@nshiab/setup-data-project 3.0.5 → 4.0.0

package/README.md

@@ -57,6 +57,10 @@ and unmanaged documentation are preserved.
 Generated projects run TypeScript directly with Node or Bun. Vite+ provides
 formatting, linting, type checking, and Vitest tests. Use `npm run sda`,
 `npm run all-tests`, and `npm run fix` (or `bun run` for Bun projects).
+The `sda` command runs `fix`, then runs `sda/main.ts` once if checks pass.
+Use `sda:watch` to repeat on changes to `sda/` and `.env`, excluding `sda/output/`.
+The watcher comes from the installed setup-data-project package; no runner script is added to your project.
+SDA blocks simultaneous runs. Recovery after a forced termination is best effort.
 The generated `all-tests` command also succeeds when no tests exist.
 New development tools are installed at their latest versions; existing dependencies
 are preserved.

package/dist/jsonObject-B1ldqsgL.mjs

@@ -0,0 +1,8 @@
+//#region src/helpers/jsonObject.ts
+function isObject(value) {
+	return value !== null && typeof value === "object" && !Array.isArray(value);
+}
+//#endregion
+export { isObject as t };
+
+//# sourceMappingURL=jsonObject-B1ldqsgL.mjs.map

package/dist/jsonObject-B1ldqsgL.mjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"jsonObject-B1ldqsgL.mjs","names":[],"sources":["../src/helpers/jsonObject.ts"],"sourcesContent":["export function isObject(value: unknown): value is Record<string, unknown> {\n  return value !== null && typeof value === \"object\" && !Array.isArray(value);\n}\n"],"mappings":";AAAA,SAAgB,SAAS,OAAkD;CACzE,OAAO,UAAU,QAAQ,OAAO,UAAU,YAAY,CAAC,MAAM,QAAQ,KAAK;AAC5E"}

package/dist/main.mjs

@@ -1,4 +1,5 @@
 #!/usr/bin/env node
+import { t as isObject } from "./jsonObject-B1ldqsgL.mjs";
 import { cancel, intro, isCancel, log, multiselect, outro, select, spinner } from "@clack/prompts";
 import process$1 from "node:process";
 import { execFile, execFileSync } from "node:child_process";
@@ -122,6 +123,8 @@ const GITIGNORE_ENTRIES = [
 	"docs/",
 	".tmp",
 	".sda-cache",
+	"sda/.sda.pid",
+	"sda/.sda-lock/",
 	".journalism-cache",
 	"sda/data",
 	"sda/output",
@@ -184,12 +187,15 @@ function ensureReadme(runtime, installedPackages = []) {
 		createContent: (section) => `# Data project\n\nCreated with [setup-data-project](https://github.com/nshiab/setup-data-project).\n\n${section}`,
 		content: `${libraries ? `Installed libraries: ${libraries}.\n\n` : ""}Use sda/main.ts to process source data from sda/data/ and write results to sda/output/. Both data folders are ignored by Git. Put reusable helpers in sda/helpers/ and tests in sda/tests/. Import test utilities from \`vite-plus/test\`.
 
-- \`${run} sda\`: run the analysis and watch for changes.
+- \`${run} sda\`: run \`${run} fix\`, then run the analysis once if checks pass.
+- \`${run} sda:watch\`: do the same on changes to sda/ and .env, excluding sda/output/.
 - \`${run} all-tests\`: check types, lint, formatting, and tests; succeeds when no tests exist.
 - \`${run} fix\`: apply formatting and automatic fixes.
 - \`${run} docs\`: refresh documentation for the installed library versions.
 - \`${run} clean\`: delete cached results and temporary files in .sda-cache/, .journalism-cache/, and .tmp/.
 
+SDA blocks simultaneous runs. Recovery after a forced termination is best effort.
+
 For test-driven development, run one test file and watch for changes with \`${vp} test sda/tests/example.test.ts --watch\`. Replace the path with your test file.
 
