npm - @ohif/extension-cornerstone-dicom-sr - Versions diffs - 3.14.0-beta.3 → 3.14.0-beta.37 - Mend

@ohif/extension-cornerstone-dicom-sr 3.14.0-beta.3 → 3.14.0-beta.37

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package/dist/ohif-extension-cornerstone-dicom-sr.umd.js +1 -1
package/package.json +7 -9

package/dist/ohif-extension-cornerstone-dicom-sr.umd.js CHANGED Viewed

	@@ -1 +1 @@
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0,handles:{textBox:e.textBox??{},points:d[0]},cachedStats:{},frameNumber:n,renderableData:o,TrackingUniqueIdentifier:i,labels:e.labels}};s.annotation.state.addAnnotation(g)}let{MeasurementReport:y}=i.adaptersSR.Cornerstone3D,I=JSON.parse('{"UU":"@ohif/extension-cornerstone-dicom-sr"}').UU,R="dicom-sr",C=`${I}.sopClassHandlerModule.${R}`,O="dicom-sr-3d",D=`${I}.sopClassHandlerModule.${O}`,{sopClassDictionary:E}=t.utils,{CORNERSTONE_3D_TOOLS_SOURCE_NAME:T,CORNERSTONE_3D_TOOLS_SOURCE_VERSION:v}=o.Enums,{MetadataProvider:b}=t.classes,{TEXT_ANNOTATION_POSITION:w,COMMENT_CODE:N,CodeScheme:U}=i.adaptersSR.Cornerstone3D,M=[E.BasicTextSR,E.EnhancedSR,E.ComprehensiveSR,E.Comprehensive3DSR];function P(e,n){return this.instances.push(...e),t.utils.sortStudyInstances(this.instances),this.instance=this.instances[this.instances.length-1],this.isLoaded=!1,this}async function x(e,n,r){let{displaySetService:a,measurementService:o}=n.services,i=r.getDataSources()[0],{ContentSequence:s}=e.instance;async function l(t,n=null,r=null){for(let a in t)if("object"==typeof t[a]&&null!==t[a])await l(t[a],t,a);else if(Array.isArray(t[a]))await Promise.all(t[a].map(e=>l(e,t,a)));else if("BulkDataURI"===a){let o=await i.retrieve.bulkDataURI({BulkDataURI:t[a],StudyInstanceUID:e.instance.StudyInstanceUID,SeriesInstanceUID:e.instance.SeriesInstanceUID,SOPInstanceUID:e.instance.SOPInstanceUID});n&&r&&(n[r]=new Float32Array(o))}}!0!==e.isLoaded&&await l(s),e.isImagingMeasurementReport?(e.referencedImages=function(e){let t=e.find(e=>e.ConceptNameCodeSequence.CodeValue===u.n7.ImageLibrary);if(!t)return[];let n=k(t.ContentSequence).find(e=>e.ConceptNameCodeSequence.CodeValue===u.n7.ImageLibraryGroup);if(!n)return[];let r=[];return k(n.ContentSequence).forEach(e=>{let{ReferencedSOPSequence:t}=e;if(t){for(let e of k(t))if(e.ReferencedSOPClassUID){let{ReferencedSOPClassUID:t,ReferencedSOPInstanceUID:n}=e;r.push({ReferencedSOPClassUID:t,ReferencedSOPInstanceUID:n})}}}),r}(s),e.measurements=function(e){var t;let n,r=e.find(e=>e.ConceptNameCodeSequence.CodeValue===u.n7.ImagingMeasurements);if(!r)return[];let a=(t=k(r.ContentSequence).filter(e=>e.ConceptNameCodeSequence.CodeValue===u.n7.MeasurementGroup),n={},t.forEach(e=>{let t=k(e.ContentSequence),r=t.find(e=>e.ConceptNameCodeSequence.CodeValue===u.n7.TrackingUniqueIdentifier);r\|\|console.warn("No Tracking Unique Identifier, skipping ambiguous measurement.");let a=r.UID;void 0===n[a]?n[a]=[...t]:t.forEach(e=>{e.ConceptNameCodeSequence.CodeValue!==u.n7.TrackingUniqueIdentifier&&n[a].push(e)})}),n),o=[];return Object.keys(a).forEach(e=>{var t;let n=(t=a[e]).some(e=>{var t;let n;return("SCOORD"===(t=e).ValueType\|\|"SCOORD3D"===t.ValueType)&&!((n=e.ConceptNameCodeSequence[0])&&n.CodeValue===w.value&&n.CodingSchemeDesignator===w.schemeDesignator)})?function(e){let t=e.find(e=>"SCOORD"===e.ValueType\|\|"SCOORD3D"===e.ValueType),n=e.find(e=>"UIDREF"===e.ValueType),r=e.find(e=>e.ConceptNameCodeSequence.CodeValue===u.n7.TrackingIdentifier);if(!t)return void console.warn(`graphic ValueType ${t.ValueType} not currently supported, skipping annotation.