@ohif/extension-cornerstone-dicom-sr 3.11.0-beta.9 → 3.11.0-beta.91

package/dist/ohif-extension-cornerstone-dicom-sr.umd.js

@@ -1,2 +1,2 @@
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Error(`Instances ${t.SOPInstanceUID} does not belong to ${e}`)}))})(o.StudyInstanceUID,e);const g=m===b.Comprehensive3DSR,h=p?.CodeValue===c.n7.ImagingMeasurementReport,y={Modality:"SR",displaySetInstanceUID:t.utils.guid(),SeriesDescription:l,SeriesNumber:u,SeriesDate:d,SeriesTime:f,SOPInstanceUID:s,SeriesInstanceUID:i,StudyInstanceUID:a,SOPClassHandlerId:g?v:I,SOPClassUID:m,instances:e,referencedImages:null,measurements:null,isDerivedDisplaySet:!0,isLoaded:!1,isImagingMeasurementReport:h,sopClassUids:w,instance:o,addInstances:N};return y.load=()=>async function(e,t,n){const{displaySetService:r,measurementService:o}=t.services,a=n.getDataSources(),i=a[0],{ContentSequence:s}=e.instance;async function l(t,n=null,r=null){for(const o in t)if("object"==typeof t[o]&&null!==t[o])await l(t[o],t,o);else if(Array.isArray(t[o]))await Promise.all(t[o].map((e=>l(e,t,o))));else if("BulkDataURI"===o){const a=await i.retrieve.bulkDataURI({BulkDataURI:t[o],StudyInstanceUID:e.instance.StudyInstanceUID,SeriesInstanceUID:e.instance.SeriesInstanceUID,SOPInstanceUID:e.instance.SOPInstanceUID});n&&r&&(n[r]=new Float32Array(a))}}!0!==e.isLoaded&&await l(s);e.isImagingMeasurementReport?(e.referencedImages=function(e){const t=e.find((e=>e.ConceptNameCodeSequence.CodeValue===c.n7.ImageLibrary));if(!t)return[];const n=A(t.ContentSequence).find((e=>e.ConceptNameCodeSequence.CodeValue===c.n7.ImageLibraryGroup));if(!n)return[];const r=[];return A(n.ContentSequence).forEach((e=>{const{ReferencedSOPSequence:t}=e;if(t)for(const e of A(t))if(e.ReferencedSOPClassUID){const{ReferencedSOPClassUID:t,ReferencedSOPInstanceUID:n}=e;r.push({ReferencedSOPClassUID:t,ReferencedSOPInstanceUID:n})}})),r}(s),e.measurements=function(e){const t=e.find((e=>e.ConceptNameCodeSequence.CodeValue===c.n7.ImagingMeasurements));if(!t)return[];const n=function(e){const t={};return e.forEach((e=>{const n=A(e.ContentSequence),r=n.find((e=>e.ConceptNameCodeSequence.CodeValue===c.n7.TrackingUniqueIdentifier));r||console.warn("No Tracking Unique Identifier, skipping ambiguous measurement.");const o=r.UID;void 0===t[o]?t[o]=[...n]:n.forEach((e=>{e.ConceptNameCodeSequence.CodeValue!==c.n7.TrackingUniqueIdentifier&&t[o].push(e)}))})),t}(A(t.ContentSequence).filter((e=>e.ConceptNameCodeSequence.CodeValue===c.n7.MeasurementGroup))),r=[];return Object.keys(n).forEach((e=>{const t=function(e){if(e.some((e=>"SCOORD"===e.ValueType||"SCOORD3D"===e.ValueType)))return function(e){const t=e.find((e=>"SCOORD"===e.ValueType||"SCOORD3D"===e.ValueType)),n=e.find((e=>"UIDREF"===e.ValueType)),r=e.find((e=>e.ConceptNameCodeSequence.CodeValue===c.n7.TrackingIdentifier));if(!t)return void console.warn(`graphic ValueType ${t.ValueType} not currently supported, skipping annotation.`);const o=e.filter((e=>"NUM"===e.ValueType)),a={loaded:!1,labels:[],coords:[P(t)],TrackingUniqueIdentifier:n.UID,TrackingIdentifier:r.TextValue};o.forEach((e=>{const{ConceptNameCodeSequence:t,MeasuredValueSequence:n}=e;n&&a.labels.push(k(t,n))}));const i=e.filter((e=>e.ConceptNameCodeSequence.CodingSchemeDesignator===c.bY.SCT&&e.ConceptNameCodeSequence.CodeValue===c.n7.FindingSiteSCT));i.length&&a.labels.push({label:c.n7.FindingSiteSCT,value:i[0].ConceptCodeSequence.CodeMeaning});return a}(e);return function(e){const t=e.filter((e=>"NUM"===e.ValueType)),n=e.find((e=>"UIDREF"===e.ValueType)),r=e.find((e=>e.ConceptNameCodeSequence.CodeValue===c.n7.TrackingIdentifier)),o=e.find((e=>e.ConceptNameCodeSequence.CodeValue===c.n7.Finding)),a=e.filter((e=>e.ConceptNameCodeSequence.CodingSchemeDesignator===c.bY.SRT&&e.ConceptNameCodeSequence.CodeValue===c.n7.FindingSite)),i={loaded:!1,labels:[],coords:[],TrackingUniqueIdentifier:n.UID,TrackingIdentifier:r.TextValue};o&&c.bY.CornerstoneCodeSchemes.includes(o.ConceptCodeSequence.CodingSchemeDesignator)&&o.ConceptCodeSequence.CodeValue===D.codeValues.CORNERSTONEFREETEXT&&i.labels.push({label:D.codeValues.CORNERSTONEFREETEXT,value:o.ConceptCodeSequence.CodeMeaning});if(a.length){const e=a.find((e=>c.bY.CornerstoneCodeSchemes.includes(e.ConceptCodeSequence.CodingSchemeDesignator)&&e.ConceptCodeSequence.CodeValue===D.codeValues.CORNERSTONEFREETEXT));e&&i.labels.push({label:D.codeValues.CORNERSTONEFREETEXT,value:e.ConceptCodeSequence.CodeMeaning})}return t.forEach((e=>{const{ConceptNameCodeSequence:t,ContentSequence:n,MeasuredValueSequence:r}=e,{ValueType:o}=n;if("SCOORD"===!o)return void console.warn(`Graphic ${o} not currently supported, skipping annotation.