@ohif/extension-cornerstone-dicom-sr 3.9.0-beta.64 → 3.9.0-beta.65

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Files changed (2) hide show
  1. package/dist/ohif-extension-cornerstone-dicom-sr.umd.js +1 -1
  2. package/package.json +5 -5
package/dist/ohif-extension-cornerstone-dicom-sr.umd.js CHANGED
@@ -1,2 +1,2 @@
1
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  /*! For license information please see ohif-extension-cornerstone-dicom-sr.umd.js.LICENSE.txt */
2
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Float32Array(a))}}!0!==e.isLoaded&&await c(s);e.referencedImages=function(e){const t=V(e.find((e=>e.ConceptNameCodeSequence.CodeValue===N.ImageLibrary)).ContentSequence).find((e=>e.ConceptNameCodeSequence.CodeValue===N.ImageLibraryGroup)),n=[];return V(t.ContentSequence).forEach((e=>{const{ReferencedSOPSequence:t}=e;if(t)for(const e of V(t))if(e.ReferencedSOPClassUID){const{ReferencedSOPClassUID:t,ReferencedSOPInstanceUID:r}=e;n.push({ReferencedSOPClassUID:t,ReferencedSOPInstanceUID:r})}})),n}(s),e.measurements=function(e){const t=e.find((e=>e.ConceptNameCodeSequence.CodeValue===N.ImagingMeasurements)),n=function(e){const t={};return e.forEach((e=>{const n=V(e.ContentSequence),r=n.find((e=>e.ConceptNameCodeSequence.CodeValue===N.TrackingUniqueIdentifier));r||console.warn("No Tracking Unique Identifier, skipping ambiguous measurement.");const o=r.UID;void 0===t[o]?t[o]=[...n]:n.forEach((e=>{e.ConceptNameCodeSequence.CodeValue!==N.TrackingUniqueIdentifier&&t[o].push(e)}))})),t}(V(t.ContentSequence).filter((e=>e.ConceptNameCodeSequence.CodeValue===N.MeasurementGroup))),r=[];return Object.keys(n).forEach((e=>{const t=function(e){if(e.some((e=>"SCOORD"===e.ValueType||"SCOORD3D"===e.ValueType)))return function(e){const t=e.find((e=>"SCOORD"===e.ValueType)),n=e.find((e=>"UIDREF"===e.ValueType)),r=e.find((e=>e.ConceptNameCodeSequence.CodeValue===N.TrackingIdentifier));if(!t)return void console.warn(`graphic ValueType ${t.ValueType} not currently supported, skipping annotation.`);const o=e.filter((e=>"NUM"===e.ValueType)),a={loaded:!1,labels:[],coords:[j(t)],TrackingUniqueIdentifier:n.UID,TrackingIdentifier:r.TextValue};return o.forEach((e=>{const{ConceptNameCodeSequence:t,MeasuredValueSequence:n}=e;n&&a.labels.push(_(t,n))})),a}(e);return function(e){const t=e.filter((e=>"NUM"===e.ValueType)),n=e.find((e=>"UIDREF"===e.ValueType)),r=e.find((e=>e.ConceptNameCodeSequence.CodeValue===N.TrackingIdentifier)),o=e.find((e=>e.ConceptNameCodeSequence.CodeValue===N.Finding)),a=e.filter((e=>e.ConceptNameCodeSequence.CodingSchemeDesignator===M.SRT&&e.ConceptNameCodeSequence.CodeValue===N.FindingSite)),i={loaded:!1,labels:[],coords:[],TrackingUniqueIdentifier:n.UID,TrackingIdentifier:r.TextValue};o&&M.CornerstoneCodeSchemes.includes(o.ConceptCodeSequence.CodingSchemeDesignator)&&o.ConceptCodeSequence.CodeValue===N.CornerstoneFreeText&&i.labels.push({label:x,value:o.ConceptCodeSequence.CodeMeaning});if(a.length){const e=a.find((e=>M.CornerstoneCodeSchemes.includes(e.ConceptCodeSequence.CodingSchemeDesignator)&&e.ConceptCodeSequence.CodeValue===N.CornerstoneFreeText));e&&i.labels.push({label:x,value:e.ConceptCodeSequence.CodeMeaning})}return t.forEach((e=>{const{ConceptNameCodeSequence:t,ContentSequence:n,MeasuredValueSequence:r}=e,{ValueType:o}=n;if("SCOORD"===!o)return void console.warn(`Graphic ${o} not currently supported, skipping annotation.