@oceanum/datamesh 0.1.0

package/dist/tsconfig.lib.tsbuildinfo

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package/eslint.config.js

@@ -0,0 +1,22 @@
+const baseConfig = require("../../eslint.config.js");
+
+module.exports = [
+  ...baseConfig,
+  {
+    files: ["**/*.json"],
+    rules: {
+      "@nx/dependency-checks": [
+        "error",
+        {
+          ignoredFiles: [
+            "{projectRoot}/eslint.config.{js,cjs,mjs}",
+            "{projectRoot}/vite.config.{js,ts,mjs,mts}",
+          ],
+        },
+      ],
+    },
+    languageOptions: {
+      parser: require("jsonc-eslint-parser"),
+    },
+  },
+];

package/package.json

@@ -0,0 +1,22 @@
+{
+  "name": "@oceanum/datamesh",
+  "version": "0.1.0",
+  "scripts": {},
+  "publishConfig": {
+    "access": "public"
+  },
+  "dependencies": {
+    "@types/geojson": "^7946.0.14",
+    "@types/object-hash": "^3.0.6",
+    "@zarrita/core": "^0.1.0-next.15",
+    "@zarrita/indexing": "^0.1.0-next.17",
+    "@zarrita/storage": "^0.1.0-next.7",
+    "dayjs": "^1.11.13",
+    "idb-keyval": "^6.2.1",
+    "object-hash": "^3.0.0",
+    "zarrita": "^0.4.0-next.17"
+  },
+  "main": "./dist/index.js",
+  "module": "./dist/index.mjs",
+  "typings": "./dist/index.d.ts"
+}

package/project.json

@@ -0,0 +1,4 @@
+{
+  "name": "datamesh",
+  "$schema": "../../node_modules/nx/schemas/project-schema.json"
+}

package/src/index.ts

@@ -0,0 +1,2 @@
+export * from "./lib/connector";
+export * from "./lib/datasource";