`);const a=P(n);a&&i.coords.push(a),r&&i.labels.push(k(t,r))})),i}(e)}(n[e]);t&&r.push(t)})),r}(s)):(e.referencedImages=[],e.measurements=[]);const u=o.getSourceMappings(R,O);e.isHydrated=!1,e.isRehydratable=function(e,t){if(!t||!t.length)return!1;const n=new Set;for(const e of t)n.add(e.annotationType);const{measurements:r}=e;for(let e=0;e<r.length;e++){const{TrackingIdentifier:t}=r[e]||{};if(!t){console.warn("No tracking identifier for measurement ",r[e]);continue}const o=S.getAdapterForTrackingIdentifier(t);if(o&&n.has(o.toolType))return!0;console.log("Measurement is not rehydratable",t,r[e])}return console.log("No measurements found which were rehydratable"),!1}(e,u),e.isLoaded=!0,r.activeDisplaySets.forEach((n=>{M(e,n,i,t)})),r.subscribe(r.EVENTS.DISPLAY_SETS_ADDED,(n=>{const{displaySetsAdded:r}=n;r.forEach((n=>{M(e,n,i,t)}))}))}(y,n,r),[y]}function M(e,t,n,r){const{customizationService:o}=r.services,a=e.measurements.filter((e=>!1===e.loaded));if(0===a.length||!(t instanceof E)||t.unsupported)return;const i=new Map,s=n.getImageIdsForDisplaySet(t);for(const e of s){const{SOPInstanceUID:t,frameNumber:n}=T.getUIDsFromImageID(e),r=`${t}:${n||1}`;i.set(r,e)}if(!a?.length)return;const c=e.SOPClassUID===b.Comprehensive3DSR;for(let n=a.length-1;n>=0;n--){let r=a[n];const s=o.getCustomization("onBeforeSRAddMeasurement");if("function"==typeof s&&(r=s({measurement:r,StudyInstanceUID:e.StudyInstanceUID,SeriesInstanceUID:e.SeriesInstanceUID})),c){g(r,null,null),r.loaded=!0;continue}const l=r.coords[0].ReferencedSOPSequence;if(!l)continue;const{ReferencedSOPInstanceUID:u}=l,d=l.ReferencedFrameNumber||1,f=`${u}:${d}`,p=i.get(f);p&&U(r,u,d)&&(g(r,p,d),r.loaded=!0,r.imageId=p,r.displaySetInstanceUID=t.displaySetInstanceUID,r.ReferencedSOPInstanceUID=u,r.frameNumber=d,a.splice(n,1))}}function U(e,t,n){const{coords:r}=e,o=e.coords[0].ReferencedSOPSequence&&e.coords[0].ReferencedSOPSequence?.ReferencedFrameNumber||1;if(n&&Number(n)!==Number(o))return!1;for(let e=0;e<r.length;e++){const n=r[e],{ReferencedSOPInstanceUID:o}=n.ReferencedSOPSequence;if(o===t)return!0}return!1}const P=e=>{const{ValueType:t,GraphicType:n,GraphicData:r}=e,o={ValueType:t,GraphicType:n,GraphicData:r};return o.ReferencedSOPSequence=e.ContentSequence?.ReferencedSOPSequence,o.ReferencedFrameOfReferenceSequence=e.ReferencedFrameOfReferenceUID||e.ContentSequence?.ReferencedFrameOfReferenceSequence,o};function k(e,t){const{CodeMeaning:n}=e,{NumericValue:r,MeasurementUnitsCodeSequence:o}=t,{CodeValue:a}=o;return{label:n,value:`${r?Number(r).toFixed(2):""} ${a}`}}function A(e){return e?Array.isArray(e)?e:[e]:[]}const L=function({servicesManager:e,extensionManager:t}){const n=n=>x(n,e,t);return[{name:y,sopClassUids:w,getDisplaySetsFromSeries:n},{name:C,sopClassUids:[b.Comprehensive3DSR],getDisplaySetsFromSeries:n}]},q={id:"@ohif/sr",name:"SR Key Images",protocolMatchingRules:[],toolGroupIds:["default"],numberOfPriorsReferenced:0,defaultViewport:{viewportOptions:{viewportType:"stack",toolGroupId:"default",allowUnmatchedView:!0},displaySets:[{id:"srDisplaySetId",matchedDisplaySetsIndex:-1}]},displaySetSelectors:{srDisplaySetId:{seriesMatchingRules:[{attribute:"Modality",constraint:{equals:"SR"}}]}},stages:[{name:"SR Key Images",viewportStructure:{layoutType:"grid",properties:{rows:1,columns:1}},viewports:[{viewportOptions:{allowUnmatchedView:!0},displaySets:[{id:"srDisplaySetId"}]}]}]};var j=p(55),_=p(545),V=p.n(_);var F=p(111),B=p.n(F);const{log:$}=n();const G=function(e,t){const n={};function r(r,o){if(!r.metadata?.referencedImageId)return void $.warn(`[DICOMSR] No referencedImageId found for ${o} ${r.id}`);const a=r.metadata.referencedImageId;n[a]||(n[a]={});const i=n[a];i[o]||(i[o]={data:[]});const s=e.find((e=>e.uid===r.annotationUID)),c=i[o].data;let{finding:l}=s;const u=[];s.label&&(t.includes(o)?l={CodeValue:"CORNERSTONEFREETEXT",CodingSchemeDesignator:"CORNERSTONEJS",CodeMeaning:s.label}:u.push({CodeValue:"CORNERSTONEFREETEXT",CodingSchemeDesignator:"CORNERSTONEJS",CodeMeaning:s.label})),s.findingSites&&u.push(...s.findingSites);const d=Object.assign({},r,{finding:l,findingSites:u});c.push(d)}const o=e.map((e=>e.uid)).slice(),i=a.annotation.state.getAnnotationManager(),s=i.getFramesOfReference();for(let e=0;e<s.length;e++){const t=s[e],a=i.getAnnotations(t),c=Object.keys(a);for(let e=0;e<c.length;e++){const t=c[e],i=a[t];if(i)for(let e=0;e<i.length;e++){const a=i[e],s=o.findIndex((e=>e===a.annotationUID));if(-1!