@nxuss/lemma 1.17.0 → 1.18.0

package/dist/esm/subconscious/TheBrainV2.d.ts

@@ -9,6 +9,7 @@
  * Compatible with: Claude CLI, Codex, OpenCode, Cursor, Windsurf, Kiro,
  *                  Cline, VS Code Copilot — any MCP client.
  */
+import type { Evidence, EvidenceResolver } from '../contracts/evidence';
 export interface BrainEntry {
     id: string;
     query: string;
@@ -138,6 +139,13 @@ export interface BrainStoreOptions {
     skipGitContext?: boolean;
     /** Preserve the original creation time (importBundle). Defaults to now. */
     timestamp?: string;
+    /**
+     * Pre-computed evidence bundle (cloud path). When present, the entry's fileHashes /
+     * symbolHashes / symbolNormalizedHashes come straight from here instead of hashing the
+     * local filesystem — a server with no client filesystem stores exactly what the client
+     * measured. When absent, evidence is computed locally as before (LocalFsResolver).
+     */
+    evidence?: Evidence;
 }
 export interface Claim {
     id: string;
@@ -158,6 +166,8 @@ export interface ClaimFreshness {
     staleFiles?: string[];
     /** Fase D, only set under semanticDiff: symbols whose raw hash changed but only cosmetically. */
     cosmeticChanges?: string[];
+    /** Fail-closed: tracked paths/symbols the resolver could not verify. Never `fresh` when present. */
+    unverifiedFiles?: string[];
 }
 /**
  * Result of a single id passed to `TheBrainV2.verifyByIds`. `id` may be an entry id or a
@@ -167,12 +177,14 @@ export interface ClaimFreshness {
  */
 export interface VerifyMemoryResult {
     id: string;
-    status: 'fresh' | 'stale' | 'unknown';
+    status: 'fresh' | 'stale' | 'unverified' | 'unknown';
     staleFiles?: string[];
     /** Only set when `id` resolved to an entry that itself has per-claim tracking. */
     claimBreakdown?: ClaimFreshness[];
     /** Fase D, only set under semanticDiff: symbols whose raw hash changed but only cosmetically. */
     cosmeticChanges?: string[];
+    /** Fail-closed: tracked paths/symbols the resolver could not verify. Only set on status 'unverified'. */
+    unverifiedFiles?: string[];
     /** See BrainSearchResult.staleCause. Only set on status 'stale'. */
     staleCause?: StaleCause;
     /** Only set alongside staleCause 'branch-changed'. */
@@ -192,6 +204,11 @@ export interface BrainSearchResult {
     timestamp: string;
     fresh: boolean;
     staleFiles?: string[];
+    /**
+     * Only set when !fresh: tracked paths/symbols the resolver could not verify (e.g. a
+     * SuppliedEvidenceResolver that the client left uncovered). Fail-closed — never fresh.
+     */
+    unverifiedFiles?: string[];
     outcome?: 'confirmed' | 'failed';
     claims?: ClaimFreshness[];
     domain?: string;
@@ -233,6 +250,12 @@ export interface BrainSearchOptions {
      * without it still falls back to raw-hash-only (stale), same as with the flag off.
      */
     semanticDiff?: boolean;
+    /**
+     * Evidence seam override. Defaults to LocalFsResolver (local MCP, unchanged behaviour).
+     * Pass a SuppliedEvidenceResolver to verify against client-supplied evidence — a tracked
+     * path the client omitted resolves to null and the result is `unverified`, never fresh.
+     */
+    resolver?: EvidenceResolver;
 }
 export interface BrainStats {
     totalEntries: number;
@@ -373,6 +396,14 @@ export interface BlastRadiusResult {
  * invariant every prior phase of proof-carrying context has kept.