`);let a=e.filter(e=>"NUM"===e.ValueType),{ConceptNameCodeSequence:o}=t,{CodeValue:i,CodingSchemeDesignator:s}=o,l=`${s}:${i}`,c=q(t),d="SCOORD3D"===c.ValueType,p=c.GraphicData.length/(d?3:2),f={loaded:!1,labels:[],coords:[c],TrackingUniqueIdentifier:n.UID,TrackingIdentifier:r.TextValue,graphicCode:l,is3DMeasurement:d,pointsLength:p,graphicType:c.GraphicType};a.forEach(e=>{let{ConceptNameCodeSequence:t,MeasuredValueSequence:n}=e;n&&f.labels.push(F(t,n))});let S=e.filter(e=>e.ConceptNameCodeSequence.CodingSchemeDesignator===u.bY.SCT&&e.ConceptNameCodeSequence.CodeValue===u.n7.FindingSiteSCT);return S.length&&f.labels.push({label:u.n7.FindingSiteSCT,value:S[0].ConceptCodeSequence.CodeMeaning}),f}(t):function(e){let t=e.filter(e=>"NUM"===e.ValueType),n=e.find(e=>"UIDREF"===e.ValueType),r=e.find(e=>e.ConceptNameCodeSequence.CodeValue===u.n7.TrackingIdentifier),a=e.find(e=>e.ConceptNameCodeSequence.CodeValue===u.n7.Finding),o=e.filter(e=>e.ConceptNameCodeSequence.CodingSchemeDesignator===u.bY.SRT&&e.ConceptNameCodeSequence.CodeValue===u.n7.FindingSite),i=e.filter(e=>e.ConceptNameCodeSequence.CodingSchemeDesignator===N.schemeDesignator&&e.ConceptNameCodeSequence.CodeValue===N.value),s={loaded:!1,labels:[],coords:[],TrackingUniqueIdentifier:n.UID,TrackingIdentifier:r.TextValue};if(i)for(let e of i)e.TextValue&&s.labels.push({label:e.TextValue,value:""});if(a&&u.bY.CornerstoneCodeSchemes.includes(a.ConceptCodeSequence.CodingSchemeDesignator)&&a.ConceptCodeSequence.CodeValue===U.codeValues.CORNERSTONEFREETEXT&&s.labels.push({label:U.codeValues.CORNERSTONEFREETEXT,value:a.ConceptCodeSequence.CodeMeaning}),o.length){let e=o.find(e=>u.bY.CornerstoneCodeSchemes.includes(e.ConceptCodeSequence.CodingSchemeDesignator)&&e.ConceptCodeSequence.CodeValue===U.codeValues.CORNERSTONEFREETEXT);e&&s.labels.push({label:U.codeValues.CORNERSTONEFREETEXT,value:e.ConceptCodeSequence.CodeMeaning})}return t.forEach(e=>{let{ConceptNameCodeSequence:t,ContentSequence:n,MeasuredValueSequence:r}=e;if(n){let e=Array.isArray(n)?n.find(e=>("SCOORD"===e.ValueType\|\|"SCOORD3D"===e.ValueType)&&!e.ConceptNameCodeSequence)??n.find(e=>"SCOORD"===e.ValueType\|\|"SCOORD3D"===e.ValueType):n;if(!e)return void console.warn("ContentSequence array contains no SCOORD or SCOORD3D entry, skipping annotation.");let{ValueType:t}=e;if("SCOORD"!==t&&"SCOORD3D"!==t)return void console.warn(`Graphic ${t} not currently supported, skipping annotation.`);let r=q(e);r&&s.coords.push(r)}r&&s.labels.push(F(t,r))}),s}(t);n&&o.push(n)}),o}(s)):(e.referencedImages=[],e.measurements=[]);let{predecessorImageId:c}=e;for(let t of e.measurements)t.predecessorImageId=c;let d=o.getSourceMappings(T,v);e.isHydrated=!1,e.isRehydratable=function(e,t){if(!t\|\|!t.length)return!1;let n=new Set;for(let e of t)n.add(e.annotationType);let{measurements:r}=e;for(let e=0;e<r.length;e++){let t=r[e];if(!t)continue;let{TrackingIdentifier:a="",graphicType:o,graphicCode:i,pointsLength:s}=t;if(!a&&!o){console.warn("No tracking identifier or graphicType for measurement ",t);continue}let l=y.getAdapterForTrackingIdentifier(a),c=y.getAdaptersForTypes(i,o,s);if(l&&n.has(l.toolType)\|\|c&&c.some(e=>n.has(e.toolType)))return!0;console.log("Measurement is not rehydratable",a,r[e])}return console.log("No measurements found which were rehydratable"),!1}(e,d),e.isLoaded=!0,t.utils.sortDisplaySetsCopy(a.activeDisplaySets,{studyInstanceUIDFirst:e.StudyInstanceUID}).forEach(t=>{A(e,t,i,n)}),a.subscribe(a.EVENTS.DISPLAY_SETS_ADDED,t=>{let{displaySetsAdded:r}=t;r.forEach(t=>{A(e,t,i,n)})})}function A(e,t,n,r){let{customizationService:a}=r.services,o=e.measurements.filter(e=>!1===e.loaded);if(!o.length\|\|t.unsupported)return;let i=new Map;for(let e of n.getImageIdsForDisplaySet(t)){let{SOPInstanceUID:t,frameNumber:n}=b.getUIDsFromImageID(e),r=`${t}:${n\|\|1}`;i.set(r,e)}if(!o?.length)return;let s=e.SOPClassUID===E.Comprehensive3DSR;for(let n=o.length-1;n>=0;n--){let r=o[n],l=r.coords?.[0]?.ValueType==="SCOORD3D",c=a.getCustomization("onBeforeSRAddMeasurement");if("function"==typeof c&&(r=c({measurement:r,StudyInstanceUID:e.StudyInstanceUID,SeriesInstanceUID:e.SeriesInstanceUID})),s&&l&&function({measurement:e,displaySet:t}){return e.coords[0].ReferencedFrameOfReferenceSequence===t.FrameOfReferenceUID}({measurement:r,displaySet:t})){h({measurement:r,displaySet:t}),r.loaded=!0,r.displaySetInstanceUID=t.displaySetInstanceUID,o.splice(n,1);continue}let u=r.coords[0].ReferencedSOPSequence;if(!u)continue;let{ReferencedSOPInstanceUID:d}=u,p=u.ReferencedFrameNumber\|\|1,f=`${d}:${p}`,S=i.get(f);S&&function(e,t,n){let{coords:r}=e,a=e.coords[0].ReferencedSOPSequence&&e.coords[0].ReferencedSOPSequence?.ReferencedFrameNumber\|\|1;if(n&&Number(n)!