`);const a=j(n);a&&i.coords.push(a),r&&i.labels.push(_(t,r))})),i}(e)}(n[e]);t&&r.push(t)})),r}(s);const l=o.getSourceMappings(T,w);e.isHydrated=!1,e.isRehydratable=function(e,t){if(!t||!t.length)return!1;const n=t.map((e=>e.annotationType)),{measurements:r}=e,o=Object.keys(v).filter((e=>"function"==typeof v[e].isValidCornerstoneTrackingIdentifier)),a=[];o.forEach((e=>{n.includes(e)&&a.push(v[e])}));for(let e=0;e<r.length;e++){const{TrackingIdentifier:t}=r[e]||{};if(a.some((e=>{let[n,r]=t.split(":");b.includes(n)&&(n=C);const o=`${n}:${r}`;return e.isValidCornerstoneTrackingIdentifier(o)})))return!0;console.log("Measurement is not rehydratable",t,r[e])}return console.log("No measurements found which were 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o=r.generateReport(e,t,n),a=G().data.datasetToBlob(o),i=URL.createObjectURL(a);window.location.assign(i)},storeMeasurements:async({measurementData:e,dataSource:t,additionalFindingTypes:r,options:a={}})=>{if(Y.info("[DICOMSR] storeMeasurements"),!t||!t.store||!t.store.dicom)return Y.error("[DICOMSR] datasource has no dataSource.store.dicom endpoint!"),Promise.reject({});try{const i=((e,t,n={})=>{const r=W(e,t),o=z.generateReport(r,c.metaData,c.utilities.worldToImageCoords,n),{dataset:a}=o;return void 0===a.SpecificCharacterSet&&(a.SpecificCharacterSet="ISO_IR 192"),a})(e,r,a),{StudyInstanceUID:s,ContentSequence:l}=i;if(!l?.[4].ContentSequence?.length)throw console.log("naturalizedReport missing imaging content",i),new Error("Invalid report, no content");const u=n.getModeCustomization("onBeforeDicomStore")?.value;let d;return"function"==typeof u&&(d=u({measurementData:e,naturalizedReport:i})),await t.store.dicom(i,null,d),s&&t.deleteStudyMetadataPromise(s),o.DicomMetadataStore.addInstances([i],!0),i}catch(e){throw console.warn(e),Y.error(`[DICOMSR] Error while saving the measurements: ${e.message}`),new Error(e.message||"Error while saving the measurements.")}}},a={downloadReport:{commandFn:r.downloadReport},storeMeasurements:{commandFn:r.storeMeasurements}};return{actions:r,definitions:a,defaultContext:"CORNERSTONE_STRUCTURED_REPORT"}};function J(e,t,n){class r extends t{}r.toolName=e,(0,s.addTool)(r)}var Z=d(759),K=d(873);function Q(){return Q=Object.assign?Object.assign.bind():function(e){for(var t=1;t<arguments.length;t++){var n=arguments[t];for(var r in n)({}).hasOwnProperty.call(n,r)&&(e[r]=n[r])}return e},Q.apply(null,arguments)}const 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0)":this.getStyle("color",p,r),lineDash:S,lineWidth:g,...l};Object.keys(a).forEach((e=>{const i=a[e];let l,d;switch(e){case u.POINT:l=this.renderPoint;break;case u.MULTIPOINT:l=this.renderMultipoint;break;case u.POLYLINE:l=this.renderPolyLine;break;case u.CIRCLE:l=this.renderEllipse;break;case u.ELLIPSE:l=this.renderEllipse,d=s.utilities.math.ellipse.getCanvasEllipseCorners;break;default:throw new Error(`Unsupported GraphicType: ${e}`)}const