@oceanum/datamesh 0.7.1 → 0.7.2

package/dist/index.cjs

@@ -6,4 +6,4 @@
 Use "options.replacer" or "options.ignoreUnknown"
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us{constructor(){this.builtInEncoders=[],this.builtInDecoders=[],this.encoders=[],this.decoders=[],this.register(Pf)}register({type:t,encode:e,decode:n}){if(t>=0)this.encoders[t]=e,this.decoders[t]=n;else{const s=-1-t;this.builtInEncoders[s]=e,this.builtInDecoders[s]=n}}tryToEncode(t,e){for(let n=0;n<this.builtInEncoders.length;n++){const s=this.builtInEncoders[n];if(s!=null){const i=s(t,e);if(i!=null){const c=-1-n;return new En(c,i)}}}for(let n=0;n<this.encoders.length;n++){const s=this.encoders[n];if(s!=null){const i=s(t,e);if(i!=null){const c=n;return new En(c,i)}}}return t instanceof En?t:null}decode(t,e,n){const s=e<0?this.builtInDecoders[-1-e]:this.decoders[e];return s?s(t,e,n):new En(e,t)}}us.defaultCodec=new us;function $f(r){return r instanceof ArrayBuffer||typeof SharedArrayBuffer<"u"&&r instanceof SharedArrayBuffer}function na(r){return r instanceof Uint8Array?r:ArrayBuffer.isView(r)?new Uint8Array(r.buffer,r.byteOffset,r.byteLength):$f(r)?new Uint8Array(r):Uint8Array.from(r)}function Zi(r){return`${r<0?"-":""}0x${Math.abs(r).toString(16).padStart(2,"0")}`}const zf=16,jf=16;class Vf{constructor(t=zf,e=jf){this.hit=0,this.miss=0,this.maxKeyLength=t,this.maxLengthPerKey=e,this.caches=[];for(let n=0;n<this.maxKeyLength;n++)this.caches.push([])}canBeCached(t){return t>0&&t<=this.maxKeyLength}find(t,e,n){const s=this.caches[n-1];t:for(const i of s){const c=i.bytes;for(let a=0;a<n;a++)if(c[a]!==t[e+a])continue t;return i.str}return null}store(t,e){const n=this.caches[t.length-1],s={bytes:t,str:e};n.length>=this.maxLengthPerKey?n[Math.random()*n.length|0]=s:n.push(s)}decode(t,e,n){const s=this.find(t,e,n);if(s!=null)return this.hit++,s;this.miss++;const i=Nu(t,e,n),c=Uint8Array.prototype.slice.call(t,e,e+n);return this.store(c,i),i}}const hs="array",cn="map_key",Ou="map_value",Wf=r=>{if(typeof r=="string"||typeof r=="number")return r;throw new se("The type of key must be string or number but "+typeof r)};class Zf{constructor(){this.stack=[],this.stackHeadPosition=-1}get length(){return this.stackHeadPosition+1}top(){return this.stack[this.stackHeadPosition]}pushArrayState(t){const e=this.getUninitializedStateFromPool();e.type=hs,e.position=0,e.size=t,e.array=new Array(t)}pushMapState(t){const e=this.getUninitializedStateFromPool();e.type=cn,e.readCount=0,e.size=t,e.map={}}getUninitializedStateFromPool(){if(this.stackHeadPosition++,this.stackHeadPosition===this.stack.length){const t={type:void 0,size:0,array:void 0,position:0,readCount:0,map:void 0,key:null};this.stack.push(t)}return this.stack[this.stackHeadPosition]}release(t){if(this.stack[this.stackHeadPosition]!==t)throw new Error("Invalid stack state. Released state is not on top of the stack.");if(t.type===hs){const n=t;n.size=0,n.array=void 0,n.position=0,n.type=void 0}if(t.type===cn||t.type===Ou){const n=t;n.size=0,n.map=void 0,n.readCount=0,n.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}}const qr=-1,Gs=new DataView(new ArrayBuffer(0)),Gf=new Uint8Array(Gs.buffer);try{Gs.getInt8(0)}catch(r){if(!(r instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}const ia=new RangeError("Insufficient data"),Yf=new Vf;class Ys{constructor(t){this.totalPos=0,this.pos=0,this.view=Gs,this.bytes=Gf,this.headByte=qr,this.stack=new Zf,this.entered=!1,this.extensionCodec=t?.extensionCodec??us.defaultCodec,this.context=t?.context,this.useBigInt64=t?.useBigInt64??!1,this.rawStrings=t?.rawStrings??!1,this.maxStrLength=t?.maxStrLength??Hr,this.maxBinLength=t?.maxBinLength??Hr,this.maxArrayLength=t?.maxArrayLength??Hr,this.maxMapLength=t?.maxMapLength??Hr,this.maxExtLength=t?.maxExtLength??Hr,this.keyDecoder=t?.keyDecoder!==void 0?t.keyDecoder:Yf,this.mapKeyConverter=t?.mapKeyConverter??Wf}clone(){return new Ys({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=qr,this.stack.reset()}setBuffer(t){const e=na(t);this.bytes=e,this.view=new DataView(e.buffer,e.byteOffset,e.byteLength),this.pos=0}appendBuffer(t){if(this.headByte===qr&&!this.hasRemaining(1))this.setBuffer(t);else{const e=this.bytes.subarray(this.pos),n=na(t),s=new Uint8Array(e.length+n.length);s.set(e),s.set(n,e.length),this.setBuffer(s)}}hasRemaining(t){return this.view.byteLength-this.pos>=t}createExtraByteError(t){const{view:e,pos:n}=this;return new RangeError(`Extra ${e.byteLength-n} of ${e.byteLength} byte(s) found at buffer[${t}]`)}decode(t){if(this.entered)return this.clone().decode(t);try{this.entered=!0,this.reinitializeState(),this.setBuffer(t);const e=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return e}finally{this.entered=!1}}*decodeMulti(t){if(this.entered){yield*this.clone().decodeMulti(t);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(t);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(t){if(this.entered)return this.clone().decodeAsync(t);try{this.entered=!0;let e=!1,n;for await(const a of t){if(e)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(a);try{n=this.doDecodeSync(),e=!0}catch(d){if(!(d instanceof RangeError))throw d}this.totalPos+=this.pos}if(e){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return n}const{headByte:s,pos:i,totalPos:c}=this;throw new RangeError(`Insufficient data in parsing ${Zi(s)} at ${c} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(t){return this.decodeMultiAsync(t,!0)}decodeStream(t){return this.decodeMultiAsync(t,!1)}async*decodeMultiAsync(t,e){if(this.entered){yield*this.clone().decodeMultiAsync(t,e);return}try{this.entered=!0;let n=e,s=-1;for await(const i of t){if(e&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),n&&(s=this.readArraySize(),n=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(c){if(!(c instanceof RangeError))throw c}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){t:for(;;){const t=this.readHeadByte();let e;if(t>=224)e=t-256;else if(t<192)if(t<128)e=t;else if(t<144){const s=t-128;if(s!==0){this.pushMapState(s),this.complete();continue t}else e={}}else if(t<160){const s=t-144;if(s!==0){this.pushArrayState(s),this.complete();continue t}else e=[]}else{const s=t-160;e=this.decodeString(s,0)}else if(t===192)e=null;else if(t===194)e=!1;else if(t===195)e=!0;else if(t===202)e=this.readF32();else if(t===203)e=this.readF64();else if(t===204)e=this.readU8();else if(t===205)e=this.readU16();else if(t===206)e=this.readU32();else if(t===207)this.useBigInt64?e=this.readU64AsBigInt():e=this.readU64();else if(t===208)e=this.readI8();else if(t===209)e=this.readI16();else if(t===210)e=this.readI32();else if(t===211)this.useBigInt64?e=this.readI64AsBigInt():e=this.readI64();else if(t===217){const s=this.lookU8();e=this.decodeString(s,1)}else if(t===218){const s=this.lookU16();e=this.decodeString(s,2)}else if(t===219){const s=this.lookU32();e=this.decodeString(s,4)}else if(t===220){const s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue t}else e=[]}else if(t===221){const s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue t}else e=[]}else if(t===222){const s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue t}else e={}}else if(t===223){const