==s&&(r(a,t),o.splice(s,1),!o.length))return n}}}return n},{CodeScheme:W}=o.adaptersSR.Cornerstone3D;const{locking:z}=a.annotation,{guid:H}=n().utils,{MeasurementReport:Y,CORNERSTONE_3D_TAG:X}=o.adaptersSR.Cornerstone3D,{CORNERSTONE_3D_TOOLS_SOURCE_NAME:J,CORNERSTONE_3D_TOOLS_SOURCE_VERSION:K}=r.Enums,Q=(e,t)=>{if(!t||"CORNERSTONEJS"===t.CodingSchemeDesignator)return;const n=`${t.CodingSchemeDesignator}:${t.CodeValue}`;return{...e[n],ref:n,...t,text:t.CodeMeaning}},Z=(e,t)=>{if(!t||!t.length)return;const n=[];for(let r=0;r<t.length;r++){const o=Q(e,t[r][0]||t[r]);o&&n.push(o)}return n.length&&n||void 0};function ee({servicesManager:e,extensionManager:n,commandsManager:r},o){const a=n.getActiveDataSource()[0],{measurementService:s,displaySetService:c,customizationService:l}=e.services,u=l.getCustomization("codingValues"),d=l.getCustomization("panelMeasurement.disableEditing"),f=c.getDisplaySetByUID(o),p=s.getSourceMappings(J,K);if(!p||!p.length)throw new Error("Attempting to hydrate measurements service when no mappings present. This shouldn't be reached.");const m=t.DicomMetadataStore.getInstance(f.StudyInstanceUID,f.SeriesInstanceUID,f.SOPInstanceUID),g={},S={};f.measurements.forEach((e=>{const{ReferencedSOPInstanceUID:t,imageId:n,frameNumber:r}=e;g[t]||(g[t]=n,S[t]=[]),S[t][r]||(S[t][r]=n)}));const h=m;let y=Y.generateToolState(h,g,i.utilities.imageToWorldCoords,i.metaData);const I=l.getCustomization("onBeforeSRHydration")?.value;"function"==typeof I&&(y=I({storedMeasurementByAnnotationType:y,displaySet:f}));const C=p.map((e=>e.annotationType)),v={};Object.keys(y).forEach((e=>{C.includes(e)&&(v[e]=y[e])}));const b=[];let R;Object.keys(v).forEach((e=>{v[e].forEach((e=>{const t=e.annotation.data&&e.annotation.data.frameNumber||1,n=S[e.sopInstanceUid][t]||g[e.sopInstanceUid];b.includes(n)||b.push(n)}))}));const O=[];for(let e=0;e<b.length;e++){const t=b[e],{SeriesInstanceUID:n,StudyInstanceUID:r}=i.metaData.get("instance",t);O.includes(n)||O.push(n),R?R!==r&&console.warn("NO SUPPORT FOR SRs THAT HAVE MEASUREMENTS FROM MULTIPLE STUDIES."):R=r}return Object.keys(v).forEach((e=>{v[e].forEach((t=>{const n=t.annotation.data&&t.annotation.data.frameNumber||1,o=S[t.sopInstanceUid][n]||g[t.sopInstanceUid];t.uid=H();const c=i.metaData.get("instance",o),{FrameOfReferenceUID:l}=c,f={annotationUID:t.annotation.annotationUID,data:t.annotation.data,metadata:{toolName:e,referencedImageId:o,FrameOfReferenceUID:l}},m=s.getSource(J,K);f.data.label=function(e){const{findingSites:t=[],finding:n}=e;let r=t.find((e=>e.CodeValue===W.codeValues.CORNERSTONEFREETEXT));return r?r.CodeMeaning:n&&n.CodeValue===W.codeValues.CORNERSTONEFREETEXT?n.CodeMeaning:void 0}(t),f.data.finding=Q(u,t.finding?.[0]),f.data.findingSites=Z(u,t.findingSites),f.data.findingSites?.forEach((e=>{e.type&&(f.data[e.type]=e)}));const h=p.find((t=>t.annotationType===e)),y=s.addRawMeasurement(m,e,{annotation:f},h.toMeasurementSchema,a);r.runCommand("updateMeasurement",{uid:y,code:f.data.finding}),d&&z.setAnnotationLocked(y,!0),b.includes(o)||b.push(o)}))})),f.isHydrated=!0,{StudyInstanceUID:R,SeriesInstanceUIDs:O}}const{MeasurementReport:te}=o.adaptersSR.Cornerstone3D,{log:ne}=n(),re=(e,t,n={})=>{const r=G(e,t),o=te.generateReport(r,i.metaData,i.utilities.worldToImageCoords,n),{dataset:a}=o;return void 0===a.SpecificCharacterSet&&(a.SpecificCharacterSet="ISO_IR 192"),a.InstanceNumber=n.InstanceNumber??1,a},oe=e=>{const{servicesManager:n,extensionManager:r,commandsManager:o}=e,{customizationService:a,viewportGridService:i,displaySetService:s}=n.services,c={changeColorMeasurement:({uid:e})=>{throw new Error("Unsupported operation: changeColorMeasurement")},downloadReport:({measurementData:e,additionalFindingTypes:t,options:n={}})=>{const r=re(e,t,n),o=B().data.datasetToBlob(r),a=URL.createObjectURL(o);window.location.assign(a)},storeMeasurements:async({measurementData:e,dataSource:n,additionalFindingTypes:r,options:o={}})=>{if(ne.info("[DICOMSR] storeMeasurements"),!n||!n.store||!n.store.dicom)return ne.error("[DICOMSR] datasource has no dataSource.store.dicom endpoint!"),Promise.reject({});try{const i=re(e,r,o),{StudyInstanceUID:s,ContentSequence:c}=i;if(!c?.