 In VS Code, install the recommended Vite+ extension pack for Oxc formatting and linting and the Vitest test runner. Generated .vscode/settings.json enables formatting and lint fixes on save, plus visual line wrapping. Existing VS Code configuration files are preserved.
@@ -221,17 +227,17 @@ async function installPackages(packages, options = {}) {
 	]);
 }
 //#endregion
+//#region package.json
+var name = "@nshiab/setup-data-project";
+var version = "4.0.0";
+//#endregion
 //#region src/helpers/ensureTooling.ts
-const tools = [
-	"vite-plus",
-	"typescript",
-	"@types/node"
-];
+const tools = ["vite-plus", "@types/node"];
 async function ensureTooling(manifest) {
 	const runtime = getRuntime();
 	const runtimeTools = runtime === "bun" ? [...tools, "@types/bun"] : tools;
 	const installed = manifest.getInstalledPackages();
-	await installPackages(runtimeTools.filter((pkg) => !installed.includes(pkg)).map((pkg) => `${pkg}@latest`), { development: true });
+	await installPackages([...runtimeTools.filter((pkg) => !installed.includes(pkg)).map((pkg) => `${pkg}@latest`), ...installed.includes(name) ? [] : [`${name}@${version}`]], { development: true });
 	if (![
 		"vite.config.ts",
 		"vite.config.js",
@@ -292,14 +298,13 @@ function ensureVscode() {
 	}
 }
 //#endregion
-//#region package.json
-var version = "3.0.5";
-//#endregion
 //#region src/helpers/getProjectTasks.ts
 function getProjectTasks(runtime = getRuntime()) {
 	const vp = runtime === "bun" ? "bun run --bun vp" : "vp";
+	const runner = runtime === "bun" ? "bun run --bun --no-env-file sda-run" : "sda-run";
 	return {
-		sda: runtime === "bun" ? "bun run --watch sda/main.ts" : "node --env-file-if-exists=.env --watch sda/main.ts",
+		sda: `${runner} sda/main.ts`,
+		"sda:watch": `${runner} --watch sda/main.ts sda .env --ignore sda/output`,
 		"all-tests": `${vp} check && ${vp} test --passWithNoTests`,
 		clean: "rm -rf .sda-cache .journalism-cache .tmp",
 		fix: `${vp} check --fix`,
@@ -352,7 +357,9 @@ function ensureAgents(docsMapping, runtime, installedPackages = Object.keys(docs
 
 Use sda/main.ts as the entry point and sda/helpers/ for reusable helpers. Put tests in sda/tests/, source data in sda/data/, and results in sda/output/. Import test utilities from \`vite-plus/test\`.
 
-For a single execution, run \`${runtime === "bun" ? "bun run sda/main.ts" : "node --env-file-if-exists=.env sda/main.ts"}\`. The sda script watches for changes. Before handing off code changes, run \`${run} all-tests\` and resolve failures.
+Run \`${run} sda\` to fix and check code, then execute the analysis once. Use \`${run} sda:watch\` to watch for changes. Before handing off code changes, run \`${run} all-tests\` and resolve failures.
+
+Before editing, check sda/.sda.pid. Verify that its PID belongs to this project's sda-run process from @nshiab/setup-data-project (dist/sda.mjs) using the process command and working directory. For a single run, wait for it to finish. For a watcher (--watch), stop it with SIGTERM and wait for it to exit; tell the user you stopped it and they can restart with \`${run} sda:watch\` afterward. Stale locks recover automatically on the next run. Leave active runs alone for read-only work.
 
 The clean script removes cached results and temporary files. Run it only when those cached results can be discarded.
 