==Number(a))return!1;for(let e=0;e<r.length;e++){let{ReferencedSOPInstanceUID:n}=r[e].ReferencedSOPSequence;if(n===t)return!0}return!1}(r,d,p)&&(h({measurement:r,imageId:S,frameNumber:p,displaySet:t}),r.loaded=!0,r.imageId=S,r.displaySetInstanceUID=t.displaySetInstanceUID,r.ReferencedSOPInstanceUID=d,r.frameNumber=p,o.splice(n,1))}}let q=e=>{let{ValueType:t,GraphicType:n,GraphicData:r}=e,a={ValueType:t,GraphicType:n,GraphicData:r};return a.ReferencedSOPSequence=e.ContentSequence?.ReferencedSOPSequence,a.ReferencedFrameOfReferenceSequence=e.ReferencedFrameOfReferenceUID\|\|e.ContentSequence?.ReferencedFrameOfReferenceSequence,a};function F(e,t){let{CodeMeaning:n}=e,{NumericValue:r,MeasurementUnitsCodeSequence:a}=t,{CodeValue:o}=a,i=r?Number(r).toFixed(2):"";return{label:n,value:`${i} ${o}`}}function k(e){return e?Array.isArray(e)?e:[e]:[]}let L={id:"@ohif/sr",name:"SR Key Images",protocolMatchingRules:[],toolGroupIds:["default"],numberOfPriorsReferenced:0,defaultViewport:{viewportOptions:{viewportType:"stack",toolGroupId:"default",allowUnmatchedView:!0},displaySets:[{id:"srDisplaySetId",matchedDisplaySetsIndex:-1}]},displaySetSelectors:{srDisplaySetId:{seriesMatchingRules:[{attribute:"Modality",constraint:{equals:"SR"}}]}},stages:[{name:"SR Key Images",viewportStructure:{layoutType:"grid",properties:{rows:1,columns:1}},viewports:[{viewportOptions:{allowUnmatchedView:!0},displaySets:[{id:"srDisplaySetId"}]}]}]},V=function(e,t){let n={},r=e.map(e=>e.uid).slice(),a=s.annotation.state.getAnnotationManager(),o=a.getFramesOfReference();for(let s=0;s<o.length;s++){let l=o[s],c=a.getAnnotations(l),u=Object.keys(c);for(let a=0;a<u.length;a++){let o=u[a],s=c[o];if(s)for(let a=0;a<s.length;a++){let l=s[a],c=r.findIndex(e=>e===l.annotationUID);if(-1!==c&&(!function(r,a){let o=r.metadata?.referencedImageId??i.NO_IMAGE_ID;n[o]\|\|(n[o]={});let s=n[o];s[a]\|\|(s[a]={data:[]});let l=e.find(e=>e.uid===r.annotationUID),c=s[a].data,{finding:u}=l,d=[];l.label&&(t.includes(a)?u={CodeValue:"CORNERSTONEFREETEXT",CodingSchemeDesignator:"CORNERSTONEJS",CodeMeaning:l.label}:d.push({CodeValue:"CORNERSTONEFREETEXT",CodingSchemeDesignator:"CORNERSTONEJS",CodeMeaning:l.label})),l.findingSites&&d.push(...l.findingSites);let p=Object.assign({},r,{finding:u,findingSites:d});c.push(p)}(l,o),r.splice(c,1),!r.length))return n}}}return n},{CodeScheme:_}=i.adaptersSR.Cornerstone3D,{locking:j}=s.annotation,{guid:$}=n().utils,{MeasurementReport:B}=i.adaptersSR.Cornerstone3D,{CORNERSTONE_3D_TOOLS_SOURCE_NAME:G,CORNERSTONE_3D_TOOLS_SOURCE_VERSION:H}=o.Enums,W=(e,t)=>{if(!t\|\|"CORNERSTONEJS"===t.CodingSchemeDesignator)return;let n=`${t.CodingSchemeDesignator}:${t.CodeValue}`;return{...e[n],ref:n,...t,text:t.CodeMeaning}};function z({servicesManager:e,extensionManager:n,commandsManager:r},a){var o,i,s,u;let d,p,f,S=n.getActiveDataSource()[0],{measurementService:m,displaySetService:g,customizationService:h}=e.services,y=h.getCustomization("codingValues"),I=h.getCustomization("panelMeasurement.disableEditing"),R=g.getDisplaySetByUID(a),{StudyInstanceUID:C,SeriesInstanceUID:O,instance:{SOPInstanceUID:D}}=R,E=m.getSourceMappings(G,H);if(!E\|\|!E.length)throw Error("Attempting to hydrate measurements service when no mappings present. This shouldn't be reached.");let T=t.DicomMetadataStore.getInstance(C,O,D),v={};R.measurements.forEach(e=>{let{ReferencedSOPInstanceUID:t,imageId:n,frameNumber:r=1}=e,a=`${t}:${r}`;n&&!v[a]&&(v[a]=n)});let b=B.generateToolState(T,v,l.metaData),w=h.getCustomization("onBeforeSRHydration")?.value;"function"==typeof w&&(b=w({storedMeasurementByAnnotationType:b,displaySet:R}));let N=E.map(e=>e.annotationType),U={};Object.keys(b).forEach(e=>{N.includes(e)&&(U[e]=b[e])});let M=[],P=(o=U,i=v,d=[],Object.keys(o).forEach(e=>{o[e].forEach(e=>{let t=e.annotation.data?.frameNumber\|\|1,n=i[`${e.sopInstanceUid}:${t}`];n&&!d.includes(n)&&d.push(n)})}),d);for(let e of P){let{SeriesInstanceUID:t,StudyInstanceUID:n}=l.metaData.get("instance",e);M.includes(t)\|\|M.push(t),f?f!