f=l(t,n,i,o,c,y);this.renderTextBox(t,n,f,d,r,p,y)}))}}}_getTextBoxLinesFromLabels(e){const t=Math.min(e.length,5),n=[];for(let r=0;r<t;r++){const t=e[r];n.push(`${g(t.label)}: ${t.value}`)}return n}renderPolyLine(e,t,n,r,o,a){const i={color:a.color,width:a.lineWidth,lineDash:a.lineDash};let c=[];return n.map(((n,o)=>{const a=n.map((e=>t.worldToCanvas(e))),l=`${o}`;2===a.length?s.drawing.drawLine(e,r,l,a[0],a[1],i):s.drawing.drawPolyline(e,r,l,a,i),c=c.concat(a)})),c}renderMultipoint(e,t,n,r,o,a){let i;n.map(((n,o)=>{i=n.map((e=>t.worldToCanvas(e)));s.drawing.drawHandles(e,r,"0",i,{color:a.color})}))}renderPoint(e,t,n,r,o,a){const i=[];return n.map(((n,l)=>{const u=n[0];i.push(t.worldToCanvas(u));const d=c.metaData.get("imagePixelModule",o);let f=10,p=10;if(d){const{columns:e,rows:t}=d;f=e/10,p=t/10}const m=c.utilities.worldToImageCoords(o,u),g=c.utilities.imageToWorldCoords(o,[m[0]+f,m[1]+p]);i.push(t.worldToCanvas(g));const S=`${l}`;s.drawing.drawArrow(e,r,S,i[1],i[0],{color:a.color,width:a.lineWidth})})),i}renderEllipse(e,t,n,r,o,a){let i;return n.map(((n,o)=>{if(0===n.length)return;const c=n,l=t.getRotation();let u;i=c.map((e=>t.worldToCanvas(e))),u=90==l||270==l?s.utilities.math.ellipse.getCanvasEllipseCorners([i[2],i[3],i[0],i[1]]):s.utilities.math.ellipse.getCanvasEllipseCorners(i);const d=`${o}`;s.drawing.drawEllipse(e,r,d,u[0],u[1],{color:a.color,width:a.lineWidth,lineDash:a.lineDash})})),i}renderTextBox(e,t,n,r,o,a,i={}){if(!n||!o)return;const{annotationUID:c,data:l={}}=o,{label:u}=l,{color:d}=i;let f=n;"function"==typeof r&&(f=r(n));const p=this._getTextBoxLinesFromLabels(u),m=s.utilities.drawing.getTextBoxCoordsCanvas(f);o.data?.handles?.textBox?.worldPosition||(o.data.handles.textBox.worldPosition=t.canvasToWorld(m));const g=t.worldToCanvas(o.data.handles.textBox.worldPosition),S=this.getLinkedTextBoxStyle(a,o),y=s.drawing.drawLinkedTextBox(e,c,"1",p,g,n,{},{...S,color:d}),{x:I,y:h,width:v,height:b}=y;o.data.handles.textBox.worldBoundingBox={topLeft:t.canvasToWorld([I,h]),topRight:t.canvasToWorld([I+v,h]),bottomLeft:t.canvasToWorld([I,h+b]),bottomRight:t.canvasToWorld([I+v,h+b])}}}p.toolName="DICOMSRDisplay";const m={"Short Axis":"W: ","Long Axis":"L: ",AREA:"Area: ",Length:"",CORNERSTONEFREETEXT:""};function g(e){const t=m[e];return void 0!==t?t:e}const S={DICOMSRDisplay:p.toolName,SRLength:"SRLength",SRBidirectional:"SRBidirectional",SREllipticalROI:"SREllipticalROI",SRCircleROI:"SRCircleROI",SRArrowAnnotate:"SRArrowAnnotate",SRAngle:"SRAngle",SRCobbAngle:"SRCobbAngle",SRRectangleROI:"SRRectangleROI",SRPlanarFreehandROI:"SRPlanarFreehandROI"},y=1e-4;function I(e,t,n){const r=S.DICOMSRDisplay,o={TrackingUniqueIdentifier:e.TrackingUniqueIdentifier,renderableData:{},labels:e.labels,imageId:t};e.coords.forEach((e=>{const{GraphicType:n,GraphicData:r}=e;void 0===o.renderableData[n]&&(o.renderableData[n]=[]),o.renderableData[n].push(function(e,t,n){let r;switch(e){case u.POINT:case u.MULTIPOINT:case u.POLYLINE:r=[];for(let e=0;e<t.length;e+=2){const o=c.utilities.imageToWorldCoords(n,[t[e],t[e+1]]);r.push(o)}break;case u.CIRCLE:{const e=[];for(let r=0;r<t.length;r+=2){const o=c.utilities.imageToWorldCoords(n,[t[r],t[r+1]]);e.push(o)}const