@@ -365,11 +372,6 @@ ${getInstalledPackageConfigs(installedPackages).map((pkg) => {
 	});
 }
 //#endregion
-//#region src/helpers/jsonObject.ts
-function isObject(value) {
-	return value !== null && typeof value === "object" && !Array.isArray(value);
-}
-//#endregion
 //#region src/helpers/projectManifest.ts
 var ProjectManifest = class ProjectManifest {
 	#config;

package/dist/main.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"main.mjs","names":["process","metadata.version","process"],"sources":["../src/helpers/getRuntime.ts","../src/helpers/packageRegistry.ts","../src/helpers/packageOptions.ts","../src/helpers/gitignoreEntries.ts","../src/helpers/ensureGitignore.ts","../src/helpers/ensureManagedSection.ts","../src/helpers/ensureReadme.ts","../src/helpers/installPackages.ts","../src/helpers/ensureTooling.ts","../src/helpers/ensureVscode.ts","../package.json","../src/helpers/getProjectTasks.ts","../src/helpers/createFolderStructure.ts","../src/helpers/ensureEnvFile.ts","../src/helpers/ensureAgents.ts","../src/helpers/jsonObject.ts","../src/helpers/projectManifest.ts","../src/helpers/fetchPackageDocs.ts","../src/helpers/cleanPlotMarkdown.ts","../src/helpers/combinePlotDocs.ts","../src/helpers/plotDocPages.ts","../src/helpers/splitPlotDocs.ts","../src/helpers/fetchPlotDocs.ts","../src/helpers/syncPackageDocs.ts","../src/helpers/getInstalledPackageVersions.ts","../src/helpers/parseArguments.ts","../src/main.ts"],"sourcesContent":["import process from \"node:process\";\nexport type Runtime = \"node\" | \"bun\";\nexport function getRuntime(versions: { bun?: string; node?: string } = process.versions): Runtime {\n  return versions.bun ? \"bun\" : \"node\";\n}\n","export interface PackageConfig {\n  value: string;\n  label: string;\n  type: \"sda\" | \"journalism\" | \"other\";\n  hint?: string;\n}\n\nexport const SUPPORTED_PACKAGES: PackageConfig[] = [\n  {\n    value: \"@nshiab/simple-data-analysis\",\n    label: \"simple-data-analysis\",\n    type: \"sda\",\n    hint: \"All the core functionality, plus methods for dataviz, AI, Google sheets, etc.\",\n  },\n  {\n    value: \"@nshiab/simple-data-analysis-core\",\n    label: \"simple-data-analysis-core\",\n    type: \"sda\",\n    hint: \"No fluff. Great for constrained environments, like a cheap server.\",\n  },\n  {\n    value: \"@nshiab/journalism-ai\",\n    label: \"journalism-ai\",\n    type: \"journalism\",\n    hint: \"Easily use AI local models with Ollama or remote models with Gemini/Vertex.\",\n  },\n  {\n    value: \"@nshiab/journalism-google\",\n    label: \"journalism-google\",\n    type: \"journalism\",\n    hint: \"Push and retrieve data from Google Sheets, Google Bucket, and more.\",\n  },\n  {\n    value: \"@nshiab/journalism-web-scraping\",\n    label: \"journalism-web-scraping\",\n    type: \"journalism\",\n    hint: \"Retrieve data from Statistics Canada tables, HTML table, download files...\",\n  },\n  {\n    value: \"@nshiab/journalism-finance\",\n    label: \"journalism-finance\",\n    type: \"journalism\",\n    hint: \"Retrieve financial data, calculate Canadian mortgage payments and taxes...\",\n  },\n  {\n    value: \"@nshiab/journalism-format\",\n    label: \"journalism-format\",\n    type: \"journalism\",\n    hint: \"Easily format dates, numbers, currencies...\",\n  },\n  {\n    value: \"@nshiab/journalism-climate\",\n    label: \"journalism-climate\",\n    type: \"journalism\",\n    hint: \"Retrieve data from Environment Canada APIs and more.