==n&&console.warn("NO SUPPORT FOR SRs THAT HAVE MEASUREMENTS FROM MULTIPLE STUDIES."):f=n}let x=(s=U,u=v,p=[],Object.keys(s).forEach(e=>{s[e].forEach(e=>{let t=e.annotation.data?.frameNumber\|\|1;if(!u[`${e.sopInstanceUid}:${t}`]){let{FrameOfReferenceUID:t}=e.annotation.metadata;t&&!p.includes(t)&&p.push(t)}})}),p),A=new Map;for(let e of x){let t=function(e,t,n,r){let a=e.measurements?.find(e=>e.coords?.some(e=>"SCOORD3D"===e.ValueType&&e.ReferencedFrameOfReferenceSequence===n))?.displaySetInstanceUID,o=a?r.getDisplaySetByUID(a):void 0;return o?.FrameOfReferenceUID!==n\|\|o.isDerivedDisplaySet?Y(t,n):o}(R,g.getDisplaySetsBy(t=>t.FrameOfReferenceUID===e&&!t.isDerivedDisplaySet),e,g);t&&(A.set(e,t),M.includes(t.SeriesInstanceUID)\|\|M.push(t.SeriesInstanceUID),f?f!==t.StudyInstanceUID&&console.warn("NO SUPPORT FOR SRs THAT HAVE MEASUREMENTS FROM MULTIPLE STUDIES."):f=t.StudyInstanceUID)}return Object.keys(U).forEach(t=>{U[t].forEach(n=>{n.uid=$();let a=function(t){let n=t.annotation.data&&t.annotation.data.frameNumber\|\|1,r=v[`${t.sopInstanceUid}:${n}`];if(!r)return function(e,t,n=new Map){let{FrameOfReferenceUID:r}=e.annotation.metadata,{points:a}=e.annotation.data.handles,{displaySetService:o}=t.services,i=o.getDisplaySetsBy(e=>e.FrameOfReferenceUID===r);if(!i.length\|\|!a?.length)return{FrameOfReferenceUID:r};let s=n.get(r)\|\|Y(i,e.annotation),u={...{cameraFocalPoint:function(e){let t=1/e.length,n=c.vec3.create();for(let r of e)c.vec3.scaleAndAdd(n,n,r,t);return n}(function(e){if(1===e.length\|\|2===e.length)return e;let t=Math.ceil(e.length/4),n=Math.ceil(e.length/2);return[e[0],e[t],e[n]]}(a)),viewPlaneNormal:null,viewUp:null},volumeId:s.displaySetInstanceUID,FrameOfReferenceUID:r};return l.utilities.updatePlaneRestriction(a,u),u}(t,e,A);let{FrameOfReferenceUID:a}=l.metaData.get("instance",r);return{referencedImageId:r,FrameOfReferenceUID:a}}(n),{referencedImageId:o}=a,i={annotationUID:n.annotation.annotationUID,data:n.annotation.data,predecessorImageId:n.predecessorImageId,metadata:{...a,toolName:t}};l.utilities.updatePlaneRestriction(i.data.handles.points,i.metadata);let s=m.getSource(G,H);i.data.label=function(e){let{findingSites:t=[],finding:n,annotation:r}=e;if(r.data.label)return r.data.label;let a=t.find(e=>e.CodeValue===_.codeValues.CORNERSTONEFREETEXT);return a?a.CodeMeaning:n&&n.CodeValue===_.codeValues.CORNERSTONEFREETEXT?n.CodeMeaning:void 0}(n),i.data.finding=W(y,n.finding?.[0]),i.data.findingSites=((e,t)=>{if(!t\|\|!t.length)return;let n=[];for(let r=0;r<t.length;r++){let a=W(e,t[r][0]\|\|t[r]);a&&n.push(a)}return n.length&&n\|\|void 0})(y,n.findingSites),i.data.findingSites?.forEach(e=>{e.type&&(i.data[e.type]=e)});let u=E.find(e=>e.annotationType===t),d=m.addRawMeasurement(s,t,{annotation:i},u.toMeasurementSchema,S);r.runCommand("updateMeasurement",{uid:d,code:i.data.finding}),I&&j.setAnnotationLocked(d,!0),o&&!P.includes(o)&&P.push(o)})}),R.isHydrated=!0,{StudyInstanceUID:f,SeriesInstanceUIDs:M}}function Y(e,t){if(!e?.length)return void console.warn("No display set found for",t);let r=n().utils.sortDisplaySetsCopy(e);if(1===r.length)return r[0];let a=r.find(e=>e.isReconstructable);return a\|\|r[0]}let{MeasurementReport:X}=i.adaptersSR.Cornerstone3D,{log:J}=n();var K=f(963);class Q extends s.AnnotationTool{constructor(e={},t={configuration:{}}){super(e,t),this.isPointNearTool=()=>null,this.getHandleNearImagePoint=()=>null,this.renderAnnotation=(e,t)=>{let{viewport:n}=e,{element:r}=n,a=s.annotation.state.getAnnotations(this.getToolName(),r);if(!a?.length\|\|(a=this.filterInteractableAnnotationsForElement(r,a),!a?.length))return;let{activeIndex:o,trackingUniqueIdentifiers:i}=(0,K.eF)(r),l=i[o],c=a.filter(e=>i.includes(e.data?.TrackingUniqueIdentifier));if(!