o=e[0],a=e[1],s=i.vec3.distance(o,a),l=c.metaData.get("imagePlaneModule",n);if(!l)throw new Error("No imagePlaneModule found");const{columnCosines:u,rowCosines:d}=l,f=i.vec3.create();i.vec3.scaleAndAdd(f,o,u,s);const p=i.vec3.create();i.vec3.scaleAndAdd(p,o,u,-s);const m=i.vec3.create();i.vec3.scaleAndAdd(m,o,d,s);const g=i.vec3.create();i.vec3.scaleAndAdd(g,o,d,-s),r=[f,p,m,g];break}case u.ELLIPSE:{const e=[];for(let r=0;r<t.length;r+=2){const o=c.utilities.imageToWorldCoords(n,[t[r],t[r+1]]);e.push(o)}const o=i.vec3.fromValues(...e[0]),a=i.vec3.fromValues(...e[1]),s=i.vec3.fromValues(...e[2]),l=i.vec3.fromValues(...e[3]),u=i.vec3.create();i.vec3.sub(u,a,o),i.vec3.normalize(u,u);const d=i.vec3.create();i.vec3.sub(d,l,s),i.vec3.normalize(d,d);const f=c.metaData.get("imagePlaneModule",n);if(!f)throw new Error("imageId does not have imagePlaneModule metadata");const{columnCosines:p}=f,m=i.vec3.fromValues(...p),g=Math.abs(i.vec3.dot(m,u)),S=Math.abs(i.vec3.dot(m,d)),I=Math.abs(g),h=Math.abs(S);r=[],Math.abs(I-1)<y?r=[e[0],e[1],e[2],e[3]]:Math.abs(h-1)<y?r=[e[2],e[3],e[0],e[1]]:console.warn("OBLIQUE ELLIPSE NOT YET SUPPORTED");break}default:console.warn("Unsupported GraphicType:",e)}return r}(n,r,t))}));const a=c.metaData.get("imagePlaneModule",t),l={annotationUID:e.TrackingUniqueIdentifier,highlighted:!1,isLocked:!1,invalidated:!1,metadata:{toolName:r,FrameOfReferenceUID:a.frameOfReferenceUID,referencedImageId:t},data:{label:e.labels,handles:{textBox:e.textBox??{}},cachedStats:{},TrackingUniqueIdentifier:o.TrackingUniqueIdentifier,renderableData:o.renderableData,frameNumber:n}};s.annotation.state.getAnnotationManager().addAnnotation(l)}var h=d(32);const v=h.adaptersSR.Cornerstone3D.MeasurementReport.CORNERSTONE_TOOL_CLASSES_BY_UTILITY_TYPE,b=["cornerstoneTools@^4.0.0"],C=v.CORNERSTONE_3D_TAG;var R=d(660);const{CodeScheme:E}=h.adaptersSR.Cornerstone3D,{ImageSet:O,MetadataProvider:T}=o.classes,D=["1.2.840.10008.5.1.4.1.1.88.11","1.2.840.10008.5.1.4.1.1.88.22","1.2.840.10008.5.1.4.1.1.88.33","1.2.840.10008.5.1.4.1.1.88.34"],w="Cornerstone3DTools",N="0.1",U=(e,t)=>{t.forEach((t=>{if(t.StudyInstanceUID!==e)throw console.warn("Not all instances have the same UID",e,t),new Error(`Instances ${t.SOPInstanceUID} does not belong to ${e}`)}))},M={SRT:"SRT",CornerstoneCodeSchemes:[E.CodingSchemeDesignator,"CST4"]},x={INFERRED_FROM:"INFERRED FROM",CONTAINS:"CONTAINS"},P="CORNERSTONEFREETEXT";function k(e,t){return this.instances.push(...e),o.utils.sortStudyInstances(this.instances),this.instance=this.instances[this.instances.length-1],this.isLoaded=!1,this}function A(e,t,n){if(!e||!e.length)throw new Error("No instances were provided");o.utils.sortStudyInstances(e);const a=e[e.length-1],{StudyInstanceUID:i,SeriesInstanceUID:s,SOPInstanceUID:c,SeriesDescription:l,SeriesNumber:u,SeriesDate:d,ConceptNameCodeSequence:f,SOPClassUID:p}=a;U(a.StudyInstanceUID,e);const m=f?.CodeValue===R.Z.ImagingMeasurementReport,g={Modality:"SR",displaySetInstanceUID:o.utils.guid(),SeriesDescription:l,SeriesNumber:u,SeriesDate:d,SOPInstanceUID:c,SeriesInstanceUID:s,StudyInstanceUID:i,SOPClassHandlerId:r,SOPClassUID:p,instances:e,referencedImages:null,measurements:null,isDerivedDisplaySet:!0,isLoaded:!1,isImagingMeasurementReport:m,sopClassUids:D,instance:a,addInstances:k};return g.load=()=>async function(e,t,n){const{displaySetService:r,measurementService:o}=t.services,a=n.getDataSources(),i=a[0],{ContentSequence:s}=e.instance;async function c(t,n=null,r=null){for(const o in t)if("object"==typeof t[o]&&null!