package/src/lib/connector.ts

@@ -0,0 +1,228 @@
+import { Datasource } from "./datasource";
+import { IQuery, Stage } from "./query";
+import { Dataset, DatameshStore } from "./datamodel";
+
+/**
+ * Datamesh connector class.
+ *
+ * All datamesh operations are methods of this class.
+ */
+export class Connector {
+  private _token: string;
+  private _proto: string;
+  private _host: string;
+  private _authHeaders: Record<string, string>;
+  private _gateway: string;
+
+  /**
+   * Datamesh connector constructor
+   *
+   * @param token - Your datamesh access token. Defaults to environment variable DATAMESH_TOKEN is defined else as literal string "DATAMESH_TOKEN". DO NOT put your Datamesh token directly into public facing browser code.
+   * @param service - URL of datamesh service. Defaults to environment variable DATAMESH_SERVICE or "https://datamesh.oceanum.io".
+   * @param gateway - URL of gateway service. Defaults to "https://gateway.datamesh.oceanum.io".
+   *
+   * @throws {Error} - If a valid token is not provided.
+   */
+  constructor(
+    token = process.env.DATAMESH_TOKEN || "$DATAMESH_TOKEN",
+    service = process.env.DATAMESH_SERVICE || "https://datamesh.oceanum.io",
+    gateway = process.env.DATAMESH_GATEWAY ||
+      "https://gateway.datamesh.oceanum.io"
+  ) {
+    if (!token) {
+      throw new Error(
+        "A valid datamesh token must be supplied as a connector constructor argument or defined in environment variables as DATAMESH_TOKEN"
+      );
+    }
+
+    this._token = token;
+    const url = new URL(service);
+    this._proto = url.protocol;
+    this._host = url.hostname;
+    this._authHeaders = {
+      Authorization: `Token ${this._token}`,
+      "X-DATAMESH-TOKEN": this._token,
+    };
+
+    this._gateway = gateway || `${this._proto}//gateway.${this._host}`;
+
+    if (
+      this._host.split(".").slice(-1)[0] !==
+      this._gateway.split(".").slice(-1)[0]
+    ) {
+      console.warn("Gateway and service domain do not match");
+    }
+  }
+
+  /**
+   * Get datamesh host.
+   *
+   * @returns The datamesh server host.
+   */
+  get host(): string {
+    return this._host;
+  }
+
+  /**
+   * Check the status of the metadata server.
+   *
+   * @returns True if the metadata server is up, false otherwise.
+   */
+  async status(): Promise<boolean> {
+    const response = await fetch(`${this._proto}//${this._host}`, {
+      headers: this._authHeaders,
+    });
+    return response.status === 200;
+  }
+
+  /**
+   * Validate response from server.
+   *
+   * @param response - The response object to validate.
+   * @throws {Error} - If the response contains an error status code.
+   */
+  private async validateResponse(response: Response): Promise<void> {
+    if (response.status >= 400) {
+      let message: string;
+      try {
+        const errorJson = await response.json();
+        message = errorJson.detail;
+      } catch {
+        message = `Datamesh server error: ${await response.text()}`;
+      }
+      throw new Error(message);
+    }
+  }
+
+  /**
+   * Request metadata from datamesh.
+   *
+   * @param datasourceId - The ID of the datasource to request.
+   * @param params - Additional parameters for the request.
+   * @returns The response from the server.
+   */
+  private async metadataRequest(
+    datasourceId = "",
+    params = {} as Record<string, string>
+  ): Promise<Response> {
+    const url = new URL(
+      `${this._proto}//${this._host}/datasource/${datasourceId}`
+    );
+    Object.keys(params).forEach((key) =>
+      url.searchParams.append(key, params[key])
+    );
+
+    const response = await fetch(url.toString(), {
+      headers: this._authHeaders,
+    });
+
+    if (response.status === 404) {
+      throw new Error(`Datasource ${datasourceId} not found`);
+    } else if (response.status === 401) {
+      throw new Error(`Datasource ${datasourceId} not authorized`);
+    }
+
+    await this.validateResponse(response);
+    return response;
+  }
+
+  /**
+   * Request data from datamesh.
+   *
+   * @param datasourceId - The ID of the datasource to request.
+   * @param dataFormat - The format of the requested data. Defaults to "application/json".
+   * @returns The path to the cached file.
+   */
+  async dataRequest(
+    datasourceId: string,
+    dataFormat = "application/json"
+  ): Promise<Blob> {
+    const response = await fetch(`${this._gateway}/data/${datasourceId}`, {
+      headers: { Accept: dataFormat, ...this._authHeaders },
+    });
+    await this.validateResponse(response);
+    return response.blob();
+  }
+
+  /**
+   * Stage a query to the datamesh.
+   *
+   * @param query - The query to stage.
+   * @returns The staged response.
+   */
+  private async stageRequest(query: IQuery): Promise<Stage | null> {
+    const data = JSON.stringify(query);
+    const response = await fetch(`${this._gateway}/oceanql/stage/`, {
+      method: "POST",
+      headers: { "Content-Type": "application/json", ...this._authHeaders },
+      body: data,
+    });
+    if (response.status >= 400) {
+      const errorJson = await response.json();
+      throw new Error(errorJson.detail);
+    } else if (response.status === 204) {
+      return null;
+    } else {
+      return response.json();
+    }
+  }
+
+  /**
+   * Execute a query to the datamesh.
+   *
+   * @param query - The query to execute.
+   * @returns The response from the server.
+   */
+  async query(query: IQuery): Promise<Dataset<DatameshStore> | null> {
+    const stage = await this.stageRequest(query);
+    if (!stage) {
+      console.warn("No data found for query");
+      return null;
+    }
+    const url = `${this._gateway}/zarr/${stage.qhash}`;
+    const dataset = await Dataset.zarr(url, this._authHeaders);
+    return dataset;
+  }
+
+  /**
+   * Get a datasource instance from the datamesh.
+   *
+   * @param datasourceId - Unique datasource ID.
+   * @returns The datasource instance.
+   * @throws {Error} - If the datasource cannot be found or is not authorized.
+   */
+  async getDatasource(datasourceId: string): Promise<Datasource> {
+    const meta = await this.metadataRequest(datasourceId);
+    const metaDict = await meta.json();
+    return {
+      id: datasourceId,
+      geom: metaDict.geometry,
+      ...metaDict.properties,
+    };
+  }
+
+  /**
+   * Load a datasource into the work environment.
+   *
+   * @param datasourceId - Unique datasource ID.
+   * @param parameters - Additional datasource parameters.
+   * @param useDask - Whether to use Dask for loading. Defaults to false.
+   * @returns The datasource container.
+   */
+  async loadDatasource(
+    datasourceId: string,
+    parameters: Record<string, string | number> = {}
+  ): Promise<Dataset<DatameshStore> | null> {
+    const query = { datasource: datasourceId, parameters };
+    const stage = await this.stageRequest(query);
+    if (!stage) {
+      console.warn("No data found for query");
+      return null;
+    }
+    const dataset = await Dataset.zarr(
+      `${this._gateway}/zarr/${stage.qhash}`,
+      this._authHeaders
+    );
+    return dataset;
+  }
+}