[4].ContentSequence?.length)throw console.log("naturalizedReport missing imaging content",i),new Error("Invalid report, no content");const l=a.getCustomization("onBeforeDicomStore");let u;return"function"==typeof l&&(u=l({dicomDict:u,measurementData:e,naturalizedReport:i})),await n.store.dicom(i,null,u),s&&n.deleteStudyMetadataPromise(s),t.DicomMetadataStore.addInstances([i],!0),i}catch(e){throw console.warn(e),ne.error(`[DICOMSR] Error while saving the measurements: ${e.message}`),new Error(e.message||"Error while saving the measurements.")}},loadSRMeasurements:({displaySetInstanceUID:e})=>{const{SeriesInstanceUIDs:t}=ee({servicesManager:n,extensionManager:r,commandsManager:o},e),a=s.getDisplaySetsForSeries(t[0]);a.length&&o.run("setDisplaySetsForViewports",{viewportsToUpdate:[{viewportId:i.getActiveViewportId(),displaySetInstanceUIDs:[a[0].displaySetInstanceUID]}]})}};return{actions:c,definitions:{downloadReport:{commandFn:c.downloadReport},storeMeasurements:{commandFn:c.storeMeasurements},loadSRMeasurements:{commandFn:c.loadSRMeasurements}},defaultContext:"CORNERSTONE_STRUCTURED_REPORT"}};var ae=p(942);class ie extends a.AnnotationTool{constructor(e={},t={configuration:{}}){super(e,t),this.isPointNearTool=()=>null,this.getHandleNearImagePoint=()=>null,this.renderAnnotation=(e,t)=>{const{viewport:n}=e,{element:r}=n;let o=a.annotation.state.getAnnotations(this.getToolName(),r);if(!o?.length)return;if(o=this.filterInteractableAnnotationsForElement(r,o),!o?.length)return;const i=(0,ae.eF)(r),{activeIndex:s,trackingUniqueIdentifiers:l}=i,u=l[s],d=o.filter((e=>l.includes(e.data?.TrackingUniqueIdentifier)));if(!n._actors?.size)return;const f={toolGroupId:this.toolGroupId,toolName:this.getToolName(),viewportId:e.viewport.id},{style:p}=a.annotation.config;for(let e=0;e<d.length;e++){const r=d[e],o=r.annotationUID,{renderableData:i,TrackingUniqueIdentifier:s}=r.data,{referencedImageId:l}=r.metadata;f.annotationUID=o;const m=p.getToolGroupToolStyles(this.toolGroupId)[this.getToolName()],g=this.getStyle("lineWidth",f,r),S=this.getStyle("lineDash",f,r),h={color:s===u?"rgb(0, 255, 0)":this.getStyle("color",f,r),lineDash:S,lineWidth:g,...m};Object.keys(i).forEach((e=>{const s=i[e];let u,d;switch(e){case c.sh.POINT:u=this.renderPoint;break;case c.sh.MULTIPOINT:u=this.renderMultipoint;break;case c.sh.POLYLINE:u=this.renderPolyLine;break;case c.sh.CIRCLE:u=this.renderEllipse;break;case c.sh.ELLIPSE:u=this.renderEllipse,d=a.utilities.math.ellipse.getCanvasEllipseCorners;break;default:throw new Error(`Unsupported GraphicType: ${e}`)}const p=u(t,n,s,o,l,h);this.renderTextBox(t,n,p,d,r,f,h)}))}}}_getTextBoxLinesFromLabels(e){const t=Math.min(e.length,5),n=[];for(let r=0;r<t;r++){const t=e[r];n.push(`${ce(t.label)}: ${t.value}`)}return n}renderPolyLine(e,t,n,r,o,i){const s={color:i.color,width:i.lineWidth,lineDash:i.lineDash};let c=[];return n.map(((n,o)=>{const i=n.map((e=>t.worldToCanvas(e))),l=`${o}`;2===i.length?a.drawing.drawLine(e,r,l,i[0],i[1],s):a.drawing.drawPolyline(e,r,l,i,s),c=c.concat(i)})),c}renderMultipoint(e,t,n,r,o,i){let s;n.map(((n,o)=>{s=n.map((e=>t.worldToCanvas(e)));a.drawing.drawHandles(e,r,"0",s,{color:i.color})}))}renderPoint(e,t,n,r,o,s){const c=[];return n.map(((n,l)=>{const u=n[0];if(c.push(t.worldToCanvas(u)),void 0!==n[1])c.push(t.worldToCanvas(n[1]));else{const e=i.metaData.get("imagePixelModule",o);let 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p=this._getTextBoxLinesFromLabels(u),m=a.utilities.drawing.getTextBoxCoordsCanvas(f);o.data?.handles?.textBox?.worldPosition||(o.data.handles.textBox.worldPosition=t.canvasToWorld(m));const g=t.worldToCanvas(o.data.handles.textBox.worldPosition),S=this.getLinkedTextBoxStyle(i,o),h=a.drawing.drawLinkedTextBox(e,c,"1",p,g,n,{},{...S,color:d}),{x:y,y:I,width:C,height:v}=h;o.data.handles.textBox.worldBoundingBox={topLeft:t.canvasToWorld([y,I]),topRight:t.canvasToWorld([y+C,I]),bottomLeft:t.canvasToWorld([y,I+v]),bottomRight:t.canvasToWorld([y+C,I+v])}}}ie.toolName=f.DICOMSRDisplay;const se={"Short Axis":"W: ","Long Axis":"L: ",AREA:"Area: ",Length:"",CORNERSTONEFREETEXT:""};function ce(e){const t=se[e];return void 0!