@nxuss/lemma 1.16.0 → 1.17.0

package/dist/cjs/mcp/utils.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"utils.d.ts","sourceRoot":"","sources":["../../../src/mcp/utils.ts"],"names":[],"mappings":"AAMA,wBAAgB,YAAY,IAAI,MAAM,CAYrC;AAED,wBAAgB,mBAAmB,IAAI,IAAI,CAE1C;AAED,wBAAgB,eAAe,CAAC,aAAa,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,YAAY,EAAE,MAAM,CAAA;CAAE,CAmCnH;AAED,wBAAgB,sBAAsB,CAAC,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC,CAcrF;AAED,wBAAgB,wBAAwB,CAAC,MAAM,EAAE,GAAG,GAAG,MAAM,CAK5D;AAED,wBAAgB,QAAQ,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,GAAG,IAAI,CAG9D;AAED,wBAAgB,OAAO,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,IAAI,CAE9D;AAuCD;;;GAGG;AACH,wBAAgB,mBAAmB,IAAI,MAAM,EAAE,CAgB9C;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,MAAM,GAAG;IAAE,OAAO,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAE,CAUvF"}

package/dist/cjs/mcp/utils.js

@@ -37,10 +37,29 @@ function clearProxyPortCache() {
 function safeResolvePath(workspaceRoot, filePath) {
     const resolved = path_1.default.resolve(workspaceRoot, filePath);
     let realRoot;
-    let realResolved;
     try {
         realRoot = fs_1.default.realpathSync(workspaceRoot);
-        realResolved = fs_1.default.realpathSync(resolved);
+    }
+    catch (err) {
+        throw new Error(`Access denied: cannot resolve path '${filePath}'`);
+    }
+    // `resolved` may not exist yet (e.g. a file about to be created), and fs.realpathSync
+    // throws ENOENT on any nonexistent path. Walk up to the nearest existing ancestor,
+    // resolve *that* for symlinks, then re-append the remaining (not-yet-real) segments.
+    let existingAncestor = resolved;
+    const remainingSegments = [];
+    while (!fs_1.default.existsSync(existingAncestor)) {
+        const parent = path_1.default.dirname(existingAncestor);
+        if (parent === existingAncestor) {
+            throw new Error(`Access denied: cannot resolve path '${filePath}'`);
+        }
+        remainingSegments.unshift(path_1.default.basename(existingAncestor));
+        existingAncestor = parent;
+    }
+    let realResolved;
+    try {
+        const realAncestor = fs_1.default.realpathSync(existingAncestor);
+        realResolved = remainingSegments.length > 0 ? path_1.default.join(realAncestor, ...remainingSegments) : realAncestor;
     }
     catch (err) {
         throw new Error(`Access denied: cannot resolve path '${filePath}'`);

package/dist/cjs/mcp/utils.js.map

@@ -1 +1 @@
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package/dist/cjs/pr-review/bridge/BrainBridge.js

@@ -53,7 +53,7 @@ class BrainBridge {
                 files,
                 summary: findings.map(f => `[${f.severity}] ${f.filePath}:${f.line || "?"} — ${f.message}`),
             });
-            (0, TheBrainV2_1.getBrain)().store(query, response, "pr-review", 0.92, undefined, (0, TheBrainV2_1.deriveProjectId)());
+            (0, TheBrainV2_1.getBrain)().store(query, response, "pr-review", 0.92, undefined, (0, TheBrainV2_1.deriveProjectId)(), undefined, undefined, undefined, undefined, undefined, { source: "auto-pr-review" });
             return true;
         }
         catch {

package/dist/cjs/pr-review/bridge/BrainBridge.js.map

@@ -1 +1 @@
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package/dist/cjs/subconscious/BrainEmbeddings.d.ts