s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue t}else e={}}else if(t===196){const s=this.lookU8();e=this.decodeBinary(s,1)}else if(t===197){const s=this.lookU16();e=this.decodeBinary(s,2)}else if(t===198){const s=this.lookU32();e=this.decodeBinary(s,4)}else if(t===212)e=this.decodeExtension(1,0);else if(t===213)e=this.decodeExtension(2,0);else if(t===214)e=this.decodeExtension(4,0);else if(t===215)e=this.decodeExtension(8,0);else if(t===216)e=this.decodeExtension(16,0);else if(t===199){const s=this.lookU8();e=this.decodeExtension(s,1)}else if(t===200){const s=this.lookU16();e=this.decodeExtension(s,2)}else if(t===201){const s=this.lookU32();e=this.decodeExtension(s,4)}else throw new se(`Unrecognized type byte: ${Zi(t)}`);this.complete();const n=this.stack;for(;n.length>0;){const s=n.top();if(s.type===hs)if(s.array[s.position]=e,s.position++,s.position===s.size)e=s.array,n.release(s);else continue t;else if(s.type===cn){if(e==="__proto__")throw new se("The key __proto__ is not allowed");s.key=this.mapKeyConverter(e),s.type=Ou;continue t}else if(s.map[s.key]=e,s.readCount++,s.readCount===s.size)e=s.map,n.release(s);else{s.key=null,s.type=cn;continue t}}return e}}readHeadByte(){return this.headByte===qr&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=qr}readArraySize(){const t=this.readHeadByte();switch(t){case 220:return this.readU16();case 221:return this.readU32();default:{if(t<160)return t-144;throw new se(`Unrecognized array type byte: ${Zi(t)}`)}}}pushMapState(t){if(t>this.maxMapLength)throw new se(`Max length exceeded: map length (${t}) > maxMapLengthLength (${this.maxMapLength})`);this.stack.pushMapState(t)}pushArrayState(t){if(t>this.maxArrayLength)throw new se(`Max length exceeded: array length (${t}) > maxArrayLength (${this.maxArrayLength})`);this.stack.pushArrayState(t)}decodeString(t,e){return!this.rawStrings||this.stateIsMapKey()?this.decodeUtf8String(t,e):this.decodeBinary(t,e)}decodeUtf8String(t,e){if(t>this.maxStrLength)throw new se(`Max length exceeded: UTF-8 byte length (${t}) > maxStrLength (${this.maxStrLength})`);if(this.bytes.byteLength<this.pos+e+t)throw ia;const n=this.pos+e;let s;return this.stateIsMapKey()&&this.keyDecoder?.canBeCached(t)?s=this.keyDecoder.decode(this.bytes,n,t):s=Tf(this.bytes,n,t),this.pos+=e+t,s}stateIsMapKey(){return this.stack.length>0?this.stack.top().type===cn:!1}decodeBinary(t,e){if(t>this.maxBinLength)throw new se(`Max length exceeded: bin length (${t}) > maxBinLength (${this.maxBinLength})`);if(!this.hasRemaining(t+e))throw ia;const n=this.pos+e,s=this.bytes.subarray(n,n+t);return this.pos+=e+t,s}decodeExtension(t,e){if(t>this.maxExtLength)throw new se(`Max length exceeded: ext length (${t}) > maxExtLength (${this.maxExtLength})`);const n=this.view.getInt8(this.pos+e),s=this.decodeBinary(t,e+1);return this.extensionCodec.decode(s,n,this.context)}lookU8(){return this.view.getUint8(this.pos)}lookU16(){return this.view.getUint16(this.pos)}lookU32(){return this.view.getUint32(this.pos)}readU8(){const t=this.view.getUint8(this.pos);return this.pos++,t}readI8(){const t=this.view.getInt8(this.pos);return this.pos++,t}readU16(){const t=this.view.getUint16(this.pos);return this.pos+=2,t}readI16(){const t=this.view.getInt16(this.pos);return this.pos+=2,t}readU32(){const t=this.view.getUint32(this.pos);return this.pos+=4,t}readI32(){const t=this.view.getInt32(this.pos);return this.pos+=4,t}readU64(){const t=Nf(this.view,this.pos);return this.pos+=8,t}readI64(){const t=Fu(this.view,this.pos);return this.pos+=8,t}readU64AsBigInt(){const t=this.view.getBigUint64(this.pos);return this.pos+=8,t}readI64AsBigInt(){const t=this.view.getBigInt64(this.pos);return this.pos+=8,t}readF32(){const t=this.view.getFloat32(this.pos);return this.pos+=4,t}readF64(){const t=this.view.getFloat64(this.pos);return this.pos+=8,t}}function Jf(r,t){return new Ys(t).decode(r)}ya.set("msgpack2",async()=>({kind:"array_to_bytes",fromConfig:(r,t)=>({kind:"array_to_bytes",async encode(e){throw new Error("msgpack2 encode not implemented")},async decode(e){const n=Jf(e),{shape:s}=t,i=new Array(s.length);let c=1;for(let a=s.length-1;a>=0;a--)i[a]=c,c*=s[a];return{data:n,shape:s,stride:i}}})}));function Hf(r){return new Promise(t=>setTimeout(t,r))}const Gi="__cache_created_at";class qf{cache;url;params;cache_prefix;fetchOptions;timeout;ttl;_pending={};_cacheValid;constructor(t,e,n={}){const s={...e};n.parameters&&(s["x-parameters"]=JSON.stringify(n.parameters)),n.chunks&&(s["x-chunks"]=n.chunks),n.downsample&&(s["x-downsample"]=JSON.stringify(n.downsample)),s["x-filtered"]="True",this.params={},e["x-datamesh-auth"]&&(this.params.auth=e["x-datamesh-auth"]),e["x-datamesh-sig"]&&(this.params.sig=e["x-datamesh-sig"]),this.fetchOptions={headers:s},this.url=t,n.nocache&&console.warn("CachedHTTPStore: 'nocache' option is deprecated, use 'ttl: 0' instead"),n.ttl===0||n.nocache||typeof window>"u"?this.cache=void 0:this.cache=Mu("zarr","cache"),this.cache_prefix=Bf({root:t,...n.parameters,chunks:n.chunks,downsample:n.downsample}),this.timeout=n.timeout||6e4,this.ttl=n.ttl}async checkCacheTTL(){if(!this.ttl||!this.cache)return!0;if(this._cacheValid!==void 0)return this._cacheValid;const t=`${this.cache_prefix}${Gi}`,e=await Vi(t,this.cache);return e?(Date.now()-e)/1e3>this.ttl?(this._cacheValid=!1,!1):(this._cacheValid=!0,!0):(this._cacheValid=!0,!0)}async setCacheTimestamp(){if(!this.cache||!this.ttl)return;const t=`${this.cache_prefix}${Gi}`;await Vi(t,this.cache)||await ea(t,Date.now(),this.cache)}async invalidateCache(){if(!this.cache)return;const t=`${this.cache_prefix}${Gi}`;await xn(t,this.cache),this._cacheValid=void 0}async get(t,e,n=0){const s=`${this.cache_prefix}${t}`;let i=null;if(this.cache&&(await this.checkCacheTTL()?i=await Vi(s,this.cache):await this.invalidateCache(),i&&delete this._pending[s],this._pending[s]))if(await Hf(200),n>this.timeout){await xn(s,this.cache),delete this._pending[s],console.error("Zarr timeout");return}else return await this.get(t,e,n+200);if(!i){this._pending[s]=!0;try{const c={...this.fetchOptions,...e,headers:{...this.fetchOptions.headers||{},...e?.headers||{}},signal:AbortSignal.timeout(this.timeout)},a=new URLSearchParams(this.params).toString(),d=await fetch(`${this.url}${t}?${a}`,c);if(d.status===404){this.cache&&await xn(s,this.cache);return}if(d.status>=400)throw new Error(`HTTP error: ${d.status}`);i=new Uint8Array(await d.arrayBuffer()),this.cache&&(await ea(s,i,this.cache),await this.setCacheTimestamp())}catch(c){if(console.debug("Zarr retry:"+s),n<this.timeout/200)return delete this._pending[s],await this.get(t,e,n+200);this.cache&&await xn(s,this.cache),console.error(c);return}finally{delete this._pending[s]}}return i}}const sa=async(r,t=".zarray")=>{const{path:e}=r.resolve(t),n=await r.store.get(e);return n?JSON.parse(new TextDecoder().decode(n)):{}};async function Kf(r){const t=await sa(r,".zattrs"),e=await sa(r);e.dtype.startsWith("<M8")&&(t._dtype=e.dtype),e.fill_value!==void 0&&(t._fill_value=e.fill_value);const n=[];e.order==="F"&&n.push({name:"transpose",configuration:{order:"F"}}),typeof e.dtype=="string"&&e.dtype.startsWith(">")&&n.push({name:"bytes",configuration:{endian:"big"}});for(const{id:i,...c}of e.filters??