==t?t:e}class le extends 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l=r.coords[0].ReferencedSOPSequence;if(!l)continue;const{ReferencedSOPInstanceUID:u}=l,d=l.ReferencedFrameNumber||1,f=`${u}:${d}`,p=s.get(f);p&&q(r,u,d)&&(h(r,p,d),r.loaded=!0,r.imageId=p,r.displaySetInstanceUID=t.displaySetInstanceUID,r.ReferencedSOPInstanceUID=u,r.frameNumber=d,a.splice(n,1))}}function q(e,t,n){const{coords:r}=e,o=e.coords[0].ReferencedSOPSequence&&e.coords[0].ReferencedSOPSequence?.ReferencedFrameNumber||1;if(n&&Number(n)!==Number(o))return!1;for(let e=0;e<r.length;e++){const n=r[e],{ReferencedSOPInstanceUID:o}=n.ReferencedSOPSequence;if(o===t)return!0}return!1}const _=e=>{const{ValueType:t,GraphicType:n,GraphicData:r}=e,o={ValueType:t,GraphicType:n,GraphicData:r};return o.ReferencedSOPSequence=e.ContentSequence?.ReferencedSOPSequence,o.ReferencedFrameOfReferenceSequence=e.ReferencedFrameOfReferenceUID||e.ContentSequence?.ReferencedFrameOfReferenceSequence,o};function k(e,t){const{CodeMeaning:n}=e,{NumericValue:r,MeasurementUnitsCodeSequence:o}=t,{CodeValue:a}=o;return{label:n,value:`${r?Number(r).toFixed(2):""} ${a}`}}function V(e){return e?Array.isArray(e)?e:[e]:[]}const L=function(e){const{servicesManager:t,extensionManager:n}=e,r=e=>M(e,t,n);return[{name:C,sopClassUids:x,getDisplaySetsFromSeries:r},{name:T,sopClassUids:[D.Comprehensive3DSR],getDisplaySetsFromSeries:r}]},A={id:"@ohif/sr",name:"SR Key Images",protocolMatchingRules:[],toolGroupIds:["default"],numberOfPriorsReferenced:0,defaultViewport:{viewportOptions:{viewportType:"stack",toolGroupId:"default",allowUnmatchedView:!0},displaySets:[{id:"srDisplaySetId",matchedDisplaySetsIndex:-1}]},displaySetSelectors:{srDisplaySetId:{seriesMatchingRules:[{attribute:"Modality",constraint:{equals:"SR"}}]}},stages:[{name:"SR Key Images",viewportStructure:{layoutType:"grid",properties:{rows:1,columns:1}},viewports:[{viewportOptions:{allowUnmatchedView:!0},displaySets:[{id:"srDisplaySetId"}]}]}]};var F=m(111),j=m.n(F);const{log:B}=n();const $=function(e,t){const n={};function r(r,o){if(!r.metadata?.referencedImageId)return void B.warn(`[DICOMSR] No referencedImageId found for ${o} ${r.id}`);const a=r.metadata.referencedImageId;n[a]||(n[a]={});const s=n[a];s[o]||(s[o]={data:[]});const i=e.find(e=>e.uid===r.annotationUID),c=s[o].data;let{finding:l}=i;const u=[];i.label&&(t.includes(o)?l={CodeValue:"CORNERSTONEFREETEXT",CodingSchemeDesignator:"CORNERSTONEJS",CodeMeaning:i.label}:u.push({CodeValue:"CORNERSTONEFREETEXT",CodingSchemeDesignator:"CORNERSTONEJS",CodeMeaning:i.label})),i.findingSites&&u.push(...i.findingSites);const d=Object.assign({},r,{finding:l,findingSites:u});c.push(d)}const o=e.map(e=>e.uid).slice(),a=i.annotation.state.getAnnotationManager(),s=a.getFramesOfReference();for(let e=0;e<s.length;e++){const t=s[e],i=a.getAnnotations(t),c=Object.keys(i);for(let e=0;e<c.length;e++){const t=c[e],a=i[t];if(a)for(let e=0;e<a.length;e++){const s=a[e],i=o.findIndex(e=>e===s.annotationUID);if(-1!==i&&(r(s,t),o.splice(i,1),!o.length))return n}}}return n},{CodeScheme:G}=s.adaptersSR.Cornerstone3D;const{locking:W}=i.annotation,{guid:H}=n().utils,{MeasurementReport:z,CORNERSTONE_3D_TAG:Y}=s.adaptersSR.Cornerstone3D,{CORNERSTONE_3D_TOOLS_SOURCE_NAME:X,CORNERSTONE_3D_TOOLS_SOURCE_VERSION:J}=a.Enums,K=(e,t)=>{if(!t||"CORNERSTONEJS"===t.CodingSchemeDesignator)return;const n=`${t.CodingSchemeDesignator}:${t.CodeValue}`;return{...e[n],ref:n,...t,text:t.CodeMeaning}},Q=(e,t)=>{if(!t||!t.length)return;const n=[];for(let r=0;r<t.length;r++){const o=K(e,t[r][0]||t[r]);o&&n.push(o)}return n.length&&n||void 0};function Z({servicesManager:e,extensionManager:n,commandsManager:r},o){const a=n.getActiveDataSource()[0],{measurementService:s,displaySetService:i,customizationService:l}=e.services,u=l.getCustomization("codingValues"),d=l.getCustomization("panelMeasurement.disableEditing"),f=i.getDisplaySetByUID(o),p=s.getSourceMappings(X,J);if(!p||!p.length)throw new Error("Attempting to hydrate measurements service when no mappings present. This shouldn't be reached.");const m=t.DicomMetadataStore.getInstance(f.StudyInstanceUID,f.SeriesInstanceUID,f.SOPInstanceUID),S={},g={};f.measurements.forEach(e=>{const{ReferencedSOPInstanceUID:t,imageId:n,frameNumber:r}=e;S[t]||(S[t]=n,g[t]=[]),g[t][r]||(g[t][r]=n)});const h=m;let I=z.generateToolState(h,S,c.utilities.imageToWorldCoords,c.metaData);const y=l.getCustomization("onBeforeSRHydration")?.value;"function"==typeof y&&(I=y({storedMeasurementByAnnotationType:I,displaySet:f}));const C=p.map(e=>e.annotationType),R={};Object.keys(I).forEach(e=>{C.includes(e)&&(R[e]=I[e])});const T=[];let O;Object.keys(R).forEach(e=>{R[e].forEach(e=>{const t=e.annotation.data&&e.annotation.data.frameNumber||1,n=g[e.sopInstanceUid][t]||S[e.sopInstanceUid];T.includes(n)||T.push(n)})});const D=[];for(let e=0;e<T.length;e++){const t=T[e],{SeriesInstanceUID:n,StudyInstanceUID:r}=c.metaData.get("instance",t);D.includes(n)||D.push(n),O?O!