==t[o])await c(t[o],t,o);else if(Array.isArray(t[o]))await Promise.all(t[o].map((e=>c(e,t,o))));else if("BulkDataURI"===o){const a=await i.retrieve.bulkDataURI({BulkDataURI:t[o],StudyInstanceUID:e.instance.StudyInstanceUID,SeriesInstanceUID:e.instance.SeriesInstanceUID,SOPInstanceUID:e.instance.SOPInstanceUID});n&&r&&(n[r]=new Float32Array(a))}}!0!==e.isLoaded&&await c(s);e.isImagingMeasurementReport?(e.referencedImages=function(e){const t=e.find((e=>e.ConceptNameCodeSequence.CodeValue===R.Z.ImageLibrary));if(!t)return[];const n=V(t.ContentSequence).find((e=>e.ConceptNameCodeSequence.CodeValue===R.Z.ImageLibraryGroup)),r=[];return V(n.ContentSequence).forEach((e=>{const{ReferencedSOPSequence:t}=e;if(t)for(const e of V(t))if(e.ReferencedSOPClassUID){const{ReferencedSOPClassUID:t,ReferencedSOPInstanceUID:n}=e;r.push({ReferencedSOPClassUID:t,ReferencedSOPInstanceUID:n})}})),r}(s),e.measurements=function(e){const t=e.find((e=>e.ConceptNameCodeSequence.CodeValue===R.Z.ImagingMeasurements));if(!t)return[];const n=function(e){const t={};return e.forEach((e=>{const n=V(e.ContentSequence),r=n.find((e=>e.ConceptNameCodeSequence.CodeValue===R.Z.TrackingUniqueIdentifier));r||console.warn("No Tracking Unique Identifier, skipping ambiguous measurement.");const o=r.UID;void 0===t[o]?t[o]=[...n]:n.forEach((e=>{e.ConceptNameCodeSequence.CodeValue!==R.Z.TrackingUniqueIdentifier&&t[o].push(e)}))})),t}(V(t.ContentSequence).filter((e=>e.ConceptNameCodeSequence.CodeValue===R.Z.MeasurementGroup))),r=[];return Object.keys(n).forEach((e=>{const t=function(e){if(e.some((e=>"SCOORD"===e.ValueType||"SCOORD3D"===e.ValueType)))return function(e){const t=e.find((e=>"SCOORD"===e.ValueType)),n=e.find((e=>"UIDREF"===e.ValueType)),r=e.find((e=>e.ConceptNameCodeSequence.CodeValue===R.Z.TrackingIdentifier));if(!t)return void console.warn(`graphic ValueType ${t.ValueType} not currently supported, skipping annotation.`);const o=e.filter((e=>"NUM"===e.ValueType)),a={loaded:!1,labels:[],coords:[L(t)],TrackingUniqueIdentifier:n.UID,TrackingIdentifier:r.TextValue};return o.forEach((e=>{const{ConceptNameCodeSequence:t,MeasuredValueSequence:n}=e;n&&a.labels.push(_(t,n))})),a}(e);return function(e){const t=e.filter((e=>"NUM"===e.ValueType)),n=e.find((e=>"UIDREF"===e.ValueType)),r=e.find((e=>e.ConceptNameCodeSequence.CodeValue===R.Z.TrackingIdentifier)),o=e.find((e=>e.ConceptNameCodeSequence.CodeValue===R.Z.Finding)),a=e.filter((e=>e.ConceptNameCodeSequence.CodingSchemeDesignator===M.SRT&&e.ConceptNameCodeSequence.CodeValue===R.Z.FindingSite)),i={loaded:!1,labels:[],coords:[],TrackingUniqueIdentifier:n.UID,TrackingIdentifier:r.TextValue};o&&M.CornerstoneCodeSchemes.includes(o.ConceptCodeSequence.CodingSchemeDesignator)&&o.ConceptCodeSequence.CodeValue===R.Z.CornerstoneFreeText&&i.labels.push({label:P,value:o.ConceptCodeSequence.CodeMeaning});if(a.length){const