@nshiab/setup-data-project 4.0.2 → 4.0.3

package/README.md

@@ -49,20 +49,21 @@ Available library flags:
 Run `--help` for usage.
 Library flags keep existing dependency versions and cannot be combined with `--docs`.
 
-The project includes `sda/main.ts`, helpers, tests, data and output folders,
+The project includes `sda/main.ts`, helpers, data and output folders,
 `.env`, `.gitignore`, and managed sections in README.md and AGENTS.md.
 Existing source files, environment values, scripts, tooling configuration,
 and unmanaged documentation are preserved.
 Remove the generated section or its markers from README.md or AGENTS.md to stop updates to that file.
 
-Generated projects run TypeScript directly with Node or Bun. Vite+ provides
-formatting, linting, type checking, and Vitest tests. Use these commands
+Generated projects run TypeScript directly with Node or Bun. Oxfmt and Oxlint
+provide formatting, linting, and TypeScript checking through oxlint-tsgolint.
+Put tests in `sda/test/`. Use these commands
 (replace `npm run` with `bun run` for Bun projects):
 
 - `npm run sda`: run `fix`, then execute `sda/main.ts` once if checks pass.
 - `npm run sda:watch`: do the same on changes to `sda/` and `.env`, excluding `sda/output/`.
 - `npm run sda:status`: check whether an SDA run or watcher is active.
-- `npm run all-tests`: check formatting, lint, types, and tests; succeeds when no tests exist.
+- `npm run all-tests`: check formatting, lint, and TypeScript types. When adding tests, extend this script to run them after the existing checks.
 - `npm run fix`: format files, apply automatic lint fixes, and check types.
 - `npm run docs`: refresh documentation for the installed library versions.
 - `npm run clean`: delete cached results and temporary files in `.sda-cache/`, `.journalism-cache/`, and `.tmp/`.
@@ -72,16 +73,7 @@ SDA blocks simultaneous runs. Recovery after a forced termination is best effort
 New development tools are installed at their latest versions; existing dependencies
 are preserved.
 
-For test-driven development, run one test file and watch for changes (replace the
-example path with your test file):
-
-```sh
-npx vp test sda/tests/example.test.ts --watch
-# Bun
-bun run --bun vp test sda/tests/example.test.ts --watch
-```
-
-VS Code configuration recommends the Vite+ extension pack and enables formatting,
+VS Code configuration recommends the Oxc extension and enables formatting,
 lint fixes on save, and visual line wrapping. Existing `.vscode/extensions.json`
 and `.vscode/settings.json` files are left unchanged.
 

package/dist/main.mjs

@@ -152,7 +152,7 @@ function ensureGitignore() {
 //#endregion
 //#region src/helpers/ensureManagedSection.ts
 function ensureManagedSection(options) {
-	const startMarker = `<!-- setup-data-project:${options.name}:start / Safe to remove if you don't want this section. -->`;
+	const startMarker = `<!-- setup-data-project:${options.name}:start / Safe to remove if you don't want this generated section. -->`;
 	const endMarker = `<!-- setup-data-project:${options.name}:end / End of generated section. -->`;
 	const trimmedContent = options.content.trim();
 	const section = trimmedContent === "" ? `${startMarker}\n${endMarker}` : `${startMarker}\n\n${trimmedContent}\n\n${endMarker}`;
@@ -161,10 +161,10 @@ function ensureManagedSection(options) {
 		return "created";
 	}
 	const currentContent = readFileSync(options.path, "utf-8");
-	const start = currentContent.indexOf(startMarker);
-	const end = currentContent.indexOf(endMarker);
-	if (start === -1 || end === -1 || end < start) return "missing-markers";
-	const nextContent = currentContent.slice(0, start) + section + currentContent.slice(end + endMarker.length);
+	const start = new RegExp(`<!-- setup-data-project:${options.name}:start(?: / [^\\r\\n]*?)? -->`).exec(currentContent);
+	const end = new RegExp(`<!-- setup-data-project:${options.name}:end(?: / [^\\r\\n]*?)? -->`).exec(currentContent);
+	if (!start || !end || end.index < start.index + start[0].length) return "missing-markers";
+	const nextContent = currentContent.slice(0, start.index) + section + currentContent.slice(end.index + end[0].length);
 	if (nextContent === currentContent) return "unchanged";
 	writeFileSync(options.path, ensureFinalNewline(nextContent));
 	return "updated";
@@ -176,27 +176,24 @@ function ensureFinalNewline(content) {
 //#region src/helpers/ensureReadme.ts
 function ensureReadme(runtime, installedPackages = []) {
 	const run = runtime === "bun" ? "bun run" : "npm run";
-	const vp = runtime === "bun" ? "bun run --bun vp" : "npx vp";
 	const libraries = getInstalledPackageConfigs(installedPackages).map((pkg) => `\`${pkg.value}\``).join(", ");
 	ensureManagedSection({
 		path: "README.md",
 		name: "libraries",
 		createContent: (section) => `# Data project\n\nCreated with [setup-data-project](https://github.com/nshiab/setup-data-project).\n\n${section}`,
-		content: `${libraries ? `Installed libraries: ${libraries}.\n\n` : ""}Use sda/main.ts to process source data from sda/data/ and write results to sda/output/. Both data folders are ignored by Git. Put reusable helpers in sda/helpers/ and tests in sda/tests/. Import test utilities from \`vite-plus/test\`.
+		content: `${libraries ? `Installed libraries: ${libraries}.\n\n` : ""}Use sda/main.ts to process source data from sda/data/ and write results to sda/output/. Both data folders are ignored by Git. Put reusable helpers in sda/helpers/ and tests in sda/test/.
 
 - \`${run} sda\`: run \`${run} fix\`, then run the analysis once if checks pass.
 - \`${run} sda:watch\`: do the same on changes to sda/ and .env, excluding sda/output/.
 - \`${run} sda:status\`: check whether an SDA run or watcher is active.
-- \`${run} all-tests\`: check types, lint, formatting, and tests; succeeds when no tests exist.
+- \`${run} all-tests\`: check formatting, lint, and TypeScript types. When adding tests, extend this script to run them after the existing checks.
 - \`${run} fix\`: format files, apply automatic lint fixes, and check types.
 - \`${run} docs\`: refresh documentation for the installed library versions.
 - \`${run} clean\`: delete cached results and temporary files in .sda-cache/, .journalism-cache/, and .tmp/.
 
 SDA blocks simultaneous runs. Recovery after a forced termination is best effort.
 
-Run one test file with \`${vp} test sda/tests/example.test.ts\`. For test-driven development, watch for changes with \`${vp} test sda/tests/example.test.ts --watch\`. Replace the path with your test file.
-
-In VS Code, install the recommended Vite+ extension pack for Oxc formatting and linting and the Vitest test runner. Generated .vscode/settings.json enables formatting and lint fixes on save, plus visual line wrapping. Existing VS Code configuration files are preserved.
+In VS Code, install the recommended Oxc extension for formatting and linting. Generated .vscode/settings.json enables formatting and lint fixes on save, plus visual line wrapping. Existing VS Code configuration files are preserved.
 
 The generated docs/ folder is ignored by Git. Refresh it after cloning or updating dependencies. See AGENTS.md for documentation pointers.`
 	});
@@ -227,29 +224,37 @@ async function installPackages(packages, options = {}) {
 //#endregion
 //#region package.json
 var name = "@nshiab/setup-data-project";
-var version = "4.0.2";
+var version = "4.0.3";
 //#endregion
 //#region src/helpers/ensureTooling.ts
-const tools = ["vite-plus", "@types/node"];
+const tools = [
+	"oxfmt",
+	"oxlint",
+	"oxlint-tsgolint",
+	"@types/node"
+];
 async function ensureTooling(manifest) {
 	const runtime = getRuntime();
 	const runtimeTools = runtime === "bun" ? [...tools, "@types/bun"] : tools;
 	const installed = manifest.getInstalledPackages();
 	await installPackages([...runtimeTools.filter((pkg) => !installed.includes(pkg)).map((pkg) => `${pkg}@latest`), ...installed.includes(name) ? [] : [`${name}@${version}`]], { development: true });
 	if (![
-		"vite.config.ts",
-		"vite.config.js",
-		"vite.config.mts",
-		"vite.config.mjs",
-		"vite.config.cts",
-		"vite.config.cjs"
-	].some((file) => existsSync(file))) writeFileSync("vite.config.ts", `import { defineConfig, loadEnv } from "vite-plus";
-
-export default defineConfig({
-  test: { env: loadEnv("test", process.cwd(), "") },
-  lint: { options: { typeAware: true, typeCheck: true } },
-  fmt: { ignorePatterns: ["docs/**", "sda/data/**", "sda/output/**"] },
-});
+		".oxlintrc.json",
+		".oxlintrc.jsonc",
+		"oxlint.config.ts",
+		"oxlint.config.mts"
+	].some((file) => existsSync(file))) writeFileSync(".oxlintrc.json", `{
+  "options": { "typeAware": true, "typeCheck": true }
+}
+`);
+	if ([
+		".oxfmtrc.json",
+		".oxfmtrc.jsonc",
+		"oxfmt.config.ts",
+		"oxfmt.config.mts"
+	].every((file) => !existsSync(file))) writeFileSync(".oxfmtrc.json", `{
+  "ignorePatterns": ["docs/**", "sda/data/**", "sda/output/**"]
+}
 `);
 	if (!existsSync("tsconfig.json")) writeFileSync("tsconfig.json", `{
   "compilerOptions": {
@@ -262,7 +267,7 @@ export default defineConfig({
     "types": ${runtime === "bun" ? "[\"node\", \"bun\"]" : "[\"node\"]"},
     "skipLibCheck": true
   },
-  "include": ["sda/**/*.ts", "vite.config.*"]
+  "include": ["sda/**/*.ts"]
 }
 `);
 }
@@ -273,7 +278,7 @@ function ensureVscode() {
 	const formatter = "oxc.oxc-vscode";
 	const files = {
 		"extensions.json": `{
-  "recommendations": ["VoidZero.vite-plus-extension-pack"]
+  "recommendations": ["oxc.oxc-vscode"]
 }
 `,
 		"settings.json": `${JSON.stringify({
@@ -298,15 +303,16 @@ function ensureVscode() {
 //#endregion
 //#region src/helpers/getProjectTasks.ts
 function getProjectTasks(runtime = getRuntime()) {
-	const vp = runtime === "bun" ? "bun run --bun vp" : "vp";
+	const fmt = runtime === "bun" ? "bun run --bun oxfmt" : "oxfmt";
+	const lint = `${runtime === "bun" ? "bun run --bun oxlint" : "oxlint"} --type-aware --type-check`;
 	const runner = runtime === "bun" ? "bun run --bun --no-env-file sda-run" : "sda-run";
 	return {
 		sda: `${runner} sda/main.ts`,
 		"sda:watch": `${runner} --watch sda/main.ts sda .env --ignore sda/output`,
 		"sda:status": `${runner} --status`,
-		"all-tests": `${vp} check && ${vp} test --passWithNoTests`,
+		"all-tests": `${fmt} --check && ${lint}`,
 		clean: "rm -rf .sda-cache .journalism-cache .tmp",
-		fix: `${vp} check --fix`,
+		fix: `${fmt} --write && ${lint} --fix`,
 		docs: `${runtime === "bun" ? "bunx --bun" : "npx"} @nshiab/setup-data-project@${version} --docs`
 	};
 }
@@ -317,8 +323,7 @@ function createFolderStructure(selectedPackages) {
 	const folders = [
 		"data",
 		"helpers",
-		"output",
-		"tests"
+		"output"
 	];
 	if (!existsSync(sdaFolder)) mkdirSync(sdaFolder, { recursive: true });
 	for (const folder of folders) {
@@ -348,28 +353,27 @@ function ensureEnvFile() {
 //#region src/helpers/ensureAgents.ts
 function ensureAgents(docsMapping, runtime, installedPackages = Object.keys(docsMapping)) {
 	const run = runtime === "bun" ? "bun run" : "npm run";
+	const links = getInstalledPackageConfigs(installedPackages).map((pkg) => {
+		if (pkg.value === "@observablehq/plot") return `- Observable Plot charts and maps: start at \`docs/observable-plot/llms.txt\`, then read the relevant pages for use with writeChart and writeMap.`;
+		return `- \`${pkg.value}\`: start at \`docs/${pkg.value.slice(8)}/llms.txt\`, then read the relevant API pages and examples.`;
+	});
 	ensureManagedSection({
 		path: "AGENTS.md",
 		name: "agents",
 		createContent: (section) => section,
-		content: `Read package.json for the installed libraries and scripts. Prefer the installed data libraries when they cover the task.
+		content: `Read README.md for project guidance and package.json for the installed libraries and scripts. Use the installed libraries. Ask the user before adding a dependency.
 
-Use sda/main.ts as the entry point and sda/helpers/ for reusable helpers. Put tests in sda/tests/, source data in sda/data/, and results in sda/output/. Import test utilities from \`vite-plus/test\`.
+${links.length ? `Documentation for these installed libraries is available locally:\n\n${links.join("\n")}\n\n` : ""}Before making changes or running project commands, run \`${run} sda:status\` and follow its instructions.
 
-Run \`${run} sda\` to fix and check code, then execute the analysis once. Use \`${run} sda:watch\` to watch for changes. Before handing off code changes, run \`${run} all-tests\` and resolve failures.
+Use sda/main.ts as the entry point and sda/helpers/ for reusable helpers. Keep one function per helper file, with the file named after the function. Put source data in sda/data/ and results in sda/output/.
 
-Before starting work, run \`${run} sda:status\` and follow its instructions.
+Add focused tests for error-prone transformations, reusable logic with meaningful edge cases, and bug fixes. Mirror source paths under sda/test/: for example, sda/helpers/cleanRows.ts maps to sda/test/helpers/cleanRows.test.ts. Prefer the runtime's built-in test runner. When adding tests, extend the \`all-tests\` script to run them after the existing checks.
 
-For a focused test run, use \`${runtime === "bun" ? "bun run --bun vp" : "npx vp"} test sda/tests/example.test.ts\`, replacing the path with your test file. Add \`--watch\` for test-driven development.
+Run \`${run} sda\` to fix and check code, then execute the analysis once.
 
 The clean script removes cached results and temporary files. Run it only when those cached results can be discarded.
 
-Library documentation in docs/ is generated and ignored by Git. Run \`${run} docs\` when documentation is missing or after dependency changes; resolve refresh failures before using possibly stale references. Edit project source files rather than downloaded documentation.
-
-${getInstalledPackageConfigs(installedPackages).map((pkg) => {
-			if (pkg.value === "@observablehq/plot") return `- Observable Plot charts and maps: start at \`docs/observable-plot/llms.txt\`, then read the relevant pages for use with writeChart and writeMap.`;
-			return `- \`${pkg.value}\`: start at \`docs/${pkg.value.slice(8)}/llms.txt\`, then read the relevant API pages and examples.`;
-		}).join("\n")}`
+Before handing off code changes, run \`${run} all-tests\` and resolve failures.`
 	});
 }
 //#endregion
@@ -934,8 +938,8 @@ async function main() {
 	try {
 		projectManifest.updateTasks(getProjectTasks());
 		execFileSync(process$1.execPath, [
-			"node_modules/vite-plus/bin/vp",
-			"fmt",
+			"node_modules/oxfmt/bin/oxfmt",
+			"--write",
 			"package.json"
 		], { stdio: "pipe" });
 		createFolderStructure(finalInstalledPackages);

