npm - @ohif/extension-cornerstone-dicom-seg - Versions diffs - 3.9.0-beta.98 → 3.9.0 - Mend

@ohif/extension-cornerstone-dicom-seg 3.9.0-beta.98 → 3.9.0

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package/dist/ohif-extension-cornerstone-dicom-seg.umd.js CHANGED Viewed

@@ -1,2 +1,2 @@
 /*! For license information please see ohif-extension-cornerstone-dicom-seg.umd.js.LICENSE.txt */
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n;t>0&&(e.rgba=e.RecommendedDisplayCIELabValue,e.rgba?e.rgba=(n=e.rgba,c().data.Colors.dicomlab2RGB(n).map((e=>Math.round(255*e)))):(h=!1,e.rgba=a.CONSTANTS.COLOR_LUT[t%a.CONSTANTS.COLOR_LUT.length]))})),v.overlappingSegments&&l.show({title:"Overlapping Segments",message:"Unsupported overlapping segments detected, segmentation rendering results may be incorrect.",type:"warning"});h||l.show({title:"DICOM SEG import",message:"RecommendedDisplayCIELabValue not found for one or more segments. The default color was used instead.",type:"warning",duration:5e3});Object.assign(n,v)}({extensionManager:n,servicesManager:t,segDisplaySet:e,headers:r})}catch(t){return e.loading=!1,l(t)}u.createSegmentationForSEGDisplaySet(e).then((()=>{e.loading=!1,i()})).catch((t=>{e.loading=!1,l(t)}))})),l[i]}(I,n,i,e),[I]}const p=function({servicesManager:e,extensionManager:t}){return[{name:"dicom-seg",sopClassUids:u,getDisplaySetsFromSeries:n=>d(n,e,t)}]},f={id:"@ohif/seg",name:"Segmentations",protocolMatchingRules:[],toolGroupIds:["default"],numberOfPriorsReferenced:0,defaultViewport:{viewportOptions:{viewportType:"stack",toolGroupId:"default",allowUnmatchedView:!0,syncGroups:[{type:"hydrateseg",id:"sameFORId",source:!0,target:!0}]},displaySets:[{id:"segDisplaySetId",matchedDisplaySetsIndex:-1}]},displaySetSelectors:{segDisplaySetId:{seriesMatchingRules:[{attribute:"Modality",constraint:{equals:"SEG"}}]}},stages:[{name:"Segmentations",viewportStructure:{layoutType:"grid",properties:{rows:1,columns:1}},viewports:[{viewportOptions:{allowUnmatchedView:!0,syncGroups:[{type:"hydrateseg",id:"sameFORId",source:!0,target:!0}]},displaySets:[{id:"segDisplaySetId"}]}]}]};const m=function(){return[{name:f.id,protocol:f}]};var y=g(438),v=g(934),h=g.n(v),b=g(670),w=g.n(b),I=g(322),E=g.n(I);const{segmentation:D}=a.utilities,{datasetToBlob:C}=c().data,{Cornerstone3D:{Segmentation:{generateSegmentation:O}}}=s.adaptersSEG,{Cornerstone3D:{RTSS:{generateRTSSFromSegmentations:T}}}=s.adaptersRT,{downloadDICOMData:k}=s.helpers,x=({servicesManager:e,extensionManager:t})=>{const{segmentationService:n,uiDialogService:s,displaySetService:i,viewportGridService:u,toolGroupService:l}=e.services,d={loadSegmentationsForViewport:async({segmentations:e,viewportId:t})=>{const r=(({viewportId:e,viewportGridService:t})=>{const{viewports:n,activeViewportId:r}=t.getState(),o=e||r;return n.get(o)})({viewportId:t,viewportGridService:u}),o=r.displaySetInstanceUIDs[0],a=e[0],s=a.segmentationId,c=a.config.label,l=a.config.segments,d=i.getDisplaySetByUID(o);return await n.createLabelmapForDisplaySet(d,{segmentationId:s,segments:l,label:c}),n.addOrUpdateSegmentation(a),await n.addSegmentationRepresentation(r.viewportId,{segmentationId:s}),s},generateSegmentation:({segmentationId:e,options:t={}})=>{const r=a.segmentation.state.getSegmentation(e),{imageIds:s}=r.representationData.Labelmap,i=s.map((e=>o.cache.getImage(e))),u=i.map((e=>o.cache.getImage(e.referencedImageId))),l=[];let d=0;for(const e of i){const t=new Set,n=e.getPixelData(),{rows:r,columns:o}=e;for(let e=0;e<n.length;e++){const r=n[e];0!