@@ -0,0 +1,59 @@
+/**
+ * Optional semantic re-ranking for The Brain.
+ *
+ * TheBrainV2 retrieves lexically: BM25 over an inverted index, Jaccard re-rank, plus a
+ * hand-written table of bilingual synonym clusters. That table is the tell — it exists
+ * because a memory stored as "race condition al flushear el índice invertido" is invisible
+ * to a search for "why do memories disappear", and every new vocabulary gap needs another
+ * hand-written cluster. Embeddings close that class of gap without a maintained word list.
+ *
+ * What it deliberately does NOT do:
+ *  - become a dependency. Off unless LEMMA_BRAIN_EMBEDDINGS is set, and every failure path
+ *    (no Ollama, no model, timeout, malformed response) silently degrades to pure BM25.
+ *    The module's zero-dependency, sub-10ms-per-query design stays the default.
+ *  - replace retrieval. BM25 still selects the candidate set; embeddings only reorder it.
+ *    A memory the inverted index never surfaces can't be rescued here — which is the
+ *    conservative direction, since a wrong reordering costs a place in a list while a wrong
+ *    retrieval costs a wrong answer.
+ *  - block. One probe decides availability for the whole session, each request has a hard
+ *    timeout, and the number of vectors computed per call is capped.
+ *
+ * Vectors live in their own sidecar file, never in entries.ndjson: 768 floats per entry
+ * would multiply the corpus every session re-reads at startup by an order of magnitude, for
+ * data only this optional path ever reads.
+ */
+/** Enabled only on an explicit opt-in — see the module comment. */
+export declare function embeddingsEnabled(): boolean;
+export interface EmbeddedCandidate {
+    id: string;
+    /** Lexical similarity from TheBrainV2.search(), already normalized 0-1. */
+    similarity: number;
+    /** Text to embed when this candidate has no vector yet. */
+    text: string;
+}
+export declare function resetEmbeddingAvailability(): void;
+export declare function cosine(a: number[], b: number[]): number;
+/** Sidecar vector store, keyed by entry id and tagged with the model that produced it. */
+export declare class EmbeddingSidecar {
+    private file;
+    private vectors;
+    private model;
+    private loaded;
+    constructor(file: string);
+    private load;
+    get(id: string): number[] | undefined;
+    set(id: string, vec: number[]): void;
+    /** Drops vectors for ids no longer in the corpus, then rewrites the sidecar atomically. */
+    flush(liveIds: Set<string>): void;
+}
+/**
+ * Blend semantic similarity into an already-ranked candidate list.
+ *
+ * Returns the ids in their new order along with the blended scores, or null when embeddings
+ * are unavailable — the caller then keeps the lexical ordering untouched. Candidates with no
+ * vector (budget exhausted this call) keep their lexical score rather than being scored
+ * against a zero vector, which would drop them below every scored candidate for no reason
+ * other than arriving late in the queue.
+ */
+export declare function semanticRerank(query: string, candidates: EmbeddedCandidate[], sidecar: EmbeddingSidecar): Promise<Map<string, number> | null>;
+//# sourceMappingURL=BrainEmbeddings.d.ts.map

package/dist/cjs/subconscious/BrainEmbeddings.d.ts.map

@@ -0,0 +1 @@
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package/dist/cjs/subconscious/BrainEmbeddings.js