("function"==typeof n.getActors?n.getActors().length>0:!!n._actors?.size))return;let d={toolGroupId:this.toolGroupId,toolName:this.getToolName(),viewportId:e.viewport.id},{style:p}=s.annotation.config;for(let e=0;e<c.length;e++){let r=c[e],a=r.annotationUID,{renderableData:o,TrackingUniqueIdentifier:i}=r.data,{referencedImageId:f}=r.metadata;d.annotationUID=a;let S=p.getToolGroupToolStyles(this.toolGroupId)[this.getToolName()],m=this.getStyle("lineWidth",d,r),g=this.getStyle("lineDash",d,r),h={color:i===l?"rgb(0, 255, 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i=n[o];i[a]\|\|(i[a]={data:[]});let l=e.find(e=>e.uid===r.annotationUID),c=i[a].data,{finding:u}=l,d=[];l.label&&(t.includes(a)?u={CodeValue:"CORNERSTONEFREETEXT",CodingSchemeDesignator:"CORNERSTONEJS",CodeMeaning:l.label}:d.push({CodeValue:"CORNERSTONEFREETEXT",CodingSchemeDesignator:"CORNERSTONEJS",CodeMeaning:l.label})),l.findingSites&&d.push(...l.findingSites);let f=Object.assign({},r,{finding:u,findingSites:d});c.push(f)}(l,o),r.splice(c,1),!r.length))return n}}}return n},{CodeScheme:j}=s.adaptersSR.Cornerstone3D,{locking:$}=l.annotation,{guid:B}=r().utils,{MeasurementReport:G}=s.adaptersSR.Cornerstone3D,{CORNERSTONE_3D_TOOLS_SOURCE_NAME:H,CORNERSTONE_3D_TOOLS_SOURCE_VERSION:W}=i.Enums,Y=(e,t)=>{if(!t\|\|"CORNERSTONEJS"===t.CodingSchemeDesignator)return;let n=`${t.CodingSchemeDesignator}:${t.CodeValue}`;return{...e[n],ref:n,...t,text:t.CodeMeaning}};function z({servicesManager:e,extensionManager:t,commandsManager:r},a){var o,i,s,l;let d,f,p,S=t.getActiveDataSource()[0],{measurementService:m,displaySetService:h,customizationService:g}=e.services,I=g.getCustomization("codingValues"),y=g.getCustomization("panelMeasurement.disableEditing"),R=h.getDisplaySetByUID(a),{StudyInstanceUID:C,SeriesInstanceUID:D,instance:{SOPInstanceUID:T}}=R,O=m.getSourceMappings(H,W);if(!O\|\|!O.length)throw Error("Attempting to hydrate measurements service when no mappings present. This shouldn't be reached.");let E=n.DicomMetadataStore.getInstance(C,D,T),v={};R.measurements.forEach(e=>{let{ReferencedSOPInstanceUID:t,imageId:n,frameNumber:r=1}=e,a=`${t}:${r}`;n&&!v[a]&&(v[a]=n)});let b=G.generateToolState(E,v,c.metaData),N=g.getCustomization("onBeforeSRHydration")?.value;"function"==typeof N&&(b=N({storedMeasurementByAnnotationType:b,displaySet:R}));let U=O.map(e=>e.annotationType),w={};Object.keys(b).forEach(e=>{U.includes(e)&&(w[e]=b[e])});let x=[],M=(o=w,i=v,d=[],Object.keys(o).forEach(e=>{o[e].forEach(e=>{let t=e.annotation.data?.frameNumber\|\|1,n=i[`${e.sopInstanceUid}:${t}`];n&&!d.includes(n)&&d.push(n)})}),d);for(let e of M){let{SeriesInstanceUID:t,StudyInstanceUID:n}=c.metaData.get("instance",e);x.includes(t)\|\|x.push(t),p?p!==n&&console.warn("NO SUPPORT FOR SRs THAT HAVE MEASUREMENTS FROM MULTIPLE STUDIES."):p=n}let P=(s=w,l=v,f=[],Object.keys(s).forEach(e=>{s[e].forEach(e=>{let t=e.annotation.data?.frameNumber\|\|1;if(!l[`${e.sopInstanceUid}:${t}`]){let{FrameOfReferenceUID:t}=e.annotation.metadata;t&&!f.includes(t)&&f.push(t)}})}),f),A=new Map;for(let e of P){let t=function(e,t,n,r){let a=e.measurements?.find(e=>e.coords?.some(e=>"SCOORD3D"===e.ValueType&&e.ReferencedFrameOfReferenceSequence===n))?.displaySetInstanceUID,o=a?r.getDisplaySetByUID(a):void 0;return o?.FrameOfReferenceUID!==n\|\|o.isDerivedDisplaySet?X(t,n):o}(R,h.getDisplaySetsBy(t=>t.FrameOfReferenceUID===e&&!t.isDerivedDisplaySet),e,h);t&&(A.set(e,t),x.includes(t.SeriesInstanceUID)\|\|x.push(t.SeriesInstanceUID),p?p!