package/dist/main.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"main.mjs","names":["process","metadata.name","metadata.version","metadata.version","process"],"sources":["../src/helpers/getRuntime.ts","../src/helpers/packageRegistry.ts","../src/helpers/packageOptions.ts","../src/helpers/gitignoreEntries.ts","../src/helpers/ensureGitignore.ts","../src/helpers/ensureManagedSection.ts","../src/helpers/ensureReadme.ts","../src/helpers/installPackages.ts","../package.json","../src/helpers/ensureTooling.ts","../src/helpers/ensureVscode.ts","../src/helpers/getProjectTasks.ts","../src/helpers/createFolderStructure.ts","../src/helpers/ensureEnvFile.ts","../src/helpers/ensureAgents.ts","../src/helpers/projectManifest.ts","../src/helpers/fetchPackageDocs.ts","../src/helpers/cleanPlotMarkdown.ts","../src/helpers/combinePlotDocs.ts","../src/helpers/plotDocPages.ts","../src/helpers/splitPlotDocs.ts","../src/helpers/fetchPlotDocs.ts","../src/helpers/syncPackageDocs.ts","../src/helpers/getInstalledPackageVersions.ts","../src/helpers/parseArguments.ts","../src/main.ts"],"sourcesContent":["import process from \"node:process\";\nexport type Runtime = \"node\" | \"bun\";\nexport function getRuntime(versions: { bun?: string; node?: string } = process.versions): Runtime {\n  return versions.bun ? \"bun\" : \"node\";\n}\n","export interface PackageConfig {\n  value: string;\n  label: string;\n  type: \"sda\" | \"journalism\" | \"other\";\n  hint?: string;\n}\n\nexport const SUPPORTED_PACKAGES: PackageConfig[] = [\n  {\n    value: \"@nshiab/simple-data-analysis\",\n    label: \"simple-data-analysis\",\n    type: \"sda\",\n    hint: \"All the core functionality, plus methods for dataviz, AI, Google sheets, etc.\",\n  },\n  {\n    value: \"@nshiab/simple-data-analysis-core\",\n    label: \"simple-data-analysis-core\",\n    type: \"sda\",\n    hint: \"No fluff. Great for constrained environments, like a cheap server.\",\n  },\n  {\n    value: \"@nshiab/journalism-ai\",\n    label: \"journalism-ai\",\n    type: \"journalism\",\n    hint: \"Easily use AI local models with Ollama or remote models with Gemini/Vertex.\",\n  },\n  {\n    value: \"@nshiab/journalism-google\",\n    label: \"journalism-google\",\n    type: \"journalism\",\n    hint: \"Push and retrieve data from Google Sheets, Google Bucket, and more.\",\n  },\n  {\n    value: \"@nshiab/journalism-web-scraping\",\n    label: \"journalism-web-scraping\",\n    type: \"journalism\",\n    hint: \"Retrieve data from Statistics Canada tables, HTML table, download files...\",\n  },\n  {\n    value: \"@nshiab/journalism-finance\",\n    label: \"journalism-finance\",\n    type: \"journalism\",\n    hint: \"Retrieve financial data, calculate Canadian mortgage payments and taxes...\",\n  },\n  {\n    value: \"@nshiab/journalism-format\",\n    label: \"journalism-format\",\n    type: \"journalism\",\n    hint: \"Easily format dates, numbers, currencies...\",\n  },\n  {\n    value: \"@nshiab/journalism-climate\",\n    label: \"journalism-climate\",\n    type: \"journalism\",\n    hint: \"Retrieve data from Environment Canada APIs and more.\",\n  },\n  {\n    value: \"@nshiab/journalism-dataviz\",\n    label: \"journalism-dataviz\",\n    type: \"journalism\",\n    hint: \"Render charts/maps with Observable Plot or directly in the terminal.\",\n  },\n  {\n    value: \"@nshiab/journalism-geo\",\n    label: \"journalism-geo\",\n    type: \"journalism\",\n    hint: \"Calculate distances, transform 2D coordinates to 3D, wrangle GeoTIFF files...\",\n  },\n  {\n    value: \"@nshiab/journalism-statistics\",\n    label: \"journalism-statistics\",\n    type: \"journalism\",\n    hint: \"Functions for statistical tests, clustering, random path generation...\",\n  },\n  {\n    value: \"@nshiab/journalism-web\",\n    label: \"journalism-web\",\n    type: \"journalism\",\n    hint: \"Web related functions, including downloading data as CSV, extracting ZIP files to URLs...\",\n  },\n  {\n    value: \"@nshiab/journalism-extras\",\n    label: \"journalism-extras\",\n    type: \"journalism\",\n    hint: \"Functions to zip/unzip, sleep, reencode files, create nested directories...\",\n  },\n];\n\n// Plot is installed alongside charting libraries, but is not a setup menu option.\nexport const DOCUMENTED_PACKAGES: PackageConfig[] = [\n  ...SUPPORTED_PACKAGES,\n  { value: \"@nshiab/journalism\", label: \"journalism\", type: \"journalism\" },\n  { value: \"@observablehq/plot\", label: \"Observable Plot\", type: \"other\" },\n];\n\nexport function getInstalledPackageConfigs(installedPackages: string[]): PackageConfig[] {\n  const installedSet = new Set(installedPackages);\n  return DOCUMENTED_PACKAGES.filter((pkg) => installedSet.has(pkg.value));\n}\n","import { SUPPORTED_PACKAGES } from \"./packageRegistry.ts\";\n\nexport const PACKAGE_OPTIONS = SUPPORTED_PACKAGES.map((pkg) => ({\n  value: pkg.value,\n  label: pkg.label,\n  hint: pkg.hint,\n}));\n","export const GITIGNORE_ENTRIES = [\n  \"node_modules\",\n  \"docs/\",\n  \".tmp\",\n  \".sda-cache\",\n  \"sda/.sda.pid\",\n  \"sda/.sda-lock/\",\n  \".journalism-cache\",\n  \"sda/data\",\n  \"sda/output\",\n  \".env\",\n  \".DS_Store\",\n];\n","import { lstatSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { GITIGNORE_ENTRIES } from \"./gitignoreEntries.ts\";\n\nexport const GITIGNORE_SENTINEL = \"# Added by setup-data-project. Do not remove this line.\";\n\nexport function ensureGitignore() {\n  const path = \".gitignore\";\n  const stats = lstatSync(path, { throwIfNoEntry: false });\n\n  if (stats?.isSymbolicLink()) {\n    return;\n  }\n\n  const content = stats === undefined ? \"\" : readFileSync(path, \"utf-8\");\n  const hasSentinel = content.split(\"\\n\").some((line) => line.trim() === GITIGNORE_SENTINEL);\n\n  if (hasSentinel) {\n    const entries = new Set(content.split(\"\\n\").map((line) => line.trim()));\n    const missing = GITIGNORE_ENTRIES.filter((entry) => !entries.has(entry));\n    if (missing.length)\n      writeFileSync(\n        path,\n        content + (content.endsWith(\"\\n\") ? \"\" : \"\\n\") + missing.join(\"\\n\") + \"\\n\",\n      );\n    return;\n  }\n\n  const separator = content === \"\" ? \"\" : content.endsWith(\"\\n\") ? \"\\n\" : \"\\n\\n\";\n  const block = `${GITIGNORE_SENTINEL}\\n${GITIGNORE_ENTRIES.join(\"\\n\")}\\n`;\n  writeFileSync(path, content + separator + block);\n}\n","import { existsSync, readFileSync, writeFileSync } from \"node:fs\";\n\ninterface ManagedSectionOptions {\n  path: string;\n  name: string;\n  content: string;\n  createContent: (section: string) => string;\n}\n\nexport function ensureManagedSection(\n  options: ManagedSectionOptions,\n): \"created\" | \"updated\" | \"unchanged\" | \"missing-markers\" {\n  const startMarker = `<!-- setup-data-project:${options.name}:start / Safe to remove if you don't want this section. -->`;\n  const endMarker = `<!-- setup-data-project:${options.name}:end / End of generated section. -->`;\n  const trimmedContent = options.content.trim();\n  const section =\n    trimmedContent === \"\"\n      ? `${startMarker}\\n${endMarker}`\n      : `${startMarker}\\n\\n${trimmedContent}\\n\\n${endMarker}`;\n\n  if (!existsSync(options.path)) {\n    writeFileSync(options.path, ensureFinalNewline(options.createContent(section)));\n    return \"created\";\n  }\n\n  const currentContent = readFileSync(options.path, \"utf-8\");\n  const start = currentContent.indexOf(startMarker);\n  const end = currentContent.indexOf(endMarker);\n\n  if (start === -1 || end === -1 || end < start) {\n    return \"missing-markers\";\n  }\n\n  const nextContent =\n    currentContent.slice(0, start) + section + currentContent.slice(end + endMarker.length);\n\n  if (nextContent === currentContent) {\n    return \"unchanged\";\n  }\n\n  writeFileSync(options.path, ensureFinalNewline(nextContent));\n  return \"updated\";\n}\n\nfunction ensureFinalNewline(content: string): string {\n  return content.endsWith(\"\\n\") ? content : content + \"\\n\";\n}\n","import { ensureManagedSection } from \"./ensureManagedSection.ts\";\nimport { getInstalledPackageConfigs } from \"./packageRegistry.ts\";\nimport type { Runtime } from \"./getRuntime.ts\";\nexport function ensureReadme(runtime: Runtime, installedPackages: string[] = []) {\n  const run = runtime === \"bun\" ? \"bun run\" : \"npm run\";\n  const vp = runtime === \"bun\" ? \"bun run --bun vp\" : \"npx vp\";\n  const libraries = getInstalledPackageConfigs(installedPackages)\n    .map((pkg) => `\\`${pkg.value}\\``)\n    .join(\", \");\n  ensureManagedSection({\n    path: \"README.md\",\n    name: \"libraries\",\n    createContent: (section) =>\n      `# Data project\\n\\nCreated with [setup-data-project](https://github.com/nshiab/setup-data-project).\\n\\n${section}`,\n    content: `${libraries ? `Installed libraries: ${libraries}.\\n\\n` : \"\"}Use sda/main.ts to process source data from sda/data/ and write results to sda/output/. Both data folders are ignored by Git. Put reusable helpers in sda/helpers/ and tests in sda/tests/. Import test utilities from \\`vite-plus/test\\`.\n\n- \\`${run} sda\\`: run \\`${run} fix\\`, then run the analysis once if checks pass.\n- \\`${run} sda:watch\\`: do the same on changes to sda/ and .env, excluding sda/output/.\n- \\`${run} sda:status\\`: check whether an SDA run or watcher is active.\n- \\`${run} all-tests\\`: check types, lint, formatting, and tests; succeeds when no tests exist.\n- \\`${run} fix\\`: format files, apply automatic lint fixes, and check types.\n- \\`${run} docs\\`: refresh documentation for the installed library versions.\n- \\`${run} clean\\`: delete cached results and temporary files in .sda-cache/, .journalism-cache/, and .tmp/.\n\nSDA blocks simultaneous runs. Recovery after a forced termination is best effort.\n\nRun one test file with \\`${vp} test sda/tests/example.test.ts\\`. For test-driven development, watch for changes with \\`${vp} test sda/tests/example.test.ts --watch\\`. Replace the path with your test file.\n\nIn VS Code, install the recommended Vite+ extension pack for Oxc formatting and linting and the Vitest test runner. Generated .vscode/settings.json enables formatting and lint fixes on save, plus visual line wrapping. Existing VS Code configuration files are preserved.\n\nThe generated docs/ folder is ignored by Git. Refresh it after cloning or updating dependencies. See AGENTS.md for documentation pointers.`,\n  });\n}\n","import { execFile } from \"node:child_process\";\nimport { getRuntime } from \"./getRuntime.ts\";\nexport function runPackageManager(args: string[]): Promise<void> {\n  const command = getRuntime() === \"bun\" ? \"bun\" : process.platform === \"win32\" ? \"npm.cmd\" : \"npm\";\n  return new Promise((resolve, reject) => {\n    execFile(\n      command,\n      args,\n      { maxBuffer: 10 * 1024 * 1024, shell: process.platform === \"win32\" },\n      (error, stdout, stderr) => {\n        if (error)\n          reject(\n            new Error(`${command} ${args.join(\" \")} failed.\\n${stderr || stdout}`, {\n              cause: error,\n            }),\n          );\n        else resolve();\n      },\n    );\n  });\n}\nexport async function installPackages(\n  packages: string[],\n  options: { development?: boolean } = {},\n): Promise<void> {\n  if (packages.length === 0) return;\n  const bun = getRuntime() === \"bun\";\n  await runPackageManager([\n    bun ? \"add\" : \"install\",\n    ...(options.development ? (bun ? [\"--dev\"] : [\"--save-dev\"]) : []),\n    ...packages,\n  ]);\n}\n","","import { existsSync, writeFileSync } from \"node:fs\";\nimport { ProjectManifest } from \"./projectManifest.ts\";\nimport { getRuntime } from \"./getRuntime.ts\";\nimport { installPackages } from \"./installPackages.ts\";\nimport metadata from \"../../package.json\" with { type: \"json\" };\nconst tools = [\"vite-plus\", \"@types/node\"];\nexport async function ensureTooling(manifest: ProjectManifest): Promise<void> {\n  const runtime = getRuntime();\n  const runtimeTools = runtime === \"bun\" ? [...tools, \"@types/bun\"] : tools;\n  const installed = manifest.getInstalledPackages();\n  await installPackages(\n    [\n      ...runtimeTools.filter((pkg) => !installed.includes(pkg)).map((pkg) => `${pkg}@latest`),\n      ...(installed.includes(metadata.name) ? [] : [`${metadata.name}@${metadata.version}`]),\n    ],\n    { development: true },\n  );\n  if (\n    ![\n      \"vite.config.ts\",\n      \"vite.config.js\",\n      \"vite.config.mts\",\n      \"vite.config.mjs\",\n      \"vite.config.cts\",\n      \"vite.config.cjs\",\n    ].some((file) => existsSync(file))\n  ) {\n    writeFileSync(\n      \"vite.config.ts\",\n      `import { defineConfig, loadEnv } from \"vite-plus\";\n\nexport default defineConfig({\n  test: { env: loadEnv(\"test\", process.cwd(), \"\") },\n  lint: { options: { typeAware: true, typeCheck: true } },\n  fmt: { ignorePatterns: [\"docs/**\", \"sda/data/**\", \"sda/output/**\"] },\n});\n`,\n    );\n  }\n  if (!existsSync(\"tsconfig.json\"))\n    writeFileSync(\n      \"tsconfig.json\",\n      `{\n  \"compilerOptions\": {\n    \"target\": \"ES2023\",\n    \"module\": \"NodeNext\",\n    \"strict\": true,\n    \"noEmit\": true,\n    \"allowImportingTsExtensions\": true,\n    \"erasableSyntaxOnly\": ${runtime === \"node\"},\n    \"types\": ${runtime === \"bun\" ? '[\"node\", \"bun\"]' : '[\"node\"]'},\n    \"skipLibCheck\": true\n  },\n  \"include\": [\"sda/**/*.ts\", \"vite.config.*\"]\n}\n`,\n    );\n}\n","import { existsSync, mkdirSync, writeFileSync } from \"node:fs\";\n\nexport function ensureVscode(): void {\n  mkdirSync(\".vscode\", { recursive: true });\n  const formatter = \"oxc.oxc-vscode\";\n  const files = {\n    \"extensions.json\": `{\n  \"recommendations\": [\"VoidZero.vite-plus-extension-pack\"]\n}\n`,\n    \"settings.json\": `${JSON.stringify(\n      {\n        \"editor.defaultFormatter\": formatter,\n        \"[javascript]\": { \"editor.defaultFormatter\": formatter },\n        \"[javascriptreact]\": { \"editor.defaultFormatter\": formatter },\n        \"[typescript]\": { \"editor.defaultFormatter\": formatter },\n        \"[typescriptreact]\": { \"editor.defaultFormatter\": formatter },\n        \"oxc.disableNestedConfig\": true,\n        \"oxc.fmt.disableNestedConfig\": true,\n        \"editor.formatOnSave\": true,\n        \"editor.formatOnSaveMode\": \"file\",\n        \"editor.codeActionsOnSave\": { \"source.fixAll.oxc\": \"explicit\" },\n        \"editor.wordWrap\": \"on\",\n      },\n      null,\n      2,\n    )}\\n`,\n  };\n  for (const [name, config] of Object.entries(files)) {\n    const path = `.vscode/${name}`;\n    if (!existsSync(path)) writeFileSync(path, config);\n  }\n}\n","import { getRuntime, type Runtime } from \"./getRuntime.ts\";\nimport metadata from \"../../package.json\" with { type: \"json\" };\nexport function getProjectTasks(runtime: Runtime = getRuntime()) {\n  const vp = runtime === \"bun\" ? \"bun run --bun vp\" : \"vp\";\n  const runner = runtime === \"bun\" ? \"bun run --bun --no-env-file sda-run\" : \"sda-run\";\n  return {\n    sda: `${runner} sda/main.ts`,\n    \"sda:watch\": `${runner} --watch sda/main.ts sda .env --ignore sda/output`,\n    \"sda:status\": `${runner} --status`,\n    \"all-tests\": `${vp} check && ${vp} test --passWithNoTests`,\n    clean: \"rm -rf .sda-cache .journalism-cache .tmp\",\n    fix: `${vp} check --fix`,\n    docs: `${runtime === \"bun\" ? \"bunx --bun\" : \"npx\"} @nshiab/setup-data-project@${metadata.version} --docs`,\n  };\n}\n","import { existsSync, lstatSync, mkdirSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\n\nexport function createFolderStructure(selectedPackages: string[]) {\n  const sdaFolder = \"sda\";\n  const folders = [\"data\", \"helpers\", \"output\", \"tests\"];\n\n  if (!existsSync(sdaFolder)) {\n    mkdirSync(sdaFolder, { recursive: true });\n  }\n\n  for (const folder of folders) {\n    const path = join(sdaFolder, folder);\n    if (!existsSync(path)) {\n      mkdirSync(path, { recursive: true });\n    }\n  }\n\n  const mainTsPath = join(sdaFolder, \"main.ts\");\n\n  let mainTsContent = 'console.log(\"Hello simple-data-analysis!