@ohif/extension-cornerstone-dynamic-volume 3.13.0-beta.98 → 3.13.0

package/dist/ohif-extension-cornerstone-dynamic-volume.umd.js

@@ -1 +1 @@
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P(e){let o=v.volumeId;if(!o)return;let r=a.cache.getVolume(U);r||(r=await a.volumeLoader.createAndCacheDerivedVolume(o,{volumeId:U}));let[s,l]=u,c=Array.from({length:l-s+1},(e,t)=>s+t),p={dimensionGroupNumbers:"SUBTRACT"===e?[s,l]:c,targetVolume:r};if(i.utilities.dynamicVolume.updateVolumeFromTimeData(v,e,p),y)t.runCommand("updateVolumeData",{volume:r}),n.getRenderingEngine().render(),M(y);else{let e={volumeLoaderSchema:r.volumeId.split(":")[0],displaySetInstanceUID:N.current,SOPClassHandlerId:"@ohif/extension-default.sopClassHandlerModule.stack",Modality:v.metadata.Modality,isMultiFrame:!1,numImageFrames:1,uid:N.current,referenceDisplaySetUID:v.volumeId.split(":")[1],madeInClient:!0,FrameOfReferenceUID:v.metadata.FrameOfReferenceUID,isDerived:!0,imageIds:r.imageIds};g(e),M(e)}}(0,p.useEffect)(()=>{let t=n.EVENTS.VIEWPORT_DATA_CHANGED,i=e.services.cineService.EVENTS.CINE_STATE_CHANGED,{unsubscribe:a}=n.subscribe(t,e=>{e.viewportData.data.forEach(e=>{e.volume?.isDynamicVolume()&&(h(e.volume),O.current=e.displaySetInstanceUID,d([1,e.volume.numDimensionGroups]))})}),{unsubscribe:o}=e.services.cineService.subscribe(i,e=>{w(e.isPlaying)});return()=>{a(),o()}},[n,l,e.services.cineService]),(0,p.useEffect)(()=>{let e=a.Enums.Events.DYNAMIC_VOLUME_DIMENSION_GROUP_CHANGED,t=e=>{E(e.detail.dimensionGroupNumber)};return a.eventTarget.addEventListener(e,t),()=>{a.eventTarget.removeEventListener(e,t)}},[]),(0,p.useEffect)(()=>{let e=o.getDisplaySetsUIDsForViewport(c);if(!e?.length)return;let t=e.map(r.getDisplaySetByUID).find(e=>e.isDynamicVolume);if(!t)return;let i=a.cache.getVolumes().find(e=>e.volumeId.includes(t.displaySetInstanceUID));i&&(h(i),O.current=t.displaySetInstanceUID,d([1,i.numDimensionGroups]))},[c,o,r,n,l]);let R=()=>{w(!0);let e=n.getViewportInfo(c);if(!e)return;let{element:t}=e;l.playClip(t,{framesPerSecond:D,viewportId:c})},F=()=>{w(!1);let{element:e}=n.getViewportInfo(c);l.stopClip(e)};return p.createElement(f,{fps:D,isPlaying:b,onPlayPauseChange:e=>{e?R():F()},minFps:1,maxFps:50,onFpsChange:e=>{I(e),F(),R()},currentDimensionGroupNumber:x,numDimensionGroups:v?.numDimensionGroups||1,onDimensionGroupChange:e=>{v.dimensionGroupNumber=e},onGenerate:P,onDynamicClick:C?()=>void t.runCommand("swapComputedWithDynamicDisplaySet"):null,onDoubleRangeChange:d,rangeValues:u})}let v=function({servicesManager:e,commandsManager:t,tab:i}){return p.createElement(p.Fragment,null,p.createElement("div",{className:"text-foreground flex flex-col","data-cy":"dynamic-volume-panel"},p.createElement(S,{commandsManager:t,servicesManager:e})))};var h=l(438),D=l(669);let I=function({commandsManager:e,servicesManager:t}){let i=(0,D.useSegmentations)({servicesManager:t});return i?.length?p.createElement("div",{className:"flex gap-2"},p.createElement("div",{className:"flex h-8 w-full items-center rounded pr-0.5"},p.createElement(m.Button,{size:"sm",variant:"ghost",className:"pl-1.5",onClick:()=>{e.runCommand("exportTimeReportCSV",{segmentations:i,options:{filename:"TimeData.csv"}})}},p.createElement(m.Icons.Export,null),p.createElement("span",{className:"pl-1"},"Time