[])n.push({name:i,configuration:c});if(e.compressor){const{id:i,...c}=e.compressor;n.push({name:i,configuration:c})}const s={zarr_format:3,node_type:"array",shape:e.shape,data_type:"int64",chunk_grid:{name:"regular",configuration:{chunk_shape:e.chunks}},chunk_key_encoding:{name:"v2",configuration:{separator:e.dimension_separator??"."}},codecs:n,fill_value:e.fill_value,attributes:t};return new vr(r.store,r.path,s)}let ku=typeof process<"u"&&!!process.env&&process.env.DATAMESH_DEBUG==="true";function oa(){return ku}function Ti(r,t,e){if(!ku)return e;const n=e.value;return e.value=function(...s){const i=s.map(a=>{if(!a||typeof a!="object")return a;try{return JSON.parse(JSON.stringify(a,(d,f)=>{if(typeof d=="string"){const y=d.toLowerCase();if(y.includes("token")||y.includes("authorization")||y.includes("jwt"))return"[redacted]"}return f}))}catch{return"[unserializable]"}}),c=Date.now();try{const a=n.apply(this,s);if(a&&typeof a.then=="function")return a.finally(()=>{const f=Date.now()-c;console.debug(`@oceanum/datamesh debug: ${t} took ${f}ms`,i)});const d=Date.now()-c;return console.debug(`@oceanum/datamesh debug: ${t} took ${d}ms`,i),a}catch(a){const d=Date.now()-c;throw console.debug(`@oceanum/datamesh debug: ${t} threw after ${d}ms`,i),a}},e}const Js={microseconds:.001,milliseconds:1,seconds:1e3,minutes:60*1e3,hours:60*60*1e3,days:24*60*60*1e3},Xf={day:"days",days:"days",d:"days",hour:"hours",hours:"hours",hr:"hours",hrs:"hours",h:"hours",minute:"minutes",minutes:"minutes",min:"minutes",mins:"minutes",second:"seconds",seconds:"seconds",sec:"seconds",secs:"seconds",s:"seconds",millisecond:"milliseconds",milliseconds:"milliseconds",msec:"milliseconds",msecs:"milliseconds",ms:"milliseconds",microsecond:"microseconds",microseconds:"microseconds",usec:"microseconds",usecs:"microseconds",us:"microseconds"},Mi=new Set(["standard","gregorian","proleptic_gregorian"]);function Ni(r){const t=/^\s*(\w+)\s+since\s+(.+?)\s*$/i,e=r.match(t);if(!e)throw new Error(`Invalid CF time units: "${r}". Expected format: "<unit> since <reference_time>"`);const[,n,s]=e,i=n.toLowerCase(),c=Xf[i];if(!c)throw new Error(`Unsupported time unit: "${n}". Supported units: days, hours, minutes, seconds, milliseconds, microseconds`);const a=Qf(s),d=a.getTime();return{unit:c,referenceDate:a,referenceMs:d,original:r}}function Qf(r){const t=r.trim().replace("T"," ").replace(/Z$/i,""),e=/^(-?\d+)-(\d{1,2})-(\d{1,2})(?:\s+(\d{1,2}):(\d{1,2})(?::(\d{1,2})(?:\.(\d+))?)?)?$/,n=t.match(e);if(!n){const C=new Date(r);if(isNaN(C.getTime()))throw new Error(`Cannot parse reference time: "${r}"`);return C}const[,s,i,c,a,d,f,y]=n,B=parseInt(s,10),L=parseInt(i,10)-1,x=parseInt(c,10),M=a?parseInt(a,10):0,U=d?parseInt(d,10):0,F=f?parseInt(f,10):0;let O=0;if(y){const C=y.padEnd(3,"0").slice(0,3);O=parseInt(C,10)}return new Date(Date.UTC(B,L,x,M,U,F,O))}function tp(r,t,e="standard"){if(!Mi.has(e))throw new Error(`Unsupported calendar: "${e}". Currently only Gregorian calendars are supported: standard, gregorian, proleptic_gregorian`);const n=Ni(t),s=Js[n.unit];if(typeof r=="number")return new Date(n.referenceMs+r*s);const i=[];for(let c=0;c<r.length;c++){const a=r[c];a==null||Number.isNaN(a)?i.push(new Date(NaN)):i.push(new Date(n.referenceMs+a*s))}return i}function ep(r,t,e="standard"){if(!Mi.has(e))throw new Error(`Unsupported calendar: "${e}". 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e};class wi{id;dimensions;attributes;arr;constructor(t,e,n,s){this.id=t,this.dimensions=e,this.attributes=n,this.arr=s}async get(t){if(this.arr.shape.length==0||this.arr.shape[0]==0)return[];const e=t&&t.map(s=>{if(typeof s=="string"){const[i,c,a]=s.split(":");return Hi(parseInt(i),parseInt(c),parseInt(a))}else return s}),n=await Uh(this.arr,e);if(this.arr.dtype=="v2:object"||!n.shape)return n.data;if(this.arr.dtype=="bool")return[...n.data];{const s=this.arr.attrs,i=this.arr.dtype,c=s._dtype;if(c?.startsWith("<M8"))return cp(n,c);if(Uu(s)){const f=s.units,y=s.calendar||"standard";return up(n,f,y)}const a=this.attributes._fill_value,d=a?lp(n.data,a,i):n.data;return pn(d,n.shape,n.stride)}}}sp([Ti],wi.prototype,"get");class Ye{dimensions;variables;attributes;coordkeys;root;constructor(t,e,n,s,i){this.dimensions=t,this.variables=e,this.attributes=n,this.coordkeys=s,this.root=i}static async zarr(t,e,n={}){const s=new qf(t,e,{chunks:n.chunks,downsample:n.downsample,parameters:n.parameters,timeout:n.timeout,nocache:n.nocache,ttl:n.ttl}),i=await mh(s),c=await Ge(i,{kind:"group"}),a={},d={};for(const y of i.contents())if(y.kind=="array"){let B;try{B=await Ge(c.resolve(y.path),{kind:"array"})}catch(U){const F=typeof U=="object"&&U&&"message"in U?String(U.message):void 0;if(F&&F.includes("<M8"))B=await Kf(c.resolve(y.path));else throw U}const L={...B.attrs};if(L._fill_value===void 0){const U=`${y.path}/.zarray`.replace(/^\//,""),F=await i.get(`/${U}`);if(F){const O=JSON.parse(new TextDecoder().decode(F));O.fill_value!==void 0&&(L._fill_value=O.fill_value)}}const x=L._ARRAY_DIMENSIONS,M=y.path.split("/").pop();a[M]=new wi(M,x||[],L,B),x&&x.map((U,F)=>{const O=B.shape[F];if(d[U]&&d[U]!=O)throw new Error(`Inconsistent dimension size for ${U}: ${d[U]} != ${O}`);d[U]=O})}const f=JSON.parse(c.attrs._coordinates||"{}")||{};return new Ye(d,a,c.attrs,n.coordkeys||f,c)}static async fromArrow(t,e){const n={},s={record:t.numRows},i={};return t.schema.fields.forEach(c=>{const a=t.getChild(c.name);let d={},f=a?.toArray(),y=ap(c.type);if(tt.isTimestamp(c.type)){const B=new Float64Array(f.length),L=BigInt(1e3**(c.type.unit-0));for(let x=0;x<f.length;x++)B[x]=Number(f[x]/L);f=B,y="float64",d={unit:"Unix timestamp (s)"}}else if(tt.isBinary(c.type)){const B=[];for(let L=0;L<f.length;L++)B.push(new Tu.Buffer(f[L]).toString("base64"));f=B,y="v2:object"}i[c.name]={dimensions:["record"],attributes:d,data:f,dtype:y}}),await Ye.init({dimensions:s,variables:i,attributes:n},e)}static async fromGeojson(t,e){if(!("features"in t&&Array.isArray(t.features))&&!("geometry"in t))throw new Error("Invalid GeoJSON");const n="features"in t&&t.features?t.features:[t];if(n.length===0)throw new Error("FeatureCollection contains no features");const s=new Set;n.forEach(d=>{d.properties&&Object.keys(d.properties).forEach(f=>s.add(f))});const i=n.map(d=>{const f={geometry:d.geometry};return d.properties&&Object.assign(f,d.properties),f}),c={dimensions:{index:i.length},variables:{},attributes:{}},a=await Ye.init(c,{...e,g:"geometry"});await a.assign("geometry",["index"],i.map(d=>d.geometry),{description:"GeoJSON geometry"});for(const d of s){const f=i.map(y=>y[d]);await a.assign(d,["index"],f,{description:`Property: ${d}`})}return a}static async init(t,e,n){const s=await _n(new Map,{attributes:{created:new Date}}),i=new Ye(t.dimensions,{},t.attributes||{},e||{},s);for(const c in t.variables){const{dimensions:a,attributes:d,data:f,dtype:y,chunks:B}=t.variables[c],L=Yi(f),x=aa(c,a,L,n,B);await i.assign(c,a,f,d,y&&y==="string"?"v2:object":y,x)}return i}async asDataframe(){const t={},e=[];for(const s in this.variables)t[s]={attributes:this.variables[s].attributes,dimensions:this.variables[s].dimensions},t[s].data=await this.variables[s].get(),this.variables[s].arr.dtype=="int64"&&s!