==r&&console.warn("NO SUPPORT FOR SRs THAT HAVE MEASUREMENTS FROM MULTIPLE STUDIES."):O=r}return Object.keys(R).forEach(e=>{R[e].forEach(t=>{const n=t.annotation.data&&t.annotation.data.frameNumber||1,o=g[t.sopInstanceUid][n]||S[t.sopInstanceUid];t.uid=H();const i=c.metaData.get("instance",o),{FrameOfReferenceUID:l}=i,f={annotationUID:t.annotation.annotationUID,data:t.annotation.data,metadata:{toolName:e,referencedImageId:o,FrameOfReferenceUID:l}},m=s.getSource(X,J);f.data.label=function(e){const{findingSites:t=[],finding:n}=e;let r=t.find(e=>e.CodeValue===G.codeValues.CORNERSTONEFREETEXT);return r?r.CodeMeaning:n&&n.CodeValue===G.codeValues.CORNERSTONEFREETEXT?n.CodeMeaning:void 0}(t),f.data.finding=K(u,t.finding?.[0]),f.data.findingSites=Q(u,t.findingSites),f.data.findingSites?.forEach(e=>{e.type&&(f.data[e.type]=e)});const h=p.find(t=>t.annotationType===e),I=s.addRawMeasurement(m,e,{annotation:f},h.toMeasurementSchema,a);r.runCommand("updateMeasurement",{uid:I,code:f.data.finding}),d&&W.setAnnotationLocked(I,!0),T.includes(o)||T.push(o)})}),f.isHydrated=!0,{StudyInstanceUID:O,SeriesInstanceUIDs:D}}const{MeasurementReport:ee}=s.adaptersSR.Cornerstone3D,{log:te}=n(),ne=(e,t,n={})=>{const r=$(e,t),o=ee.generateReport(r,c.metaData,c.utilities.worldToImageCoords,n),{dataset:a}=o;return void 0===a.SpecificCharacterSet&&(a.SpecificCharacterSet="ISO_IR 192"),a.InstanceNumber=n.InstanceNumber??1,a},re=e=>{const{servicesManager:n,extensionManager:r,commandsManager:o}=e,{customizationService:a,viewportGridService:s,displaySetService:i}=n.services,c={changeColorMeasurement:({uid:e})=>{throw new Error("Unsupported operation: changeColorMeasurement")},downloadReport:({measurementData:e,additionalFindingTypes:t,options:n={}})=>{const r=ne(e,t,n),o=j().data.datasetToBlob(r),a=URL.createObjectURL(o);window.location.assign(a)},storeMeasurements:async({measurementData:e,dataSource:n,additionalFindingTypes:r,options:o={}})=>{if(te.info("[DICOMSR] storeMeasurements"),!n||!n.store||!n.store.dicom)return te.error("[DICOMSR] datasource has no dataSource.store.dicom endpoint!"),Promise.reject({});try{const s=ne(e,r,o),{StudyInstanceUID:i,ContentSequence:c}=s;if(!c?.[4].ContentSequence?.length)throw console.log("naturalizedReport missing imaging content",s),new Error("Invalid report, no content");const l=a.getCustomization("onBeforeDicomStore");let u;return"function"==typeof l&&(u=l({dicomDict:u,measurementData:e,naturalizedReport:s})),await n.store.dicom(s,null,u),i&&n.deleteStudyMetadataPromise(i),t.DicomMetadataStore.addInstances([s],!0),s}catch(e){throw console.warn(e),te.error(`[DICOMSR] Error while saving the measurements: ${e.message}`),new Error(e.message||"Error while saving the measurements.")}},hydrateStructuredReport:({displaySetInstanceUID:e})=>Z({servicesManager:n,extensionManager:r,commandsManager:o},e)};return{actions:c,definitions:{downloadReport:c.downloadReport,storeMeasurements:c.storeMeasurements,hydrateStructuredReport:c.hydrateStructuredReport},defaultContext:"CORNERSTONE_STRUCTURED_REPORT"}};var oe=m(942);class ae extends i.AnnotationTool{constructor(e={},t={configuration:{}}){super(e,t),this.isPointNearTool=()=>null,this.getHandleNearImagePoint=()=>null,this.renderAnnotation=(e,t)=>{const{viewport:n}=e,{element:r}=n;let o=i.annotation.state.getAnnotations(this.getToolName(),r);if(!o?.length)return;if(o=this.filterInteractableAnnotationsForElement(r,o),!o?.length)return;const a=(0,oe.eF)(r),{activeIndex:s,trackingUniqueIdentifiers:c}=a,l=c[s],d=o.filter(e=>c.includes(e.data?.TrackingUniqueIdentifier));if(!n._actors?.size)return;const f={toolGroupId:this.toolGroupId,toolName:this.getToolName(),viewportId:e.viewport.id},{style:p}=i.annotation.config;for(let e=0;e<d.length;e++){const r=d[e],o=r.annotationUID,{renderableData:a,TrackingUniqueIdentifier:s}=r.data,{referencedImageId:c}=r.metadata;f.annotationUID=o;const m=p.getToolGroupToolStyles(this.toolGroupId)[this.getToolName()],S=this.getStyle("lineWidth",f,r),g=this.getStyle("lineDash",f,r),h={color:s===l?"rgb(0, 255, 