\");\\n';\n\n  if (\n    selectedPackages.includes(\"@nshiab/simple-data-analysis\") ||\n    selectedPackages.includes(\"@nshiab/simple-data-analysis-core\")\n  ) {\n    const pkg = selectedPackages.includes(\"@nshiab/simple-data-analysis\")\n      ? \"@nshiab/simple-data-analysis\"\n      : \"@nshiab/simple-data-analysis-core\";\n    mainTsContent = `import { SimpleDB } from \"${pkg}\";\n\nconst sdb = new SimpleDB();\nconst table = sdb.newTable();\n\nawait table.loadArray([{ message: \"Hello simple-data-analysis!\" }]).log();\n\nawait sdb.close();\n`;\n  }\n\n  if (lstatSync(mainTsPath, { throwIfNoEntry: false }) === undefined) {\n    writeFileSync(mainTsPath, mainTsContent);\n  }\n\n  return sdaFolder;\n}\n","import { lstatSync, writeFileSync } from \"node:fs\";\n\nexport function ensureEnvFile() {\n  if (lstatSync(\".env\", { throwIfNoEntry: false }) === undefined) {\n    writeFileSync(\".env\", \"\");\n  }\n}\n","import type { PackageDocs } from \"./fetchPackageDocs.ts\";\nimport { ensureManagedSection } from \"./ensureManagedSection.ts\";\nimport { getInstalledPackageConfigs } from \"./packageRegistry.ts\";\nimport type { Runtime } from \"./getRuntime.ts\";\nexport function ensureAgents(\n  docsMapping: Record<string, PackageDocs>,\n  runtime: Runtime,\n  installedPackages: string[] = Object.keys(docsMapping),\n) {\n  const run = runtime === \"bun\" ? \"bun run\" : \"npm run\";\n  const vp = runtime === \"bun\" ? \"bun run --bun vp\" : \"npx vp\";\n  const links = getInstalledPackageConfigs(installedPackages).map((pkg) => {\n    if (pkg.value === \"@observablehq/plot\")\n      return `- Observable Plot charts and maps: start at \\`docs/observable-plot/llms.txt\\`, then read the relevant pages for use with writeChart and writeMap.`;\n    return `- \\`${pkg.value}\\`: start at \\`docs/${pkg.value.slice(\"@nshiab/\".length)}/llms.txt\\`, then read the relevant API pages and examples.`;\n  });\n  ensureManagedSection({\n    path: \"AGENTS.md\",\n    name: \"agents\",\n    createContent: (section) => section,\n    content: `Read package.json for the installed libraries and scripts. Prefer the installed data libraries when they cover the task.\n\nUse sda/main.ts as the entry point and sda/helpers/ for reusable helpers. Put tests in sda/tests/, source data in sda/data/, and results in sda/output/. Import test utilities from \\`vite-plus/test\\`.\n\nRun \\`${run} sda\\` to fix and check code, then execute the analysis once. Use \\`${run} sda:watch\\` to watch for changes. Before handing off code changes, run \\`${run} all-tests\\` and resolve failures.\n\nBefore starting work, run \\`${run} sda:status\\` and follow its instructions.\n\nFor a focused test run, use \\`${vp} test sda/tests/example.test.ts\\`, replacing the path with your test file. Add \\`--watch\\` for test-driven development.\n\nThe clean script removes cached results and temporary files. Run it only when those cached results can be discarded.\n\nLibrary documentation in docs/ is generated and ignored by Git. Run \\`${run} docs\\` when documentation is missing or after dependency changes; resolve refresh failures before using possibly stale references. Edit project source files rather than downloaded documentation.\n\n${links.join(\"\\n\")}`,\n  });\n}\n","import { existsSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { isObject } from \"./jsonObject.ts\";\nexport class ProjectManifest {\n  #config: Record<string, unknown>;\n  private constructor(config: Record<string, unknown>) {\n    this.#config = config;\n  }\n  static open(): ProjectManifest {\n    if (!existsSync(\"package.json\"))\n      return new ProjectManifest({ name: \"data-project\", private: true, type: \"module\" });\n    const config: unknown = JSON.parse(readFileSync(\"package.json\", \"utf8\"));\n    if (!isObject(config)) throw new Error(\"package.json must contain a JSON object.\");\n    return new ProjectManifest(config);\n  }\n  reload(): void {\n    this.#config = ProjectManifest.open().#config;\n  }\n  getInstalledPackages(): string[] {\n    return Object.keys(this.getInstalledPackageSpecifiers());\n  }\n  getInstalledPackageSpecifiers(): Record<string, string> {\n    const packages: Record<string, string> = {};\n    for (const key of [\"dependencies\", \"devDependencies\"]) {\n      const dependencies = this.#config[key];\n      if (isObject(dependencies))\n        for (const [name, version] of Object.entries(dependencies)) {\n          if (typeof version === \"string\") packages[name] = version;\n        }\n    }\n    return packages;\n  }\n  updateTasks(tasks: Record<string, string>): void {\n    if (this.#config.type === \"commonjs\") {\n      throw new Error(\n        'Setup requires an ESM project. Set \"type\": \"module\" in package.json, or use --docs to refresh documentation only.',\n      );\n    }\n    if (this.#config.type === undefined) this.#config.type = \"module\";\n    const existing = this.#config.scripts;\n    this.#config.scripts = { ...tasks, ...(isObject(existing) ? existing : {}) };\n    writeFileSync(\"package.json\", JSON.stringify(this.#config, null, 2) + \"\\n\");\n  }\n}\n","import { log } from \"@clack/prompts\";\nimport {\n  existsSync,\n  mkdirSync,\n  mkdtempSync,\n  readFileSync,\n  renameSync,\n  rmSync,\n  writeFileSync,\n} from \"node:fs\";\nimport { join, posix } from \"node:path\";\nimport { x } from \"tar\";\nimport { DOCUMENTED_PACKAGES } from \"./packageRegistry.ts\";\nexport interface PackageDocs {\n  readme?: string;\n  index?: string;\n  llm?: string;\n  plot?: { version: string; pages: string[] };\n}\nexport async function fetchPackageDocs(pkg: string, version: string): Promise<PackageDocs> {\n  const config = DOCUMENTED_PACKAGES.find(\n    (item) => item.value === pkg && item.value.startsWith(\"@nshiab/\"),\n  );\n  if (!config || !/^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/.test(version))\n    throw new Error(`Unsupported package or version: ${pkg}@${version}`);\n  const repo = pkg.slice(\"@nshiab/\".length);\n  mkdirSync(\"docs\", { recursive: true });\n  const staging = mkdtempSync(join(\"docs\", \".download-\"));\n  const contents = join(staging, \"contents\");\n  const target = join(\"docs\", repo);\n  const backup = join(staging, \"previous\");\n  try {\n    const url = `https://github.com/nshiab/${repo}/releases/download/v${version}/documentation.tar.gz`;\n    const response = await fetch(url);\n    if (!response.ok) throw new Error(`HTTP ${response.status} from ${url}`);\n    const archive = join(staging, \"documentation.tar.gz\");\n    writeFileSync(archive, Buffer.from(await response.arrayBuffer()));\n    mkdirSync(contents);\n    let unsafeEntry: string | undefined;\n    await x({\n      file: archive,\n      cwd: contents,\n      strict: true,\n      preservePaths: false,\n      filter(path, entry) {\n        const normalized = posix.normalize(path);\n        if (\n          path.includes(\"\\\\\") ||\n          path.startsWith(\"/\") ||\n          normalized === \"..\" ||\n          normalized.startsWith(\"../\") ||\n          !(\"type\" in entry) ||\n          ![\"File\", \"Directory\"].includes(entry.type)\n        ) {\n          unsafeEntry = path;\n          return false;\n        }\n        return true;\n      },\n    });\n    if (unsafeEntry !== undefined) throw new Error(`Unsafe archive entry: ${unsafeEntry}`);\n    for (const path of [\"README.md\", \"LICENSE\", \"llms.txt\", \"docs\"]) {\n      if (!existsSync(join(contents, path)))\n        throw new Error(`Documentation archive is missing ${path}.`);\n    }\n    const readme = readFileSync(join(contents, \"README.md\"), \"utf8\");\n    const index = readFileSync(join(contents, \"llms.txt\"), \"utf8\");\n    if (existsSync(target)) renameSync(target, backup);\n    try {\n      renameSync(contents, target);\n    } catch (error) {\n      if (existsSync(backup)) renameSync(backup, target);\n      throw error;\n    }\n    return { readme, index };\n  } catch (error) {\n    log.warn(\n      `Could not refresh ${pkg}@${version}: ${String(error)} Existing documentation was preserved and may be stale. Run the docs script again after resolving the error.`,\n    );\n    return {};\n  } finally {\n    rmSync(staging, { recursive: true, force: true });\n  }\n}\n","// Plot's source is VitePress Markdown. Keep examples as reference material,\n// but remove the website UI and turn its custom containers into ordinary text.\nexport function cleanPlotMarkdown(content: string): string {\n  const preserved: string[] = [];\n  const keep = (value: string) => {\n    preserved.push(value);\n    return `\\uE000PLOT${preserved.length - 1}\\uE000`;\n  };\n  const lines = content.split(\"\\n\");\n  const prose: string[] = [];\n  for (let index = 0; index < lines.length; index++) {\n    if (/^\\s*<!--/.test(lines[index])) {\n      const start = index;\n      while (!lines[index].includes(\"-->\") && index + 1 < lines.length) index++;\n      prose.push(lines.slice(start, index + 1).join(\"\\n\"));\n      continue;\n    }\n    const opening = lines[index].match(/^ {0,3}(`{3,}|~{3,})(.*)$/);\n    if (!opening) {\n      prose.push(lines[index]);\n      continue;\n    }\n    const start = index;\n    while (++index < lines.length) {\n      const closing = lines[index].match(/^ {0,3}(`{3,}|~{3,})\\s*$/);\n      if (closing?.[1][0] === opening[1][0] && closing[1].length >= opening[1].length) break;\n    }\n    if (index >= lines.length) throw new Error(\"Unclosed Plot code fence.\");\n    const block = lines.slice(start, index + 1);\n    if (opening[2].trim() === \"js-vue\") {\n      block[0] = `${opening[1]}text`;\n      prose.push(\n        keep(\n          \"Interactive example template (values in `{{…}}` come from the upstream website):\\n\\n\" +\n            block.join(\"\\n\"),\n        ),\n      );\n    } else {\n      prose.push(keep(block.join(\"\\n\")));\n    }\n  }\n  let result = prose\n    .join(\"\\n\")\n    .replace(/<script\\b[^>]*>([\\s\\S]*?)<\\/script>/g, (_match: string, code: string) => {\n      const fence = \"`\".repeat(\n        Math.max(3, ...[...code.matchAll(/`+/g)].map((match) => match[0].length + 1)),\n      );\n      return keep(\n        `**Upstream example setup.** This code may use Vue and sample data from the linked source page.\\n\\n${fence}js\\n${code.trim()}\\n${fence}`,\n      );\n    })\n    .replace(/^[ \\t]*<!--(?!\\s*setup-data-project:)[\\s\\S]*?-->/gm, \"\")\n    .replace(\n      /<\\/?[A-Za-z](?:\"[^\"]*\"|'[^']*'|[^'\"><])*>|(`+)[^`\\n]*?\\1/g,\n      (part: string, fence: string | undefined) => (fence ? keep(part) : part),\n    )\n    .replace(/<style\\b[^>]*>[\\s\\S]*?<\\/style>/g, \"\")\n    .replace(/<p\\b[^>]*>([\\s\\S]*?)<\\/p>/g, (_match: string, body: string) =>\n      /<(?:input|select|label)\\b/.test(body) ? \"\" : body,\n    )\n    .replace(/<PlotRender\\b[\\s\\S]*?\\/>/g, (component) => {\n      const options = component.match(/:options=([\"'])([\\s\\S]*?)\\1/)?.[2];\n      const method = component.match(/\\bmethod=[\"'](\\w+)[\"']/)?.[1] ?? \"plot\";\n      if (!options) throw new Error(\"Unrecognized PlotRender example.\");\n      return keep(`\\`\\`\\`js\\nPlot.${method}(${options});\\n\\`\\`\\``);\n    })\n    .replace(/<VersionBadge\\b[\\s\\S]*?\\/>/g, (badge) => {\n      const version = badge.match(/\\bversion=[\"']([^\"']+)[\"']/)?.[1];\n      return version ? `(since v${version})` : \"\";\n    })\n    .replace(/<\\/?span\\b(?:\"[^\"]*\"|'[^']*'|[^'\">])*>/g, \"\")\n    .replace(/<svg\\b[\\s\\S]*?<\\/svg>/g, \"arrow\");\n  result = result\n    .replace(/^[ \\t]*:::plot\\b([^\\n]*)/gm, (_match: string, options: string) => {\n      const url = options.match(/https?:\\/\\/\\S+/)?.[0];\n      return url ? `[Interactive example](${url})\\n` : \"\";\n    })\n    .replace(\n      /^([ \\t]*):::(tip|info|warning)\\b[ \\t]*/gm,\n      (_match: string, indent: string, kind: string) =>\n        `${indent}**${kind[0].toUpperCase() + kind.slice(1)}:** `,\n    )\n    .replace(/^[ \\t]*:::[ \\t]*$/gm, \"\")\n    .replace(/[ \\t]+:::[ \\t]*$/gm, \"\")\n    .replace(\n      /\\{\\{([\\s\\S]*?)\\}\\}/g,\n      (_match: string, expression: string) => `\\`${expression.trim().replace(/\\s+/g, \" \")}\\``,\n    )\n    .replace(/[ \\t]+$/gm, \"\")\n    .replace(/\\n{3,}/g, \"\\n\\n\")\n    .trim();\n  return (\n    result.replace(\n      /\\uE000PLOT(\\d+)\\uE000/g,\n      (_match: string, index: string) => preserved[Number(index)],\n    ) + \"\\n\"\n  );\n}\n","import { cleanPlotMarkdown } from \"./cleanPlotMarkdown.ts\";\nimport { posix } from \"node:path\";\n\n// The Plot source uses ATX headings, explicit VitePress IDs, and Markdown fences.\n// Keep code verbatim; rewrite only prose links and anchors while joining pages.\nexport function combinePlotDocs(version: string, documents: Map<string, string>): string {\n  const pages = [...documents.keys()].sort();\n  const source = `https://github.com/observablehq/plot/tree/v${version}/docs`;\n  const anchors = new Map<string, Map<string, string>>();\n  const sections = new Map<string, { line: number; title: string; id: string }[]>();\n  const pageId = (page: string) => `plot-${page.replace(/\\.md$/, \"\").replaceAll(\"/\", \"--\")}`;\n\n  for (const page of pages) {\n    const ids = new Map<string, string>();\n    const headings: { line: number; title: string; id: string }[] = [];\n    const counts = new Map<string, number>();\n    proseLines(documents.get(page) ?? \"\", (line, number) => {\n      for (const match of line.matchAll(/\\bid=[\"']([^\"']+)[\"']/g)) {\n        ids.set(match[1], `${pageId(page)}--${match[1]}`);\n      }\n      const heading = line.match(/^ {0,3}#{1,6}\\s+(.+?)\\s*#*\\s*$/);\n      if (!heading) return line;\n      const explicit = heading[1].match(/\\{#([^}]+)\\}/)?.[1];\n      const title = heading[1].replace(/\\s*\\{#[^}]+\\}/g, \"\");\n      const slug =\n        explicit ??\n        title\n          .replace(/<[^>]*>/g, \"\")\n          .toLowerCase()\n          .replace(/[^\\p{L}\\p{N}_\\s-]/gu, \"\")\n          .trim()\n          .replace(/\\s+/g, \"-\");\n      const count = counts.get(slug) ?? 0;\n      counts.set(slug, count + 1);\n      const localId = `${slug}${count ? `-${count}` : \"\"}`;\n      const id = `${pageId(page)}--${localId}`;\n      ids.set(localId, id);\n      headings.push({ line: number, title, id });\n      return line;\n    });\n    anchors.set(page, ids);\n    sections.set(page, headings);\n  }\n\n  function link(target: string, page: string): string {\n    if (/^(?:[a-z][a-z\\d+.-]*:|\\/\\/)/i.test(target)) return target;\n    const [pathAndQuery, fragment] = target.split(\"#\", 2);\n    const path = pathAndQuery.split(\"?\", 1)[0];\n    const resolved =\n      path === \"\"\n        ? page\n        : posix.normalize(\n            path.startsWith(\"/\") ? path.slice(1) : posix.join(posix.dirname(page), path),\n          );\n    const markdown = [resolved, `${resolved}.md`, `${resolved}/index.md`].find((candidate) =>\n      documents.has(candidate),\n    );\n    if (markdown) {\n      const id = fragment\n        ? anchors.get(markdown)?.get(decodeURIComponent(fragment))\n        : pageId(markdown);\n      if (id) return `#${id}`;\n      // Preserve an upstream target when a fragment is not a known heading/ID.\n      return `${source}/${markdown}${fragment ? `#${fragment}` : \"\"}`;\n    }\n    if (resolved.endsWith(\".md\")) {\n      return `${source}/${resolved}${fragment ? `#${fragment}` : \"\"}`;\n    }\n    const base =\n      \"https://raw.githubusercontent.com/observablehq/plot/\" + `refs/tags/v${version}/docs/`;\n    return path.startsWith(\"/\")\n      ? new URL(`public${target}`, base).href\n      : new URL(target, `${base}${page}`).href;\n  }\n\n  const contents = pages\n    .flatMap((page) => [\n      `- [${page}](#${pageId(page)})`,\n      ...