=this.coordkeys.t&&e.push(s);const n=Ru(t,{...this.dimensions},[]);if(this.coordkeys.t)for(let s=0;s<n.length;s++)n[s][this.coordkeys.t]=new Date(1e3*n[s][this.coordkeys.t]).toISOString();if(e.length>0)for(const s of e)for(let i=0;i<n.length;i++)n[i][s]=Number(n[i][s]);return n}async asGeojson(t){if(!this.coordkeys.g&&!t)throw new Error("No geometry found");const e=[],n=await this.asDataframe();for(let s=0;s<n.length;s++){const{...i}=n[s];let c=t;if(!c&&this.coordkeys.g){delete i[this.coordkeys.g];const a=n[s][this.coordkeys.g];a.slice(0,7)=='{"type:'?c=JSON.parse(a):c=Cu(a)}e.push({type:"Feature",geometry:c,properties:i})}return{type:"FeatureCollection",features:e}}async assign(t,e,n,s,i,c){const a=Yi(n);if(a.length!=e.length)throw new Error("Data shape does not match dimensions");e.map((B,L)=>{if(this.dimensions[B]){if(this.dimensions[B]!=a[L])throw new Error(`Existing size of dimension ${B} does not match new data`)}else this.dimensions[B]=a[L]});const d=i||op(n),f=await _n(this.root.resolve(t),{shape:a,data_type:d,chunk_shape:c||a,codecs:d=="v2:object"?[{name:"json2"}]:[]});let y=ca(n);y.length==0?y=null:d=="bool"?y=new $n(y):Array.isArray(y)&&d=="float32"?y=Float32Array.from(y,B=>B??NaN):Array.isArray(y)&&d=="float64"?y=Float64Array.from(y,B=>B??NaN):Array.isArray(y)&&d=="int8"?y=Int8Array.from(y):Array.isArray(y)&&d=="int16"?y=Int16Array.from(y):Array.isArray(y)&&d=="int32"?y=Int32Array.from(y):Array.isArray(y)&&d=="int64"?y=BigInt64Array.from(y.map(B=>BigInt(B))):Array.isArray(y)&&d=="uint8"?y=Uint8Array.from(y):Array.isArray(y)&&d=="uint16"?y=Uint16Array.from(y):Array.isArray(y)&&d=="uint32"?y=Uint32Array.from(y):Array.isArray(y)&&d=="uint64"&&(y=BigUint64Array.from(y.map(B=>BigInt(B)))),y&&await oo(f,a.map(()=>null),{data:y,shape:a,stride:ua(a)}),this.variables[t]=new wi(t,e,s||{},f)}async toZarr(t){const e=t?.chunks,n=new Map,s=await _n(n,{attributes:{...this.attributes,_coordinates:JSON.stringify(this.coordkeys)}});for(const i in this.variables){const c=this.variables[i],a=await c.get(),d=Yi(a),f=c.dimensions,y=aa(i,f,d,e,e?void 0:c.arr.chunks),B=c.arr.dtype,L=await _n(s.resolve(i),{shape:d,data_type:B,chunk_shape:y,codecs:B==="v2:object"?[{name:"json2"}]:void 0,attributes:{...c.attributes,_ARRAY_DIMENSIONS:f}});let x=ca(a);x&&x.length>0&&(B==="bool"?x=new $n(x):Array.isArray(x)&&B==="float32"?x=Float32Array.from(x,M=>M??NaN):Array.isArray(x)&&B==="float64"?x=Float64Array.from(x,M=>M??NaN):Array.isArray(x)&&B==="int8"?x=Int8Array.from(x):Array.isArray(x)&&B==="int16"?x=Int16Array.from(x):Array.isArray(x)&&B==="int32"?x=Int32Array.from(x):Array.isArray(x)&&B==="int64"?x=BigInt64Array.from(x.map(M=>BigInt(M))):Array.isArray(x)&&B==="uint8"?x=Uint8Array.from(x):Array.isArray(x)&&B==="uint16"?x=Uint16Array.from(x):Array.isArray(x)&&B==="uint32"?x=Uint32Array.from(x):Array.isArray(x)&&B==="uint64"&&(x=BigUint64Array.from(x.map(M=>BigInt(M)))),await oo(L,d.map(()=>null),{data:x,shape:d,stride:ua(d)}))}return n}}var dp=Object.defineProperty,fp=Object.getOwnPropertyDescriptor,pp=(r,t,e,n)=>{for(var s=fp(t,e),i=r.length-1,c;i>=0;i--)(c=r[i])&&(s=c(t,e,s)||s);return s&&dp(t,e,s),s};const Pu=class ls{id;user;creationTime;endTime;write;verified=!1;_connection;_closePromise=null;_closed=!1;_beforeExitHandler=null;static async acquire(t,e={}){if(!t._isV1){const n=new ls;return n.id="dummy_session",n.user="dummy_user",n.creationTime=new Date,n.endTime=new Date(Date.now()+(e.duration||3600)*1e3),n.write=!1,n.verified=!1,n._connection=t,typeof process<"u"&&process.on&&(n._beforeExitHandler=()=>{n.close()},process.once("beforeExit",n._beforeExitHandler)),n}try{const n={...t._authHeaders};n["Cache-Control"]="no-store";const s=new URLSearchParams({duration:String(e.duration??3600)}),i=await fetch(`${t._gateway}/session/?${s.toString()}`,{headers:n});if(i.status!==200)throw new Error(`Failed to create session: ${await i.text()}`);const c=await i.json(),a=new ls;return a.id=c.id,a.user=c.user,a.creationTime=new Date(c.creation_time),a.endTime=new Date(c.end_time),a.write=c.write,a.verified=c.verified||!1,a._connection=t,typeof process<"u"&&process.on&&(a._beforeExitHandler=()=>{a.close()},process.once("beforeExit",a._beforeExitHandler)),a}catch(n){throw new Error(`Error when acquiring datamesh session: ${n}`)}}get header(){return{"X-DATAMESH-SESSIONID":this.id}}addHeader(t){return{...t,...this.header}}async close(t=!1){if(this._connection._isV1&&!this._closed)return this._closePromise?this._closePromise:(this._closePromise=(async()=>{try{this._beforeExitHandler&&typeof process<"u"&&process.off&&(process.off("beforeExit",this._beforeExitHandler),this._beforeExitHandler=null);const e=await fetch(`${this._connection._gateway}/session/${this.id}`,{method:"DELETE",headers:this.header,body:JSON.stringify({finalise_write:t})});if(e.status===204){this._closed=!0;return}const n=await e.text();if(e.status===404&&n.includes("Session not found")){this._closed=!0;return}if(t)throw new Error(`Failed to finalise write: ${n}`);console.warn(`Failed to close session: ${n}`)}catch(e){if(t)throw new Error(`Error when closing datamesh session: ${e}`);console.warn(`Error when closing datamesh session: ${e}`)}finally{this._closePromise=null}})(),this._closePromise)}async enter(){return this}async exit(t){await this.close(t===void 0)}};pp([Ti],Pu,"acquire");let yp=Pu;var gp=Object.defineProperty,mp=Object.getOwnPropertyDescriptor,$u=(r,t,e,n)=>{for(var s=mp(t,e),i=r.length-1,c;i>=0;i--)(c=r[i])&&(s=c(t,e,s)||s);return s&&gp(t,e,s),s};const wp=typeof process<"u"&&process.env?.DATAMESH_SERVICE?process.env.DATAMESH_SERVICE:"https://datamesh.oceanum.io",Hs=class zu{static LAZY_LOAD_SIZE=1e8;_token;_host;_authHeaders;_gateway;_nocache=!1;_isV1=!1;_sessionParams={};_currentSession=null;service;gateway;constructor(t=typeof process<"u"&&process.env?.DATAMESH_TOKEN?process.env.DATAMESH_TOKEN:"$DATAMESH_TOKEN",e){if(!t&&!e?.jwtAuth)throw new Error("A valid datamesh token must be supplied as a connector constructor argument or defined in environment variables as DATAMESH_TOKEN");this._token=t,this._nocache=e?.nocache??!1;const n=new URL(e?.service||wp);this._host=`${n.protocol}//${n.hostname}`,this._authHeaders=e?.jwtAuth?{Authorization:`Bearer ${e.jwtAuth}`}:{Authorization:`Token ${this._token}`,"X-DATAMESH-TOKEN":this._token},this._gateway=e?.gateway||this._host,this._host.split(".").slice(-1)[0]!==this._gateway.split(".").slice(-1)[0]&&console.warn("Datamesh gateway and service domains do not match"),e?.sessionDuration&&typeof e.sessionDuration=="number"&&(this._sessionParams={duration:e.sessionDuration}),this._checkApiVersion()}async _checkApiVersion(){try{(await fetch(`${this._gateway}/session`,{headers:this._authHeaders})).status===200?