0)":this.getStyle("color",f,r),lineDash:g,lineWidth:S,...m};Object.keys(a).forEach(e=>{const s=a[e];let l,d;switch(e){case u.sh.POINT:l=this.renderPoint;break;case u.sh.MULTIPOINT:l=this.renderMultipoint;break;case u.sh.POLYLINE:l=this.renderPolyLine;break;case u.sh.CIRCLE:l=this.renderEllipse;break;case u.sh.ELLIPSE:l=this.renderEllipse,d=i.utilities.math.ellipse.getCanvasEllipseCorners;break;default:throw new Error(`Unsupported GraphicType: ${e}`)}const p=l(t,n,s,o,c,h);this.renderTextBox(t,n,p,d,r,f,h)})}}}_getTextBoxLinesFromLabels(e){const t=Math.min(e.length,5),n=[];for(let r=0;r<t;r++){const t=e[r];n.push(`${ie(t.label)}: ${t.value}`)}return n}renderPolyLine(e,t,n,r,o,a){const s={color:a.color,width:a.lineWidth,lineDash:a.lineDash};let c=[];return n.map((n,o)=>{const a=n.map(e=>t.worldToCanvas(e)),l=`${o}`;2===a.length?i.drawing.drawLine(e,r,l,a[0],a[1],s):i.drawing.drawPolyline(e,r,l,a,s),c=c.concat(a)}),c}renderMultipoint(e,t,n,r,o,a){let s;n.map((n,o)=>{s=n.map(e=>t.worldToCanvas(e));i.drawing.drawHandles(e,r,"0",s,{color:a.color})})}renderPoint(e,t,n,r,o,a){const s=[];return n.map((n,l)=>{const u=n[0];if(s.push(t.worldToCanvas(u)),void 0!==n[1])s.push(t.worldToCanvas(n[1]));else{const e=c.metaData.get("imagePixelModule",o);let n=10,r=10;if(e){const{columns:t,rows:o}=e;n=t/10,r=o/10}const a=c.utilities.worldToImageCoords(o,u),i=c.utilities.imageToWorldCoords(o,[a[0]+n,a[1]+r]);s.push(t.worldToCanvas(i))}const d=`${l}`;i.drawing.drawArrow(e,r,d,s[1],s[0],{color:a.color,width:a.lineWidth})}),s}renderEllipse(e,t,n,r,o,a){let s;return n.map((n,o)=>{if(0===n.length)return;const c=n,l=t.getRotation();let u;s=c.map(e=>t.worldToCanvas(e)),u=90==l||270==l?i.utilities.math.ellipse.getCanvasEllipseCorners([s[2],s[3],s[0],s[1]]):i.utilities.math.ellipse.getCanvasEllipseCorners(s);const d=`${o}`;i.drawing.drawEllipse(e,r,d,u[0],u[1],{color:a.color,width:a.lineWidth,lineDash:a.lineDash})}),s}renderTextBox(e,t,n,r,o,a,s={}){if(!n||!o)return;const{annotationUID:c,data:l={}}=o,{labels:u}=l,{color:d}=s;let f=n;"function"==typeof r&&(f=r(n));const p=this._getTextBoxLinesFromLabels(u),m=i.utilities.drawing.getTextBoxCoordsCanvas(f);o.data?.handles?.textBox?.worldPosition||(o.data.handles.textBox.worldPosition=t.canvasToWorld(m));const S=t.worldToCanvas(o.data.handles.textBox.worldPosition),g=this.getLinkedTextBoxStyle(a,o),h=i.drawing.drawLinkedTextBox(e,c,"1",p,S,n,{},{...g,color:d}),{x:I,y,width:C,height:R}=h;o.data.handles.textBox.worldBoundingBox={topLeft:t.canvasToWorld([I,y]),topRight:t.canvasToWorld([I+C,y]),bottomLeft:t.canvasToWorld([I,y+R]),bottomRight:t.canvasToWorld([I+C,y+R])}}}ae.toolName=g.DICOMSRDisplay;const se={"Short Axis":"W: ","Long Axis":"L: ",AREA:"Area: ",Length:"",CORNERSTONEFREETEXT:""};function ie(e){const t=se[e];return void 0!==t?t:e}class ce extends i.AnnotationDisplayTool{constructor(e={},t={configuration:{}}){super(e,t),this.isPointNearTool=()=>null,this.getHandleNearImagePoint=()=>null,this.renderAnnotation=(e,t)=>{const{viewport:n}=e,{element:r}=n,o=i.annotation.state.getAnnotations(this.getToolName(),r);if(!o?.length)return;const a=o;if(!n._actors?.size)return;const s={toolGroupId:this.toolGroupId,toolName:this.getToolName(),viewportId:e.viewport.id};for(let e=0;e<a.length;e++){const r=a[e],o=r.annotationUID,{renderableData:c}=r.data,{POINT:l}=c;s.annotationUID=o;const u=this.getStyle("lineWidth",s,r),d=this.getStyle("lineDash",s,r),f={color:this.getStyle("color",s,r),lineDash:d,lineWidth:u},p=l[0][0];if(!n.isReferenceViewable({FrameOfReferenceUID:r.metadata.FrameOfReferenceUID,cameraFocalPoint:p},{asNearbyProjection:!0}))continue;const m=n.worldToCanvas(p),S=[m,[m[0]+20,m[1]+20]];i.drawing.drawArrow(t,o,"1",S[1],S[0],{color:f.color,width:f.lineWidth}),this.renderTextBox(t,n,S,r,s,f)}}}_getTextBoxLinesFromLabels(e){Math.min(e.length,5);return[]}renderTextBox(e,t,n,r,o,a={}){if(!n||!r)return;const{annotationUID:s,data:c={}}=r,{labels:l}=c,u=[];for(const e of l)"363698007"===e.label&&u.push(`Finding Site: ${e.value}`);const{color:d}=a,f=n,p=i.utilities.drawing.getTextBoxCoordsCanvas(f);r.data?.handles?.textBox?.worldPosition||(r.data.handles.textBox.worldPosition=t.canvasToWorld(p));const