\",\n  },\n  {\n    value: \"@nshiab/journalism-dataviz\",\n    label: \"journalism-dataviz\",\n    type: \"journalism\",\n    hint: \"Render charts/maps with Observable Plot or directly in the terminal.\",\n  },\n  {\n    value: \"@nshiab/journalism-geo\",\n    label: \"journalism-geo\",\n    type: \"journalism\",\n    hint: \"Calculate distances, transform 2D coordinates to 3D, wrangle GeoTIFF files...\",\n  },\n  {\n    value: \"@nshiab/journalism-statistics\",\n    label: \"journalism-statistics\",\n    type: \"journalism\",\n    hint: \"Functions for statistical tests, clustering, random path generation...\",\n  },\n  {\n    value: \"@nshiab/journalism-web\",\n    label: \"journalism-web\",\n    type: \"journalism\",\n    hint: \"Web related functions, including downloading data as CSV, extracting ZIP files to URLs...\",\n  },\n  {\n    value: \"@nshiab/journalism-extras\",\n    label: \"journalism-extras\",\n    type: \"journalism\",\n    hint: \"Functions to zip/unzip, sleep, reencode files, create nested directories...\",\n  },\n];\n\n// Plot is installed alongside charting libraries, but is not a setup menu option.\nexport const DOCUMENTED_PACKAGES: PackageConfig[] = [\n  ...SUPPORTED_PACKAGES,\n  { value: \"@nshiab/journalism\", label: \"journalism\", type: \"journalism\" },\n  { value: \"@observablehq/plot\", label: \"Observable Plot\", type: \"other\" },\n];\n\nexport function getInstalledPackageConfigs(installedPackages: string[]): PackageConfig[] {\n  const installedSet = new Set(installedPackages);\n  return DOCUMENTED_PACKAGES.filter((pkg) => installedSet.has(pkg.value));\n}\n","import { SUPPORTED_PACKAGES } from \"./packageRegistry.ts\";\n\nexport const PACKAGE_OPTIONS = SUPPORTED_PACKAGES.map((pkg) => ({\n  value: pkg.value,\n  label: pkg.label,\n  hint: pkg.hint,\n}));\n","export const GITIGNORE_ENTRIES = [\n  \"node_modules\",\n  \"docs/\",\n  \".tmp\",\n  \".sda-cache\",\n  \".journalism-cache\",\n  \"sda/data\",\n  \"sda/output\",\n  \".env\",\n  \".DS_Store\",\n];\n","import { lstatSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { GITIGNORE_ENTRIES } from \"./gitignoreEntries.ts\";\n\nexport const GITIGNORE_SENTINEL = \"# Added by setup-data-project. Do not remove this line.\";\n\nexport function ensureGitignore() {\n  const path = \".gitignore\";\n  const stats = lstatSync(path, { throwIfNoEntry: false });\n\n  if (stats?.isSymbolicLink()) {\n    return;\n  }\n\n  const content = stats === undefined ? \"\" : readFileSync(path, \"utf-8\");\n  const hasSentinel = content.split(\"\\n\").some((line) => line.trim() === GITIGNORE_SENTINEL);\n\n  if (hasSentinel) {\n    const entries = new Set(content.split(\"\\n\").map((line) => line.trim()));\n    const missing = GITIGNORE_ENTRIES.filter((entry) => !entries.has(entry));\n    if (missing.length)\n      writeFileSync(\n        path,\n        content + (content.endsWith(\"\\n\") ? \"\" : \"\\n\") + missing.join(\"\\n\") + \"\\n\",\n      );\n    return;\n  }\n\n  const separator = content === \"\" ? \"\" : content.endsWith(\"\\n\") ? \"\\n\" : \"\\n\\n\";\n  const block = `${GITIGNORE_SENTINEL}\\n${GITIGNORE_ENTRIES.join(\"\\n\")}\\n`;\n  writeFileSync(path, content + separator + block);\n}\n","import { log } from \"@clack/prompts\";\nimport { existsSync, readFileSync, writeFileSync } from \"node:fs\";\n\ninterface ManagedSectionOptions {\n  path: string;\n  name: string;\n  content: string;\n  createContent: (section: string) => string;\n}\n\nexport function ensureManagedSection(\n  options: ManagedSectionOptions,\n): \"created\" | \"updated\" | \"unchanged\" | \"missing-markers\" {\n  const startMarker = `<!