  */
 export declare function findBlastRadius(entries: Map<string, BrainEntry>, filePath: string, symbolName?: string): BlastRadiusResult;
+/** Outcome of a freshness check. `unverifiedFiles.length > 0` ⇒ fail-closed: never `fresh`. */
+export interface FreshnessOutcome {
+    fresh: boolean;
+    staleFiles: string[];
+    /** Tracked paths/symbols the resolver could not verify (returned null) — mapped to `unverified`, never `fresh`. */
+    unverifiedFiles: string[];
+    cosmeticChanges?: string[];
+}
 /**
  * True only if every file/symbol this entry was recorded against still hashes the same,
  * AND (when `derivedFrom` is present and a resolver was passed) every memory this one was
@@ -380,17 +411,21 @@ export declare function findBlastRadius(entries: Map<string, BrainEntry>, filePa
  * also has a tracked symbol is judged by the symbol's hash, not the whole file's — an edit
  * elsewhere in the same file (a different function, an import, a comment) must not
  * invalidate a memory that was only ever about one specific symbol.
+ *
+ * `resolver` is the evidence seam: LocalFsResolver (local MCP, returns 'MISSING' on
+ * unreadable files — behaviour unchanged) or SuppliedEvidenceResolver (cloud, returns
+ * `null` for a tracked path the client omitted). A `null` from the resolver is the
+ * fail-closed signal: the outcome carries that path in `unverifiedFiles` and is never
+ * `fresh`.
  */
-export declare function checkEntryFreshness(entry: BrainEntry, resolveNode?: (id: string) => FreshnessNode | undefined, depth?: number, visited?: Set<string>, semanticDiff?: boolean): {
-    fresh: boolean;
-    staleFiles: string[];
-    cosmeticChanges?: string[];
-};
+export declare function checkEntryFreshness(entry: BrainEntry, resolver: EvidenceResolver, resolveNode?: (id: string) => FreshnessNode | undefined, depth?: number, visited?: Set<string>, semanticDiff?: boolean): FreshnessOutcome;
 /**
  * Same hash-compare as checkEntryFreshness, scoped to one claim's own evidence — a claim
  * with no fileHashes/symbolHashes at all is always fresh (nothing tracked to go stale).
+ * `resolver` is the same evidence seam as checkEntryFreshness; a `null` from it fails
+ * closed to `unverified`, never `fresh`.
  */
-export declare function checkClaimFreshness(claim: Claim, semanticDiff?: boolean): ClaimFreshness;
+export declare function checkClaimFreshness(claim: Claim, resolver: EvidenceResolver, semanticDiff?: boolean): ClaimFreshness;
 export declare class TheBrainV2 {
     private entries;
     private invertedIndex;
@@ -582,6 +617,7 @@ export declare class TheBrainV2 {
      */
     verifyByIds(ids: string[], options?: {
         semanticDiff?: boolean;
+        resolver?: EvidenceResolver;
     }): VerifyMemoryResult[];
     /**
      * What in the Brain would go stale, directly or transitively, if `filePath`/`symbolName`

package/dist/esm/subconscious/TheBrainV2.d.ts.map

@@ -1 +1 @@
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package/dist/esm/subconscious/TheBrainV2.js

@@ -14,8 +14,15 @@ import path from 'path';
 import os from 'os';
 import crypto from 'crypto';
 import { execSync } from 'child_process';
-import { getSymbolSurgicalContext, normalizeForFreshness } from '../utils/SymbolSurgicalContext.js';
-import { EmbeddingSidecar, embeddingsEnabled, semanticRerank } from './BrainEmbeddings.js';
+import { LocalFsResolver } from './freshness/LocalFsResolver';
+import { EmbeddingSidecar, embeddingsEnabled, semanticRerank } from './BrainEmbeddings';
+/**
+ * Default resolver for the local MCP path. Behaviour is byte-for-byte identical to
+ * the pre-refactor inline `fs.readFileSync` hashing — it never returns `null`, so
+ * the verifier's fail-closed branch is never tripped and local freshness results
+ * are unchanged. Injectable via the `resolver` option on search/verifyByIds/refresh.
+ */
+const defaultLocalResolver = new LocalFsResolver();
 // ─── BM25 Constants ───────────────────────────────────────────────────────────
 const BM25_K1 = 1.5; // Term saturation (1.2-2.0)
 const BM25_B = 0.75; // Length normalization (0-1)
@@ -548,12 +555,8 @@ function hashFilesForFreshness(filePaths) {
     const hashes = {};
     for (const p of filePaths) {
         const abs = path.resolve(p);
-        try {
-            hashes[abs] = crypto.createHash('sha256').update(fs.readFileSync(abs, 'utf8')).digest('hex');
-        }
-        catch {
-            hashes[abs] = 'MISSING';
-        }
+        // LocalFsResolver never returns null; ?? 'MISSING' is a defensive safety net only.