@@ -0,0 +1,222 @@
+"use strict";
+/**
+ * Optional semantic re-ranking for The Brain.
+ *
+ * TheBrainV2 retrieves lexically: BM25 over an inverted index, Jaccard re-rank, plus a
+ * hand-written table of bilingual synonym clusters. That table is the tell — it exists
+ * because a memory stored as "race condition al flushear el índice invertido" is invisible
+ * to a search for "why do memories disappear", and every new vocabulary gap needs another
+ * hand-written cluster. Embeddings close that class of gap without a maintained word list.
+ *
+ * What it deliberately does NOT do:
+ *  - become a dependency. Off unless LEMMA_BRAIN_EMBEDDINGS is set, and every failure path
+ *    (no Ollama, no model, timeout, malformed response) silently degrades to pure BM25.
+ *    The module's zero-dependency, sub-10ms-per-query design stays the default.
+ *  - replace retrieval. BM25 still selects the candidate set; embeddings only reorder it.
+ *    A memory the inverted index never surfaces can't be rescued here — which is the
+ *    conservative direction, since a wrong reordering costs a place in a list while a wrong
+ *    retrieval costs a wrong answer.
+ *  - block. One probe decides availability for the whole session, each request has a hard
+ *    timeout, and the number of vectors computed per call is capped.
+ *
+ * Vectors live in their own sidecar file, never in entries.ndjson: 768 floats per entry
+ * would multiply the corpus every session re-reads at startup by an order of magnitude, for
+ * data only this optional path ever reads.
+ */
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.EmbeddingSidecar = void 0;
+exports.embeddingsEnabled = embeddingsEnabled;
+exports.resetEmbeddingAvailability = resetEmbeddingAvailability;
+exports.cosine = cosine;
+exports.semanticRerank = semanticRerank;
+const fs_1 = __importDefault(require("fs"));
+const path_1 = __importDefault(require("path"));
+/** Enabled only on an explicit opt-in — see the module comment. */
+function embeddingsEnabled() {
+    const flag = process.env.LEMMA_BRAIN_EMBEDDINGS;
+    return flag === '1' || flag === 'true';
+}
+const OLLAMA_URL = () => process.env.LEMMA_OLLAMA_URL || 'http://localhost:11434';
+const EMBED_MODEL = () => process.env.LEMMA_EMBED_MODEL || 'nomic-embed-text';
+/** Hard ceiling on one embedding request. A slow model must not stall a search. */
+const REQUEST_TIMEOUT_MS = 2500;
+/**
+ * How many missing vectors a single search may compute. Without a cap, the first search
+ * against a large Brain would try to embed every candidate at once. Vectors persist, so
+ * repeated searching fills the sidecar in over a few calls instead of one long stall.
+ */
+const EMBED_BUDGET_PER_CALL = 12;
+/** How much of a memory gets embedded. Long responses dilute the vector and cost latency. */
+const EMBED_CHARS = 2000;
+/** Weight of the semantic score against the lexical one in the blend. */
+const SEMANTIC_WEIGHT = 0.4;
+/**
+ * Availability is probed once per process. A developer without Ollama running would
+ * otherwise pay a failed connection per search forever, and the failure is not transient in
+ * any way retrying would fix.
+ */
+let _available = null;
+function resetEmbeddingAvailability() {
+    _available = null;
+}
+async function embed(text) {
+    if (_available === false)
+        return null;
+    const controller = new AbortController();
+    const timer = setTimeout(() => controller.abort(), REQUEST_TIMEOUT_MS);
+    try {
+        const res = await fetch(`${OLLAMA_URL()}/api/embeddings`, {
+            method: 'POST',
+            headers: { 'Content-Type': 'application/json' },
+            body: JSON.stringify({ model: EMBED_MODEL(), prompt: text.slice(0, EMBED_CHARS) }),
+            signal: controller.signal,
+        });
+        if (!res.ok) {
+            _available = false;
+            return null;
+        }
+        const json = await res.json();
+        const vec = json?.embedding;
+        if (!Array.isArray(vec) || vec.length === 0 || typeof vec[0] !== 'number') {
+            _available = false;
+            return null;
+        }
+        _available = true;
+        return vec;
+    }
+    catch {
+        // Connection refused, DNS failure, abort on timeout, unparseable body — all mean the
+        // same thing for this session: fall back to lexical and stop asking.
+        _available = false;
+        return null;
+    }
+    finally {
+        clearTimeout(timer);
+    }
+}
+function cosine(a, b) {
+    if (a.length !== b.length || a.length === 0)
+        return 0;
+    let dot = 0;
+    let na = 0;
+    let nb = 0;
+    for (let i = 0; i < a.length; i++) {
+        dot += a[i] * b[i];
+        na += a[i] * a[i];
+        nb += b[i] * b[i];
+    }
+    if (na === 0 || nb === 0)
+        return 0;
+    return dot / (Math.sqrt(na) * Math.sqrt(nb));
+}
+/** Sidecar vector store, keyed by entry id and tagged with the model that produced it. */
+class EmbeddingSidecar {
+    constructor(file) {
+        this.file = file;
+        this.vectors = new Map();
+        this.loaded = false;
+        this.model = EMBED_MODEL();
+    }
+    load() {
+        if (this.loaded)
+            return;
+        this.loaded = true;
+        try {
+            const raw = fs_1.default.readFileSync(this.file, 'utf8');
+            for (const line of raw.split('\n')) {
+                if (!line)
+                    continue;
+                try {
+                    const rec = JSON.parse(line);
+                    // A vector from a different model is not comparable with one from this model —
+                    // dropping it silently is correct, and it gets recomputed on demand.
+                    if (rec?.id && Array.isArray(rec.v) && rec.m === this.model) {
+                        this.vectors.set(rec.id, rec.v);
+                    }
+                }
+                catch { /* skip corrupt lines */ }
+            }
+        }
+        catch { /* no sidecar yet */ }
+    }
+    get(id) {
+        this.load();
+        return this.vectors.get(id);
+    }
+    set(id, vec) {
+        this.load();
+        this.vectors.set(id, vec);
+    }
+    /** Drops vectors for ids no longer in the corpus, then rewrites the sidecar atomically. */
+    flush(liveIds) {
+        if (!this.loaded || this.vectors.size === 0)
+            return;
+        try {
+            fs_1.default.mkdirSync(path_1.default.dirname(this.file), { recursive: true });
+            const lines = [];
+            for (const [id, v] of this.vectors) {
+                if (!liveIds.has(id)) {
+                    this.vectors.delete(id);
+                    continue;
+                }
+                lines.push(JSON.stringify({ id, m: this.model, v }));
+            }
+            const tmp = `${this.file}.tmp.${process.pid}`;
+            fs_1.default.writeFileSync(tmp, lines.join('\n'), 'utf8');
+            fs_1.default.renameSync(tmp, this.file);
+        }
+        catch {
+            // A cache that fails to persist just gets recomputed. Never surface this.
+        }
+    }
+}
+exports.EmbeddingSidecar = EmbeddingSidecar;
+/**
+ * Blend semantic similarity into an already-ranked candidate list.
+ *
+ * Returns the ids in their new order along with the blended scores, or null when embeddings
+ * are unavailable — the caller then keeps the lexical ordering untouched. Candidates with no
+ * vector (budget exhausted this call) keep their lexical score rather than being scored
+ * against a zero vector, which would drop them below every scored candidate for no reason
+ * other than arriving late in the queue.
+ */
+async function semanticRerank(query, candidates, sidecar) {
+    if (!embeddingsEnabled() || candidates.length === 0)
+        return null;
+    const queryVec = await embed(query);
+    if (!queryVec)
+        return null;
+    const scores = new Map();
+    let budget = EMBED_BUDGET_PER_CALL;
+    for (const c of candidates) {
+        let vec = sidecar.get(c.id);
+        if (!vec && budget > 0) {
+            budget--;
+            const computed = await embed(c.text);
+            if (computed) {
+                sidecar.set(c.id, computed);
+                vec = computed;
+            }
+            else {
+                // Ollama went away mid-loop. Everything scored so far is still valid; stop asking.
+                break;
+            }
+        }
+        if (!vec)
+            continue;
+        const sem = Math.max(0, cosine(queryVec, vec));
+        scores.set(c.id, c.similarity * (1 - SEMANTIC_WEIGHT) + sem * SEMANTIC_WEIGHT);
+    }
+    if (scores.size === 0)
+        return null;
+    // Unscored candidates keep their lexical score so ordering stays total and comparable.
+    for (const c of candidates) {
+        if (!scores.has(c.id))
+            scores.set(c.id, c.similarity);
+    }
+    return scores;
+}
+//# sourceMappingURL=BrainEmbeddings.js.map