(this._isV1=!0,console.info("Using datamesh API version 1")):(this._isV1=!1,console.info("Using datamesh API version 0"))}catch{this._isV1=!1,console.info("Using datamesh API version 0")}}get host(){return this._host}async status(){return(await fetch(this._host,{headers:this._authHeaders})).status===200}async validateResponse(t){if(t.status>=400){let e;try{e=(await t.json()).detail}catch{e=`Datamesh server error: ${await t.text()}`}throw new Error(e)}}async createSession(t={}){const e={duration:t.duration||this._sessionParams.duration||3600};return this._currentSession=await yp.acquire(this,e),this._currentSession}async getSession(){return this._currentSession?this._currentSession:this.createSession()}async getSessionHeaders(t={}){return this._isV1&&!this._currentSession&&await this.createSession(),this._currentSession?this._currentSession.addHeader({...this._authHeaders,...t}):{...this._authHeaders,...t}}async metadataRequest(t="",e={}){const n=new URL(`${this._host}/datasource/${t}`);Object.keys(e).forEach(c=>n.searchParams.append(c,e[c]));const s=await this.getSessionHeaders(),i=await fetch(n.toString(),{headers:s});if(i.status===403)throw new Error(`Datasource ${t} not authorized`);return await this.validateResponse(i),i}async dataRequest(t,e="application/vnd.apache.arrow.file"){const n=await this.getSessionHeaders({Accept:e}),s=await fetch(`${this._gateway}/oceanql/${t}?f=arrow`,{headers:n});return await this.validateResponse(s),Bu(await s.arrayBuffer())}async stageRequest(t){oa()&&console.debug("@oceanum/datamesh debug: stageRequest query",t);const e=JSON.stringify(t),n=await this.getSessionHeaders({"Content-Type":"application/json"}),s=await fetch(`${this._gateway}/oceanql/stage/`,{method:"POST",headers:n,body:e});if(s.status>=400){const i=await s.json();throw new Error(i.detail)}else return s.status===204?null:s.json()}async query(t,e={}){oa()&&console.debug("@oceanum/datamesh debug: query called",t);const n=await this.stageRequest(t);if(!n)return console.warn("No data found for query"),null;if(n.size<zu.LAZY_LOAD_SIZE&&n.container!="dataset"){const d=await this.dataRequest(n.qhash);return await Ye.fromArrow(d,n.coordkeys)}const 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Released state is not on top of the stack.");if(t.type===hs){const n=t;n.size=0,n.array=void 0,n.position=0,n.type=void 0}if(t.type===cn||t.type===Ou){const n=t;n.size=0,n.map=void 0,n.readCount=0,n.type=void 0}this.stackHeadPosition--}reset(){this.stack.length=0,this.stackHeadPosition=-1}}const qr=-1,Gs=new DataView(new ArrayBuffer(0)),Gf=new Uint8Array(Gs.buffer);try{Gs.getInt8(0)}catch(r){if(!(r instanceof RangeError))throw new Error("This module is not supported in the current JavaScript engine because DataView does not throw RangeError on out-of-bounds access")}const ia=new RangeError("Insufficient data"),Yf=new Vf;class Ys{constructor(t){this.totalPos=0,this.pos=0,this.view=Gs,this.bytes=Gf,this.headByte=qr,this.stack=new Zf,this.entered=!1,this.extensionCodec=t?.extensionCodec??us.defaultCodec,this.context=t?.context,this.useBigInt64=t?.useBigInt64??!1,this.rawStrings=t?.rawStrings??!1,this.maxStrLength=t?.maxStrLength??Hr,this.maxBinLength=t?.maxBinLength??Hr,this.maxArrayLength=t?.maxArrayLength??Hr,this.maxMapLength=t?.maxMapLength??Hr,this.maxExtLength=t?.maxExtLength??Hr,this.keyDecoder=t?.keyDecoder!==void 0?t.keyDecoder:Yf,this.mapKeyConverter=t?.mapKeyConverter??Wf}clone(){return new Ys({extensionCodec:this.extensionCodec,context:this.context,useBigInt64:this.useBigInt64,rawStrings:this.rawStrings,maxStrLength:this.maxStrLength,maxBinLength:this.maxBinLength,maxArrayLength:this.maxArrayLength,maxMapLength:this.maxMapLength,maxExtLength:this.maxExtLength,keyDecoder:this.keyDecoder})}reinitializeState(){this.totalPos=0,this.headByte=qr,this.stack.reset()}setBuffer(t){const e=na(t);this.bytes=e,this.view=new DataView(e.buffer,e.byteOffset,e.byteLength),this.pos=0}appendBuffer(t){if(this.headByte===qr&&!this.hasRemaining(1))this.setBuffer(t);else{const e=this.bytes.subarray(this.pos),n=na(t),s=new Uint8Array(e.length+n.length);s.set(e),s.set(n,e.length),this.setBuffer(s)}}hasRemaining(t){return this.view.byteLength-this.pos>=t}createExtraByteError(t){const{view:e,pos:n}=this;return new RangeError(`Extra ${e.byteLength-n} of ${e.byteLength} byte(s) found at buffer[${t}]`)}decode(t){if(this.entered)return this.clone().decode(t);try{this.entered=!0,this.reinitializeState(),this.setBuffer(t);const e=this.doDecodeSync();if(this.hasRemaining(1))throw this.createExtraByteError(this.pos);return e}finally{this.entered=!1}}*decodeMulti(t){if(this.entered){yield*this.clone().decodeMulti(t);return}try{for(this.entered=!0,this.reinitializeState(),this.setBuffer(t);this.hasRemaining(1);)yield this.doDecodeSync()}finally{this.entered=!1}}async decodeAsync(t){if(this.entered)return this.clone().decodeAsync(t);try{this.entered=!0;let e=!1,n;for await(const a of t){if(e)throw this.entered=!1,this.createExtraByteError(this.totalPos);this.appendBuffer(a);try{n=this.doDecodeSync(),e=!0}catch(d){if(!(d instanceof RangeError))throw d}this.totalPos+=this.pos}if(e){if(this.hasRemaining(1))throw this.createExtraByteError(this.totalPos);return n}const{headByte:s,pos:i,totalPos:c}=this;throw new RangeError(`Insufficient data in parsing ${Zi(s)} at ${c} (${i} in the current buffer)`)}finally{this.entered=!1}}decodeArrayStream(t){return this.decodeMultiAsync(t,!0)}decodeStream(t){return this.decodeMultiAsync(t,!1)}async*decodeMultiAsync(t,e){if(this.entered){yield*this.clone().decodeMultiAsync(t,e);return}try{this.entered=!0;let n=e,s=-1;for await(const i of t){if(e&&s===0)throw this.createExtraByteError(this.totalPos);this.appendBuffer(i),n&&(s=this.readArraySize(),n=!1,this.complete());try{for(;yield this.doDecodeSync(),--s!==0;);}catch(c){if(!(c instanceof RangeError))throw c}this.totalPos+=this.pos}}finally{this.entered=!1}}doDecodeSync(){t:for(;;){const t=this.readHeadByte();let e;if(t>=224)e=t-256;else if(t<192)if(t<128)e=t;else if(t<144){const s=t-128;if(s!==0){this.pushMapState(s),this.complete();continue t}else e={}}else if(t<160){const s=t-144;if(s!==0){this.pushArrayState(s),this.complete();continue t}else e=[]}else{const s=t-160;e=this.decodeString(s,0)}else if(t===192)e=null;else if(t===194)e=!1;else if(t===195)e=!0;else if(t===202)e=this.readF32();else if(t===203)e=this.readF64();else if(t===204)e=this.readU8();else if(t===205)e=this.readU16();else if(t===206)e=this.readU32();else if(t===207)this.useBigInt64?e=this.readU64AsBigInt():e=this.readU64();else if(t===208)e=this.readI8();else if(t===209)e=this.readI16();else if(t===210)e=this.readI32();else if(t===211)this.useBigInt64?e=this.readI64AsBigInt():e=this.readI64();else if(t===217){const s=this.lookU8();e=this.decodeString(s,1)}else if(t===218){const s=this.lookU16();e=this.decodeString(s,2)}else if(t===219){const s=this.lookU32();e=this.decodeString(s,4)}else if(t===220){const s=this.readU16();if(s!==0){this.pushArrayState(s),this.complete();continue t}else e=[]}else if(t===221){const s=this.readU32();if(s!==0){this.pushArrayState(s),this.complete();continue t}else e=[]}else if(t===222){const s=this.readU16();if(s!==0){this.pushMapState(s),this.complete();continue t}else e={}}else if(t===223){const s=this.readU32();if(s!