-- Do not remove / setup-data-project:${options.name}:start -->`;\n  const endMarker = `<!-- Do not remove / setup-data-project:${options.name}:end -->`;\n  const trimmedContent = options.content.trim();\n  const section =\n    trimmedContent === \"\"\n      ? `${startMarker}\\n${endMarker}`\n      : `${startMarker}\\n\\n${trimmedContent}\\n\\n${endMarker}`;\n\n  if (!existsSync(options.path)) {\n    writeFileSync(options.path, ensureFinalNewline(options.createContent(section)));\n    return \"created\";\n  }\n\n  const currentContent = readFileSync(options.path, \"utf-8\");\n  const start = currentContent.indexOf(startMarker);\n  const end = currentContent.indexOf(endMarker);\n\n  if (start === -1 || end === -1 || end < start) {\n    log.warn(\n      `${options.path} was not updated because its setup-data-project markers ` +\n        `were not found. Add ${startMarker} and ${endMarker}, then rerun the ` +\n        \"script.\",\n    );\n    return \"missing-markers\";\n  }\n\n  const nextContent =\n    currentContent.slice(0, start) + section + currentContent.slice(end + endMarker.length);\n\n  if (nextContent === currentContent) {\n    return \"unchanged\";\n  }\n\n  writeFileSync(options.path, ensureFinalNewline(nextContent));\n  return \"updated\";\n}\n\nfunction ensureFinalNewline(content: string): string {\n  return content.endsWith(\"\\n\") ? content : content + \"\\n\";\n}\n","import { ensureManagedSection } from \"./ensureManagedSection.ts\";\nimport { getInstalledPackageConfigs } from \"./packageRegistry.ts\";\nimport type { Runtime } from \"./getRuntime.ts\";\nexport function ensureReadme(runtime: Runtime, installedPackages: string[] = []) {\n  const run = runtime === \"bun\" ? \"bun run\" : \"npm run\";\n  const vp = runtime === \"bun\" ? \"bun run --bun vp\" : \"npx vp\";\n  const libraries = getInstalledPackageConfigs(installedPackages)\n    .map((pkg) => `\\`${pkg.value}\\``)\n    .join(\", \");\n  ensureManagedSection({\n    path: \"README.md\",\n    name: \"libraries\",\n    createContent: (section) =>\n      `# Data project\\n\\nCreated with [setup-data-project](https://github.com/nshiab/setup-data-project).\\n\\n${section}`,\n    content: `${libraries ? `Installed libraries: ${libraries}.\\n\\n` : \"\"}Use sda/main.ts to process source data from sda/data/ and write results to sda/output/. Both data folders are ignored by Git. Put reusable helpers in sda/helpers/ and tests in sda/tests/. Import test utilities from \\`vite-plus/test\\`.\n\n- \\`${run} sda\\`: run the analysis and watch for changes.\n- \\`${run} all-tests\\`: check types, lint, formatting, and tests; succeeds when no tests exist.\n- \\`${run} fix\\`: apply formatting and automatic fixes.\n- \\`${run} docs\\`: refresh documentation for the installed library versions.\n- \\`${run} clean\\`: delete cached results and temporary files in .sda-cache/, .journalism-cache/, and .tmp/.\n\nFor test-driven development, run one test file and watch for changes with \\`${vp} test sda/tests/example.test.ts --watch\\`. Replace the path with your test file.\n\nIn VS Code, install the recommended Vite+ extension pack for Oxc formatting and linting and the Vitest test runner. Generated .vscode/settings.json enables formatting and lint fixes on save, plus visual line wrapping. Existing VS Code configuration files are preserved.\n\nThe generated docs/ folder is ignored by Git. Refresh it after cloning or updating dependencies. See AGENTS.md for documentation pointers.