+        hashes[abs] = defaultLocalResolver.hashFile(abs) ?? 'MISSING';
     }
     return hashes;
 }
@@ -563,7 +566,7 @@ function hashSymbolsForFreshness(refs) {
     for (const ref of refs) {
         const abs = path.resolve(ref.filePath);
         const key = `${abs}::${ref.symbolName}`;
-        hashes[key] = currentSymbolHashPair(abs, ref.symbolName).raw;
+        hashes[key] = (defaultLocalResolver.hashSymbol(abs, ref.symbolName) ?? { raw: 'MISSING' }).raw;
     }
     return hashes;
 }
@@ -578,21 +581,12 @@ function hashSymbolsNormalizedForFreshness(refs) {
     for (const ref of refs) {
         const abs = path.resolve(ref.filePath);
         const key = `${abs}::${ref.symbolName}`;
-        hashes[key] = currentSymbolHashPair(abs, ref.symbolName).normalized;
+        hashes[key] = (defaultLocalResolver.hashSymbol(abs, ref.symbolName) ?? { normalized: 'MISSING' }).normalized;
     }
     return hashes;
 }
 function currentSymbolHashPair(abs, symbolName) {
-    try {
-        const ctx = getSymbolSurgicalContext(path.dirname(abs), path.basename(abs), symbolName);
-        return {
-            raw: crypto.createHash('sha256').update(ctx.implementation).digest('hex'),
-            normalized: crypto.createHash('sha256').update(normalizeForFreshness(ctx.implementation)).digest('hex'),
-        };
-    }
-    catch {
-        return { raw: 'MISSING', normalized: 'MISSING' };
-    }
+    return defaultLocalResolver.hashSymbol(abs, symbolName) ?? { raw: 'MISSING', normalized: 'MISSING' };
 }
 /**
  * Looks up a `derivedFrom` id against both entries and claims in one pass. `claimIndex`
@@ -756,9 +750,16 @@ export function findBlastRadius(entries, filePath, symbolName) {
  * also has a tracked symbol is judged by the symbol's hash, not the whole file's — an edit
  * elsewhere in the same file (a different function, an import, a comment) must not
  * invalidate a memory that was only ever about one specific symbol.
+ *
+ * `resolver` is the evidence seam: LocalFsResolver (local MCP, returns 'MISSING' on
+ * unreadable files — behaviour unchanged) or SuppliedEvidenceResolver (cloud, returns
+ * `null` for a tracked path the client omitted). A `null` from the resolver is the
+ * fail-closed signal: the outcome carries that path in `unverifiedFiles` and is never
+ * `fresh`.