==0){this.pushMapState(s),this.complete();continue t}else e={}}else if(t===196){const s=this.lookU8();e=this.decodeBinary(s,1)}else if(t===197){const s=this.lookU16();e=this.decodeBinary(s,2)}else if(t===198){const s=this.lookU32();e=this.decodeBinary(s,4)}else if(t===212)e=this.decodeExtension(1,0);else if(t===213)e=this.decodeExtension(2,0);else if(t===214)e=this.decodeExtension(4,0);else if(t===215)e=this.decodeExtension(8,0);else if(t===216)e=this.decodeExtension(16,0);else if(t===199){const s=this.lookU8();e=this.decodeExtension(s,1)}else if(t===200){const s=this.lookU16();e=this.decodeExtension(s,2)}else if(t===201){const s=this.lookU32();e=this.decodeExtension(s,4)}else throw new se(`Unrecognized type byte: ${Zi(t)}`);this.complete();const n=this.stack;for(;n.length>0;){const s=n.top();if(s.type===hs)if(s.array[s.position]=e,s.position++,s.position===s.size)e=s.array,n.release(s);else continue t;else if(s.type===cn){if(e==="__proto__")throw new se("The key __proto__ is not allowed");s.key=this.mapKeyConverter(e),s.type=Ou;continue t}else if(s.map[s.key]=e,s.readCount++,s.readCount===s.size)e=s.map,n.release(s);else{s.key=null,s.type=cn;continue t}}return e}}readHeadByte(){return this.headByte===qr&&(this.headByte=this.readU8()),this.headByte}complete(){this.headByte=qr}readArraySize(){const t=this.readHeadByte();switch(t){case 220:return this.readU16();case 221:return this.readU32();default:{if(t<160)return t-144;throw new se(`Unrecognized array type byte: 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this.pos+=8,t}readI64(){const t=Fu(this.view,this.pos);return this.pos+=8,t}readU64AsBigInt(){const t=this.view.getBigUint64(this.pos);return this.pos+=8,t}readI64AsBigInt(){const t=this.view.getBigInt64(this.pos);return this.pos+=8,t}readF32(){const t=this.view.getFloat32(this.pos);return this.pos+=4,t}readF64(){const t=this.view.getFloat64(this.pos);return this.pos+=8,t}}function Jf(r,t){return new Ys(t).decode(r)}ya.set("msgpack2",async()=>({kind:"array_to_bytes",fromConfig:(r,t)=>({kind:"array_to_bytes",async encode(e){throw new Error("msgpack2 encode not implemented")},async decode(e){const n=Jf(e),{shape:s}=t,i=new Array(s.length);let c=1;for(let a=s.length-1;a>=0;a--)i[a]=c,c*=s[a];return{data:n,shape:s,stride:i}}})}));function Hf(r){return new Promise(t=>setTimeout(t,r))}const Gi="__cache_created_at";class qf{cache;url;params;cache_prefix;fetchOptions;timeout;ttl;_pending={};_cacheValid;constructor(t,e,n={}){const 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setCacheTimestamp(){if(!this.cache||!this.ttl)return;const t=`${this.cache_prefix}${Gi}`;await Vi(t,this.cache)||await ea(t,Date.now(),this.cache)}async invalidateCache(){if(!this.cache)return;const t=`${this.cache_prefix}${Gi}`;await xn(t,this.cache),this._cacheValid=!1}async get(t,e,n=0){const s=`${this.cache_prefix}${t}`;let i=null;if(this.cache&&(await this.checkCacheTTL()?i=await Vi(s,this.cache):await this.invalidateCache(),i&&delete this._pending[s],this._pending[s]))if(await Hf(200),n>this.timeout){await xn(s,this.cache),delete this._pending[s],console.error("Zarr timeout");return}else return await this.get(t,e,n+200);if(!i){this._pending[s]=!0;try{const c={...this.fetchOptions,...e,headers:{...this.fetchOptions.headers||{},...e?.headers||{}},signal:AbortSignal.timeout(this.timeout)},a=new URLSearchParams(this.params).toString(),d=await fetch(`${this.url}${t}?${a}`,c);if(d.status===404){this.cache&&await xn(s,this.cache);return}if(d.status>=400)throw new Error(`HTTP error: 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s={zarr_format:3,node_type:"array",shape:e.shape,data_type:"int64",chunk_grid:{name:"regular",configuration:{chunk_shape:e.chunks}},chunk_key_encoding:{name:"v2",configuration:{separator:e.dimension_separator??"."}},codecs:n,fill_value:e.fill_value,attributes:t};return new vr(r.store,r.path,s)}let ku=typeof process<"u"&&!!process.env&&process.env.DATAMESH_DEBUG==="true";function oa(){return ku}function Ti(r,t,e){if(!ku)return e;const n=e.value;return e.value=function(...s){const i=s.map(a=>{if(!a||typeof a!="object")return a;try{return JSON.parse(JSON.stringify(a,(d,f)=>{if(typeof d=="string"){const y=d.toLowerCase();if(y.includes("token")||y.includes("authorization")||y.includes("jwt"))return"[redacted]"}return f}))}catch{return"[unserializable]"}}),c=Date.now();try{const a=n.apply(this,s);if(a&&typeof a.then=="function")return a.finally(()=>{const f=Date.now()-c;console.debug(`@oceanum/datamesh debug: ${t} took ${f}ms`,i)});const d=Date.now()-c;return console.debug(`@oceanum/datamesh 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e};class wi{id;dimensions;attributes;arr;constructor(t,e,n,s){this.id=t,this.dimensions=e,this.attributes=n,this.arr=s}async get(t){if(this.arr.shape.length==0||this.arr.shape[0]==0)return[];const e=t&&t.map(s=>{if(typeof s=="string"){const[i,c,a]=s.split(":");return Hi(parseInt(i),parseInt(c),parseInt(a))}else return s}),n=await Uh(this.arr,e);if(this.arr.dtype=="v2:object"||!n.shape)return n.data;if(this.arr.dtype=="bool")return[...n.data];{const s=this.arr.attrs,i=this.arr.dtype,c=s._dtype;if(c?.startsWith("<M8"))return cp(n,c);if(Uu(s)){const f=s.units,y=s.calendar||"standard";return up(n,f,y)}const a=this.attributes._fill_value,d=a?lp(n.data,a,i):n.data;return pn(d,n.shape,n.stride)}}}sp([Ti],wi.prototype,"get");class Ye{dimensions;variables;attributes;coordkeys;root;constructor(t,e,n,s,i){this.dimensions=t,this.variables=e,this.attributes=n,this.coordkeys=s,this.root=i}static async zarr(t,e,n={}){const s=new qf(t,e,{chunks:n.chunks,downsample:n.downsample,parameters:n.parameters,timeout:n.timeout,nocache:n.nocache,ttl:n.ttl}),i=await mh(s),c=await Ge(i,{kind:"group"}),a={},d={};for(const y of i.contents())if(y.kind=="array"){let B;try{B=await Ge(c.resolve(y.path),{kind:"array"})}catch(U){const F=typeof U=="object"&&U&&"message"in U?String(U.message):void 0;if(F&&F.includes("<M8"))B=await Kf(c.resolve(y.path));else throw U}const L={...B.attrs};if(L._fill_value===void 0){const U=`${y.path}/.zarray`.replace(/^\//,""),F=await i.get(`/${U}`);if(F){const O=JSON.parse(new TextDecoder().decode(F));O.fill_value!==void 0&&(L._fill_value=O.fill_value)}}const x=L._ARRAY_DIMENSIONS,M=y.path.split("/").pop();a[M]=new wi(M,x||[],L,B),x&&x.map((U,F)=>{const O=B.shape[F];if(d[U]&&d[U]!=O)throw new Error(`Inconsistent dimension size for ${U}: ${d[U]} != ${O}`);d[U]=O})}const f=JSON.parse(c.attrs._coordinates||"{}")||{};return new Ye(d,a,c.attrs,n.coordkeys||f,c)}static async fromArrow(t,e){const n={},s={record:t.numRows},i={};return t.schema.fields.forEach(c=>{const a=t.getChild(c.name);let d={},f=a?.toArray(),y=ap(c.type);if(tt.isTimestamp(c.type)){const B=new Float64Array(f.length),L=BigInt(1e3**(c.type.unit-0));for(let x=0;x<f.length;x++)B[x]=Number(f[x]/L);f=B,y="float64",d={unit:"Unix timestamp (s)"}}else if(tt.isBinary(c.type)){const B=[];for(let L=0;L<f.length;L++)B.push(new Tu.Buffer(f[L]).toString("base64"));f=B,y="v2:object"}i[c.name]={dimensions:["record"],attributes:d,data:f,dtype:y}}),await Ye.init({dimensions:s,variables:i,attributes:n},e)}static async fromGeojson(t,e){if(!("features"in t&&Array.isArray(t.features))&&!