`,\n  });\n}\n","import { execFile } from \"node:child_process\";\nimport { getRuntime } from \"./getRuntime.ts\";\nexport function runPackageManager(args: string[]): Promise<void> {\n  const command = getRuntime() === \"bun\" ? \"bun\" : process.platform === \"win32\" ? \"npm.cmd\" : \"npm\";\n  return new Promise((resolve, reject) => {\n    execFile(\n      command,\n      args,\n      { maxBuffer: 10 * 1024 * 1024, shell: process.platform === \"win32\" },\n      (error, stdout, stderr) => {\n        if (error)\n          reject(\n            new Error(`${command} ${args.join(\" \")} failed.\\n${stderr || stdout}`, {\n              cause: error,\n            }),\n          );\n        else resolve();\n      },\n    );\n  });\n}\nexport async function installPackages(\n  packages: string[],\n  options: { development?: boolean } = {},\n): Promise<void> {\n  if (packages.length === 0) return;\n  const bun = getRuntime() === \"bun\";\n  await runPackageManager([\n    bun ? \"add\" : \"install\",\n    ...(options.development ? (bun ? [\"--dev\"] : [\"--save-dev\"]) : []),\n    ...packages,\n  ]);\n}\n","import { existsSync, writeFileSync } from \"node:fs\";\nimport { ProjectManifest } from \"./projectManifest.ts\";\nimport { getRuntime } from \"./getRuntime.ts\";\nimport { installPackages } from \"./installPackages.ts\";\nconst tools = [\"vite-plus\", \"typescript\", \"@types/node\"];\nexport async function ensureTooling(manifest: ProjectManifest): Promise<void> {\n  const runtime = getRuntime();\n  const runtimeTools = runtime === \"bun\" ? [...tools, \"@types/bun\"] : tools;\n  const installed = manifest.getInstalledPackages();\n  await installPackages(\n    runtimeTools.filter((pkg) => !installed.includes(pkg)).map((pkg) => `${pkg}@latest`),\n    { development: true },\n  );\n  if (\n    ![\n      \"vite.config.ts\",\n      \"vite.config.js\",\n      \"vite.config.mts\",\n      \"vite.config.mjs\",\n      \"vite.config.cts\",\n      \"vite.config.cjs\",\n    ].some((file) => existsSync(file))\n  ) {\n    writeFileSync(\n      \"vite.config.ts\",\n      `import { defineConfig, loadEnv } from \"vite-plus\";\n\nexport default defineConfig({\n  test: { env: loadEnv(\"test\", process.cwd(), \"\") },\n  lint: { options: { typeAware: true, typeCheck: true } },\n  fmt: { ignorePatterns: [\"docs/**\", \"sda/data/**\", \"sda/output/**\"] },\n});\n`,\n    );\n  }\n  if (!existsSync(\"tsconfig.json\"))\n    writeFileSync(\n      \"tsconfig.json\",\n      `{\n  \"compilerOptions\": {\n    \"target\": \"ES2023\",\n    \"module\": \"NodeNext\",\n    \"strict\": true,\n    \"noEmit\": true,\n    \"allowImportingTsExtensions\": true,\n    \"erasableSyntaxOnly\": ${runtime === \"node\"},\n    \"types\": ${runtime === \"bun\" ? '[\"node\", \"bun\"]' : '[\"node\"]'},\n    \"skipLibCheck\": true\n  },\n  \"include\": [\"sda/**/*.ts\", \"vite.config.*\"]\n}\n`,\n    );\n}\n","import { existsSync, mkdirSync, writeFileSync } from \"node:fs\";\n\nexport function ensureVscode(): void {\n  mkdirSync(\".vscode\", { recursive: true });\n  const formatter = \"oxc.oxc-vscode\";\n  const files = {\n    \"extensions.json\": `{\n  \"recommendations\": [\"VoidZero.vite-plus-extension-pack\"]\n}\n`,\n    \"settings.json\": `${JSON.stringify(\n      {\n        \"editor.defaultFormatter\": formatter,\n        \"[javascript]\": { \"editor.defaultFormatter\": formatter },\n        \"[javascriptreact]\": { \"editor.defaultFormatter\": formatter },\n        \"[typescript]\": { \"editor.defaultFormatter\": formatter },\n        \"[typescriptreact]\": { \"editor.defaultFormatter\": formatter },\n        \"oxc.disableNestedConfig\": true,\n        \"oxc.fmt.disableNestedConfig\": true,\n        \"editor.formatOnSave\": true,\n        \"editor.formatOnSaveMode\": \"file\",\n        \"editor.codeActionsOnSave\": { \"source.fixAll.oxc\": \"explicit\" },\n        \"editor.wordWrap\": \"on\",\n      },\n      null,\n      2,\n    )}\\n`,\n  };\n  for (const [name, config] of Object.entries(files)) {\n    const path = `.vscode/${name}`;\n    if (!existsSync(path)) writeFileSync(path, config);\n  }\n}\n","","import { getRuntime, type Runtime } from \"./getRuntime.ts\";\nimport metadata from \"../../package.json\" with { type: \"json\" };\nexport function getProjectTasks(runtime: Runtime = getRuntime()) {\n  const vp = runtime === \"bun\" ? \"bun run --bun vp\" : \"vp\";\n  return {\n    sda:\n      runtime === \"bun\"\n        ? \"bun run --watch sda/main.ts\"\n        : \"node --env-file-if-exists=.env --watch sda/main.ts\",\n    \"all-tests\": `${vp} check && ${vp} test --passWithNoTests`,\n    clean: \"rm -rf .sda-cache .journalism-cache .tmp\",\n    fix: `${vp} check --fix`,\n    docs: `${runtime === \"bun\" ? \"bunx --bun\" : \"npx\"} @nshiab/setup-data-project@${metadata.version} --docs`,\n  };\n}\n","import { existsSync, lstatSync, mkdirSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\n\nexport function createFolderStructure(selectedPackages: string[]) {\n  const sdaFolder = \"sda\";\n  const folders = [\"data\", \"helpers\", \"output\", \"tests\"];\n\n  if (!existsSync(sdaFolder)) {\n    mkdirSync(sdaFolder, { recursive: true });\n  }\n\n  for (const folder of folders) {\n    const path = join(sdaFolder, folder);\n    if (!existsSync(path)) {\n      mkdirSync(path, { recursive: true });\n    }\n  }\n\n  const mainTsPath = join(sdaFolder, \"main.ts\");\n\n  let mainTsContent = 'console.log(\"Hello simple-data-analysis!\");\\n';\n\n  if (\n    selectedPackages.includes(\"@nshiab/simple-data-analysis\") ||\n    selectedPackages.includes(\"@nshiab/simple-data-analysis-core\")\n  ) {\n    const pkg = selectedPackages.includes(\"@nshiab/simple-data-analysis\")\n      ? \"@nshiab/simple-data-analysis\"\n      : \"@nshiab/simple-data-analysis-core\";\n    mainTsContent = `import { SimpleDB } from \"${pkg}\";\n\nconst sdb = new SimpleDB();\nconst table = sdb.newTable();\n\nawait table.loadArray([{ message: \"Hello simple-data-analysis!\" }]).log();\n\nawait sdb.close();\n`;\n  }\n\n  if (lstatSync(mainTsPath, { throwIfNoEntry: false }) === undefined) {\n    writeFileSync(mainTsPath, mainTsContent);\n  }\n\n  return sdaFolder;\n}\n","import { lstatSync, writeFileSync } from \"node:fs\";\n\nexport function ensureEnvFile() {\n  if (lstatSync(\".env\", { throwIfNoEntry: false }) === undefined) {\n    writeFileSync(\".env\", \"\");\n  }\n}\n","import type { PackageDocs } from \"./fetchPackageDocs.ts\";\nimport { ensureManagedSection } from \"./ensureManagedSection.ts\";\nimport { getInstalledPackageConfigs } from \"./packageRegistry.ts\";\nimport type { Runtime } from \"./getRuntime.ts\";\nexport function ensureAgents(\n  docsMapping: Record<string, PackageDocs>,\n  runtime: Runtime,\n  installedPackages: string[] = Object.keys(docsMapping),\n) {\n  const run = runtime === \"bun\" ? \"bun run\" : \"npm run\";\n  const command =\n    runtime === \"bun\" ? \"bun run sda/main.ts\" : \"node --env-file-if-exists=.env sda/main.ts\";\n  const links = getInstalledPackageConfigs(installedPackages).map((pkg) => {\n    if (pkg.value === \"@observablehq/plot\")\n      return `- Observable Plot charts and maps: start at \\`docs/observable-plot/llms.txt\\`, then read the relevant pages for use with writeChart and writeMap.