Data"))),p.createElement("div",{className:"flex h-8 w-full items-center rounded pr-0.5"},p.createElement(m.Button,{size:"sm",variant:"ghost",className:"pl-1.5",onClick:()=>{e.runCommand("exportTimeReportCSV",{segmentations:i,summaryStats:!0,options:{filename:"ROIStats.csv"}})}},p.createElement(m.Icons.Export,null),p.createElement("span",{className:"pl-1"},"ROI Stats")))):null},b="2hot",w="dynamic4D-pt",x="dynamic4D-fusion",E="dynamic4D-ct";function C({colormap:e,voiInverted:t}={}){return{blendMode:"MIP",colormap:e,voi:{windowWidth:5,windowCenter:2.5},voiInverted:t}}function T(){let e={colormap:{name:b,opacity:[{value:0,opacity:0},{value:.1,opacity:1},{value:1,opacity:1}]},voiInverted:!1};return[{viewportOptions:{viewportId:"ptAxial",viewportType:"volume",orientation:"axial",toolGroupId:w,initialImageOptions:{preset:"middle"},syncGroups:[{type:"cameraPosition",id:"axialSync",source:!0,target:!0},{type:"voi",id:"ptWLSync",source:!0,target:!0}]},displaySets:[{id:"ptDisplaySet",options:{...C(e)}}]},{viewportOptions:{viewportId:"ptSagittal",viewportType:"volume",orientation:"sagittal",toolGroupId:w,initialImageOptions:{preset:"middle"},syncGroups:[{type:"cameraPosition",id:"sagittalSync",source:!0,target:!0},{type:"voi",id:"ptWLSync",source:!0,target:!0}]},displaySets:[{id:"ptDisplaySet",options:{...C(e)}}]},{viewportOptions:{viewportId:"ptCoronal",viewportType:"volume",orientation:"coronal",toolGroupId:w,initialImageOptions:{preset:"middle"},syncGroups:[{type:"cameraPosition",id:"coronalSync",source:!0,target:!0},{type:"voi",id:"ptWLSync",source:!0,target:!0}]},displaySets:[{id:"ptDisplaySet",options:{...C(e)}}]}]}function N(){let e={colormap:{name:b,opacity:[{value:0,opacity:0},{value:.1,opacity:.8},{value:1,opacity:.8}]}};return[{viewportOptions:{viewportId:"fusionAxial",viewportType:"volume",orientation:"axial",toolGroupId:x,initialImageOptions:{preset:"middle"},syncGroups:[{type:"cameraPosition",id:"axialSync",source:!0,target:!0},{type:"voi",id:"ctWLSync",source:!1,target:!0},{type:"voi",id:"fusionWLSync",source:!0,target:!0},{type:"voi",id:"ptFusionWLSync",source:!1,target:!0,options:{syncInvertState:!1}},{type:"hydrateseg",id:"sameFORId",source:!0,target:!0,options:{matchingRules:["sameFOR"]}}]},displaySets:[{id:"ctDisplaySet"},{options:{...C(e)},id:"ptDisplaySet"}]},{viewportOptions:{viewportId:"fusionSagittal",viewportType:"volume",orientation:"sagittal",toolGroupId:x,initialImageOptions:{preset:"middle"},syncGroups:[{type:"cameraPosition",id:"sagittalSync",source:!0,target:!0},{type:"voi",id:"ctWLSync",source:!1,target:!0},{type:"voi",id:"fusionWLSync",source:!0,target:!0},{type:"voi",id:"ptFusionWLSync",source:!1,target:!0,options:{syncInvertState:!1}},{type:"hydrateseg",id:"sameFORId",source:!0,target:!0,options:{matchingRules:["sameFOR"]}}]},displaySets:[{id:"ctDisplaySet"},{options:{...C(e)},id:"ptDisplaySet"}]},{viewportOptions:{viewportId:"fusionCoronal",viewportType:"volume",orientation:"coronal",toolGroupId:x,initialImageOptions:{preset:"middle"},syncGroups:[{type:"cameraPosition",id:"coronalSync",source:!0,target:!0},{type:"voi",id:"ctWLSync",source:!1,target:!0},{type:"voi",id:"fusionWLSync",source:!0,target:!0},{type:"voi",id:"ptFusionWLSync",source:!1,target:!0,options:{syncInvertState:!1}},{type:"hydrateseg",id:"sameFORId",source:!0,target:!0,options:{matchingRules:["sameFOR"]}}]},displaySets:[{id:"ctDisplaySet"},{options:{...C(e)},id:"ptDisplaySet"}]}]}let