  */
-export function checkEntryFreshness(entry, resolveNode, depth = 0, visited = new Set(), semanticDiff = false) {
+export function checkEntryFreshness(entry, resolver, resolveNode, depth = 0, visited = new Set(), semanticDiff = false) {
     const staleFiles = [];
+    const unverifiedFiles = [];
     const cosmeticChanges = [];
     const relLabel = (abs) => {
         const rel = path.relative(process.cwd(), abs);
@@ -769,12 +770,10 @@ export function checkEntryFreshness(entry, resolveNode, depth = 0, visited = new
         for (const [abs, storedHash] of Object.entries(entry.fileHashes)) {
             if (symbolCoveredAbsPaths.has(abs))
                 continue;
-            let currentHash;
-            try {
-                currentHash = crypto.createHash('sha256').update(fs.readFileSync(abs, 'utf8')).digest('hex');
-            }
-            catch {
-                currentHash = 'MISSING';
+            const currentHash = resolver.hashFile(abs);
+            if (currentHash === null) {
+                unverifiedFiles.push(relLabel(abs)); // fail-closed: cannot verify ⇒ not fresh
+                continue;
             }
             if (currentHash !== storedHash)
                 staleFiles.push(relLabel(abs));
@@ -786,7 +785,11 @@ export function checkEntryFreshness(entry, resolveNode, depth = 0, visited = new
             const abs = key.substring(0, sep);
             const symbolName = key.substring(sep + 2);
             const label = `${relLabel(abs)}::${symbolName}`;
-            const currentPair = currentSymbolHashPair(abs, symbolName);
+            const currentPair = resolver.hashSymbol(abs, symbolName);
+            if (currentPair === null) {
+                unverifiedFiles.push(label); // fail-closed: cannot verify ⇒ not fresh
+                continue;
+            }
             if (currentPair.raw === storedHash)
                 continue;
             if (semanticDiff) {
@@ -812,14 +815,23 @@ export function checkEntryFreshness(entry, resolveNode, depth = 0, visited = new
             }
             const nextVisited = new Set(visited);
             nextVisited.add(depId);
-            const depFresh = node.kind === 'entry'
-                ? checkEntryFreshness(node.entry, resolveNode, depth + 1, nextVisited, semanticDiff).fresh
-                : checkClaimFreshness(node.claim, semanticDiff).fresh;
-            if (!depFresh)
-                staleFiles.push(`derived:${depId}`);
+            const depOutcome = node.kind === 'entry'
+                ? checkEntryFreshness(node.entry, resolver, resolveNode, depth + 1, nextVisited, semanticDiff)
+                : checkClaimFreshness(node.claim, resolver, semanticDiff);
+            if (!depOutcome.fresh) {
+                if ((depOutcome.unverifiedFiles?.length ?? 0) > 0)
+                    unverifiedFiles.push(`derived:${depId}`);
+                else
+                    staleFiles.push(`derived:${depId}`);
+            }
         }
     }
-    return { fresh: staleFiles.length === 0, staleFiles, ...(cosmeticChanges.length > 0 ? { cosmeticChanges } : {}) };
+    return {
+        fresh: staleFiles.length === 0 && unverifiedFiles.length === 0,
+        staleFiles,
+        unverifiedFiles,
+        ...(cosmeticChanges.length > 0 ? { cosmeticChanges } : {}),
+    };
 }
 /** Builds the persisted `Claim[]` for an entry from the caller-supplied claim inputs. */
 function buildClaims(inputs) {
@@ -836,9 +848,12 @@ function buildClaims(inputs) {
 /**
  * Same hash-compare as checkEntryFreshness, scoped to one claim's own evidence — a claim
  * with no fileHashes/symbolHashes at all is always fresh (nothing tracked to go stale).
+ * `resolver` is the same evidence seam as checkEntryFreshness; a `null` from it fails
+ * closed to `unverified`, never `fresh`.
  */
-export function checkClaimFreshness(claim, semanticDiff = false) {
+export function checkClaimFreshness(claim, resolver, semanticDiff = false) {
     const staleFiles = [];
+    const unverifiedFiles = [];
     const cosmeticChanges = [];
     const relLabel = (abs) => {
         const rel = path.relative(process.cwd(), abs);
@@ -849,12 +864,10 @@ export function checkClaimFreshness(claim, semanticDiff = false) {
         for (const [abs, storedHash] of Object.entries(claim.fileHashes)) {
             if (symbolCoveredAbsPaths.has(abs))
                 continue;
-            let currentHash;
-            try {
-                currentHash = crypto.createHash('sha256').update(fs.readFileSync(abs, 'utf8')).digest('hex');
-            }
-            catch {
-                currentHash = 'MISSING';
+            const currentHash = resolver.hashFile(abs);
+            if (currentHash === null) {
+                unverifiedFiles.push(relLabel(abs));
+                continue;
             }
             if (currentHash !== storedHash)
                 staleFiles.push(relLabel(abs));
@@ -866,7 +879,11 @@ export function checkClaimFreshness(claim, semanticDiff = false) {
             const abs = key.substring(0, sep);
             const symbolName = key.substring(sep + 2);
             const label = `${relLabel(abs)}::${symbolName}`;
-            const currentPair = currentSymbolHashPair(abs, symbolName);
+            const currentPair = resolver.hashSymbol(abs, symbolName);
+            if (currentPair === null) {
+                unverifiedFiles.push(label);
+                continue;
+            }
             if (currentPair.raw === storedHash)
                 continue;
             if (semanticDiff) {
@@ -882,9 +899,10 @@ export function checkClaimFreshness(claim, semanticDiff = false) {
     return {
         id: claim.id,
         text: claim.text,
-        fresh: staleFiles.length === 0,
+        fresh: staleFiles.length === 0 && unverifiedFiles.length === 0,
         ...(staleFiles.length > 0 ? { staleFiles } : {}),
         ...(cosmeticChanges.length > 0 ? { cosmeticChanges } : {}),
+        ...(unverifiedFiles.length > 0 ? { unverifiedFiles } : {}),
     };
 }
 // ─── TheBrainV2 ──────────────────────────────────────────────────────────────
@@ -1172,10 +1190,13 @@ export class TheBrainV2 {
             hits: 0,
             charCount: query.length + response.length,
             projectId,
-            fileHashes: filePaths && filePaths.length > 0 ? hashFilesForFreshness(filePaths) : undefined,
+            fileHashes: options.evidence?.files ??