("geometry"in t))throw new Error("Invalid GeoJSON");const n="features"in t&&t.features?t.features:[t];if(n.length===0)throw new Error("FeatureCollection contains no features");const s=new Set;n.forEach(d=>{d.properties&&Object.keys(d.properties).forEach(f=>s.add(f))});const i=n.map(d=>{const f={geometry:d.geometry};return d.properties&&Object.assign(f,d.properties),f}),c={dimensions:{index:i.length},variables:{},attributes:{}},a=await Ye.init(c,{...e,g:"geometry"});await a.assign("geometry",["index"],i.map(d=>d.geometry),{description:"GeoJSON geometry"});for(const d of s){const f=i.map(y=>y[d]);await a.assign(d,["index"],f,{description:`Property: ${d}`})}return a}static async init(t,e,n){const s=await _n(new Map,{attributes:{created:new Date}}),i=new Ye(t.dimensions,{},t.attributes||{},e||{},s);for(const c in t.variables){const{dimensions:a,attributes:d,data:f,dtype:y,chunks:B}=t.variables[c],L=Yi(f),x=aa(c,a,L,n,B);await i.assign(c,a,f,d,y&&y==="string"?"v2:object":y,x)}return i}async asDataframe(){const t={},e=[];for(const s in this.variables)t[s]={attributes:this.variables[s].attributes,dimensions:this.variables[s].dimensions},t[s].data=await this.variables[s].get(),this.variables[s].arr.dtype=="int64"&&s!=this.coordkeys.t&&e.push(s);const n=Ru(t,{...this.dimensions},[]);if(this.coordkeys.t)for(let s=0;s<n.length;s++)n[s][this.coordkeys.t]=new Date(1e3*n[s][this.coordkeys.t]).toISOString();if(e.length>0)for(const s of e)for(let i=0;i<n.length;i++)n[i][s]=Number(n[i][s]);return n}async asGeojson(t){if(!this.coordkeys.g&&!t)throw new Error("No geometry found");const e=[],n=await this.asDataframe();for(let s=0;s<n.length;s++){const{...i}=n[s];let c=t;if(!c&&this.coordkeys.g){delete i[this.coordkeys.g];const a=n[s][this.coordkeys.g];a.slice(0,7)=='{"type:'?c=JSON.parse(a):c=Cu(a)}e.push({type:"Feature",geometry:c,properties:i})}return{type:"FeatureCollection",features:e}}async assign(t,e,n,s,i,c){const a=Yi(n);if(a.length!=e.length)throw new Error("Data shape does not match dimensions");e.map((B,L)=>{if(this.dimensions[B]){if(this.dimensions[B]!=a[L])throw new Error(`Existing size of dimension ${B} does not match new data`)}else this.dimensions[B]=a[L]});const d=i||op(n),f=await _n(this.root.resolve(t),{shape:a,data_type:d,chunk_shape:c||a,codecs:d=="v2:object"?[{name:"json2"}]:[]});let y=ca(n);y.length==0?y=null:d=="bool"?y=new $n(y):Array.isArray(y)&&d=="float32"?y=Float32Array.from(y,B=>B??NaN):Array.isArray(y)&&d=="float64"?y=Float64Array.from(y,B=>B??NaN):Array.isArray(y)&&d=="int8"?y=Int8Array.from(y):Array.isArray(y)&&d=="int16"?y=Int16Array.from(y):Array.isArray(y)&&d=="int32"?y=Int32Array.from(y):Array.isArray(y)&&d=="int64"?y=BigInt64Array.from(y.map(B=>BigInt(B))):Array.isArray(y)&&d=="uint8"?y=Uint8Array.from(y):Array.isArray(y)&&d=="uint16"?y=Uint16Array.from(y):Array.isArray(y)&&d=="uint32"?y=Uint32Array.from(y):Array.isArray(y)&&d=="uint64"&&(y=BigUint64Array.from(y.map(B=>BigInt(B)))),y&&await oo(f,a.map(()=>null),{data:y,shape:a,stride:ua(a)}),this.variables[t]=new wi(t,e,s||{},f)}async toZarr(t){const e=t?.chunks,n=new Map,s=await _n(n,{attributes:{...this.attributes,_coordinates:JSON.stringify(this.coordkeys)}});for(const i in this.variables){const c=this.variables[i],a=await c.get(),d=Yi(a),f=c.dimensions,y=aa(i,f,d,e,e?void 0:c.arr.chunks),B=c.arr.dtype,L=await _n(s.resolve(i),{shape:d,data_type:B,chunk_shape:y,codecs:B==="v2:object"?[{name:"json2"}]:void 0,attributes:{...c.attributes,_ARRAY_DIMENSIONS:f}});let x=ca(a);x&&x.length>0&&(B==="bool"?x=new $n(x):Array.isArray(x)&&B==="float32"?x=Float32Array.from(x,M=>M??NaN):Array.isArray(x)&&B==="float64"?x=Float64Array.from(x,M=>M??NaN):Array.isArray(x)&&B==="int8"?x=Int8Array.from(x):Array.isArray(x)&&B==="int16"?x=Int16Array.from(x):Array.isArray(x)&&B==="int32"?x=Int32Array.from(x):Array.isArray(x)&&B==="int64"?x=BigInt64Array.from(x.map(M=>BigInt(M))):Array.isArray(x)&&B==="uint8"?x=Uint8Array.from(x):Array.isArray(x)&&B==="uint16"?x=Uint16Array.from(x):Array.isArray(x)&&B==="uint32"?x=Uint32Array.from(x):Array.isArray(x)&&B==="uint64"&&(x=BigUint64Array.from(x.map(M=>BigInt(M)))),await oo(L,d.map(()=>null),{data:x,shape:d,stride:ua(d)}))}return n}}var dp=Object.defineProperty,fp=Object.getOwnPropertyDescriptor,pp=(r,t,e,n)=>{for(var s=fp(t,e),i=r.length-1,c;i>=0;i--)(c=r[i])&&(s=c(t,e,s)||s);return s&&dp(t,e,s),s};const Pu=class ls{id;user;creationTime;endTime;write;verified=!1;_connection;_closePromise=null;_closed=!1;_beforeExitHandler=null;static async acquire(t,e={}){if(!t._isV1){const n=new ls;return n.id="dummy_session",n.user="dummy_user",n.creationTime=new Date,n.endTime=new Date(Date.now()+(e.duration||3600)*1e3),n.write=!1,n.verified=!1,n._connection=t,typeof process<"u"&&process.on&&(n._beforeExitHandler=()=>{n.close()},process.once("beforeExit",n._beforeExitHandler)),n}try{const n={...t._authHeaders};n["Cache-Control"]="no-store";const s=new URLSearchParams({duration:String(e.duration??3600)}),i=await fetch(`${t._gateway}/session/?${s.toString()}`,{headers:n});if(i.status!==200)throw new Error(`Failed to create session: ${await i.text()}`);const c=await i.json(),a=new ls;return a.id=c.id,a.user=c.user,a.creationTime=new Date(c.creation_time),a.endTime=new Date(c.end_time),a.write=c.write,a.verified=c.verified||!1,a._connection=t,typeof process<"u"&&process.on&&(a._beforeExitHandler=()=>{a.close()},process.once("beforeExit",a._beforeExitHandler)),a}catch(n){throw new Error(`Error when acquiring datamesh session: ${n}`)}}get header(){return{"X-DATAMESH-SESSIONID":this.id}}addHeader(t){return{...t,...this.header}}async close(t=!1){if(this._connection._isV1&&!this._closed)return this._closePromise?this._closePromise:(this._closePromise=(async()=>{try{this._beforeExitHandler&&typeof process<"u"&&process.off&&(process.off("beforeExit",this._beforeExitHandler),this._beforeExitHandler=null);const e=await fetch(`${this._connection._gateway}/session/${this.id}`,{method:"DELETE",headers:this.header,body:JSON.stringify({finalise_write:t})});if(e.status===204){this._closed=!0;return}const n=await e.text();if(e.status===404&&n.includes("Session not found")){this._closed=!0;return}if(t)throw new Error(`Failed to finalise write: ${n}`);console.warn(`Failed to close session: ${n}`)}catch(e){if(t)throw new Error(`Error when closing datamesh session: ${e}`);console.warn(`Error when closing datamesh session: ${e}`)}finally{this._closePromise=null}})(),this._closePromise)}async enter(){return this}async exit(t){await this.close(t===void 0)}};pp([Ti],Pu,"acquire");let yp=Pu;var gp=Object.defineProperty,mp=Object.getOwnPropertyDescriptor,$u=(r,t,e,n)=>{for(var s=mp(t,e),i=r.length-1,c;i>=0;i--)(c=r[i])&&(s=c(t,e,s)||s);return s&&gp(t,e,s),s};const wp=typeof process<"u"&&process.env?.DATAMESH_SERVICE?process.env.DATAMESH_SERVICE:"https://datamesh.oceanum.io",Hs=class zu{static LAZY_LOAD_SIZE=1e8;_token;_host;_authHeaders;_gateway;_nocache=!1;_isV1=!0;_sessionParams={};_currentSession=null;service;gateway;constructor(t=typeof process<"u"&&process.env?.DATAMESH_TOKEN?process.env.DATAMESH_TOKEN:"$DATAMESH_TOKEN",e){if(!t&&!e?.jwtAuth)throw new Error("A valid datamesh token must be supplied as a connector constructor argument or defined in environment variables as DATAMESH_TOKEN");this._token=t,this._nocache=e?.nocache??!1;const n=new URL(e?.service||wp);this._host=`${n.protocol}//${n.hostname}`,this._authHeaders=e?.jwtAuth?