O={id:"default4D",locked:!0,hasUpdatedPriorsInformation:!1,name:"Default",createdDate:"2023-01-01T00:00:00.000Z",modifiedDate:"2023-01-01T00:00:00.000Z",availableTo:{},editableBy:{},imageLoadStrategy:"default",protocolMatchingRules:[{attribute:"ModalitiesInStudy",constraint:{contains:["CT","PT"]}}],numberOfPriorsReferenced:-1,displaySetSelectors:{defaultDisplaySetId:{imageMatchingRules:[],seriesMatchingRules:[{attribute:"numImageFrames",constraint:{greaterThan:{value:0}}}]},ctDisplaySet:{imageMatchingRules:[],seriesMatchingRules:[{attribute:"Modality",constraint:{equals:{value:"CT"}},required:!0},{attribute:"isReconstructable",constraint:{equals:{value:!0}},required:!0}]},ptDisplaySet:{imageMatchingRules:[],seriesMatchingRules:[{attribute:"Modality",constraint:{equals:"PT"},required:!0},{attribute:"isReconstructable",constraint:{equals:{value:!0}},required:!0},{attribute:"SeriesDescription",constraint:{contains:"Corrected"}},{weight:2,attribute:"SeriesDescription",constraint:{doesNotContain:{value:"Uncorrected"}}}]},chartDisplaySet:{imageMatchingRules:[],seriesMatchingRules:[{attribute:"Modality",constraint:{equals:{value:"CHT"}},required:!0}]}},stages:[{id:"dataPreparation",name:"Data Preparation",viewportStructure:{layoutType:"grid",properties:{rows:1,columns:3}},viewports:[...T()],createdDate:"2023-01-01T00:00:00.000Z"},{id:"registration",name:"Registration",viewportStructure:{layoutType:"grid",properties:{rows:3,columns:3}},viewports:[...N(),{viewportOptions:{viewportId:"ctAxial",viewportType:"volume",orientation:"axial",toolGroupId:E,initialImageOptions:{preset:"middle"},syncGroups:[{type:"cameraPosition",id:"axialSync",source:!0,target:!0},{type:"voi",id:"ctWLSync",source:!0,target:!0}]},displaySets:[{id:"ctDisplaySet"}]},{viewportOptions:{viewportId:"ctSagittal",viewportType:"volume",orientation:"sagittal",toolGroupId:E,initialImageOptions:{preset:"middle"},syncGroups:[{type:"cameraPosition",id:"sagittalSync",source:!0,target:!0},{type:"voi",id:"ctWLSync",source:!0,target:!0}]},displaySets:[{id:"ctDisplaySet"}]},{viewportOptions:{viewportId:"ctCoronal",viewportType:"volume",orientation:"coronal",toolGroupId:E,initialImageOptions:{preset:"middle"},syncGroups:[{type:"cameraPosition",id:"coronalSync",source:!0,target:!0},{type:"voi",id:"ctWLSync",source:!0,target:!0}]},displaySets:[{id:"ctDisplaySet"}]},...T()],createdDate:"2023-01-01T00:00:00.000Z"},{id:"roiQuantification",name:"ROI Quantification",viewportStructure:{layoutType:"grid",properties:{rows:1,columns:3}},viewports:[...N()],createdDate:"2023-01-01T00:00:00.000Z"},{id:"kineticAnalysis",name:"Kinetic Analysis",viewportStructure:{layoutType:"grid",properties:{rows:2,columns:3,layoutOptions:[{x:0,y:0,width:1/3,height:.5},{x:1/3,y:0,width:1/3,height:.5},{x:2/3,y:0,width:1/3,height:.5},{x:0,y:.5,width:1,height:.5}]}},viewports:[...N(),{viewportOptions:{viewportId:"seriesChart"},displaySets:[{id:"chartDisplaySet",options:{skipLoading:!0}}]}],createdDate:"2023-01-01T00:00:00.000Z"}]},U={id:t,preRegistration:({servicesManager:e,commandsManager:t,configuration:i={}})=>{a.cache.setMaxCacheSize(0x140000000)},getPanelModule:function({commandsManager:e,extensionManager:t,servicesManager:i,configuration:a}){let{toolbarService:n}=i.services;return[{name:"dynamic-volume",iconName:"tab-4d",iconLabel:"4D