e=a.find((e=>M.CornerstoneCodeSchemes.includes(e.ConceptCodeSequence.CodingSchemeDesignator)&&e.ConceptCodeSequence.CodeValue===R.Z.CornerstoneFreeText));e&&i.labels.push({label:P,value:e.ConceptCodeSequence.CodeMeaning})}return t.forEach((e=>{const{ConceptNameCodeSequence:t,ContentSequence:n,MeasuredValueSequence:r}=e,{ValueType:o}=n;if("SCOORD"===!o)return void console.warn(`Graphic ${o} not currently supported, skipping annotation.`);const a=L(n);a&&i.coords.push(a),r&&i.labels.push(_(t,r))})),i}(e)}(n[e]);t&&r.push(t)})),r}(s)):(e.referencedImages=[],e.measurements=[]);const l=o.getSourceMappings(w,N);e.isHydrated=!1,e.isRehydratable=function(e,t){if(!t||!t.length)return!1;const n=t.map((e=>e.annotationType)),{measurements:r}=e,o=Object.keys(v).filter((e=>"function"==typeof v[e].isValidCornerstoneTrackingIdentifier)),a=[];o.forEach((e=>{n.includes(e)&&a.push(v[e])}));for(let e=0;e<r.length;e++){const{TrackingIdentifier:t}=r[e]||{};if(a.some((e=>{let[n,r]=t.split(":");b.includes(n)&&(n=C);const o=`${n}:${r}`;return e.isValidCornerstoneTrackingIdentifier(o)})))return!0;console.log("Measurement is not rehydratable",t,r[e])}return console.log("No measurements found which were rehydratable"),!1}(e,l),e.isLoaded=!0,r.activeDisplaySets.forEach((n=>{q(e,n,i,t)})),r.subscribe(r.EVENTS.DISPLAY_SETS_ADDED,(n=>{const{displaySetsAdded:r}=n;r.forEach((n=>{q(e,n,i,t)}))}))}(g,t,n),[g]}function q(e,t,n,r){const{customizationService:o}=r.services;let a=e.measurements.filter((e=>!1===e.loaded));if(0===a.length)return;if(!t instanceof O)return;if(t.unsupported)return;const{sopClassUids:i}=t;if(a=a.filter((e=>e.coords.some((e=>i.includes(e.ReferencedSOPSequence.ReferencedSOPClassUID))))),0===a.length)return;const s=[];a.forEach((e=>{const{coords:t}=e;t.forEach((e=>{const t=e.ReferencedSOPSequence.ReferencedSOPInstanceUID;s.includes(t)||s.push(t)}))}));const c=n.getImageIdsForDisplaySet(t);for(const n of c){if(!a.length)return;const{SOPInstanceUID:r,frameNumber:i}=T.getUIDsFromImageID(n);if(s.includes(r))for(let s=a.length-1;s>=0;s--){let c=a[s];const l=o.getModeCustomization("onBeforeSRAddMeasurement")?.value;if("function"==typeof l&&(c=l({measurement:c,StudyInstanceUID:e.StudyInstanceUID,SeriesInstanceUID:e.SeriesInstanceUID})),j(c,r,i)){const e=c.coords[0].ReferencedSOPSequence&&c.coords[0].ReferencedSOPSequence?.ReferencedFrameNumber||1;I(c,n,e),c.loaded=!0,c.imageId=n,c.displaySetInstanceUID=t.displaySetInstanceUID,c.ReferencedSOPInstanceUID=c.coords[0].ReferencedSOPSequence.ReferencedSOPInstanceUID,c.frameNumber=e,delete c.coords,a.splice(s,1)}}}}function j(e,t,n){const{coords:r}=e,o=e.coords[0].ReferencedSOPSequence&&e.coords[0].ReferencedSOPSequence?.ReferencedFrameNumber||1;if(n&&Number(n)!==Number(o))return!1;for(let e=0;e<r.length;e++){const n=r[e],{ReferencedSOPInstanceUID:o}=n.ReferencedSOPSequence;if(o===t)return!0}}function L(e){const{ValueType:t,RelationshipType:n,GraphicType:r,GraphicData:o}=e;if(n!=x.INFERRED_FROM&&n!=x.CONTAINS)return void console.warn(`Relationshiptype === ${n}. Cannot deal with NON TID-1400 SCOORD group with RelationshipType !