+                (filePaths && filePaths.length > 0 ? hashFilesForFreshness(filePaths) : undefined),
             outcome,
-            symbolHashes: symbolRefs && symbolRefs.length > 0 ? hashSymbolsForFreshness(symbolRefs) : undefined,
-            symbolNormalizedHashes: symbolRefs && symbolRefs.length > 0 ? hashSymbolsNormalizedForFreshness(symbolRefs) : undefined,
+            symbolHashes: options.evidence?.symbols ??
+                (symbolRefs && symbolRefs.length > 0 ? hashSymbolsForFreshness(symbolRefs) : undefined),
+            symbolNormalizedHashes: options.evidence?.symbolsNormalized ??
+                (symbolRefs && symbolRefs.length > 0 ? hashSymbolsNormalizedForFreshness(symbolRefs) : undefined),
             claims: claimInputs && claimInputs.length > 0 ? buildClaims(claimInputs) : undefined,
             domain,
             derivedFrom: derivedFrom && derivedFrom.length > 0 ? derivedFrom : undefined,
@@ -1348,6 +1369,7 @@ export class TheBrainV2 {
         const claimIndex = buildClaimIndex(this.entries);
         const resolveNode = (id) => resolveFreshnessNode(this.entries, claimIndex, id);
         const semanticDiff = options.semanticDiff === true;
+        const resolver = options.resolver ?? defaultLocalResolver;
         // Resolved once per search, not per stale hit — five stale results would otherwise
         // spawn ten git processes for one query.
         const git = currentGitContext();
@@ -1355,8 +1377,9 @@ export class TheBrainV2 {
             .filter(r => r.similarity >= minSimilarity)
             .slice(0, limit)
             .map(r => {
-            const { fresh, staleFiles, cosmeticChanges } = checkEntryFreshness(r.entry, resolveNode, 0, new Set(), semanticDiff);
-            const claims = r.entry.claims?.map((c) => checkClaimFreshness(c, semanticDiff));
+            const { fresh, staleFiles, unverifiedFiles, cosmeticChanges } = checkEntryFreshness(r.entry, resolver, resolveNode, 0, new Set(), semanticDiff);
+            const claims = r.entry.claims?.map((c) => checkClaimFreshness(c, resolver, semanticDiff));
+            const unverified = unverifiedFiles.length > 0;
             return {
                 id: r.entry.id,
                 query: r.entry.query,
@@ -1365,7 +1388,8 @@ export class TheBrainV2 {
                 provider: r.entry.provider,
                 timestamp: r.entry.timestamp,
                 fresh,
-                ...(fresh ? {} : { staleFiles, ...attributeStaleness(r.entry, git) }),
+                ...(fresh ? {} : { staleFiles, ...(unverified ? {} : attributeStaleness(r.entry, git)) }),
+                ...(unverifiedFiles.length > 0 ? { unverifiedFiles } : {}),
                 ...(r.entry.outcome ? { outcome: r.entry.outcome } : {}),
                 ...(claims && claims.length > 0 ? { claims } : {}),
                 ...(r.entry.domain ? { domain: r.entry.domain } : {}),
@@ -1621,7 +1645,7 @@ export class TheBrainV2 {
             entry.gitBranch = git.branch;
         entry.refreshedAt = new Date().toISOString();
         const claimIndex = buildClaimIndex(this.entries);
-        const { fresh, staleFiles } = checkEntryFreshness(entry, (depId) => resolveFreshnessNode(this.entries, claimIndex, depId));
+        const { fresh, staleFiles } = checkEntryFreshness(entry, defaultLocalResolver, (depId) => resolveFreshnessNode(this.entries, claimIndex, depId));
         this.scheduleSave();
         return {