(sections.get(page) ?? []).map(\n        ({ title, id }) => `  - [${title.replace(/[[\\]]/g, \"\")}](#${id})`,\n      ),\n    ])\n    .join(\"\\n\");\n  const combined = pages\n    .map((page) => {\n      const headings = new Map(\n        (sections.get(page) ?? []).map((heading) => [heading.line, heading]),\n      );\n      const body = proseLines(documents.get(page) ?? \"\", (line, number) => {\n        const heading = headings.get(number);\n        // Inline code also remains verbatim. Plot's prose links have simple destinations.\n        line = line\n          .split(/(`+[^`]*`+)/g)\n          .map((part, index) => {\n            if (index % 2) return part;\n            return part\n              .replace(\n                /(\\]\\()([^\\s)]+)([^)]*\\))/g,\n                (_match: string, before: string, target: string, after: string) =>\n                  `${before}${link(target, page)}${after}`,\n              )\n              .replace(\n                /^( {0,3}\\[[^\\]]+\\]:\\s*)(\\S+)/,\n                (_match: string, before: string, target: string) =>\n                  `${before}${link(target, page)}`,\n              )\n              .replace(\n                /(?<!:)\\b(href|src)=([\"'])([^\"']+)\\2/g,\n                (_match: string, attr: string, quote: string, target: string) =>\n                  `${attr}=${quote}${link(target, page)}${quote}`,\n              )\n              .replace(\n                /\\bid=([\"'])([^\"']+)\\1/g,\n                (_match: string, quote: string, id: string) =>\n                  `id=${quote}${anchors.get(page)?.get(id) ?? id}${quote}`,\n              );\n          })\n          .join(\"\");\n        return heading\n          ? `<a id=\"${heading.id}\"></a>\\n\\n${line.replace(/\\s*\\{#[^}]+\\}/g, \"\")}`\n          : line;\n      });\n      return `<a id=\"${pageId(page)}\"></a>\\n\\n# ${page}\\n\\nSource: ${source}/${page}\\n\\n${body}`;\n    })\n    .join(\"\\n\\n---\\n\\n\");\n  return cleanPlotMarkdown(\n    `# Observable Plot ${version}\\n\\nPackage: \\`@observablehq/plot@${version}\\`. Source: [v${version}](${source}).\\n\\nThis reference combines selected upstream documentation for static charts and maps. Introductory and site pages, interaction helpers, and the Auto and Tip marks are omitted. Website controls are omitted; upstream setup and interactive templates are labeled as reference code. Use the table of contents to find API signatures and examples; links to omitted pages lead to the tagged upstream documentation.\\n\\n## Table of contents\\n\\n${contents}\\n\\n---\\n\\n${combined}\\n\\n<!-- setup-data-project:observable-plot:${version}:complete -->\\n`,\n  );\n}\n\nexport function proseLines(\n  content: string,\n  transform: (line: string, number: number) => string,\n): string {\n  let fence: { character: string; length: number } | undefined;\n  let script = false;\n  return content\n    .split(\"\\n\")\n    .map((line, number) => {\n      const marker = line.match(/^ {0,3}(`{3,}|~{3,})/);\n      if (fence) {\n        if (\n          marker?.[1][0] === fence.character &&\n          marker[1].length >= fence.length &&\n          /^ {0,3}(?:`+|~+)\\s*$/.test(line)\n        )\n          fence = undefined;\n        return line;\n      }\n      if (marker) {\n        fence = { character: marker[1][0], length: marker[1].length };\n        return line;\n      }\n      if (/^\\s*<script\\b/.test(line)) script = true;\n      if (script) {\n        if (/<\\/script>/.test(line)) script = false;\n        return line;\n      }\n      return transform(line, number);\n    })\n    .join(\"\\n\");\n}\n","// Static chart creation references. Keep this explicit so new upstream pages do\n// not silently expand the installed agent reference.\nexport const PLOT_DOC_PAGES: string[] = [\n  \"features/plots.md\",\n  \"features/marks.md\",\n  \"features/scales.md\",\n  \"features/projections.md\",\n  \"features/legends.md\",\n  \"features/facets.md\",\n  \"features/formats.md\",\n  \"features/curves.md\",\n  \"transforms/bin.md\",\n  \"transforms/group.md\",\n  \"transforms/stack.md\",\n  \"transforms/normalize.md\",\n  \"transforms/centroid.md\",\n  \"transforms/sort.md\",\n  \"marks/area.md\",\n  \"marks/arrow.md\",\n  \"marks/axis.md\",\n  \"marks/bar.md\",\n  \"marks/bollinger.md\",\n  \"marks/box.md\",\n  \"marks/cell.md\",\n  \"marks/contour.md\",\n  \"marks/delaunay.md\",\n  \"marks/density.md\",\n  \"marks/difference.md\",\n  \"marks/dot.md\",\n  \"marks/frame.md\",\n  \"marks/geo.md\",\n  \"marks/grid.md\",\n  \"marks/hexgrid.md\",\n  \"marks/image.md\",\n  \"marks/line.md\",\n  \"marks/linear-regression.md\",\n  \"marks/link.md\",\n  \"marks/raster.md\",\n  \"marks/rect.md\",\n  \"marks/rule.md\",\n  \"marks/text.md\",\n  \"marks/tick.md\",\n  \"marks/tree.md\",\n  \"marks/vector.md\",\n  \"marks/waffle.md\",\n].sort();\n","import { cleanPlotMarkdown } from \"./cleanPlotMarkdown.ts\";\nimport { posix } from \"node:path\";\nimport { proseLines } from \"./combinePlotDocs.ts\";\nimport { PLOT_DOC_PAGES } from \"./plotDocPages.ts\";\n\n// Split the cached format without changing code examples or heading anchors.\nexport function splitPlotDocs(reference: string, version: string): Map<string, string> {\n  const sections = [\n    ...reference.matchAll(\n      /<a id=\"(plot-[^\"]+)\"><\\/a>\\n\\n# ([^\\n]+\\.md)\\n\\nSource:\\s+([^\\s]+)\\n\\n/g,\n    ),\n  ];\n  const files = new Map<string, string>();\n  const anchors = new Map<string, string>();\n  const source = `https://github.com/observablehq/plot/tree/v${version}/docs`;\n  const completion = `<!-- setup-data-project:observable-plot:${version}:complete -->`;\n  if (!reference.trimEnd().endsWith(completion)) throw new Error(\"Incomplete Plot reference.\");\n  const end = reference.lastIndexOf(completion);\n  const licenseStart = reference.lastIndexOf(\"\\n## Upstream license\\n\", end);\n  for (let index = 0; index < sections.length; index++) {\n    const section = sections[index];\n    const page = section[2];\n    if (!PLOT_DOC_PAGES.includes(page) || files.has(page) || section[3] !== `${source}/${page}`)\n      throw new Error(`Invalid Plot page: ${page}`);\n    const body = reference\n      .slice(section.index, sections[index + 1]?.index ?? (licenseStart >= 0 ? licenseStart : end))\n      .trimEnd()\n      .replace(/\\n\\n---$/, \"\");\n    files.set(page, body);\n    proseLines(body, (line) => {\n      for (const match of line.matchAll(/\\bid=[\"']([^\"']+)[\"']/g)) anchors.set(match[1], page);\n      return line;\n    });\n  }\n  if (files.size !== PLOT_DOC_PAGES.length) throw new Error(\"Incomplete Plot pages.\");\n\n  for (const [page, body] of files) {\n    const link = (id: string) => {\n      const destination = anchors.get(id);\n      return destination && destination !== page\n        ? `${posix.relative(posix.dirname(page), destination)}#${id}`\n        : `#${id}`;\n    };\n    files.set(\n      page,\n      cleanPlotMarkdown(\n        proseLines(body, (line) =>\n          line\n            .split(/(`+[^`]*`+)/g)\n            .map((part, index) =>\n              index % 2\n                ? part\n                : part\n                    .replace(\n                      /(\\]\\()#([^\\s)]+)([^)]*\\))/g,\n                      (_match: string, before: string, id: string, after: string) =>\n                        `${before}${link(id)}${after}`,\n                    )\n                    .replace(\n                      /^( {0,3}\\[[^\\]]+\\]:\\s*)#(\\S+)/,\n                      (_match: string, before: string, id: string) => `${before}${link(id)}`,\n                    )\n                    .replace(\n                      /(?<!:)\\b(href|src)=([\"'])#([^\"']+)\\2/g,\n                      (_match: string, attr: string, quote: string, id: string) =>\n                        `${attr}=${quote}${link(id)}${quote}`,\n                    ),\n            )\n            .join(\"\"),\n        ),\n      ),\n    );\n  }\n  const license =\n    licenseStart >= 0\n      ? reference.slice(licenseStart + \"\\n## Upstream license\\n\".length, end).trim()\n      : undefined;\n  if (license) files.set(\"LICENSE\", license + \"\\n\");\n  const index =\n    `# Observable Plot ${version}\\n\\n> Selected documentation for static charts and maps. Start here, then read the relevant pages.\\n\\n[Versioned upstream documentation](${source})${license ? \" · [License](./LICENSE)\" : \"\"}\\n\\n` +\n    [\"features\", \"marks\", \"transforms\"]\n      .map(\n        (group) =>\n          `## ${group[0].toUpperCase() + group.slice(1)}\\n\\n` +\n          PLOT_DOC_PAGES.filter((page) => page.startsWith(`${group}/`))\n            .map((page) => `- [${page}](./${page})`)\n            .join(\"\\n\"),\n      )\n      .join(\"\\n\\n\") +\n    \"\\n\";\n  files.set(\"llms.txt\", index);\n  return files;\n}\n","import { log } from \"@clack/prompts\";\nimport { existsSync, mkdirSync, mkdtempSync, renameSync, rmSync, writeFileSync } from \"node:fs\";\nimport { dirname, join } from \"node:path\";\nimport { splitPlotDocs } from \"./splitPlotDocs.ts\";\nimport { combinePlotDocs } from \"./combinePlotDocs.ts\";\nimport { PLOT_DOC_PAGES } from \"./plotDocPages.ts\";\nimport type { PackageDocs } from \"./fetchPackageDocs.ts\";\n\n// Replace local documentation only after every page is ready.\nexport async function fetchPlotDocs(\n  version: string,\n  options: { preferStored?: boolean } = {},\n): Promise<PackageDocs> {\n  const tag = `v${version}`;\n  const directory = join(\"docs\", \"observable-plot\");\n  try {\n    let llm: string | undefined;\n    if (options.preferStored !== false) {\n      try {\n        const response = await fetch(\n          \"https://raw.githubusercontent.com/nshiab/setup-data-project/\" +\n            `refs/heads/main/docs-cache/observable-plot/${version}/llm.md`,\n        );\n        if (response.ok) {\n          const cached = await response.text();\n          if (isStoredReference(cached, version)) llm = cached;\n        }\n      } catch {\n        // A cache is an optimization. An unavailable cache never blocks the tag.\n      }\n    }\n    if (llm === undefined) llm = await generatePlotReference(version);\n    const files = splitPlotDocs(llm, version);\n    mkdirSync(\"docs\", { recursive: true });\n    const staging = mkdtempSync(join(\"docs\", \".plot-\"));\n    const contents = join(staging, \"contents\");\n    const backup = join(staging, \"previous\");\n    try {\n      for (const [page, content] of files) {\n        const path = join(contents, page);\n        mkdirSync(dirname(path), { recursive: true });\n        writeFileSync(path, content);\n      }\n      if (existsSync(directory)) renameSync(directory, backup);\n      try {\n        renameSync(contents, directory);\n      } catch (error) {\n        if (existsSync(backup)) renameSync(backup, directory);\n        throw error;\n      }\n    } finally {\n      rmSync(staging, { recursive: true, force: true });\n    }\n    return { llm, index: files.get(\"llms.txt\"), plot: { version, pages: [...PLOT_DOC_PAGES] } };\n  } catch (error) {\n    log.warn(\n      `Could not fetch complete Observable Plot documentation for ${tag}. ` +\n        \"Existing files were preserved, but may not match the installed \" +\n        \"version. Resolve the refresh failure before using this reference. \" +\n        String(error),\n    );\n    return {};\n  }\n}\n\nexport async function generatePlotReference(version: string): Promise<string> {\n  if (!/^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?$/.test(version))\n    throw new Error(\"An exact Plot version is required.\");\n  const tag = `v${version}`;\n  const pages = PLOT_DOC_PAGES;\n  const documents = new Map<string, string>();\n  const failed: string[] = [];\n  // Fetch in small batches to avoid overwhelming GitHub on the first run.\n  for (let offset = 0; offset < pages.length; offset += 8) {\n    await Promise.all(\n      pages.slice(offset, offset + 8).map(async (page) => {\n        try {\n          const url =\n            \"https://raw.githubusercontent.com/observablehq/plot/\" +\n            `refs/tags/${tag}/docs/${page}`;\n          const response = await fetch(url);\n          if (!response.ok) throw new Error(`HTTP ${response.status}`);\n          const content = await response.text();\n          documents.set(page, content);\n        } catch {\n          failed.push(page);\n        }\n      }),\n    );\n  }\n\n  if (failed.length > 0) {\n    throw new Error(`Could not fetch ${failed.length} Markdown pages`);\n  }\n  const response = await fetch(\n    `https://raw.githubusercontent.com/observablehq/plot/refs/tags/${tag}/LICENSE`,\n  );\n  if (!response.ok) throw new Error(`Could not fetch Plot's license: HTTP ${response.status}`);\n  const license = await response.text();\n  const completion = `<!-- setup-data-project:observable-plot:${version}:complete -->`;\n  return combinePlotDocs(version, documents).replace(\n    completion,\n    `## Upstream license\\n\\n${license.trim()}\\n\\n${completion}`,\n  );\n}\n\nfunction isStoredReference(content: string, version: string): boolean {\n  const source = `https://github.com/observablehq/plot/tree/v${version}/docs`;\n  const metadata = content.split(/\\n\\s*\\n/)[1]?.replace(/\\s+/g, \" \");\n  if (\n    !content.startsWith(`# Observable Plot ${version}\\n\\n`) ||\n    metadata !== `Package: \\`@observablehq/plot@${version}\\`. Source: [v${version}](${source}).` ||\n    !content.trimEnd().endsWith(`<!-- setup-data-project:observable-plot:${version}:complete -->`)\n  )\n    return false;\n\n  // Match actual page sections, not TOC entries. Require every selected page\n  // exactly once and some upstream heading/content after its source record.\n  const sections = [\n    ...content.matchAll(/<a id=\"(plot-[^\"]+)\"><\\/a>\\n\\n# ([^\\n]+\\.md)\\n\\nSource:\\s+([^\\s]+)\\n\\n/g),\n  ];\n  if (sections.length !== PLOT_DOC_PAGES.length) return false;\n  const found = new Set<string>();\n  for (let index = 0; index < sections.length; index++) {\n    const section = sections[index];\n    const page = section[2];\n    const id = `plot-${page.replace(/\\.md$/, \"\").replaceAll(\"/\", \"--\")}`;\n    if (\n      !PLOT_DOC_PAGES.includes(page) ||\n      found.has(page) ||\n      section[1] !== id ||\n      section[3] !== `${source}/${page}`\n    )\n      return false;\n    const body = content.slice(section.index + section[0].length, sections[index + 1]?.index);\n    if (!/^#{1,6}\\s+\\S/m.test(body)) return false;\n    found.add(page);\n  }\n  return true;\n}\n","import { log } from \"@clack/prompts\";\nimport { fetchPackageDocs, type PackageDocs } from \"./fetchPackageDocs.ts\";\nimport { fetchPlotDocs } from \"./fetchPlotDocs.ts\";\nimport { getInstalledPackageConfigs } from \"./packageRegistry.ts\";\nexport async function syncPackageDocs(\n  installedPackages: string[],\n  installedVersions: Record<string, string>,\n): Promise<Record<string, PackageDocs>> {\n  const mapping: Record<string, PackageDocs> = {};\n  for (const pkg of getInstalledPackageConfigs(installedPackages)) {\n    const version = installedVersions[pkg.value];\n    if (!version) {\n      log.warn(\n        `Could not determine the installed version of ${pkg.value}. Install the project dependencies, then run the docs script again. Existing documentation may be stale.`,\n      );\n      continue;\n    }\n    const docs =\n      pkg.value === \"@observablehq/plot\"\n        ? await fetchPlotDocs(version)\n        : await fetchPackageDocs(pkg.value, version);\n    if (docs.index !