Workflow",label:"4D Workflow",component:()=>p.createElement(v,{commandsManager:e,servicesManager:i,extensionManager:t})},{name:"dynamic-segmentation",iconName:"tab-segmentation",iconLabel:"Segmentation",label:"Segmentation",component:()=>p.createElement(p.Fragment,null,p.createElement(h.Toolbox,{buttonSectionId:n.sections.dynamicToolbox,title:"Buttons:Threshold Tools"}),p.createElement(D.PanelSegmentation,{servicesManager:i,commandsManager:e,extensionManager:t,configuration:a},p.createElement(I,{servicesManager:i,commandsManager:e})))}]},getHangingProtocolModule:function(){return[{name:O.id,protocol:O}]},getCommandsModule:({servicesManager:t,commandsManager:n,extensionManager:o})=>(({commandsManager:t,servicesManager:n})=>{let{displaySetService:o,viewportGridService:r,segmentationService:s}=n.services,l={...e,getDynamic4DDisplaySet:()=>o.getActiveDisplaySets().find(e=>{let t=e.instances?.[0];return!!t&&(void 0!==t.FrameReferenceTime||void 0!==t.NumberOfTimeSlices||void 0!==t.TemporalPositionIdentifier)}),getComputedDisplaySets:()=>[...o.getDisplaySetCache().values()].filter(e=>e.isDerived),exportTimeReportCSV:({segmentations:e,summaryStats:t})=>{let n,o,r=l.getDynamic4DDisplaySet(),c=r?.displaySetInstanceUID;for(let[e]of a.cache._volumeCache)if(e.includes(c)){n=e;break}n&&(o=a.cache.getVolume(n));let p=r.instances[0],m=[];m.push(`Patient ID,${p.PatientID},`),m.push(`Study Date,${p.StudyDate},`),m.push(`StudyInstanceUID,${p.StudyInstanceUID},`),m.push(`StudyDescription,${p.StudyDescription},`),m.push(`SeriesInstanceUID,${p.SeriesInstanceUID},`),m.push(""),m.push(""),e.forEach(e=>{let a=s.getLabelmapVolume(e.segmentationId),[n,r]=i.utilities.dynamicVolume.getDataInTime(o,{maskVolumeId:a.volumeId});if(t){let t="Operation,Segmentation Label ID",i=o.numTimePoints;for(let e=0;e<i;e++)t+=`,Time Point ${e}`;m.push(t);let a=[],s=[],l=[],c=[],u=[],p=[],d=n.length;for(let e=0;e<i;e++){let t=[],i=0,o=1/0,m=-1/0,y=0,f=0;for(let a=0;a<d;a++){let r=n[a][e];t.push(r),i+=r,r<o&&(o=r,y=a),r>m&&(m=r,f=a)}a.push(i/d),s.push(o),l.push(r[y]),c.push(m),u.push(r[f]),p.push(function(e){let t=e.length,i=e.reduce((e,t)=>e+t,0)/t;return Math.sqrt(e.map(e=>(e-i)**2).reduce((e,t)=>e+t,0)/t)}(t))}let y=`Mean,${e.label}`;for(let e=0;e<i;e++)y+=`,${a[e]}`;m.push(y),y=`Standard Deviation,${e.label}`;for(let e=0;e<i;e++)y+=`,${p[e]}`;m.push(y),y=`Min,${e.label}`;for(let e=0;e<i;e++)y+=`,${s[e]}`;m.push(y),y=`Max,${e.label}`;for(let e=0;e<i;e++)y+=`,${c[e]}`;m.push(y)}else{let t="Pixel Identifier (IJK),Segmentation Label ID",i=o.numTimePoints;for(let e=0;e<i;e++)t+=`,Time Point ${e}`;m.push(t);for(let t=0;t<n.length;t++){let i=`${r[t][0]}_${r[t][1]}_${r[t][2]}`,a=`${i},${e.label}`;for(let e=0;e<n[t].length;e++)a+=`,${n[t][e]}`;m.push(a)}}}),u(m.join("\n"),{filename:`${p.PatientID}.csv`})},swapDynamicWithComputedDisplaySet:({displaySet:e})=>{let i=o.getDisplaySetCache(),a=[i.keys()],{displaySetInstanceUID:n}=e;a.includes(n)||i.set(n,e);let{viewports:s}=r.getState(),c=l.getDynamic4DDisplaySet(),u=[];for(let[e,t]of s){let e=t.viewportOptions,{displaySetInstanceUIDs:i}=t,a=i.indexOf(c.displaySetInstanceUID);if(-1!