             ok: true,
@@ -1650,27 +1674,32 @@ export class TheBrainV2 {
         const claimIndex = buildClaimIndex(this.entries);
         const resolveNode = (id) => resolveFreshnessNode(this.entries, claimIndex, id);
         const semanticDiff = options.semanticDiff === true;
+        const resolver = options.resolver ?? defaultLocalResolver;
         const git = currentGitContext();
         return ids.map((id) => {
             const entry = this.entries.get(id);
             if (entry) {
-                const { fresh, staleFiles, cosmeticChanges } = checkEntryFreshness(entry, resolveNode, 0, new Set(), semanticDiff);
+                const { fresh, staleFiles, unverifiedFiles, cosmeticChanges } = checkEntryFreshness(entry, resolver, resolveNode, 0, new Set(), semanticDiff);
+                const unverified = unverifiedFiles.length > 0;
                 return {
                     id,
-                    status: fresh ? 'fresh' : 'stale',
-                    ...(fresh ? {} : attributeStaleness(entry, git)),
+                    status: unverified ? 'unverified' : fresh ? 'fresh' : 'stale',
+                    ...(unverified || fresh ? {} : attributeStaleness(entry, git)),
                     ...(staleFiles.length > 0 ? { staleFiles } : {}),
-                    ...(entry.claims ? { claimBreakdown: entry.claims.map((c) => checkClaimFreshness(c, semanticDiff)) } : {}),
+                    ...(unverified ? { unverifiedFiles } : {}),
+                    ...(entry.claims ? { claimBreakdown: entry.claims.map((c) => checkClaimFreshness(c, resolver, semanticDiff)) } : {}),
                     ...(cosmeticChanges && cosmeticChanges.length > 0 ? { cosmeticChanges } : {}),
                 };
             }
             const claim = claimIndex.get(id);
             if (claim) {
-                const cf = checkClaimFreshness(claim, semanticDiff);
+                const cf = checkClaimFreshness(claim, resolver, semanticDiff);
+                const unverified = (cf.unverifiedFiles?.length ?? 0) > 0;
                 return {
                     id,
-                    status: cf.fresh ? 'fresh' : 'stale',
+                    status: cf.fresh ? 'fresh' : unverified ? 'unverified' : 'stale',
                     ...(cf.staleFiles ? { staleFiles: cf.staleFiles } : {}),
+                    ...(cf.unverifiedFiles ? { unverifiedFiles: cf.unverifiedFiles } : {}),
                     ...(cf.cosmeticChanges ? { cosmeticChanges: cf.cosmeticChanges } : {}),
                 };
             }
@@ -1710,7 +1739,7 @@ export class TheBrainV2 {
                 continue;
             if (opts.domain && entry.domain !== opts.domain)
                 continue;
-            if (!opts.includeStale && !checkEntryFreshness(entry, resolveNode).fresh) {
+            if (!opts.includeStale && !checkEntryFreshness(entry, defaultLocalResolver, resolveNode).fresh) {
                 skippedStale++;
                 continue;
             }
@@ -1886,7 +1915,7 @@ export class TheBrainV2 {
                 if (!tracksSomething)
                     continue; // untracked entries are fresh by definition, not evidence
                 tracked++;
-                if (!checkEntryFreshness(entry, resolveNode).fresh)
+                if (!checkEntryFreshness(entry, defaultLocalResolver, resolveNode).fresh)
                     stale++;
             }
             base.staleEntries = stale;