== "INFERRED FROM" or "CONTAINS"`);const a={ValueType:t,GraphicType:r,GraphicData:o};if("SCOORD"===t){const{ReferencedSOPSequence:t}=e.ContentSequence;a.ReferencedSOPSequence=t}else if("SCOORD3D"===t){const{ReferencedFrameOfReferenceSequence:t}=e.ContentSequence;a.ReferencedFrameOfReferenceSequence=t}return a}function _(e,t){const{CodeMeaning:n}=e,{NumericValue:r,MeasurementUnitsCodeSequence:o}=t,{CodeValue:a}=o;return{label:n,value:`${r?Number(r).toFixed(2):""} ${a}`}}function V(e){return e?Array.isArray(e)?e:[e]:[]}const F=function({servicesManager:e,extensionManager:t}){return[{name:n,sopClassUids:D,getDisplaySetsFromSeries:n=>A(n,e,t)}]},$={id:"@ohif/sr",name:"SR Key Images",protocolMatchingRules:[],toolGroupIds:["default"],numberOfPriorsReferenced:0,defaultViewport:{viewportOptions:{viewportType:"stack",toolGroupId:"default",allowUnmatchedView:!0},displaySets:[{id:"srDisplaySetId",matchedDisplaySetsIndex:-1}]},displaySetSelectors:{srDisplaySetId:{seriesMatchingRules:[{attribute:"Modality",constraint:{equals:"SR"}}]}},stages:[{name:"SR Key Images",viewportStructure:{layoutType:"grid",properties:{rows:1,columns:1}},viewports:[{viewportOptions:{allowUnmatchedView:!0},displaySets:[{id:"srDisplaySetId"}]}]}]};var B=d(836),G=d.n(B);const{log:Z}=a();const z=function(e,t){const n={};function r(r,o){if(!r.metadata?.referencedImageId)return void Z.warn(`[DICOMSR] No referencedImageId found for ${o} ${r.id}`);const a=r.metadata.referencedImageId;n[a]||(n[a]={});const i=n[a];i[o]||(i[o]={data:[]});const s=e.find((e=>e.uid===r.annotationUID)),c=i[o].data;let{finding:l}=s;const u=[];s.label&&(t.includes(o)?l={CodeValue:"CORNERSTONEFREETEXT",CodingSchemeDesignator:"CORNERSTONEJS",CodeMeaning:s.label}:u.push({CodeValue:"CORNERSTONEFREETEXT",CodingSchemeDesignator:"CORNERSTONEJS",CodeMeaning:s.label})),s.findingSites&&u.push(...s.findingSites);const d=Object.assign({},r,{finding:l,findingSites:u});c.push(d)}const o=e.map((e=>e.uid)).slice(),a=s.annotation.state.getAnnotationManager(),i=a.getFramesOfReference();for(let e=0;e<i.length;e++){const t=i[e],s=a.getAnnotations(t),c=Object.keys(s);for(let e=0;e<c.length;e++){const t=c[e],a=s[t];if(a)for(let e=0;e<a.length;e++){const i=a[e],s=o.findIndex((e=>e===i.annotationUID));if(-1!==s&&(r(i,t),o.splice(s,1),!o.length))return n}}}return n},{MeasurementReport:W}=h.adaptersSR.Cornerstone3D,{log:H}=a(),Y=e=>{const{servicesManager:t}=e,{customizationService:n}=t.services,r={downloadReport:({measurementData:e,additionalFindingTypes:t,options:n={}})=>{const o=r.generateReport(e,t,n),a=G().data.datasetToBlob(o),i=URL.createObjectURL(a);window.location.assign(i)},storeMeasurements:async({measurementData:e,dataSource:t,additionalFindingTypes:r,options:a={}})=>{if(H.info("[DICOMSR] storeMeasurements"),!t||!t.store||!t.store.dicom)return H.error("[DICOMSR] datasource has no dataSource.store.dicom endpoint!"),Promise.reject({});try{const i=((e,t,n={})=>{const r=z(e,t),o=W.generateReport(r,c.metaData,c.utilities.worldToImageCoords,n),{dataset:a}=o;return void 0===a.SpecificCharacterSet&&(a.SpecificCharacterSet="ISO_IR 192"),a})(e,r,a),{StudyInstanceUID:s,ContentSequence:l}=i;if(!l?.