==r&&t.add(r)}l[d++]={segmentsOnLabelmap:Array.from(t),pixelData:n,rows:r,columns:o}}const p=l.map((e=>e.segmentsOnLabelmap)),f={segmentsOnLabelmap:Array.from(new Set(p.flat())),metadata:[],labelmaps2D:l},m=n.getSegmentation(e),g=n.getRepresentationsForSegmentation(e);Object.entries(m.segments).forEach((([t,r])=>{if(!r)return;const{label:o}=r,a=g[0],s=n.getSegmentColor(a.viewportId,e,r.segmentIndex),i=c().data.Colors.rgb2DICOMLAB(s.slice(0,3).map((e=>e/255))).map((e=>Math.round(e))),u={SegmentNumber:t.toString(),SegmentLabel:o,SegmentAlgorithmType:r?.algorithmType||"MANUAL",SegmentAlgorithmName:r?.algorithmName||"OHIF Brush",RecommendedDisplayCIELabValue:i,SegmentedPropertyCategoryCodeSequence:{CodeValue:"T-D0050",CodingSchemeDesignator:"SRT",CodeMeaning:"Tissue"},SegmentedPropertyTypeCodeSequence:{CodeValue:"T-D0050",CodingSchemeDesignator:"SRT",CodeMeaning:"Tissue"}};f.metadata[t]=u}));return O(u,f,o.metaData,t)},downloadSegmentation:({segmentationId:e})=>{const t=n.getSegmentation(e),r=d.generateSegmentation({segmentationId:e});k(r.dataset,`${t.label}`)},storeSegmentation:async({segmentationId:e,dataSource:o})=>{const a=await(0,y.createReportDialogPrompt)(s,{extensionManager:t});if(1!==a.action&&!a.value)return;const i=n.getSegmentation(e);if(!i)throw new Error("No segmentation found");const{label:c}=i,u=a.value||c||"Research Derived Series",l=d.generateSegmentation({segmentationId:e,options:{SeriesDescription:u}});if(!l||!l.dataset)throw new Error("Error during segmentation generation");const{dataset:p}=l;return await o.store.dicom(p),p.wadoRoot=o.getConfig().wadoRoot,r.DicomMetadataStore.addInstances([p],!0),p},downloadRTSS:({segmentationId:e})=>{const t=n.getSegmentation(e),s={vtkImageMarchingSquares:h(),vtkDataArray:w(),vtkImageData:E()},i=T(t,r.classes.MetadataProvider,r.DicomMetadataStore,o.cache,a.Enums,s);try{const e=C(i),t=URL.createObjectURL(e);window.location.assign(t)}catch(e){console.warn(e)}},setBrushSize:({value:e,toolNames:t})=>{const n=Number(e);l.getToolGroupIds()?.forEach((e=>{0===t?.length?D.setBrushSizeForToolGroup(e,n):t?.forEach((t=>{D.setBrushSizeForToolGroup(e,n,t)}))}))},setThresholdRange:({value:e,toolNames:t=["ThresholdCircularBrush","ThresholdSphereBrush"]})=>{l.getToolGroupIds()?.forEach((n=>{const r=l.getToolGroup(n);t?.forEach((t=>{r.setToolConfiguration(t,{strategySpecificConfiguration:{THRESHOLD:{threshold:e}}})}))}))}},p={loadSegmentationDisplaySetsForViewport:{commandFn:d.loadSegmentationDisplaySetsForViewport},loadSegmentationsForViewport:{commandFn:d.loadSegmentationsForViewport},generateSegmentation:{commandFn:d.generateSegmentation},downloadSegmentation:{commandFn:d.downloadSegmentation},storeSegmentation:{commandFn:d.storeSegmentation},downloadRTSS:{commandFn:d.downloadRTSS},setBrushSize:{commandFn:d.setBrushSize},setThresholdRange:{commandFn:d.setThresholdRange}};return{actions:d,definitions:p,defaultContext:"SEGMENTATION"}};function j(){return j=Object.assign?Object.assign.bind():function(e){for(var t=1;t<arguments.length;t++){var n=arguments[t];for(var r in n)({}).hasOwnProperty.call(n,r)&&(e[r]=n[r])}return e},j.apply(null,arguments)}const N=n.lazy((()=>Promise.resolve().then(g.bind(g,292)))),R=e=>n.createElement(n.Suspense,{fallback:n.createElement("div",null,"Loading...")},n.createElement(N,e)),M={id:e,getCommandsModule:x,getToolbarModule:function({servicesManager:e}){const{segmentationService:t,toolbarService:n,toolGroupService:r}=e.services;return[{name:"evaluate.cornerstone.segmentation",evaluate:({viewportId:e,button:o,toolNames:a,disabledText:s})=>{const i=t.getSegmentationRepresentations(e);if(!i?.length)return{disabled:!0,className:"!text-common-bright !bg-black opacity-50",disabledText:s??"No segmentations available"};const c=r.getToolGroupForViewport(e);if(!c)return{disabled:!0,className:"!text-common-bright ohif-disabled",disabledText:s??"Not available on the current viewport"};const u=n.getToolNameForButton(o);if(!c.hasTool(u)&&!a)return{disabled:!0,className:"!text-common-bright ohif-disabled",disabledText:s??"Not available on the current viewport"};const l=a?a.includes(c.getActivePrimaryMouseButtonTool()):c.getActivePrimaryMouseButtonTool()===u;return{disabled:!1,className:l?"!text-black !bg-primary-light hover:bg-primary-light hover-text-black hover:cursor-pointer":"!text-common-bright !bg-black hover:bg-primary-light hover:cursor-pointer hover:text-black",isActive:l}}}]},getViewportModule:({servicesManager:e,extensionManager:t,commandsManager:r})=>[{name:"dicom-seg",component:o=>n.createElement(R,j({servicesManager:e,extensionManager:t,commandsManager:r},o))}],getSopClassHandlerModule:p,getHangingProtocolModule:m}})(),S=g.O(S)})()));