== undefined || docs.plot) mapping[pkg.value] = docs;\n  }\n  return mapping;\n}\n","import { existsSync, readFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { isObject } from \"./jsonObject.ts\";\nexport function getInstalledPackageVersions(\n  packageSpecifiers: Record<string, string>,\n): Record<string, string> {\n  const versions: Record<string, string> = {};\n  for (const pkg of Object.keys(packageSpecifiers)) {\n    const path = join(\"node_modules\", pkg, \"package.json\");\n    if (!existsSync(path)) continue;\n    const config: unknown = JSON.parse(readFileSync(path, \"utf8\"));\n    if (\n      isObject(config) &&\n      typeof config.version === \"string\" &&\n      /^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/.test(config.version)\n    )\n      versions[pkg] = config.version;\n  }\n  return versions;\n}\n","import { SUPPORTED_PACKAGES } from \"./packageRegistry.ts\";\n\nexport interface CliOptions {\n  help: boolean;\n  docs: boolean;\n  packages: string[];\n}\n\nconst packageFlags = new Map(\n  SUPPORTED_PACKAGES.map((pkg) => [\n    `--${pkg.label.replace(/^simple-data-analysis/, \"sda\").replace(/^journalism-/, \"\")}`,\n    pkg.value,\n  ]),\n);\n\nexport const CLI_HELP = `Usage: setup-data-project [library flags | --docs] [--help]\n\n${Array.from(packageFlags, ([flag, pkg]) => `  ${flag.padEnd(16)} Select ${pkg}.`).join(\"\\n\")}\n  --docs            Refresh documentation only for installed libraries.\n  -h, --help        Show this help and exit.\n\nWithout a package flag, choose packages interactively.\nCombine package flags to select libraries without prompting.\nPackage flags keep existing versions and still set up project files and docs.`;\n\nexport function parseArguments(args: string[]): CliOptions {\n  const options: CliOptions = { help: false, docs: false, packages: [] };\n\n  for (const arg of args) {\n    const pkg = packageFlags.get(arg);\n    if (arg === \"--help\" || arg === \"-h\") {\n      options.help = true;\n    } else if (arg === \"--docs\") {\n      options.docs = true;\n    } else if (pkg) {\n      if (!options.packages.includes(pkg)) options.packages.push(pkg);\n    } else {\n      throw new Error(`Unknown argument: ${arg}. Use --help for usage.`);\n    }\n  }\n\n  if (options.docs && options.packages.length > 0)\n    throw new Error(\"--docs cannot be combined with package flags.\");\n  return options;\n}\n","#!/usr/bin/env node\nimport { cancel, intro, isCancel, multiselect, outro, select, spinner } from \"@clack/prompts\";\nimport process from \"node:process\";\nimport { execFileSync } from \"node:child_process\";\n\nimport { getRuntime } from \"./helpers/getRuntime.ts\";\nimport { PACKAGE_OPTIONS } from \"./helpers/packageOptions.ts\";\nimport { ensureGitignore } from \"./helpers/ensureGitignore.ts\";\nimport { ensureReadme } from \"./helpers/ensureReadme.ts\";\nimport { ensureTooling } from \"./helpers/ensureTooling.ts\";\nimport { ensureVscode } from \"./helpers/ensureVscode.ts\";\nimport { runPackageManager, installPackages } from \"./helpers/installPackages.ts\";\nimport { getProjectTasks } from \"./helpers/getProjectTasks.ts\";\nimport { createFolderStructure } from \"./helpers/createFolderStructure.ts\";\nimport { ensureEnvFile } from \"./helpers/ensureEnvFile.ts\";\nimport { ensureAgents } from \"./helpers/ensureAgents.ts\";\nimport { getInstalledPackageConfigs } from \"./helpers/packageRegistry.ts\";\nimport { ProjectManifest } from \"./helpers/projectManifest.ts\";\nimport { syncPackageDocs } from \"./helpers/syncPackageDocs.ts\";\nimport { getInstalledPackageVersions } from \"./helpers/getInstalledPackageVersions.ts\";\nimport { CLI_HELP, parseArguments } from \"./helpers/parseArguments.ts\";\n\nasync function main() {\n  const cliOptions = parseArguments(process.argv.slice(2));\n  if (cliOptions.help) {\n    console.log(CLI_HELP);\n    return;\n  }\n\n  const runtime = getRuntime();\n  const projectManifest = ProjectManifest.open();\n  if (cliOptions.docs) {\n    await refreshDocs(projectManifest);\n    return;\n  }\n  console.log();\n  intro(`Hi! 👋 (Running on ${runtime})`);\n\n  const installedPackages = projectManifest.getInstalledPackages();\n  const options = PACKAGE_OPTIONS.map((opt) => ({\n    ...opt,\n    label: installedPackages.includes(opt.value)\n      ? `${opt.label} \\x1b[2m(installed)\\x1b[22m`\n      : opt.label,\n  }));\n\n  const selectedPackages =\n    cliOptions.packages.length > 0\n      ? cliOptions.packages\n      : await multiselect({\n          message:\n            \"Which libraries would you like to install?\\n\\x1b[2m(space to select, arrows to navigate, enter to confirm)\\x1b[22m\\n\",\n          options,\n          required: false,\n        });\n\n  if (isCancel(selectedPackages)) {\n    cancel(\"Installation cancelled.\");\n    process.exit(0);\n  }\n\n  const alreadyInstalled = selectedPackages.filter((pkg) => installedPackages.includes(pkg));\n\n  const packagesToInstall: string[] = [];\n\n  for (const pkg of selectedPackages) {\n    if (alreadyInstalled.includes(pkg)) {\n      if (cliOptions.packages.length > 0) continue;\n\n      const action = await select({\n        message: `${pkg} is already installed. What would you like to do?`,\n        options: [\n          { value: \"skip\", label: \"Keep existing version\" },\n          { value: \"update\", label: \"Update to latest\" },\n        ],\n      });\n\n      if (isCancel(action)) {\n        cancel(\"Installation cancelled.\");\n        process.exit(0);\n      }\n\n      if (action === \"update\") {\n        packagesToInstall.push(pkg);\n      }\n    } else {\n      packagesToInstall.push(pkg);\n    }\n  }\n\n  projectManifest.updateTasks(getProjectTasks(runtime));\n\n  const sInstall = spinner();\n  sInstall.start(\"Installing packages...\");\n\n  try {\n    await installPackages(packagesToInstall);\n    projectManifest.reload();\n    const declared = projectManifest.getInstalledPackageSpecifiers();\n    if (\n      projectManifest\n        .getInstalledPackages()\n        .some((pkg) =>\n          [\"@nshiab/simple-data-analysis\", \"@nshiab/journalism-dataviz\"].includes(pkg),\n        ) &&\n      !declared[\"@observablehq/plot\"]\n    ) {\n      await installPackages([\"@observablehq/plot\"]);\n      projectManifest.reload();\n    }\n    await ensureTooling(projectManifest);\n    // Reinstall declared dependencies when a project was cloned without node_modules.\n    projectManifest.reload();\n    const versions = getInstalledPackageVersions(projectManifest.getInstalledPackageSpecifiers());\n    if (projectManifest.getInstalledPackages().some((pkg) => !versions[pkg]))\n      await runPackageManager([\"install\"]);\n  } catch (error) {\n    sInstall.stop(\"Package installation failed.\");\n    throw error;\n  }\n  sInstall.stop(\"Packages installed.\");\n\n  projectManifest.reload();\n  const finalInstalledPackages = getInstalledPackageConfigs(\n    projectManifest.getInstalledPackages(),\n  ).map((pkg) => pkg.value);\n  const docsMapping = await refreshDocs(projectManifest);\n\n  const sConfig = spinner();\n  sConfig.start(\"Preparing project files and configuration...\");\n  try {\n    projectManifest.updateTasks(getProjectTasks());\n    execFileSync(process.execPath, [\"node_modules/vite-plus/bin/vp\", \"fmt\", \"package.json\"], {\n      stdio: \"pipe\",\n    });\n\n    createFolderStructure(finalInstalledPackages);\n    ensureGitignore();\n    ensureEnvFile();\n    ensureVscode();\n    ensureReadme(runtime, finalInstalledPackages);\n    ensureAgents(docsMapping, runtime, finalInstalledPackages);\n  } catch (error) {\n    sConfig.stop(\"Project configuration failed.\");\n    throw error;\n  }\n  sConfig.stop(\"Project files and configuration ready.\");\n\n  outro(\n    process.exitCode\n      ? \"Project setup complete; documentation needs attention.\"\n      : \"You are all set! 🙌\",\n  );\n}\n\nasync function refreshDocs(manifest: ProjectManifest) {\n  const packages = getInstalledPackageConfigs(manifest.getInstalledPackages()).map(\n    (pkg) => pkg.value,\n  );\n  const sDocs = spinner();\n  sDocs.start(\"Downloading documentation...\");\n  try {\n    const mapping = await syncPackageDocs(\n      packages,\n      getInstalledPackageVersions(manifest.getInstalledPackageSpecifiers()),\n    );\n    if (Object.keys(mapping).length !== packages.length) {\n      sDocs.stop(\"Documentation incomplete. 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+{"version":3,"file":"main.mjs","names":["process","metadata.name","metadata.version","metadata.version","process"],"sources":["../src/helpers/getRuntime.ts","../src/helpers/packageRegistry.ts","../src/helpers/packageOptions.ts","../src/helpers/gitignoreEntries.ts","../src/helpers/ensureGitignore.ts","../src/helpers/ensureManagedSection.ts","../src/helpers/ensureReadme.ts","../src/helpers/installPackages.ts","../package.json","../src/helpers/ensureTooling.ts","../src/helpers/ensureVscode.ts","../src/helpers/getProjectTasks.ts","../src/helpers/createFolderStructure.ts","../src/helpers/ensureEnvFile.ts","../src/helpers/ensureAgents.ts","../src/helpers/projectManifest.ts","../src/helpers/fetchPackageDocs.ts","../src/helpers/cleanPlotMarkdown.ts","../src/helpers/combinePlotDocs.ts","../src/helpers/plotDocPages.ts","../src/helpers/splitPlotDocs.ts","../src/helpers/fetchPlotDocs.ts","../src/helpers/syncPackageDocs.ts","../src/helpers/getInstalledPackageVersions.ts","../src/helpers/parseArguments.ts","../src/main.ts"],"sourcesContent":["import process from \"node:process\";\nexport type Runtime = \"node\" | \"bun\";\nexport function getRuntime(versions: { bun?: string; node?: string } = process.versions): Runtime {\n  return versions.bun ? \"bun\" : \"node\";\n}\n","export interface PackageConfig {\n  value: string;\n  label: string;\n  type: \"sda\" | \"journalism\" | \"other\";\n  hint?: string;\n}\n\nexport const SUPPORTED_PACKAGES: PackageConfig[] = [\n  {\n    value: \"@nshiab/simple-data-analysis\",\n    label: \"simple-data-analysis\",\n    type: \"sda\",\n    hint: \"All the core functionality, plus methods for dataviz, AI, Google sheets, etc.\",\n  },\n  {\n    value: \"@nshiab/simple-data-analysis-core\",\n    label: \"simple-data-analysis-core\",\n    type: \"sda\",\n    hint: \"No fluff. Great for constrained environments, like a cheap server.\",\n  },\n  {\n    value: \"@nshiab/journalism-ai\",\n    label: \"journalism-ai\",\n    type: \"journalism\",\n    hint: \"Easily use AI local models with Ollama or remote models with Gemini/Vertex.\",\n  },\n  {\n    value: \"@nshiab/journalism-google\",\n    label: \"journalism-google\",\n    type: \"journalism\",\n    hint: \"Push and retrieve data from Google Sheets, Google Bucket, and more.\",\n  },\n  {\n    value: \"@nshiab/journalism-web-scraping\",\n    label: \"journalism-web-scraping\",\n    type: \"journalism\",\n    hint: \"Retrieve data from Statistics Canada tables, HTML table, download files...\",\n  },\n  {\n    value: \"@nshiab/journalism-finance\",\n    label: \"journalism-finance\",\n    type: \"journalism\",\n    hint: \"Retrieve financial data, calculate Canadian mortgage payments and taxes...\",\n  },\n  {\n    value: \"@nshiab/journalism-format\",\n    label: \"journalism-format\",\n    type: \"journalism\",\n    hint: \"Easily format dates, numbers, currencies...\",\n  },\n  {\n    value: \"@nshiab/journalism-climate\",\n    label: \"journalism-climate\",\n    type: \"journalism\",\n    hint: \"Retrieve data from Environment Canada APIs and more.\",\n  },\n  {\n    value: \"@nshiab/journalism-dataviz\",\n    label: \"journalism-dataviz\",\n    type: \"journalism\",\n    hint: \"Render charts/maps with Observable Plot or directly in the terminal.\",\n  },\n  {\n    value: \"@nshiab/journalism-geo\",\n    label: \"journalism-geo\",\n    type: \"journalism\",\n    hint: \"Calculate distances, transform 2D coordinates to 3D, wrangle GeoTIFF files...\",\n  },\n  {\n    value: \"@nshiab/journalism-statistics\",\n    label: \"journalism-statistics\",\n    type: \"journalism\",\n    hint: \"Functions for statistical tests, clustering, random path generation...\",\n  },\n  {\n    value: \"@nshiab/journalism-web\",\n    label: \"journalism-web\",\n    type: \"journalism\",\n    hint: \"Web related functions, including downloading data as CSV, extracting ZIP files to URLs...\",\n  },\n  {\n    value: \"@nshiab/journalism-extras\",\n    label: \"journalism-extras\",\n    type: \"journalism\",\n    hint: \"Functions to zip/unzip, sleep, reencode files, create nested directories...\",\n  },\n];\n\n// Plot is installed alongside charting libraries, but is not a setup menu option.\nexport const DOCUMENTED_PACKAGES: PackageConfig[] = [\n  ...SUPPORTED_PACKAGES,\n  { value: \"@nshiab/journalism\", label: \"journalism\", type: \"journalism\" },\n  { value: \"@observablehq/plot\", label: \"Observable Plot\", type: \"other\" },\n];\n\nexport function getInstalledPackageConfigs(installedPackages: string[]): PackageConfig[] {\n  const installedSet = new Set(installedPackages);\n  return DOCUMENTED_PACKAGES.filter((pkg) => installedSet.has(pkg.value));\n}\n","import { SUPPORTED_PACKAGES } from \"./packageRegistry.ts\";\n\nexport const PACKAGE_OPTIONS = SUPPORTED_PACKAGES.map((pkg) => ({\n  value: pkg.value,\n  label: pkg.label,\n  hint: pkg.hint,\n}));\n","export const GITIGNORE_ENTRIES = [\n  \"node_modules\",\n  \"docs/\",\n  \".tmp\",\n  \".sda-cache\",\n  \"sda/.sda.pid\",\n  \"sda/.sda-lock/\",\n  \".journalism-cache\",\n  \"sda/data\",\n  \"sda/output\",\n  \".env\",\n  \".DS_Store\",\n];\n","import { lstatSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { GITIGNORE_ENTRIES } from \"./gitignoreEntries.ts\";\n\nexport const GITIGNORE_SENTINEL = \"# Added by setup-data-project. Do not remove this line.\";\n\nexport function ensureGitignore() {\n  const path = \".gitignore\";\n  const stats = lstatSync(path, { throwIfNoEntry: false });\n\n  if (stats?.isSymbolicLink()) {\n    return;\n  }\n\n  const content = stats === undefined ? \"\" : readFileSync(path, \"utf-8\");\n  const hasSentinel = content.split(\"\\n\").some((line) => line.trim() === GITIGNORE_SENTINEL);\n\n  if (hasSentinel) {\n    const entries = new Set(content.split(\"\\n\").map((line) => line.trim()));\n    const missing = GITIGNORE_ENTRIES.filter((entry) => !entries.has(entry));\n    if (missing.length)\n      writeFileSync(\n        path,\n        content + (content.endsWith(\"\\n\") ? \"\" : \"\\n\") + missing.join(\"\\n\") + \"\\n\",\n      );\n    return;\n  }\n\n  const separator = content === \"\" ? \"\" : content.endsWith(\"\\n\") ? \"\\n\" : \"\\n\\n\";\n  const block = `${GITIGNORE_SENTINEL}\\n${GITIGNORE_ENTRIES.join(\"\\n\")}\\n`;\n  writeFileSync(path, content + separator + block);\n}\n","import { existsSync, readFileSync, writeFileSync } from \"node:fs\";\n\ninterface ManagedSectionOptions {\n  path: string;\n  name: string;\n  content: string;\n  createContent: (section: string) => string;\n}\n\nexport function ensureManagedSection(\n  options: ManagedSectionOptions,\n): \"created\" | \"updated\" | \"unchanged\" | \"missing-markers\" {\n  const startMarker = `<!-- setup-data-project:${options.name}:start / Safe to remove if you don't want this generated section. -->`;\n  const endMarker = `<!-- setup-data-project:${options.name}:end / End of generated section. -->`;\n  const trimmedContent = options.content.trim();\n  const section =\n    trimmedContent === \"\"\n      ? `${startMarker}\\n${endMarker}`\n      : `${startMarker}\\n\\n${trimmedContent}\\n\\n${endMarker}`;\n\n  if (!existsSync(options.path)) {\n    writeFileSync(options.path, ensureFinalNewline(options.createContent(section)));\n    return \"created\";\n  }\n\n  const currentContent = readFileSync(options.path, \"utf-8\");\n  const start = new RegExp(\n    `<!-- setup-data-project:${options.name}:start(?: / [^\\\\r\\\\n]*?)? -->`,\n  ).exec(currentContent);\n  const end = new RegExp(`<!-- setup-data-project:${options.name}:end(?: / [^\\\\r\\\\n]*?)? -->`).exec(\n    currentContent,\n  );\n\n  if (!start || !end || end.index < start.index + start[0].length) {\n    return \"missing-markers\";\n  }\n\n  const nextContent =\n    currentContent.slice(0, start.index) +\n    section +\n    currentContent.slice(end.index + end[0].length);\n\n  if (nextContent === currentContent) {\n    return \"unchanged\";\n  }\n\n  writeFileSync(options.path, ensureFinalNewline(nextContent));\n  return \"updated\";\n}\n\nfunction ensureFinalNewline(content: string): string {\n  return content.endsWith(\"\\n\") ? content : content + \"\\n\";\n}\n","import { ensureManagedSection } from \"./ensureManagedSection.ts\";\nimport { getInstalledPackageConfigs } from \"./packageRegistry.ts\";\nimport type { Runtime } from \"./getRuntime.ts\";\nexport function ensureReadme(runtime: Runtime, installedPackages: string[] = []) {\n  const run = runtime === \"bun\" ? \"bun run\" : \"npm run\";\n  const libraries = getInstalledPackageConfigs(installedPackages)\n    .map((pkg) => `\\`${pkg.value}\\``)\n    .join(\", \");\n  ensureManagedSection({\n    path: \"README.md\",\n    name: \"libraries\",\n    createContent: (section) =>\n      `# Data project\\n\\nCreated with [setup-data-project](https://github.com/nshiab/setup-data-project).