,ctLower:v,ctUpper:S}=eu(g,p,t),{imageIds:b}=p,T=ec.cache.getVolumeContainingImageId(b[0]);if(!T)return void a.error("No PT volume found");let{imageIds:I}=u,x=ec.cache.getVolumeContainingImageId(I[0]);if(!x)return void a.error("No CT volume found");let E=T.volume,R=x.volume;return eo.utilities.segmentation.rectangleROIThresholdVolumeByRange(g,f,[{volume:E,lower:y,upper:h},{volume:R,lower:v,upper:S}],{overwrite:!0,segmentIndex:n,segmentationId:e})},calculateTMTV:async({segmentations:e})=>{let t=e.map(e=>e.segmentationId),n=await eo.utilities.segmentation.computeMetabolicStats({segmentationIds:t,segmentIndex:1});return c.setSegmentationGroupStats(t,n),n},exportTMTVReportCSV:async({segmentations:e,tmtv:n,config:o,options:a})=>{let r=t.runCommand("getSegmentationCSVReport",{segmentations:e}),i=0;for(let e in r)i+=r[e].namedStats_lesionGlycolysis.value;let s=[{key:"Total Lesion Glycolysis",value:{tlg:i.toFixed(4)}},{key:"Threshold Configuration",value:{...o}}];void 0!==n&&s.unshift({key:"Total Metabolic Tumor Volume",value:{tmtv:n}}),function(e,t,n={}){let o=e[Object.keys(e)[0]],a=Object.keys(o),r=[a.map(e=>e.toLowerCase().startsWith("namedstats_")?e.substring(11):e).join(",")];Object.values(e).forEach(e=>{let t=[];a.forEach(n=>{t.push(e[n]&&"object"==typeof e[n]?Array.isArray(e[n])?e[n].join(" "):e[n].value&&Array.isArray(e[n].value)?e[n].value.join(" "):e[n].value??e[n]:e[n])}),r.push(t.join(","))}),r.push(""),r.push(""),r.push(""),r.push(`Patient ID,${o.PatientID}`),r.push(`Study Date,${o.StudyDate}`),r.push(""),t.forEach(({key:e,value:t})=>{let n=[];n.push(`${e}`),Object.keys(t).forEach(e=>{n.push(`${e}`),n.push(`${t[e]}`)}),r.push(n.join(","))}),ep(r.join("\n"),{filename:n.filename??`${o.PatientID}_tmtv.csv`})}(r,s,a)},setStartSliceForROIThresholdTool:()=>{let{viewport:e}=p(),{focalPoint:t}=e.getCamera(),n=d(eT)[0],o=eo.annotation.state.getAnnotation(n);o.data.startCoordinate=t,o.invalidated=!0,e.render()},setEndSliceForROIThresholdTool:()=>{let{viewport:e}=p(),t=d(eT)[0],n=eo.annotation.state.getAnnotation(t),o=e.getCamera().focalPoint;n.data.endCoordinate=o,n.invalidated=!0,e.render()},createTMTVRTReport:()=>{let e=eo.annotation.state.getAnnotationManager(),n=[];Object.keys(e.annotations).forEach(t=>{let o=e.annotations[t],a=eT.reduce((e,t)=>[...e,...o[t]??[]],[]);n.push(...a)}),t.runCommand("exportRTReportForAnnotations",{annotations:n})},getSegmentationCSVReport:({segmentations:e})=>{e&&e.length\|\|(e=c.getSegmentations());let t={};for(let n of e){let{label:e,segmentationId:o,representationData:a}=n,r={id:o,label:e};if(!a){t[o]=r;continue}let{cachedStats:i}=n.segments[1]\|\|{};if(i&&Object.entries(i).forEach(([e,t])=>{"object"!=typeof t?r[e]=t:Object.entries(t).forEach(([t,n])=>{r[`${e}_${t}`]=n})}),!n.representationData[ev.Labelmap]){t[o]=r;continue}let s=eo.utilities.segmentation.getReferenceVolumeForSegmentation(o);if(!s\|\|!s.imageIds\|\|!s.imageIds.length){t[o]=r;continue}let l=s.imageIds[0],c=x().classes.MetadataProvider.get("instance",l);if(!c){t[o]=r;continue}t[o]={...r,PatientID:c.PatientID??"000000",PatientName:eS(c.PatientName),StudyInstanceUID:c.StudyInstanceUID,SeriesInstanceUID:c.SeriesInstanceUID,StudyDate:c.StudyDate}}return t},exportRTReportForAnnotations:({annotations:e})=>{eh(e)},setFusionPTColormap:({toolGroupId:e,colormap:n})=>{let o=s.getToolGroup(e);if(!o)return;let{viewportMatchDetails:a}=i.getMatchDetails(),r=m.getMatchingPTDisplaySet({viewportMatchDetails:a});if(!r)return;let c=o.getViewportIds(),u=[];c.forEach(e=>{t.runCommand("setViewportColormap",{viewportId:e,displaySetInstanceUID:r.displaySetInstanceUID,colormap:{name:n}}),u.push(l.getCornerstoneViewport(e))}),u.forEach(e=>{e.render()})}},f={setEndSliceForROIThresholdTool:{commandFn:m.setEndSliceForROIThresholdTool},setStartSliceForROIThresholdTool:{commandFn:m.setStartSliceForROIThresholdTool},getMatchingPTDisplaySet:{commandFn:m.getMatchingPTDisplaySet},getPTMetadata:{commandFn:m.getPTMetadata},createNewLabelmapFromPT:{commandFn:m.createNewLabelmapFromPT},thresholdSegmentationByRectangleROITool:{commandFn:m.thresholdSegmentationByRectangleROITool},calculateTMTV:{commandFn:m.calculateTMTV},exportTMTVReportCSV:{commandFn:m.exportTMTVReportCSV},createTMTVRTReport:{commandFn:m.createTMTVRTReport},getSegmentationCSVReport:{commandFn:m.getSegmentationCSVReport},exportRTReportForAnnotations:{commandFn:m.exportRTReportForAnnotations},setFusionPTColormap:{commandFn:m.setFusionPTColormap}};return{actions:m,definitions:f,defaultContext:"TMTV:CORNERSTONE"}})({servicesManager:e,commandsManager:t,extensionManager:n})}})(),f})());

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-tmtv",
-  "version": "3.13.0-beta.105",
+  "version": "3.13.0-beta.106",
   "description": "OHIF extension for Total Metabolic Tumor Volume",
   "author": "OHIF",
   "license": "MIT",
@@ -26,8 +26,8 @@
     "hammerjs": "2.0.8",
     "prop-types": "15.8.1",
     "react": "18.3.1",
-    "@ohif/core": "3.13.0-beta.105",
-    "@ohif/ui": "3.13.0-beta.105"
+    "@ohif/ui": "3.13.0-beta.106",
+    "@ohif/core": "3.13.0-beta.106"
   },
   "dependencies": {
     "@babel/runtime": "7.29.7",