[4].ContentSequence?.length)throw console.log("naturalizedReport missing imaging content",i),new Error("Invalid report, no content");const u=n.getModeCustomization("onBeforeDicomStore")?.value;let d;return"function"==typeof u&&(d=u({measurementData:e,naturalizedReport:i})),await t.store.dicom(i,null,d),s&&t.deleteStudyMetadataPromise(s),o.DicomMetadataStore.addInstances([i],!0),i}catch(e){throw console.warn(e),H.error(`[DICOMSR] Error while saving the measurements: ${e.message}`),new Error(e.message||"Error while saving the measurements.")}}},a={downloadReport:{commandFn:r.downloadReport},storeMeasurements:{commandFn:r.storeMeasurements}};return{actions:r,definitions:a,defaultContext:"CORNERSTONE_STRUCTURED_REPORT"}};function X(e,t,n){class r extends t{}r.toolName=e,(0,s.addTool)(r)}var J=d(759),K=d(873);function Q(){return Q=Object.assign?Object.assign.bind():function(e){for(var t=1;t<arguments.length;t++){var n=arguments[t];for(var r in n)({}).hasOwnProperty.call(n,r)&&(e[r]=n[r])}return e},Q.apply(null,arguments)}const ee=e.lazy((()=>Promise.resolve().then(d.bind(d,380)))),te=t=>e.createElement(e.Suspense,{fallback:e.createElement("div",null,"Loading...")},e.createElement(ee,t)),ne={id:t,onModeEnter:function({servicesManager:e}){const{displaySetService:t}=e.services;[...t.getDisplaySetCache().values()].filter((e=>e.SOPClassHandlerId===r)).forEach((e=>{e.isHydrated=!1}))},preRegistration:function({configuration:e={}}){X(S.DICOMSRDisplay,p),X(S.SRLength,s.LengthTool),X(S.SRBidirectional,s.BidirectionalTool),X(S.SREllipticalROI,s.EllipticalROITool),X(S.SRCircleROI,s.CircleROITool),X(S.SRArrowAnnotate,s.ArrowAnnotateTool),X(S.SRAngle,s.AngleTool),X(S.SRPlanarFreehandROI,s.PlanarFreehandROITool),X(S.SRRectangleROI,s.RectangleROITool),X(S.SRCobbAngle,s.CobbAngleTool);const t={lineDash:"4,4"};s.annotation.config.style.setToolGroupToolStyles("SRToolGroup",{[S.DICOMSRDisplay]:t,SRLength:t,SRBidirectional:t,SREllipticalROI:t,SRCircleROI:t,SRArrowAnnotate:t,SRCobbAngle:t,SRAngle:t,SRPlanarFreehandROI:t,SRRectangleROI:t,global:{}})},getViewportModule:({servicesManager:t,extensionManager:n})=>[{name:"dicom-sr",component:r=>e.createElement(te,Q({servicesManager:t,extensionManager:n},r))}],getCommandsModule:Y,getSopClassHandlerModule:F,getUtilityModule:({servicesManager:e})=>[{name:"tools",exports:{toolNames:S}}]}})(),f=d.O(f)})()));
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@ohif/extension-cornerstone-dicom-sr",
3
- "version": "3.9.0-beta.64",
3
+ "version": "3.9.0-beta.65",
4
4
  "description": "OHIF extension for an SR Cornerstone Viewport",
5
5
  "author": "OHIF",
6
6
  "license": "MIT",
@@ -34,10 +34,10 @@
34
34
  "test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
35
35
  },
36
36
  "peerDependencies": {
37
- "@ohif/core": "3.9.0-beta.64",
38
- "@ohif/extension-cornerstone": "3.9.0-beta.64",
39
- "@ohif/extension-measurement-tracking": "3.9.0-beta.64",
40
- "@ohif/ui": "3.9.0-beta.64",
37
+ "@ohif/core": "3.9.0-beta.65",
38
+ "@ohif/extension-cornerstone": "3.9.0-beta.65",
39
+ "@ohif/extension-measurement-tracking": "3.9.0-beta.65",
40
+ "@ohif/ui": "3.9.0-beta.65",
41
41
  "dcmjs": "*",
42
42
  "dicom-parser": "^1.8.9",
43
43
  "hammerjs": "^2.0.8",