==a){let o={viewportId:t.viewportId,displaySetInstanceUIDs:[...i.slice(0,a),n,...i.slice(a+1)],viewportOptions:{initialImageOptions:e.initialImageOptions,viewportType:"volume",orientation:e.orientation,background:e.background}};u.push(o)}}t.run("setDisplaySetsForViewports",{viewportsToUpdate:u})},swapComputedWithDynamicDisplaySet:()=>{let e=l.getDynamic4DDisplaySet(),i=o.getDisplaySetCache(),a=[...i.keys()],{displaySetInstanceUID:n}=e;a.includes(n)||i.set(n,e);let{viewports:s}=r.getState(),c=l.getComputedDisplaySets()[0],u=[];for(let[e,t]of s){let e=t.viewportOptions,{displaySetInstanceUIDs:i}=t,a=i.indexOf(c.displaySetInstanceUID);if(-1!==a){let o={viewportId:t.viewportId,displaySetInstanceUIDs:[...i.slice(0,a),n,...i.slice(a+1)],viewportOptions:{initialImageOptions:e.initialImageOptions,viewportType:"volume",orientation:e.orientation,background:e.background}};u.push(o)}}t.run("setDisplaySetsForViewports",{viewportsToUpdate:u})},createNewLabelMapForDynamicVolume:async({label:e})=>{let t,{viewports:i,activeViewportId:a}=r.getState(),n=l.getDynamic4DDisplaySet(),c=n.displaySetInstanceUID;if(i.get(a).displaySetInstanceUIDs.includes(c)&&(t=n),!t){for(let[e,i]of o.getDisplaySetCache())if(i.referenceDisplaySetUID===c){t=i;break}}if(!t)throw Error("No reference display set found based on the dynamic data");let u=o.getDisplaySetByUID(t.displaySetInstanceUID),p=await s.createLabelmapForDisplaySet(u,{label:e}),m=i.values().next().value;return await s.addSegmentationRepresentation(m.viewportId,{segmentationId:p}),p}},c={updateSegmentationsChartDisplaySet:{commandFn:l.updateSegmentationsChartDisplaySet,storeContexts:[],options:{}},exportTimeReportCSV:{commandFn:l.exportTimeReportCSV,storeContexts:[],options:{}},swapDynamicWithComputedDisplaySet:{commandFn:l.swapDynamicWithComputedDisplaySet,storeContexts:[],options:{}},createNewLabelMapForDynamicVolume:{commandFn:l.createNewLabelMapForDynamicVolume,storeContexts:[],options:{}},swapComputedWithDynamicDisplaySet:{commandFn:l.swapComputedWithDynamicDisplaySet,storeContexts:[],options:{}}};return{actions:l,definitions:c,defaultContext:"DYNAMIC-VOLUME:CORNERSTONE"}})({servicesManager:t,commandsManager:n,extensionManager:o})}})(),c})());

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone-dynamic-volume",
-  "version": "3.13.0-beta.98",
+  "version": "3.13.0",
   "description": "OHIF extension for 4D volumes data",
   "author": "OHIF",
   "license": "MIT",
@@ -25,21 +25,21 @@
     "access": "public"
   },
   "peerDependencies": {
-    "dcmjs": "0.49.4",
+    "dcmjs": "0.52.0",
     "dicom-parser": "1.8.21",
     "hammerjs": "2.0.8",
     "prop-types": "15.8.1",
     "react": "18.3.1",
-    "@ohif/core": "3.13.0-beta.98",
-    "@ohif/extension-cornerstone": "3.13.0-beta.98",
-    "@ohif/extension-default": "3.13.0-beta.98",
-    "@ohif/ui": "3.13.0-beta.98",
-    "@ohif/i18n": "3.13.0-beta.98"
+    "@ohif/core": "3.13.0",
+    "@ohif/extension-default": "3.13.0",
+    "@ohif/extension-cornerstone": "3.13.0",
+    "@ohif/ui": "3.13.0",
+    "@ohif/i18n": "3.13.0"
   },
   "dependencies": {
     "@babel/runtime": "7.29.7",
-    "@cornerstonejs/core": "5.0.2",
-    "@cornerstonejs/tools": "5.0.2",
+    "@cornerstonejs/core": "5.6.8",
+    "@cornerstonejs/tools": "5.6.8",
     "classnames": "2.5.1"
   },
   "devDependencies": {