\\n\\n${section}`,\n    content: `${libraries ? `Installed libraries: ${libraries}.\\n\\n` : \"\"}Use sda/main.ts to process source data from sda/data/ and write results to sda/output/. Both data folders are ignored by Git. Put reusable helpers in sda/helpers/ and tests in sda/test/.\n\n- \\`${run} sda\\`: run \\`${run} fix\\`, then run the analysis once if checks pass.\n- \\`${run} sda:watch\\`: do the same on changes to sda/ and .env, excluding sda/output/.\n- \\`${run} sda:status\\`: check whether an SDA run or watcher is active.\n- \\`${run} all-tests\\`: check formatting, lint, and TypeScript types. When adding tests, extend this script to run them after the existing checks.\n- \\`${run} fix\\`: format files, apply automatic lint fixes, and check types.\n- \\`${run} docs\\`: refresh documentation for the installed library versions.\n- \\`${run} clean\\`: delete cached results and temporary files in .sda-cache/, .journalism-cache/, and .tmp/.\n\nSDA blocks simultaneous runs. Recovery after a forced termination is best effort.\n\nIn VS Code, install the recommended Oxc extension for formatting and linting. Generated .vscode/settings.json enables formatting and lint fixes on save, plus visual line wrapping. Existing VS Code configuration files are preserved.\n\nThe generated docs/ folder is ignored by Git. Refresh it after cloning or updating dependencies. See AGENTS.md for documentation pointers.`,\n  });\n}\n","import { execFile } from \"node:child_process\";\nimport { getRuntime } from \"./getRuntime.ts\";\nexport function runPackageManager(args: string[]): Promise<void> {\n  const command = getRuntime() === \"bun\" ? \"bun\" : process.platform === \"win32\" ? \"npm.cmd\" : \"npm\";\n  return new Promise((resolve, reject) => {\n    execFile(\n      command,\n      args,\n      { maxBuffer: 10 * 1024 * 1024, shell: process.platform === \"win32\" },\n      (error, stdout, stderr) => {\n        if (error)\n          reject(\n            new Error(`${command} ${args.join(\" \")} failed.\\n${stderr || stdout}`, {\n              cause: error,\n            }),\n          );\n        else resolve();\n      },\n    );\n  });\n}\nexport async function installPackages(\n  packages: string[],\n  options: { development?: boolean } = {},\n): Promise<void> {\n  if (packages.length === 0) return;\n  const bun = getRuntime() === \"bun\";\n  await runPackageManager([\n    bun ? \"add\" : \"install\",\n    ...(options.development ? (bun ? [\"--dev\"] : [\"--save-dev\"]) : []),\n    ...packages,\n  ]);\n}\n","","import { existsSync, writeFileSync } from \"node:fs\";\nimport { ProjectManifest } from \"./projectManifest.ts\";\nimport { getRuntime } from \"./getRuntime.ts\";\nimport { installPackages } from \"./installPackages.ts\";\nimport metadata from \"../../package.json\" with { type: \"json\" };\nconst tools = [\"oxfmt\", \"oxlint\", \"oxlint-tsgolint\", \"@types/node\"];\nexport async function ensureTooling(manifest: ProjectManifest): Promise<void> {\n  const runtime = getRuntime();\n  const runtimeTools = runtime === \"bun\" ? [...tools, \"@types/bun\"] : tools;\n  const installed = manifest.getInstalledPackages();\n  await installPackages(\n    [\n      ...runtimeTools.filter((pkg) => !installed.includes(pkg)).map((pkg) => `${pkg}@latest`),\n      ...(installed.includes(metadata.name) ? [] : [`${metadata.name}@${metadata.version}`]),\n    ],\n    { development: true },\n  );\n  if (\n    ![\".oxlintrc.json\", \".oxlintrc.jsonc\", \"oxlint.config.ts\", \"oxlint.config.mts\"].some((file) =>\n      existsSync(file),\n    )\n  ) {\n    writeFileSync(\n      \".oxlintrc.json\",\n      `{\n  \"options\": { \"typeAware\": true, \"typeCheck\": true }\n}\n`,\n    );\n  }\n  if (\n    [\".oxfmtrc.json\", \".oxfmtrc.jsonc\", \"oxfmt.config.ts\", \"oxfmt.config.mts\"].every(\n      (file) => !existsSync(file),\n    )\n  )\n    writeFileSync(\n      \".oxfmtrc.json\",\n      `{\n  \"ignorePatterns\": [\"docs/**\", \"sda/data/**\", \"sda/output/**\"]\n}\n`,\n    );\n  if (!existsSync(\"tsconfig.json\"))\n    writeFileSync(\n      \"tsconfig.json\",\n      `{\n  \"compilerOptions\": {\n    \"target\": \"ES2023\",\n    \"module\": \"NodeNext\",\n    \"strict\": true,\n    \"noEmit\": true,\n    \"allowImportingTsExtensions\": true,\n    \"erasableSyntaxOnly\": ${runtime === \"node\"},\n    \"types\": ${runtime === \"bun\" ? '[\"node\", \"bun\"]' : '[\"node\"]'},\n    \"skipLibCheck\": true\n  },\n  \"include\": [\"sda/**/*.ts\"]\n}\n`,\n    );\n}\n","import { existsSync, mkdirSync, writeFileSync } from \"node:fs\";\n\nexport function ensureVscode(): void {\n  mkdirSync(\".vscode\", { recursive: true });\n  const formatter = \"oxc.oxc-vscode\";\n  const files = {\n    \"extensions.json\": `{\n  \"recommendations\": [\"oxc.oxc-vscode\"]\n}\n`,\n    \"settings.json\": `${JSON.stringify(\n      {\n        \"editor.defaultFormatter\": formatter,\n        \"[javascript]\": { \"editor.defaultFormatter\": formatter },\n        \"[javascriptreact]\": { \"editor.defaultFormatter\": formatter },\n        \"[typescript]\": { \"editor.defaultFormatter\": formatter },\n        \"[typescriptreact]\": { \"editor.defaultFormatter\": formatter },\n        \"oxc.disableNestedConfig\": true,\n        \"oxc.fmt.disableNestedConfig\": true,\n        \"editor.formatOnSave\": true,\n        \"editor.formatOnSaveMode\": \"file\",\n        \"editor.codeActionsOnSave\": { \"source.fixAll.oxc\": \"explicit\" },\n        \"editor.wordWrap\": \"on\",\n      },\n      null,\n      2,\n    )}\\n`,\n  };\n  for (const [name, config] of Object.entries(files)) {\n    const path = `.vscode/${name}`;\n    if (!existsSync(path)) writeFileSync(path, config);\n  }\n}\n","import { getRuntime, type Runtime } from \"./getRuntime.ts\";\nimport metadata from \"../../package.json\" with { type: \"json\" };\nexport function getProjectTasks(runtime: Runtime = getRuntime()) {\n  const fmt = runtime === \"bun\" ? \"bun run --bun oxfmt\" : \"oxfmt\";\n  const lint = `${runtime === \"bun\" ? \"bun run --bun oxlint\" : \"oxlint\"} --type-aware --type-check`;\n  const runner = runtime === \"bun\" ? \"bun run --bun --no-env-file sda-run\" : \"sda-run\";\n  return {\n    sda: `${runner} sda/main.ts`,\n    \"sda:watch\": `${runner} --watch sda/main.ts sda .env --ignore sda/output`,\n    \"sda:status\": `${runner} --status`,\n    \"all-tests\": `${fmt} --check && ${lint}`,\n    clean: \"rm -rf .sda-cache .journalism-cache .tmp\",\n    fix: `${fmt} --write && ${lint} --fix`,\n    docs: `${runtime === \"bun\" ? \"bunx --bun\" : \"npx\"} @nshiab/setup-data-project@${metadata.version} --docs`,\n  };\n}\n","import { existsSync, lstatSync, mkdirSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\n\nexport function createFolderStructure(selectedPackages: string[]) {\n  const sdaFolder = \"sda\";\n  const folders = [\"data\", \"helpers\", \"output\"];\n\n  if (!existsSync(sdaFolder)) {\n    mkdirSync(sdaFolder, { recursive: true });\n  }\n\n  for (const folder of folders) {\n    const path = join(sdaFolder, folder);\n    if (!existsSync(path)) {\n      mkdirSync(path, { recursive: true });\n    }\n  }\n\n  const mainTsPath = join(sdaFolder, \"main.ts\");\n\n  let mainTsContent = 'console.log(\"Hello simple-data-analysis!\");\\n';\n\n  if (\n    selectedPackages.includes(\"@nshiab/simple-data-analysis\") ||\n    selectedPackages.includes(\"@nshiab/simple-data-analysis-core\")\n  ) {\n    const pkg = selectedPackages.includes(\"@nshiab/simple-data-analysis\")\n      ? \"@nshiab/simple-data-analysis\"\n      : \"@nshiab/simple-data-analysis-core\";\n    mainTsContent = `import { SimpleDB } from \"${pkg}\";\n\nconst sdb = new SimpleDB();\nconst table = sdb.newTable();\n\nawait table.loadArray([{ message: \"Hello simple-data-analysis!\" }]).log();\n\nawait sdb.close();\n`;\n  }\n\n  if (lstatSync(mainTsPath, { throwIfNoEntry: false }) === undefined) {\n    writeFileSync(mainTsPath, mainTsContent);\n  }\n\n  return sdaFolder;\n}\n","import { lstatSync, writeFileSync } from \"node:fs\";\n\nexport function ensureEnvFile() {\n  if (lstatSync(\".env\", { throwIfNoEntry: false }) === undefined) {\n    writeFileSync(\".env\", \"\");\n  }\n}\n","import type { PackageDocs } from \"./fetchPackageDocs.ts\";\nimport { ensureManagedSection } from \"./ensureManagedSection.ts\";\nimport { getInstalledPackageConfigs } from \"./packageRegistry.ts\";\nimport type { Runtime } from \"./getRuntime.ts\";\nexport function ensureAgents(\n  docsMapping: Record<string, PackageDocs>,\n  runtime: Runtime,\n  installedPackages: string[] = Object.keys(docsMapping),\n) {\n  const run = runtime === \"bun\" ? \"bun run\" : \"npm run\";\n  const links = getInstalledPackageConfigs(installedPackages).map((pkg) => {\n    if (pkg.value === \"@observablehq/plot\")\n      return `- Observable Plot charts and maps: start at \\`docs/observable-plot/llms.txt\\`, then read the relevant pages for use with writeChart and writeMap.`;\n    return `- \\`${pkg.value}\\`: start at \\`docs/${pkg.value.slice(\"@nshiab/\".length)}/llms.txt\\`, then read the relevant API pages and examples.`;\n  });\n  ensureManagedSection({\n    path: \"AGENTS.md\",\n    name: \"agents\",\n    createContent: (section) => section,\n    content: `Read README.md for project guidance and package.json for the installed libraries and scripts. Use the installed libraries. Ask the user before adding a dependency.\n\n${links.length ? `Documentation for these installed libraries is available locally:\\n\\n${links.join(\"\\n\")}\\n\\n` : \"\"}Before making changes or running project commands, run \\`${run} sda:status\\` and follow its instructions.\n\nUse sda/main.ts as the entry point and sda/helpers/ for reusable helpers. Keep one function per helper file, with the file named after the function. Put source data in sda/data/ and results in sda/output/.\n\nAdd focused tests for error-prone transformations, reusable logic with meaningful edge cases, and bug fixes. Mirror source paths under sda/test/: for example, sda/helpers/cleanRows.ts maps to sda/test/helpers/cleanRows.test.ts. Prefer the runtime's built-in test runner. When adding tests, extend the \\`all-tests\\` script to run them after the existing checks.\n\nRun \\`${run} sda\\` to fix and check code, then execute the analysis once.\n\nThe clean script removes cached results and temporary files. Run it only when those cached results can be discarded.\n\nBefore handing off code changes, run \\`${run} all-tests\\` and resolve failures.`,\n  });\n}\n","import { existsSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { isObject } from \"./jsonObject.ts\";\nexport class ProjectManifest {\n  #config: Record<string, unknown>;\n  private constructor(config: Record<string, unknown>) {\n    this.#config = config;\n  }\n  static open(): ProjectManifest {\n    if (!existsSync(\"package.json\"))\n      return new ProjectManifest({ name: \"data-project\", private: true, type: \"module\" });\n    const config: unknown = JSON.parse(readFileSync(\"package.json\", \"utf8\"));\n    if (!isObject(config)) throw new Error(\"package.json must contain a JSON object.\");\n    return new ProjectManifest(config);\n  }\n  reload(): void {\n    this.#config = ProjectManifest.open().#config;\n  }\n  getInstalledPackages(): string[] {\n    return Object.keys(this.getInstalledPackageSpecifiers());\n  }\n  getInstalledPackageSpecifiers(): Record<string, string> {\n    const packages: Record<string, string> = {};\n    for (const key of [\"dependencies\", \"devDependencies\"]) {\n      const dependencies = this.#config[key];\n      if (isObject(dependencies))\n        for (const [name, version] of Object.entries(dependencies)) {\n          if (typeof version === \"string\") packages[name] = version;\n        }\n    }\n    return packages;\n  }\n  updateTasks(tasks: Record<string, string>): void {\n    if (this.#config.type === \"commonjs\") {\n      throw new Error(\n        'Setup requires an ESM project. Set \"type\": \"module\" in package.json, or use --docs to refresh documentation only.',\n      );\n    }\n    if (this.#config.type === undefined) this.#config.type = \"module\";\n    const existing = this.#config.scripts;\n    this.#config.scripts = { ...tasks, ...(isObject(existing) ? existing : {}) };\n    writeFileSync(\"package.json\", JSON.stringify(this.#config, null, 2) + \"\\n\");\n  }\n}\n","import { log } from \"@clack/prompts\";\nimport {\n  existsSync,\n  mkdirSync,\n  mkdtempSync,\n  readFileSync,\n  renameSync,\n  rmSync,\n  writeFileSync,\n} from \"node:fs\";\nimport { join, posix } from \"node:path\";\nimport { x } from \"tar\";\nimport { DOCUMENTED_PACKAGES } from \"./packageRegistry.ts\";\nexport interface PackageDocs {\n  readme?: string;\n  index?: string;\n  llm?: string;\n  plot?: { version: string; pages: string[] };\n}\nexport async function fetchPackageDocs(pkg: string, version: string): Promise<PackageDocs> {\n  const config = DOCUMENTED_PACKAGES.find(\n    (item) => item.value === pkg && item.value.startsWith(\"@nshiab/\"),\n  );\n  if (!config || !/^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/.test(version))\n    throw new Error(`Unsupported package or version: ${pkg}@${version}`);\n  const repo = pkg.slice(\"@nshiab/\".length);\n  mkdirSync(\"docs\", { recursive: true });\n  const staging = mkdtempSync(join(\"docs\", \".download-\"));\n  const contents = join(staging, \"contents\");\n  const target = join(\"docs\", repo);\n  const backup = join(staging, \"previous\");\n  try {\n    const url = `https://github.com/nshiab/${repo}/releases/download/v${version}/documentation.tar.gz`;\n    const response = await fetch(url);\n    if (!response.ok) throw new Error(`HTTP ${response.status} from ${url}`);\n    const archive = join(staging, \"documentation.tar.gz\");\n    writeFileSync(archive, Buffer.from(await response.arrayBuffer()));\n    mkdirSync(contents);\n    let unsafeEntry: string | undefined;\n    await x({\n      file: archive,\n      cwd: contents,\n      strict: true,\n      preservePaths: false,\n      filter(path, entry) {\n        const normalized = posix.normalize(path);\n        if (\n          path.includes(\"\\\\\") ||\n          path.startsWith(\"/\") ||\n          normalized === \"..\" ||\n          normalized.startsWith(\"../\") ||\n          !(\"type\" in entry) ||\n          ![\"File\", \"Directory\"].includes(entry.type)\n        ) {\n          unsafeEntry = path;\n          return false;\n        }\n        return true;\n      },\n    });\n    if (unsafeEntry !== undefined) throw new Error(`Unsafe archive entry: ${unsafeEntry}`);\n    for (const path of [\"README.md\", \"LICENSE\", \"llms.txt\", \"docs\"]) {\n      if (!existsSync(join(contents, path)))\n        throw new Error(`Documentation archive is missing ${path}.`);\n    }\n    const readme = readFileSync(join(contents, \"README.md\"), \"utf8\");\n    const index = readFileSync(join(contents, \"llms.txt\"), \"utf8\");\n    if (existsSync(target)) renameSync(target, backup);\n    try {\n      renameSync(contents, target);\n    } catch (error) {\n      if (existsSync(backup)) renameSync(backup, target);\n      throw error;\n    }\n    return { readme, index };\n  } catch (error) {\n    log.warn(\n      `Could not refresh ${pkg}@${version}: ${String(error)} Existing documentation was preserved and may be stale. Run the docs script again after resolving the error.