==t.StudyInstanceUID&&console.warn("NO SUPPORT FOR SRs THAT HAVE MEASUREMENTS FROM MULTIPLE STUDIES."):p=t.StudyInstanceUID)}return Object.keys(w).forEach(t=>{w[t].forEach(n=>{n.uid=B();let a=function(t){let n=t.annotation.data&&t.annotation.data.frameNumber\|\|1,r=v[`${t.sopInstanceUid}:${n}`];if(!r)return function(e,t,n=new Map){let{FrameOfReferenceUID:r}=e.annotation.metadata,{points:a}=e.annotation.data.handles,{displaySetService:o}=t.services,i=o.getDisplaySetsBy(e=>e.FrameOfReferenceUID===r);if(!i.length\|\|!a?.length)return{FrameOfReferenceUID:r};let s=n.get(r)\|\|X(i,e.annotation),l={...{cameraFocalPoint:function(e){let t=1/e.length,n=u.vec3.create();for(let r of e)u.vec3.scaleAndAdd(n,n,r,t);return n}(function(e){if(1===e.length\|\|2===e.length)return e;let t=Math.ceil(e.length/4),n=Math.ceil(e.length/2);return[e[0],e[t],e[n]]}(a)),viewPlaneNormal:null,viewUp:null},volumeId:s.displaySetInstanceUID,FrameOfReferenceUID:r};return c.utilities.updatePlaneRestriction(a,l),l}(t,e,A);let{FrameOfReferenceUID:a}=c.metaData.get("instance",r);return{referencedImageId:r,FrameOfReferenceUID:a}}(n),{referencedImageId:o}=a,i={annotationUID:n.annotation.annotationUID,data:n.annotation.data,predecessorImageId:n.predecessorImageId,metadata:{...a,toolName:t}};c.utilities.updatePlaneRestriction(i.data.handles.points,i.metadata);let s=m.getSource(H,W);i.data.label=function(e){let{findingSites:t=[],finding:n,annotation:r}=e;if(r.data.label)return r.data.label;let a=t.find(e=>e.CodeValue===j.codeValues.CORNERSTONEFREETEXT);return a?a.CodeMeaning:n&&n.CodeValue===j.codeValues.CORNERSTONEFREETEXT?n.CodeMeaning:void 0}(n),i.data.finding=Y(I,n.finding?.[0]),i.data.findingSites=((e,t)=>{if(!t\|\|!t.length)return;let n=[];for(let r=0;r<t.length;r++){let a=Y(e,t[r][0]\|\|t[r]);a&&n.push(a)}return n.length&&n\|\|void 0})(I,n.findingSites),i.data.findingSites?.forEach(e=>{e.type&&(i.data[e.type]=e)});let l=O.find(e=>e.annotationType===t),d=m.addRawMeasurement(s,t,{annotation:i},l.toMeasurementSchema,S);r.runCommand("updateMeasurement",{uid:d,code:i.data.finding}),y&&$.setAnnotationLocked(d,!0),o&&!M.includes(o)&&M.push(o)})}),R.isHydrated=!0,{StudyInstanceUID:p,SeriesInstanceUIDs:x}}function X(e,t){if(!e?.length)return void console.warn("No display set found for",t);let n=r().utils.sortDisplaySetsCopy(e);if(1===n.length)return n[0];let a=n.find(e=>e.isReconstructable);return a\|\|n[0]}let{MeasurementReport:J}=s.adaptersSR.Cornerstone3D,{log:K}=r();var Q=p(963);class Z extends l.AnnotationTool{constructor(e={},t={configuration:{}}){super(e,t),this.isPointNearTool=()=>null,this.getHandleNearImagePoint=()=>null,this.renderAnnotation=(e,t)=>{let{viewport:n}=e,{element:r}=n,a=l.annotation.state.getAnnotations(this.getToolName(),r);if(!a?.length\|\|(a=this.filterInteractableAnnotationsForElement(r,a),!a?.length))return;let{activeIndex:o,trackingUniqueIdentifiers:i}=(0,Q.eF)(r),s=i[o],c=a.filter(e=>i.includes(e.data?.TrackingUniqueIdentifier));if(!("function"==typeof n.getActors?n.getActors().length>0:!!n._actors?.size))return;let u={toolGroupId:this.toolGroupId,toolName:this.getToolName(),viewportId:e.viewport.id},{style:f}=l.annotation.config;for(let e=0;e<c.length;e++){let r=c[e],a=r.annotationUID,{renderableData:o,TrackingUniqueIdentifier:i}=r.data,{referencedImageId:p}=r.metadata;u.annotationUID=a;let S=f.getToolGroupToolStyles(this.toolGroupId)[this.getToolName()],m=this.getStyle("lineWidth",u,r),h=this.getStyle("lineDash",u,r),g={color:i===s?"rgb(0, 255, 0)":this.getStyle("color",u,r),lineDash:h,lineWidth:m,...S};Object.keys(o).forEach(e=>{let i,s,c=o[e];switch(e){case d.sh.POINT:i=this.renderPoint;break;case d.sh.MULTIPOINT:i=this.renderMultipoint;break;case d.sh.POLYLINE:i=this.renderPolyLine;break;case d.sh.CIRCLE:i=this.renderEllipse;break;case d.sh.ELLIPSE:i=this.renderEllipse,s=l.utilities.math.ellipse.getCanvasEllipseCorners;break;default:throw Error(`Unsupported GraphicType: ${e}`)}let f=i(t,n,c,a,p,g);this.renderTextBox(t,n,f,s,r,u,g)})}}}_getTextBoxLinesFromLabels(e){let t=Math.min(e.length,5),n=[];for(let r=0;r<t;r++){let t=e[r];n.push(`${function(e){let t=ee[e];return void 0!