package/dist/cjs/subconscious/BrainEmbeddings.js.map

@@ -0,0 +1 @@
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package/dist/cjs/subconscious/GitIngest.js

@@ -84,7 +84,7 @@ function ingestCommit(projectRoot, sha, brain = (0, TheBrainV2_1.getBrain)()) {
         meta.files.length ? `Files: ${meta.files.join(', ')}` : '',
         `Author: ${meta.author} — ${meta.date}`,
     ].filter(Boolean).join('\n');
-    return brain.store(query, response, 'git-commit', 0.92, undefined, (0, TheBrainV2_1.deriveProjectId)(projectRoot));
+    return brain.store(query, response, 'git-commit', 0.92, undefined, (0, TheBrainV2_1.deriveProjectId)(projectRoot), undefined, undefined, undefined, undefined, undefined, { source: 'auto-git' });
 }
 /**
  * Ingest commits since the last marker (or the last `maxCommits` on a first run). Safe to call
@@ -162,7 +162,7 @@ function ingestChangelog(projectRoot, changelogPath) {
     let skipped = 0;
     for (const entry of toIngest) {
         const query = `Lemma changelog v${entry.version}${entry.date ? ` — ${entry.date}` : ''}`;
-        const res = brain.store(query, entry.body, 'changelog', 0.92, undefined, projectId);
+        const res = brain.store(query, entry.body, 'changelog', 0.92, undefined, projectId, undefined, undefined, undefined, undefined, undefined, { source: 'auto-git' });
         if (res.stored)
             ingested++;
         else

package/dist/cjs/subconscious/GitIngest.js.map

@@ -1 +1 @@
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