`,\n    );\n    return {};\n  } finally {\n    rmSync(staging, { recursive: true, force: true });\n  }\n}\n","// Plot's source is VitePress Markdown. Keep examples as reference material,\n// but remove the website UI and turn its custom containers into ordinary text.\nexport function cleanPlotMarkdown(content: string): string {\n  const preserved: string[] = [];\n  const keep = (value: string) => {\n    preserved.push(value);\n    return `\\uE000PLOT${preserved.length - 1}\\uE000`;\n  };\n  const lines = content.split(\"\\n\");\n  const prose: string[] = [];\n  for (let index = 0; index < lines.length; index++) {\n    if (/^\\s*<!--/.test(lines[index])) {\n      const start = index;\n      while (!lines[index].includes(\"-->\") && index + 1 < lines.length) index++;\n      prose.push(lines.slice(start, index + 1).join(\"\\n\"));\n      continue;\n    }\n    const opening = lines[index].match(/^ {0,3}(`{3,}|~{3,})(.*)$/);\n    if (!opening) {\n      prose.push(lines[index]);\n      continue;\n    }\n    const start = index;\n    while (++index < lines.length) {\n      const closing = lines[index].match(/^ {0,3}(`{3,}|~{3,})\\s*$/);\n      if (closing?.[1][0] === opening[1][0] && closing[1].length >= opening[1].length) break;\n    }\n    if (index >= lines.length) throw new Error(\"Unclosed Plot code fence.\");\n    const block = lines.slice(start, index + 1);\n    if (opening[2].trim() === \"js-vue\") {\n      block[0] = `${opening[1]}text`;\n      prose.push(\n        keep(\n          \"Interactive example template (values in `{{…}}` come from the upstream website):\\n\\n\" +\n            block.join(\"\\n\"),\n        ),\n      );\n    } else {\n      prose.push(keep(block.join(\"\\n\")));\n    }\n  }\n  let result = prose\n    .join(\"\\n\")\n    .replace(/<script\\b[^>]*>([\\s\\S]*?)<\\/script>/g, (_match: string, code: string) => {\n      const fence = \"`\".repeat(\n        Math.max(3, ...[...code.matchAll(/`+/g)].map((match) => match[0].length + 1)),\n      );\n      return keep(\n        `**Upstream example setup.** This code may use Vue and sample data from the linked source page.\\n\\n${fence}js\\n${code.trim()}\\n${fence}`,\n      );\n    })\n    .replace(/^[ \\t]*<!--(?!\\s*setup-data-project:)[\\s\\S]*?-->/gm, \"\")\n    .replace(\n      /<\\/?[A-Za-z](?:\"[^\"]*\"|'[^']*'|[^'\"><])*>|(`+)[^`\\n]*?\\1/g,\n      (part: string, fence: string | undefined) => (fence ? keep(part) : part),\n    )\n    .replace(/<style\\b[^>]*>[\\s\\S]*?<\\/style>/g, \"\")\n    .replace(/<p\\b[^>]*>([\\s\\S]*?)<\\/p>/g, (_match: string, body: string) =>\n      /<(?:input|select|label)\\b/.test(body) ? \"\" : body,\n    )\n    .replace(/<PlotRender\\b[\\s\\S]*?\\/>/g, (component) => {\n      const options = component.match(/:options=([\"'])([\\s\\S]*?)\\1/)?.[2];\n      const method = component.match(/\\bmethod=[\"'](\\w+)[\"']/)?.[1] ?? \"plot\";\n      if (!options) throw new Error(\"Unrecognized PlotRender example.\");\n      return keep(`\\`\\`\\`js\\nPlot.${method}(${options});\\n\\`\\`\\``);\n    })\n    .replace(/<VersionBadge\\b[\\s\\S]*?\\/>/g, (badge) => {\n      const version = badge.match(/\\bversion=[\"']([^\"']+)[\"']/)?.[1];\n      return version ? `(since v${version})` : \"\";\n    })\n    .replace(/<\\/?span\\b(?:\"[^\"]*\"|'[^']*'|[^'\">])*>/g, \"\")\n    .replace(/<svg\\b[\\s\\S]*?<\\/svg>/g, \"arrow\");\n  result = result\n    .replace(/^[ \\t]*:::plot\\b([^\\n]*)/gm, (_match: string, options: string) => {\n      const url = options.match(/https?:\\/\\/\\S+/)?.[0];\n      return url ? `[Interactive example](${url})\\n` : \"\";\n    })\n    .replace(\n      /^([ \\t]*):::(tip|info|warning)\\b[ \\t]*/gm,\n      (_match: string, indent: string, kind: string) =>\n        `${indent}**${kind[0].toUpperCase() + kind.slice(1)}:** `,\n    )\n    .replace(/^[ \\t]*:::[ \\t]*$/gm, \"\")\n    .replace(/[ \\t]+:::[ \\t]*$/gm, \"\")\n    .replace(\n      /\\{\\{([\\s\\S]*?)\\}\\}/g,\n      (_match: string, expression: string) => `\\`${expression.trim().replace(/\\s+/g, \" \")}\\``,\n    )\n    .replace(/[ \\t]+$/gm, \"\")\n    .replace(/\\n{3,}/g, \"\\n\\n\")\n    .trim();\n  return (\n    result.replace(\n      /\\uE000PLOT(\\d+)\\uE000/g,\n      (_match: string, index: string) => preserved[Number(index)],\n    ) + \"\\n\"\n  );\n}\n","import { cleanPlotMarkdown } from \"./cleanPlotMarkdown.ts\";\nimport { posix } from \"node:path\";\n\n// The Plot source uses ATX headings, explicit VitePress IDs, and Markdown fences.\n// Keep code verbatim; rewrite only prose links and anchors while joining pages.\nexport function combinePlotDocs(version: string, documents: Map<string, string>): string {\n  const pages = [...documents.keys()].sort();\n  const source = `https://github.com/observablehq/plot/tree/v${version}/docs`;\n  const anchors = new Map<string, Map<string, string>>();\n  const sections = new Map<string, { line: number; title: string; id: string }[]>();\n  const pageId = (page: string) => `plot-${page.replace(/\\.md$/, \"\").replaceAll(\"/\", \"--\")}`;\n\n  for (const page of pages) {\n    const ids = new Map<string, string>();\n    const headings: { line: number; title: string; id: string }[] = [];\n    const counts = new Map<string, number>();\n    proseLines(documents.get(page) ?? \"\", (line, number) => {\n      for (const match of line.matchAll(/\\bid=[\"']([^\"']+)[\"']/g)) {\n        ids.set(match[1], `${pageId(page)}--${match[1]}`);\n      }\n      const heading = line.match(/^ {0,3}#{1,6}\\s+(.+?)\\s*#*\\s*$/);\n      if (!heading) return line;\n      const explicit = heading[1].match(/\\{#([^}]+)\\}/)?.[1];\n      const title = heading[1].replace(/\\s*\\{#[^}]+\\}/g, \"\");\n      const slug =\n        explicit ??\n        title\n          .replace(/<[^>]*>/g, \"\")\n          .toLowerCase()\n          .replace(/[^\\p{L}\\p{N}_\\s-]/gu, \"\")\n          .trim()\n          .replace(/\\s+/g, \"-\");\n      const count = counts.get(slug) ?? 0;\n      counts.set(slug, count + 1);\n      const localId = `${slug}${count ? `-${count}` : \"\"}`;\n      const id = `${pageId(page)}--${localId}`;\n      ids.set(localId, id);\n      headings.push({ line: number, title, id });\n      return line;\n    });\n    anchors.set(page, ids);\n    sections.set(page, headings);\n  }\n\n  function link(target: string, page: string): string {\n    if (/^(?:[a-z][a-z\\d+.-]*:|\\/\\/)/i.test(target)) return target;\n    const [pathAndQuery, fragment] = target.split(\"#\", 2);\n    const path = pathAndQuery.split(\"?\", 1)[0];\n    const resolved =\n      path === \"\"\n        ? page\n        : posix.normalize(\n            path.startsWith(\"/\") ? path.slice(1) : posix.join(posix.dirname(page), path),\n          );\n    const markdown = [resolved, `${resolved}.md`, `${resolved}/index.md`].find((candidate) =>\n      documents.has(candidate),\n    );\n    if (markdown) {\n      const id = fragment\n        ? anchors.get(markdown)?.get(decodeURIComponent(fragment))\n        : pageId(markdown);\n      if (id) return `#${id}`;\n      // Preserve an upstream target when a fragment is not a known heading/ID.\n      return `${source}/${markdown}${fragment ? `#${fragment}` : \"\"}`;\n    }\n    if (resolved.endsWith(\".md\")) {\n      return `${source}/${resolved}${fragment ? `#${fragment}` : \"\"}`;\n    }\n    const base =\n      \"https://raw.githubusercontent.com/observablehq/plot/\" + `refs/tags/v${version}/docs/`;\n    return path.startsWith(\"/\")\n      ? new URL(`public${target}`, base).href\n      : new URL(target, `${base}${page}`).href;\n  }\n\n  const contents = pages\n    .flatMap((page) => [\n      `- [${page}](#${pageId(page)})`,\n      ...(sections.get(page) ?? []).map(\n        ({ title, id }) => `  - [${title.replace(/[[\\]]/g, \"\")}](#${id})`,\n      ),\n    ])\n    .join(\"\\n\");\n  const combined = pages\n    .map((page) => {\n      const headings = new Map(\n        (sections.get(page) ?? []).map((heading) => [heading.line, heading]),\n      );\n      const body = proseLines(documents.get(page) ?? \"\", (line, number) => {\n        const heading = headings.get(number);\n        // Inline code also remains verbatim. Plot's prose links have simple destinations.\n        line = line\n          .split(/(`+[^`]*`+)/g)\n          .map((part, index) => {\n            if (index % 2) return part;\n            return part\n              .replace(\n                /(\\]\\()([^\\s)]+)([^)]*\\))/g,\n                (_match: string, before: string, target: string, after: string) =>\n                  `${before}${link(target, page)}${after}`,\n              )\n              .replace(\n                /^( {0,3}\\[[^\\]]+\\]:\\s*)(\\S+)/,\n                (_match: string, before: string, target: string) =>\n                  `${before}${link(target, page)}`,\n              )\n              .replace(\n                /(?<!:)\\b(href|src)=([\"'])([^\"']+)\\2/g,\n                (_match: string, attr: string, quote: string, target: string) =>\n                  `${attr}=${quote}${link(target, page)}${quote}`,\n              )\n              .replace(\n                /\\bid=([\"'])([^\"']+)\\1/g,\n                (_match: string, quote: string, id: string) =>\n                  `id=${quote}${anchors.get(page)?.get(id) ?? id}${quote}`,\n              );\n          })\n          .join(\"\");\n        return heading\n          ? `<a id=\"${heading.id}\"></a>\\n\\n${line.replace(/\\s*\\{#[^}]+\\}/g, \"\")}`\n          : line;\n      });\n      return `<a id=\"${pageId(page)}\"></a>\\n\\n# ${page}\\n\\nSource: ${source}/${page}\\n\\n${body}`;\n    })\n    .join(\"\\n\\n---\\n\\n\");\n  return cleanPlotMarkdown(\n    `# Observable Plot ${version}\\n\\nPackage: \\`@observablehq/plot@${version}\\`. Source: [v${version}](${source}).\\n\\nThis reference combines selected upstream documentation for static charts and maps. Introductory and site pages, interaction helpers, and the Auto and Tip marks are omitted. Website controls are omitted; upstream setup and interactive templates are labeled as reference code. Use the table of contents to find API signatures and examples; links to omitted pages lead to the tagged upstream documentation.\\n\\n## Table of contents\\n\\n${contents}\\n\\n---\\n\\n${combined}\\n\\n<!-- setup-data-project:observable-plot:${version}:complete -->\\n`,\n  );\n}\n\nexport function proseLines(\n  content: string,\n  transform: (line: string, number: number) => string,\n): string {\n  let fence: { character: string; length: number } | undefined;\n  let script = false;\n  return content\n    .split(\"\\n\")\n    .map((line, number) => {\n      const marker = line.match(/^ {0,3}(`{3,}|~{3,})/);\n      if (fence) {\n        if (\n          marker?.[1][0] === fence.character &&\n          marker[1].length >= fence.length &&\n          /^ {0,3}(?:`+|~+)\\s*$/.test(line)\n        )\n          fence = undefined;\n        return line;\n      }\n      if (marker) {\n        fence = { character: marker[1][0], length: marker[1].length };\n        return line;\n      }\n      if (/^\\s*<script\\b/.test(line)) script = true;\n      if (script) {\n        if (/<\\/script>/.test(line)) script = false;\n        return line;\n      }\n      return transform(line, number);\n    })\n    .join(\"\\n\");\n}\n","// Static chart creation references. Keep this explicit so new upstream pages do\n// not silently expand the installed agent reference.\nexport const PLOT_DOC_PAGES: string[] = [\n  \"features/plots.md\",\n  \"features/marks.md\",\n  \"features/scales.md\",\n  \"features/projections.md\",\n  \"features/legends.md\",\n  \"features/facets.md\",\n  \"features/formats.md\",\n  \"features/curves.md\",\n  \"transforms/bin.md\",\n  \"transforms/group.md\",\n  \"transforms/stack.md\",\n  \"transforms/normalize.md\",\n  \"transforms/centroid.md\",\n  \"transforms/sort.md\",\n  \"marks/area.md\",\n  \"marks/arrow.md\",\n  \"marks/axis.md\",\n  \"marks/bar.md\",\n  \"marks/bollinger.md\",\n  \"marks/box.md\",\n  \"marks/cell.md\",\n  \"marks/contour.md\",\n  \"marks/delaunay.md\",\n  \"marks/density.md\",\n  \"marks/difference.md\",\n  \"marks/dot.md\",\n  \"marks/frame.md\",\n  \"marks/geo.md\",\n  \"marks/grid.md\",\n  \"marks/hexgrid.md\",\n  \"marks/image.md\",\n  \"marks/line.md\",\n  \"marks/linear-regression.md\",\n  \"marks/link.md\",\n  \"marks/raster.md\",\n  \"marks/rect.md\",\n  \"marks/rule.md\",\n  \"marks/text.md\",\n  \"marks/tick.md\",\n  \"marks/tree.md\",\n  \"marks/vector.md\",\n  \"marks/waffle.md\",\n].sort();\n","import { cleanPlotMarkdown } from \"./cleanPlotMarkdown.ts\";\nimport { posix } from \"node:path\";\nimport { proseLines } from \"./combinePlotDocs.ts\";\nimport { PLOT_DOC_PAGES } from \"./plotDocPages.ts\";\n\n// Split the cached format without changing code examples or heading anchors.\nexport function splitPlotDocs(reference: string, version: string): Map<string, string> {\n  const sections = [\n    ...reference.matchAll(\n      /<a id=\"(plot-[^\"]+)\"><\\/a>\\n\\n# ([^\\n]+\\.md)\\n\\nSource:\\s+([^\\s]+)\\n\\n/g,\n    ),\n  ];\n  const files = new Map<string, string>();\n  const anchors = new Map<string, string>();\n  const source = `https://github.com/observablehq/plot/tree/v${version}/docs`;\n  const completion = `<!-- setup-data-project:observable-plot:${version}:complete -->`;\n  if (!reference.trimEnd().endsWith(completion)) throw new Error(\"Incomplete Plot reference.\");\n  const end = reference.lastIndexOf(completion);\n  const licenseStart = reference.lastIndexOf(\"\\n## Upstream license\\n\", end);\n  for (let index = 0; index < sections.length; index++) {\n    const section = sections[index];\n    const page = section[2];\n    if (!PLOT_DOC_PAGES.includes(page) || files.has(page) || section[3] !== `${source}/${page}`)\n      throw new Error(`Invalid Plot page: ${page}`);\n    const body = reference\n      .slice(section.index, sections[index + 1]?.index ?? (licenseStart >= 0 ? licenseStart : end))\n      .trimEnd()\n      .replace(/\\n\\n---$/, \"\");\n    files.set(page, body);\n    proseLines(body, (line) => {\n      for (const match of line.matchAll(/\\bid=[\"']([^\"']+)[\"']/g)) anchors.set(match[1], page);\n      return line;\n    });\n  }\n  if (files.size !== PLOT_DOC_PAGES.length) throw new Error(\"Incomplete Plot pages.\");\n\n  for (const [page, body] of files) {\n    const link = (id: string) => {\n      const destination = anchors.get(id);\n      return destination && destination !== page\n        ? `${posix.relative(posix.dirname(page), destination)}#${id}`\n        : `#${id}`;\n    };\n    files.set(\n      page,\n      cleanPlotMarkdown(\n        proseLines(body, (line) =>\n          line\n            .split(/(`+[^`]*`+)/g)\n            .map((part, index) =>\n              index % 2\n                ? part\n                : part\n                    .replace(\n                      /(\\]\\()#([^\\s)]+)([^)]*\\))/g,\n                      (_match: string, before: string, id: string, after: string) =>\n                        `${before}${link(id)}${after}`,\n                    )\n                    .replace(\n                      /^( {0,3}\\[[^\\]]+\\]:\\s*)#(\\S+)/,\n                      (_match: string, before: string, id: string) => `${before}${link(id)}`,\n                    )\n                    .replace(\n                      /(?<!:)\\b(href|src)=([\"'])#([^\"']+)\\2/g,\n                      (_match: string, attr: string, quote: string, id: string) =>\n                        `${attr}=${quote}${link(id)}${quote}`,\n                    ),\n            )\n            .join(\"\"),\n        ),\n      ),\n    );\n  }\n  const license =\n    licenseStart >= 0\n      ? reference.slice(licenseStart + \"\\n## Upstream license\\n\".length, end).trim()\n      : undefined;\n  if (license) files.set(\"LICENSE\", license + \"\\n\");\n  const index =\n    `# Observable Plot ${version}\\n\\n> Selected documentation for static charts and maps. Start here, then read the relevant pages.