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@ohif/extension-cornerstone-dicom-seg",
-  "version": "3.9.0-beta.98",
+  "version": "3.9.0",
   "description": "DICOM SEG read workflow",
   "author": "OHIF",
   "license": "MIT",
@@ -33,10 +33,10 @@
     "start": "yarn run dev"
   },
   "peerDependencies": {
-    "@ohif/core": "3.9.0-beta.98",
-    "@ohif/extension-cornerstone": "3.9.0-beta.98",
-    "@ohif/extension-default": "3.9.0-beta.98",
-    "@ohif/i18n": "3.9.0-beta.98",
+    "@ohif/core": "3.9.0",
+    "@ohif/extension-cornerstone": "3.9.0",
+    "@ohif/extension-default": "3.9.0",
+    "@ohif/i18n": "3.9.0",
     "prop-types": "^15.6.2",
     "react": "^18.3.1",
     "react-dom": "^18.3.1",
@@ -46,9 +46,9 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.20.13",
-    "@cornerstonejs/adapters": "^1.81.6",
-    "@cornerstonejs/core": "^1.81.6",
-    "@kitware/vtk.js": "30.4.1",
+    "@cornerstonejs/adapters": "^2.2.3",
+    "@cornerstonejs/core": "^2.2.3",
+    "@kitware/vtk.js": "32.1.0",
     "react-color": "^2.19.3"
   }
 }

package/dist/ohif-extension-cornerstone-dicom-seg.css DELETED Viewed

	@@ -1 +0,0 @@
1	- .chrome-picker{background:#090c29!important}