m=t.worldToCanvas(r.data.handles.textBox.worldPosition),S=this.getLinkedTextBoxStyle(o,r),g=i.drawing.drawLinkedTextBox(e,s,"1",u,m,n,{},{...S,color:d}),{x:h,y:I,width:y,height:C}=g;r.data.handles.textBox.worldBoundingBox={topLeft:t.canvasToWorld([h,I]),topRight:t.canvasToWorld([h+y,I]),bottomLeft:t.canvasToWorld([h,I+C]),bottomRight:t.canvasToWorld([h+y,I+C])}}getLinkedTextBoxStyle(e,t){return{visibility:this.getStyle("textBoxVisibility",e,t),fontFamily:this.getStyle("textBoxFontFamily",e,t),fontSize:this.getStyle("textBoxFontSize",e,t),color:this.getStyle("textBoxColor",e,t),shadow:this.getStyle("textBoxShadow",e,t),background:this.getStyle("textBoxBackground",e,t),lineWidth:this.getStyle("textBoxLinkLineWidth",e,t),lineDash:this.getStyle("textBoxLinkLineDash",e,t)}}}ce.toolName=g.SRSCOORD3DPoint;const le={toAnnotation:e=>{},toMeasurement:(e,t,n,r,o)=>{const{annotation:a}=e,{metadata:s,data:i,annotationUID:c}=a;if(!s||!i)return console.warn("Probe tool: Missing metadata or data"),null;const{toolName:l}=s,{points:u}=i.handles,d=function(e){const{data:t}=e;if(!t)return[""];const{labels:n}=t,r=[];for(const e of n)"33636980076"===e.label&&r.push(`Finding Site: ${e.value}`);return r}(a);return{uid:c,points:u,metadata:s,toolName:s.toolName,label:i.label,displayText:d,data:i.cachedStats,type:r?.(l)??null}}};function ue(e,t,n={}){class r extends t{constructor(e,t){e.configuration=e.configuration?{...e.configuration,...n}:n,super(e,t)}}r.toolName=e,(0,i.addTool)(r)}const{CORNERSTONE_3D_TOOLS_SOURCE_NAME:de,CORNERSTONE_3D_TOOLS_SOURCE_VERSION:fe}=a.Enums;var pe=m(291);function me(){return me=Object.assign?Object.assign.bind():function(e){for(var t=1;t<arguments.length;t++){var n=arguments[t];for(var r in n)({}).hasOwnProperty.call(n,r)&&(e[r]=n[r])}return e},me.apply(null,arguments)}const Se=e.lazy(()=>Promise.resolve().then(m.bind(m,525))),ge=t=>e.createElement(e.Suspense,{fallback:e.createElement("div",null,"Loading...")},e.createElement(Se,t)),he={id:y,onModeEnter:function({servicesManager:e}){const{displaySetService:t}=e.services;[...t.getDisplaySetCache().values()].filter(e=>e.SOPClassHandlerId===R||e.SOPClassHandlerId===O).forEach(e=>{e.isHydrated=!1})},preRegistration:function({configuration:e={},servicesManager:t}){const{measurementService:n,cornerstoneViewportService:r}=t.services;ue(g.DICOMSRDisplay,ae),ue(g.SRLength,i.LengthTool),ue(g.SRBidirectional,i.BidirectionalTool),ue(g.SREllipticalROI,i.EllipticalROITool),ue(g.SRCircleROI,i.CircleROITool),ue(g.SRArrowAnnotate,i.ArrowAnnotateTool),ue(g.SRAngle,i.AngleTool),ue(g.SRPlanarFreehandROI,i.PlanarFreehandROITool),ue(g.SRRectangleROI,i.RectangleROITool),ue(g.SRSCOORD3DPoint,ce),ue(g.SRCobbAngle,i.CobbAngleTool);const o=n.getSource(de,fe),{POINT:a}=n.VALUE_TYPES;n.addMapping(o,"SRSCOORD3DPoint",a,le.toAnnotation,le.toMeasurement);const s={lineDash:"4,4"};i.annotation.config.style.setToolGroupToolStyles("SRToolGroup",{[g.DICOMSRDisplay]:s,SRLength:s,SRBidirectional:s,SREllipticalROI:s,SRCircleROI:s,SRArrowAnnotate:s,SRCobbAngle:s,SRAngle:s,SRPlanarFreehandROI:s,SRRectangleROI:s,global:{}})},getViewportModule:({servicesManager:t,extensionManager:n})=>[{name:"dicom-sr",component:r=>e.createElement(ge,me({servicesManager:t,extensionManager:n},r))}],getCommandsModule:re,getSopClassHandlerModule:L,getUtilityModule:({servicesManager:e})=>[{name:"tools",exports:{toolNames:g}}]}})(),S=m.O(S)})());

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone-dicom-sr",
-  "version": "3.11.0-beta.9",
+  "version": "3.11.0-beta.91",
   "description": "OHIF extension for an SR Cornerstone Viewport",
   "author": "OHIF",
   "license": "MIT",
@@ -34,11 +34,11 @@
     "test:unit:ci": "jest --ci --runInBand --collectCoverage --passWithNoTests"
   },
   "peerDependencies": {
-    "@ohif/core": "3.11.0-beta.9",
-    "@ohif/extension-cornerstone": "3.11.0-beta.9",
-    "@ohif/extension-measurement-tracking": "3.11.0-beta.9",
-    "@ohif/ui": "3.11.0-beta.9",
-    "dcmjs": "*",
+    "@ohif/core": "3.11.0-beta.91",
+    "@ohif/extension-cornerstone": "3.11.0-beta.91",
+    "@ohif/extension-measurement-tracking": "3.11.0-beta.91",
+    "@ohif/ui": "3.11.0-beta.91",
+    "dcmjs": "^0.42.0",
     "dicom-parser": "^1.8.9",
     "hammerjs": "^2.0.8",
     "prop-types": "^15.6.2",
@@ -46,9 +46,9 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.20.13",
-    "@cornerstonejs/adapters": "^3.9.5",
-    "@cornerstonejs/core": "^3.9.5",
-    "@cornerstonejs/tools": "^3.9.5",
+    "@cornerstonejs/adapters": "^3.30.3",
+    "@cornerstonejs/core": "^3.30.3",
+    "@cornerstonejs/tools": "^3.30.3",
     "classnames": "^2.3.2"
   }
 }