\\n\\n[Versioned upstream documentation](${source})${license ? \" · [License](./LICENSE)\" : \"\"}\\n\\n` +\n    [\"features\", \"marks\", \"transforms\"]\n      .map(\n        (group) =>\n          `## ${group[0].toUpperCase() + group.slice(1)}\\n\\n` +\n          PLOT_DOC_PAGES.filter((page) => page.startsWith(`${group}/`))\n            .map((page) => `- [${page}](./${page})`)\n            .join(\"\\n\"),\n      )\n      .join(\"\\n\\n\") +\n    \"\\n\";\n  files.set(\"llms.txt\", index);\n  return files;\n}\n","import { log } from \"@clack/prompts\";\nimport { existsSync, mkdirSync, mkdtempSync, renameSync, rmSync, writeFileSync } from \"node:fs\";\nimport { dirname, join } from \"node:path\";\nimport { splitPlotDocs } from \"./splitPlotDocs.ts\";\nimport { combinePlotDocs } from \"./combinePlotDocs.ts\";\nimport { PLOT_DOC_PAGES } from \"./plotDocPages.ts\";\nimport type { PackageDocs } from \"./fetchPackageDocs.ts\";\n\n// Replace local documentation only after every page is ready.\nexport async function fetchPlotDocs(\n  version: string,\n  options: { preferStored?: boolean } = {},\n): Promise<PackageDocs> {\n  const tag = `v${version}`;\n  const directory = join(\"docs\", \"observable-plot\");\n  try {\n    let llm: string | undefined;\n    if (options.preferStored !== false) {\n      try {\n        const response = await fetch(\n          \"https://raw.githubusercontent.com/nshiab/setup-data-project/\" +\n            `refs/heads/main/docs-cache/observable-plot/${version}/llm.md`,\n        );\n        if (response.ok) {\n          const cached = await response.text();\n          if (isStoredReference(cached, version)) llm = cached;\n        }\n      } catch {\n        // A cache is an optimization. An unavailable cache never blocks the tag.\n      }\n    }\n    if (llm === undefined) llm = await generatePlotReference(version);\n    const files = splitPlotDocs(llm, version);\n    mkdirSync(\"docs\", { recursive: true });\n    const staging = mkdtempSync(join(\"docs\", \".plot-\"));\n    const contents = join(staging, \"contents\");\n    const backup = join(staging, \"previous\");\n    try {\n      for (const [page, content] of files) {\n        const path = join(contents, page);\n        mkdirSync(dirname(path), { recursive: true });\n        writeFileSync(path, content);\n      }\n      if (existsSync(directory)) renameSync(directory, backup);\n      try {\n        renameSync(contents, directory);\n      } catch (error) {\n        if (existsSync(backup)) renameSync(backup, directory);\n        throw error;\n      }\n    } finally {\n      rmSync(staging, { recursive: true, force: true });\n    }\n    return { llm, index: files.get(\"llms.txt\"), plot: { version, pages: [...PLOT_DOC_PAGES] } };\n  } catch (error) {\n    log.warn(\n      `Could not fetch complete Observable Plot documentation for ${tag}. ` +\n        \"Existing files were preserved, but may not match the installed \" +\n        \"version. Resolve the refresh failure before using this reference. \" +\n        String(error),\n    );\n    return {};\n  }\n}\n\nexport async function generatePlotReference(version: string): Promise<string> {\n  if (!/^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?$/.test(version))\n    throw new Error(\"An exact Plot version is required.\");\n  const tag = `v${version}`;\n  const pages = PLOT_DOC_PAGES;\n  const documents = new Map<string, string>();\n  const failed: string[] = [];\n  // Fetch in small batches to avoid overwhelming GitHub on the first run.\n  for (let offset = 0; offset < pages.length; offset += 8) {\n    await Promise.all(\n      pages.slice(offset, offset + 8).map(async (page) => {\n        try {\n          const url =\n            \"https://raw.githubusercontent.com/observablehq/plot/\" +\n            `refs/tags/${tag}/docs/${page}`;\n          const response = await fetch(url);\n          if (!response.ok) throw new Error(`HTTP ${response.status}`);\n          const content = await response.text();\n          documents.set(page, content);\n        } catch {\n          failed.push(page);\n        }\n      }),\n    );\n  }\n\n  if (failed.length > 0) {\n    throw new Error(`Could not fetch ${failed.length} Markdown pages`);\n  }\n  const response = await fetch(\n    `https://raw.githubusercontent.com/observablehq/plot/refs/tags/${tag}/LICENSE`,\n  );\n  if (!response.ok) throw new Error(`Could not fetch Plot's license: HTTP ${response.status}`);\n  const license = await response.text();\n  const completion = `<!-- setup-data-project:observable-plot:${version}:complete -->`;\n  return combinePlotDocs(version, documents).replace(\n    completion,\n    `## Upstream license\\n\\n${license.trim()}\\n\\n${completion}`,\n  );\n}\n\nfunction isStoredReference(content: string, version: string): boolean {\n  const source = `https://github.com/observablehq/plot/tree/v${version}/docs`;\n  const metadata = content.split(/\\n\\s*\\n/)[1]?.replace(/\\s+/g, \" \");\n  if (\n    !content.startsWith(`# Observable Plot ${version}\\n\\n`) ||\n    metadata !== `Package: \\`@observablehq/plot@${version}\\`. Source: [v${version}](${source}).` ||\n    !content.trimEnd().endsWith(`<!-- setup-data-project:observable-plot:${version}:complete -->`)\n  )\n    return false;\n\n  // Match actual page sections, not TOC entries. Require every selected page\n  // exactly once and some upstream heading/content after its source record.\n  const sections = [\n    ...content.matchAll(/<a id=\"(plot-[^\"]+)\"><\\/a>\\n\\n# ([^\\n]+\\.md)\\n\\nSource:\\s+([^\\s]+)\\n\\n/g),\n  ];\n  if (sections.length !== PLOT_DOC_PAGES.length) return false;\n  const found = new Set<string>();\n  for (let index = 0; index < sections.length; index++) {\n    const section = sections[index];\n    const page = section[2];\n    const id = `plot-${page.replace(/\\.md$/, \"\").replaceAll(\"/\", \"--\")}`;\n    if (\n      !PLOT_DOC_PAGES.includes(page) ||\n      found.has(page) ||\n      section[1] !== id ||\n      section[3] !== `${source}/${page}`\n    )\n      return false;\n    const body = content.slice(section.index + section[0].length, sections[index + 1]?.index);\n    if (!/^#{1,6}\\s+\\S/m.test(body)) return false;\n    found.add(page);\n  }\n  return true;\n}\n","import { log } from \"@clack/prompts\";\nimport { fetchPackageDocs, type PackageDocs } from \"./fetchPackageDocs.ts\";\nimport { fetchPlotDocs } from \"./fetchPlotDocs.ts\";\nimport { getInstalledPackageConfigs } from \"./packageRegistry.ts\";\nexport async function syncPackageDocs(\n  installedPackages: string[],\n  installedVersions: Record<string, string>,\n): Promise<Record<string, PackageDocs>> {\n  const mapping: Record<string, PackageDocs> = {};\n  for (const pkg of getInstalledPackageConfigs(installedPackages)) {\n    const version = installedVersions[pkg.value];\n    if (!version) {\n      log.warn(\n        `Could not determine the installed version of ${pkg.value}. Install the project dependencies, then run the docs script again. Existing documentation may be stale.`,\n      );\n      continue;\n    }\n    const docs =\n      pkg.value === \"@observablehq/plot\"\n        ? await fetchPlotDocs(version)\n        : await fetchPackageDocs(pkg.value, version);\n    if (docs.index !== undefined || docs.plot) mapping[pkg.value] = docs;\n  }\n  return mapping;\n}\n","import { existsSync, readFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { isObject } from \"./jsonObject.ts\";\nexport function getInstalledPackageVersions(\n  packageSpecifiers: Record<string, string>,\n): Record<string, string> {\n  const versions: Record<string, string> = {};\n  for (const pkg of Object.keys(packageSpecifiers)) {\n    const path = join(\"node_modules\", pkg, \"package.json\");\n    if (!existsSync(path)) continue;\n    const config: unknown = JSON.parse(readFileSync(path, \"utf8\"));\n    if (\n      isObject(config) &&\n      typeof config.version === \"string\" &&\n      /^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/.test(config.version)\n    )\n      versions[pkg] = config.version;\n  }\n  return versions;\n}\n","import { SUPPORTED_PACKAGES } from \"./packageRegistry.ts\";\n\nexport interface CliOptions {\n  help: boolean;\n  docs: boolean;\n  packages: string[];\n}\n\nconst packageFlags = new Map(\n  SUPPORTED_PACKAGES.map((pkg) => [\n    `--${pkg.label.replace(/^simple-data-analysis/, \"sda\").replace(/^journalism-/, \"\")}`,\n    pkg.value,\n  ]),\n);\n\nexport const CLI_HELP = `Usage: setup-data-project [library flags | --docs] [--help]\n\n${Array.from(packageFlags, ([flag, pkg]) => `  ${flag.padEnd(16)} Select ${pkg}.`).join(\"\\n\")}\n  --docs            Refresh documentation only for installed libraries.\n  -h, --help        Show this help and exit.\n\nWithout a package flag, choose packages interactively.\nCombine package flags to select libraries without prompting.\nPackage flags keep existing versions and still set up project files and docs.`;\n\nexport function parseArguments(args: string[]): CliOptions {\n  const options: CliOptions = { help: false, docs: false, packages: [] };\n\n  for (const arg of args) {\n    const pkg = packageFlags.get(arg);\n    if (arg === \"--help\" || arg === \"-h\") {\n      options.help = true;\n    } else if (arg === \"--docs\") {\n      options.docs = true;\n    } else if (pkg) {\n      if (!options.packages.includes(pkg)) options.packages.push(pkg);\n    } else {\n      throw new Error(`Unknown argument: ${arg}. Use --help for usage.`);\n    }\n  }\n\n  if (options.docs && options.packages.length > 0)\n    throw new Error(\"--docs cannot be combined with package flags.\");\n  return options;\n}\n","#!/usr/bin/env node\nimport { cancel, intro, isCancel, multiselect, outro, select, spinner } from \"@clack/prompts\";\nimport process from \"node:process\";\nimport { execFileSync } from \"node:child_process\";\n\nimport { getRuntime } from \"./helpers/getRuntime.ts\";\nimport { PACKAGE_OPTIONS } from \"./helpers/packageOptions.ts\";\nimport { ensureGitignore } from \"./helpers/ensureGitignore.ts\";\nimport { ensureReadme } from \"./helpers/ensureReadme.ts\";\nimport { ensureTooling } from \"./helpers/ensureTooling.ts\";\nimport { ensureVscode } from \"./helpers/ensureVscode.ts\";\nimport { runPackageManager, installPackages } from \"./helpers/installPackages.ts\";\nimport { getProjectTasks } from \"./helpers/getProjectTasks.ts\";\nimport { createFolderStructure } from \"./helpers/createFolderStructure.ts\";\nimport { ensureEnvFile } from \"./helpers/ensureEnvFile.ts\";\nimport { ensureAgents } from \"./helpers/ensureAgents.ts\";\nimport { getInstalledPackageConfigs } from \"./helpers/packageRegistry.ts\";\nimport { ProjectManifest } from \"./helpers/projectManifest.ts\";\nimport { syncPackageDocs } from \"./helpers/syncPackageDocs.ts\";\nimport { getInstalledPackageVersions } from \"./helpers/getInstalledPackageVersions.ts\";\nimport { CLI_HELP, parseArguments } from \"./helpers/parseArguments.ts\";\n\nasync function main() {\n  const cliOptions = parseArguments(process.argv.slice(2));\n  if (cliOptions.help) {\n    console.log(CLI_HELP);\n    return;\n  }\n\n  const runtime = getRuntime();\n  const projectManifest = ProjectManifest.open();\n  if (cliOptions.docs) {\n    await refreshDocs(projectManifest);\n    return;\n  }\n  console.log();\n  intro(`Hi! 👋 (Running on ${runtime})`);\n\n  const installedPackages = projectManifest.getInstalledPackages();\n  const options = PACKAGE_OPTIONS.map((opt) => ({\n    ...opt,\n    label: installedPackages.includes(opt.value)\n      ? `${opt.label} \\x1b[2m(installed)\\x1b[22m`\n      : opt.label,\n  }));\n\n  const selectedPackages =\n    cliOptions.packages.length > 0\n      ? cliOptions.packages\n      : await multiselect({\n          message:\n            \"Which libraries would you like to install?\\n\\x1b[2m(space to select, arrows to navigate, enter to confirm)\\x1b[22m\\n\",\n          options,\n          required: false,\n        });\n\n  if (isCancel(selectedPackages)) {\n    cancel(\"Installation cancelled.\");\n    process.exit(0);\n  }\n\n  const alreadyInstalled = selectedPackages.filter((pkg) => installedPackages.includes(pkg));\n\n  const packagesToInstall: string[] = [];\n\n  for (const pkg of selectedPackages) {\n    if (alreadyInstalled.includes(pkg)) {\n      if (cliOptions.packages.length > 0) continue;\n\n      const action = await select({\n        message: `${pkg} is already installed. What would you like to do?`,\n        options: [\n          { value: \"skip\", label: \"Keep existing version\" },\n          { value: \"update\", label: \"Update to latest\" },\n        ],\n      });\n\n      if (isCancel(action)) {\n        cancel(\"Installation cancelled.\");\n        process.exit(0);\n      }\n\n      if (action === \"update\") {\n        packagesToInstall.push(pkg);\n      }\n    } else {\n      packagesToInstall.push(pkg);\n    }\n  }\n\n  projectManifest.updateTasks(getProjectTasks(runtime));\n\n  const sInstall = spinner();\n  sInstall.start(\"Installing packages...\");\n\n  try {\n    await installPackages(packagesToInstall);\n    projectManifest.reload();\n    const declared = projectManifest.getInstalledPackageSpecifiers();\n    if (\n      projectManifest\n        .getInstalledPackages()\n        .some((pkg) =>\n          [\"@nshiab/simple-data-analysis\", \"@nshiab/journalism-dataviz\"].includes(pkg),\n        ) &&\n      !declared[\"@observablehq/plot\"]\n    ) {\n      await installPackages([\"@observablehq/plot\"]);\n      projectManifest.reload();\n    }\n    await ensureTooling(projectManifest);\n    // Reinstall declared dependencies when a project was cloned without node_modules.\n    projectManifest.reload();\n    const versions = getInstalledPackageVersions(projectManifest.getInstalledPackageSpecifiers());\n    if (projectManifest.getInstalledPackages().some((pkg) => !versions[pkg]))\n      await runPackageManager([\"install\"]);\n  } catch (error) {\n    sInstall.stop(\"Package installation failed.\");\n    throw error;\n  }\n  sInstall.stop(\"Packages installed.\");\n\n  projectManifest.reload();\n  const finalInstalledPackages = getInstalledPackageConfigs(\n    projectManifest.getInstalledPackages(),\n  ).map((pkg) => pkg.value);\n  const docsMapping = await refreshDocs(projectManifest);\n\n  const sConfig = spinner();\n  sConfig.start(\"Preparing project files and configuration...\");\n  try {\n    projectManifest.updateTasks(getProjectTasks());\n    execFileSync(process.execPath, [\"node_modules/oxfmt/bin/oxfmt\", \"--write\", \"package.json\"], {\n      stdio: \"pipe\",\n    });\n\n    createFolderStructure(finalInstalledPackages);\n    ensureGitignore();\n    ensureEnvFile();\n    ensureVscode();\n    ensureReadme(runtime, finalInstalledPackages);\n    ensureAgents(docsMapping, runtime, finalInstalledPackages);\n  } catch (error) {\n    sConfig.stop(\"Project configuration failed.\");\n    throw error;\n  }\n  sConfig.stop(\"Project files and configuration ready.\");\n\n  outro(\n    process.exitCode\n      ? \"Project setup complete; documentation needs attention.\"\n      : \"You are all set! 🙌\",\n  );\n}\n\nasync function refreshDocs(manifest: ProjectManifest) {\n  const packages = getInstalledPackageConfigs(manifest.getInstalledPackages()).map(\n    (pkg) => pkg.value,\n  );\n  const sDocs = spinner();\n  sDocs.start(\"Downloading documentation...\");\n  try {\n    const mapping = await syncPackageDocs(\n      packages,\n      getInstalledPackageVersions(manifest.getInstalledPackageSpecifiers()),\n    );\n    if (Object.keys(mapping).length !== packages.length) {\n      sDocs.stop(\"Documentation incomplete. 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@nshiab/setup-data-project",
-  "version": "4.0.2",
+  "version": "4.0.3",
   "description": "Quickly kick off a project using simple-data-analysis-core, simple-data-analysis, and journalism libraries.",
   "license": "MIT",
   "repository": "https://github.com/nshiab/setup-data-project",
@@ -32,7 +32,11 @@
     "tar": "^7.5.11"
   },
   "devDependencies": {
+    "@types/bun": "1.4.4",
     "@types/node": "24.19.2",
+    "oxfmt": "0.74.0",
+    "oxlint": "1.89.0",
+    "oxlint-tsgolint": "7.0.2005",
     "vite-plus": "1.2.0"
   },
   "engines": {