{Authorization:`Bearer ${e.jwtAuth}`}:{Authorization:`Token ${this._token}`,"X-DATAMESH-TOKEN":this._token},this._gateway=e?.gateway||this._host,this._host.split(".").slice(-1)[0]!==this._gateway.split(".").slice(-1)[0]&&console.warn("Datamesh gateway and service domains do not match"),e?.sessionDuration&&typeof e.sessionDuration=="number"&&(this._sessionParams={duration:e.sessionDuration}),this._checkApiVersion()}async _checkApiVersion(){try{(await fetch(`${this._gateway}/session`,{headers:this._authHeaders})).status===200?(this._isV1=!0,console.info("Using datamesh API version 1")):(this._isV1=!1,console.info("Using datamesh API version 0"))}catch{this._isV1=!1,console.info("Using datamesh API version 0")}}get host(){return this._host}async status(){return(await fetch(this._host,{headers:this._authHeaders})).status===200}async validateResponse(t){if(t.status>=400){let e;try{e=(await t.json()).detail}catch{e=`Datamesh server error: ${await t.text()}`}throw new Error(e)}}async createSession(t={}){const e={duration:t.duration||this._sessionParams.duration||3600};return this._currentSession=await yp.acquire(this,e),this._currentSession}async getSession(){return this._currentSession?this._currentSession:this.createSession()}async getSessionHeaders(t={}){return this._isV1&&!this._currentSession&&await this.createSession(),this._currentSession?this._currentSession.addHeader({...this._authHeaders,...t}):{...this._authHeaders,...t}}async metadataRequest(t="",e={}){const n=new URL(`${this._host}/datasource/${t}`);Object.keys(e).forEach(c=>n.searchParams.append(c,e[c]));const s=await this.getSessionHeaders(),i=await fetch(n.toString(),{headers:s});if(i.status===403)throw new Error(`Datasource ${t} not authorized`);return await this.validateResponse(i),i}async dataRequest(t,e="application/vnd.apache.arrow.file"){const n=await this.getSessionHeaders({Accept:e}),s=await fetch(`${this._gateway}/oceanql/${t}?f=arrow`,{headers:n});return await this.validateResponse(s),Bu(await s.arrayBuffer())}async stageRequest(t){oa()&&console.debug("@oceanum/datamesh debug: stageRequest query",t);const e=JSON.stringify(t),n=await this.getSessionHeaders({"Content-Type":"application/json"}),s=await fetch(`${this._gateway}/oceanql/stage/`,{method:"POST",headers:n,body:e});if(s.status>=400){const i=await s.json();throw new Error(i.detail)}else return s.status===204?null:s.json()}async query(t,e={}){oa()&&console.debug("@oceanum/datamesh debug: query called",t);const n=await this.stageRequest(t);if(!n)return console.warn("No data found for query"),null;if(n.size<zu.LAZY_LOAD_SIZE&&n.container!="dataset"){const d=await this.dataRequest(n.qhash);return await Ye.fromArrow(d,n.coordkeys)}const 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function(A,N,m){e=m,n=m().$utils(),m.duration=function(v,k){var Q=m.locale();return M(v,{$l:Q},k)},m.isDuration=x;var S=N.prototype.add,w=N.prototype.subtract;N.prototype.add=function(v,k){return x(v)?G(this,v,1):S.bind(this)(v,k)},N.prototype.subtract=function(v,k){return x(v)?G(this,v,-1):w.bind(this)(v,k)}}})}(Pn)),Pn.exports}var xp=vp();const Ap=Vs(xp);mr.extend(Ap);const Ep=r=>{if(r instanceof Date)return mr(r).toISOString();if(r instanceof mr)return r.toISOString();if(r instanceof mr.duration)return r.toISOString();try{return mr.duration(r).toISOString()}catch{return mr(r).toISOString()}},Tp=r=>{const t=r.times.map(e=>Ep(e));return{type:r.type||"range",times:t,resolution:r.resolution,resample:r.resample}};class Mp{datasource;parameters;description;variables;timefilter;geofilter;levelfilter;coordfilter;crs;aggregate;limit;id;constructor(t){this.datasource=t.datasource,this.parameters=t.parameters,this.description=t.description,this.variables=t.variables,this.timefilter=t.timefilter&&Tp(t.timefilter),this.geofilter=t.geofilter,this.levelfilter=t.levelfilter,this.coordfilter=t.coordfilter,this.crs=t.crs,this.aggregate=t.aggregate,this.limit=t.limit,this.id=t.id}toJSON(){return{datasource:this.datasource,parameters:this.parameters,description:this.description,variables:this.variables,timefilter:this.timefilter,geofilter:this.geofilter,levelfilter:this.levelfilter,coordfilter:this.coordfilter,crs:this.crs,aggregate:this.aggregate,limit:this.limit,id:this.id}}}exports.Connector=bp;exports.DataVar=wi;exports.Dataset=Ye;exports.Query=Mp;exports.cftimeToUnixSeconds=Lu;exports.date2num=ep;exports.getSupportedCalendars=rp;exports.hasCFTimeUnits=Uu;exports.isCalendarSupported=Du;exports.num2date=tp;exports.parseCFUnits=Ni;exports.wkb_to_geojson=Cu;

package/dist/index.js

@@ -13244,10 +13244,10 @@ class Gf {
    * Returns true if cache is valid, false if expired.
    */
   async checkCacheTTL() {
-    if (!this.ttl || !this.cache) return !0;
+    if (!this.ttl || !this.cache) return !1;
     if (this._cacheValid !== void 0) return this._cacheValid;
     const t = `${this.cache_prefix}${Wi}`, e = await zi(t, this.cache);
-    return e ? (Date.now() - e) / 1e3 > this.ttl ? (this._cacheValid = !1, !1) : (this._cacheValid = !0, !0) : (this._cacheValid = !0, !0);
+    return e ? (Date.now() - e) / 1e3 > this.ttl ? (this._cacheValid = !1, !1) : (this._cacheValid = !0, !0) : (this._cacheValid = !1, !1);
   }
   /**
    * Set the cache creation timestamp if not already set.
@@ -13264,7 +13264,7 @@ class Gf {
   async invalidateCache() {
     if (!this.cache) return;
     const t = `${this.cache_prefix}${Wi}`;
-    await xn(t, this.cache), this._cacheValid = void 0;
+    await xn(t, this.cache), this._cacheValid = !1;
   }
   async get(t, e, n = 0) {
     const s = `${this.cache_prefix}${t}`;
@@ -13751,7 +13751,7 @@ class Qe {
    * @param options.parameters - Optional parameters for the request.
    * @param options.coordkeys - Optional coordinates for the request.
    * @param options.timeout - Optional timeout for the request.
-   * @param options.nocache - Disable caching
+   * @param options.ttl - Time to live for cache entries in seconds.
    * @returns A promise that resolves to a Dataset instance.
    */
   //@measureTime
@@ -14220,7 +14220,7 @@ const yp = typeof process < "u" && process.env?.DATAMESH_SERVICE ? process.env.D
   _authHeaders;
   _gateway;
   _nocache = !1;
-  _isV1 = !1;
+  _isV1 = !0;
   _sessionParams = {};
   _currentSession = null;
   service;

package/dist/lib/connector.d.ts.map

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package/dist/lib/datamodel.d.ts

@@ -141,7 +141,7 @@ export declare class Dataset<S extends HttpZarr | TempZarr> {
      * @param options.parameters - Optional parameters for the request.
      * @param options.coordkeys - Optional coordinates for the request.
      * @param options.timeout - Optional timeout for the request.
-     * @param options.nocache - Disable caching
+     * @param options.ttl - Time to live for cache entries in seconds.
      * @returns A promise that resolves to a Dataset instance.
      */
     static zarr(url: string, authHeaders: Record<string, string>, options?: ZarrOptions): Promise<Dataset<HttpZarr>>;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@oceanum/datamesh",
-  "version": "0.7.1",
+  "version": "0.7.2",
   "scripts": {
     "build": "vite build",
     "build:docs": "typedoc"