==t?t:e}(t.label)}: ${t.value}`)}return n}renderPolyLine(e,t,n,r,a,o){let i={color:o.color,width:o.lineWidth,lineDash:o.lineDash},s=[];return n.map((n,a)=>{let o=n.map(e=>t.worldToCanvas(e)),c=`${a}`;2===o.length?l.drawing.drawLine(e,r,c,o[0],o[1],i):l.drawing.drawPolyline(e,r,c,o,i),s=s.concat(o)}),s}renderMultipoint(e,t,n,r,a,o){let i;n.map((n,a)=>{i=n.map(e=>t.worldToCanvas(e)),l.drawing.drawHandles(e,r,"0",i,{color:o.color})})}renderPoint(e,t,n,r,a,o){let i=[];return n.map((n,s)=>{let u=n[0];if(i.push(t.worldToCanvas(u)),void 0!==n[1])i.push(t.worldToCanvas(n[1]));else{let e=c.metaData.get("imagePixelModule",a),n=10,r=10;if(e){let{columns:t,rows:a}=e;n=t/10,r=a/10}let o=c.utilities.worldToImageCoords(a,u),s=c.utilities.imageToWorldCoords(a,[o[0]+n,o[1]+r]);i.push(t.worldToCanvas(s))}let d=`${s}`;l.drawing.drawArrow(e,r,d,i[1],i[0],{color:o.color,width:o.lineWidth})}),i}renderEllipse(e,t,n,r,a,o){let i;return n.map((n,a)=>{let s;if(0===n.length)return;let c=t.getRotation();i=n.map(e=>t.worldToCanvas(e)),s=90==c\|\|270==c?l.utilities.math.ellipse.getCanvasEllipseCorners([i[2],i[3],i[0],i[1]]):l.utilities.math.ellipse.getCanvasEllipseCorners(i);let u=`${a}`;l.drawing.drawEllipse(e,r,u,s[0],s[1],{color:o.color,width:o.lineWidth,lineDash:o.lineDash})}),i}renderTextBox(e,t,n,r,a,o,i={}){if(!n\|\|!a)return;let{annotationUID:s,data:c={}}=a,{labels:u}=c,{color:d}=i,f=n;"function"==typeof r&&(f=r(n));let p=this._getTextBoxLinesFromLabels(u),S=l.utilities.drawing.getTextBoxCoordsCanvas(f);a.data?.handles?.textBox?.worldPosition\|\|(a.data.handles.textBox.worldPosition=t.canvasToWorld(S));let m=t.worldToCanvas(a.data.handles.textBox.worldPosition),h=this.getLinkedTextBoxStyle(o,a),{x:g,y:I,width:y,height:R}=l.drawing.drawLinkedTextBox(e,s,"1",p,m,n,{},{...h,color:d});a.data.handles.textBox.worldBoundingBox={topLeft:t.canvasToWorld([g,I]),topRight:t.canvasToWorld([g+y,I]),bottomLeft:t.canvasToWorld([g,I+R]),bottomRight:t.canvasToWorld([g+y,I+R])}}}Z.toolName=h.DICOMSRDisplay;let ee={"Short Axis":"W: ","Long Axis":"L: ",AREA:"Area: ",Length:"",CORNERSTONEFREETEXT:""};function et(e,t,n={}){class r extends t{constructor(e,t){e.configuration=e.configuration?{...e.configuration,...n}:n,super(e,t)}}r.toolName=e,(0,l.addTool)(r)}var en=p(154),er=p(870);let ea=t.lazy(()=>Promise.resolve().then(p.bind(p,954))),eo=n=>{let r,a,o=(0,e.c)(3);return o[0]===Symbol.for("react.memo_cache_sentinel")?(r=(0,er.jsx)("div",{children:"Loading..."}),o[0]=r):r=o[0],o[1]!==n?(a=(0,er.jsx)(t.Suspense,{fallback:r,children:(0,er.jsx)(ea,{...n})}),o[1]=n,o[2]=a):a=o[2],a},ei={id:R,onModeEnter:function({servicesManager:e}){let{displaySetService:t}=e.services;[...t.getDisplaySetCache().values()].filter(e=>e.SOPClassHandlerId===D\|\|e.SOPClassHandlerId===O).forEach(e=>{e.isHydrated=!1})},preRegistration:function({configuration:e={},servicesManager:t}){et(h.DICOMSRDisplay,Z),et(h.SRLength,l.LengthTool),et(h.SRBidirectional,l.BidirectionalTool),et(h.SREllipticalROI,l.EllipticalROITool),et(h.SRCircleROI,l.CircleROITool),et(h.SRArrowAnnotate,l.ArrowAnnotateTool),et(h.SRAngle,l.AngleTool),et(h.SRPlanarFreehandROI,l.PlanarFreehandROITool),et(h.SRRectangleROI,l.RectangleROITool),et(h.SRCobbAngle,l.CobbAngleTool);let n={lineDash:"4,4"};l.annotation.config.style.setToolGroupToolStyles("SRToolGroup",{[h.DICOMSRDisplay]:n,SRLength:n,SRBidirectional:n,SREllipticalROI:n,SRCircleROI:n,SRArrowAnnotate:n,SRCobbAngle:n,SRAngle:n,SRPlanarFreehandROI:n,SRRectangleROI:n,global:{}})},getViewportModule:({servicesManager:t,extensionManager:n})=>[{name:"dicom-sr",component:r=>{let a,o=(0,e.c)(2);return o[0]!==r?(a=(0,er.jsx)(eo,{servicesManager:t,extensionManager:n,...r}),o[0]=r,o[1]=a):a=o[1],a}}],getCommandsModule:e=>{let{servicesManager:t,extensionManager:r,commandsManager:a}=e,{customizationService:o}=t.services,i={changeColorMeasurement:({uid:e})=>{throw Error("Unsupported operation: changeColorMeasurement")},storeMeasurements:async({measurementData:e,dataSource:t,additionalFindingTypes:r,options:i={}})=>{K.info("[DICOMSR] storeMeasurements");let s=a.runCommand("createStoreFunction",{dataSource:t,defaultFileName:"dicom-sr.dcm"});if(!s)return K.error("[DICOMSR] No valid store for dataSource:",t),Promise.reject({});try{let t,{date:a,time:l}=n.utils.getCurrentDicomDateTime(),u=((e,t,n={})=>{let r=k(e,t),{dataset:a}=J.generateReport(r,c.metaData,n);return void 0===a.SpecificCharacterSet&&(a.SpecificCharacterSet="ISO_IR 192"),a})(e,r,{...i.predecessorImageId?{}:{SeriesDate:a,SeriesTime:l},...i});n.utils.updateNewInstanceMetadata(u);let{ContentSequence:d}=u;if(!d?.[4]?.ContentSequence?.length)throw console.log("naturalizedReport missing imaging content",u),Error("Invalid report, no content");if(!u.SOPClassUID)throw Error("No sop class uid");let f=o.getCustomization("onBeforeDicomStore");return"function"==typeof f&&(t=f({dicomDict:t,measurementData:e,naturalizedReport:u})),await s(u,{measurementData:e,dicomDict:t}),u}catch(e){throw console.warn(e),K.error(`[DICOMSR] Error while saving the measurements: ${e.message}`),Error(e.message\|\|"Error while saving the measurements.")}},hydrateStructuredReport:({displaySetInstanceUID:e})=>z({servicesManager:t,extensionManager:r,commandsManager:a},e)},s={storeMeasurements:i.storeMeasurements,hydrateStructuredReport:i.hydrateStructuredReport};return{actions:i,definitions:s,defaultContext:"CORNERSTONE_STRUCTURED_REPORT"}},getSopClassHandlerModule:function(e){let{servicesManager:t,extensionManager:r}=e,a=e=>(function(e,t,r){var a;if(!e\|\|!e.length)throw Error("No instances were provided");n.utils.sortStudyInstances(e);let i=e[e.length-1],{StudyInstanceUID:s,SeriesInstanceUID:l,SOPInstanceUID:c,SeriesDescription:u,SeriesNumber:f,ConceptNameCodeSequence:p,SOPClassUID:S,imageId:m}=i;a=i.StudyInstanceUID,e.forEach(e=>{if(e.StudyInstanceUID!==a)throw console.warn("Not all instances have the same UID",a,e),Error(`Instances ${e.SOPInstanceUID} does not belong to ${a}`)});let{SeriesDate:h,SeriesTime:g}=n.utils.getLatestInstanceDateTime(i),I=S===E.Comprehensive3DSR,y=p?.CodeValue===d.n7.ImagingMeasurementReport,R=!!i.ContentSequence,C=new n.DisplaySetMessageList;R\|\|C.addMessage(n.DisplaySetMessage.CODES.MISSING_REPORT_CONTENT);let T={Modality:"SR",displaySetInstanceUID:n.utils.guid(),SeriesDescription:u,SeriesNumber:f,SeriesDate:h,SeriesTime:g,SOPInstanceUID:c,SeriesInstanceUID:l,StudyInstanceUID:s,SOPClassHandlerId:I?O:D,SOPClassUID:S,instances:e,referencedImages:null,measurements:null,isDerivedDisplaySet:!0,isLoaded:!1,isImagingMeasurementReport:y&&R,messages:C,sopClassUids:M,instance:i,predecessorImageId:m,addInstances:P,label:u\|\|`${o().t("Series")} ${f} - ${o().t("SR")}`};return T.load=()=>A(T,t,r),[T]})(e,t,r);return[{name:C,sopClassUids:M,getDisplaySetsFromSeries:a},{name:T,sopClassUids:[E.Comprehensive3DSR],getDisplaySetsFromSeries:a}]},getUtilityModule:({servicesManager:e})=>[{name:"tools",exports:{toolNames:h}}]}})(),S=p.O(S)})());

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone-dicom-sr",
-  "version": "3.14.0-beta.3",
+  "version": "3.14.0-beta.37",
   "description": "OHIF extension for an SR Cornerstone Viewport",
   "author": "OHIF",
   "license": "MIT",
@@ -24,17 +24,15 @@
     "dcmjs": "0.52.0",
     "dicom-parser": "1.8.21",
     "hammerjs": "2.0.8",
-    "prop-types": "15.8.1",
-    "react": "18.3.1",
-    "@ohif/extension-cornerstone": "3.14.0-beta.3",
-    "@ohif/ui": "3.14.0-beta.3",
-    "@ohif/core": "3.14.0-beta.3"
+    "react": "19.2.7",
+    "@ohif/core": "3.14.0-beta.37",
+    "@ohif/extension-cornerstone": "3.14.0-beta.37"
   },
   "dependencies": {
     "@babel/runtime": "7.29.7",
-    "@cornerstonejs/adapters": "5.6.8",
-    "@cornerstonejs/core": "5.6.8",
-    "@cornerstonejs/tools": "5.6.8",
+    "@cornerstonejs/adapters": "5.10.3",
+    "@cornerstonejs/core": "5.10.3",
+    "@cornerstonejs/tools": "5.10.3",
     "classnames": "2.5.1"
   },
   "devDependencies": {