`;\n    return `- \\`${pkg.value}\\`: start at \\`docs/${pkg.value.slice(\"@nshiab/\".length)}/llms.txt\\`, then read the relevant API pages and examples.`;\n  });\n  ensureManagedSection({\n    path: \"AGENTS.md\",\n    name: \"agents\",\n    createContent: (section) => section,\n    content: `Read package.json for the installed libraries and scripts. Prefer the installed data libraries when they cover the task.\n\nUse sda/main.ts as the entry point and sda/helpers/ for reusable helpers. Put tests in sda/tests/, source data in sda/data/, and results in sda/output/. Import test utilities from \\`vite-plus/test\\`.\n\nFor a single execution, run \\`${command}\\`. The sda script watches for changes. Before handing off code changes, run \\`${run} all-tests\\` and resolve failures.\n\nThe clean script removes cached results and temporary files. Run it only when those cached results can be discarded.\n\nLibrary documentation in docs/ is generated and ignored by Git. Run \\`${run} docs\\` when documentation is missing or after dependency changes; resolve refresh failures before using possibly stale references. Edit project source files rather than downloaded documentation.\n\n${links.join(\"\\n\")}`,\n  });\n}\n","export function isObject(value: unknown): value is Record<string, unknown> {\n  return value !== null && typeof value === \"object\" && !Array.isArray(value);\n}\n","import { existsSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { isObject } from \"./jsonObject.ts\";\nexport class ProjectManifest {\n  #config: Record<string, unknown>;\n  private constructor(config: Record<string, unknown>) {\n    this.#config = config;\n  }\n  static open(): ProjectManifest {\n    if (!existsSync(\"package.json\"))\n      return new ProjectManifest({ name: \"data-project\", private: true, type: \"module\" });\n    const config: unknown = JSON.parse(readFileSync(\"package.json\", \"utf8\"));\n    if (!isObject(config)) throw new Error(\"package.json must contain a JSON object.\");\n    return new ProjectManifest(config);\n  }\n  reload(): void {\n    this.#config = ProjectManifest.open().#config;\n  }\n  getInstalledPackages(): string[] {\n    return Object.keys(this.getInstalledPackageSpecifiers());\n  }\n  getInstalledPackageSpecifiers(): Record<string, string> {\n    const packages: Record<string, string> = {};\n    for (const key of [\"dependencies\", \"devDependencies\"]) {\n      const dependencies = this.#config[key];\n      if (isObject(dependencies))\n        for (const [name, version] of Object.entries(dependencies)) {\n          if (typeof version === \"string\") packages[name] = version;\n        }\n    }\n    return packages;\n  }\n  updateTasks(tasks: Record<string, string>): void {\n    if (this.#config.type === \"commonjs\") {\n      throw new Error(\n        'Setup requires an ESM project. Set \"type\": \"module\" in package.json, or use --docs to refresh documentation only.',\n      );\n    }\n    if (this.#config.type === undefined) this.#config.type = \"module\";\n    const existing = this.#config.scripts;\n    this.#config.scripts = { ...tasks, ...(isObject(existing) ? existing : {}) };\n    writeFileSync(\"package.json\", JSON.stringify(this.#config, null, 2) + \"\\n\");\n  }\n}\n","import { log } from \"@clack/prompts\";\nimport {\n  existsSync,\n  mkdirSync,\n  mkdtempSync,\n  readFileSync,\n  renameSync,\n  rmSync,\n  writeFileSync,\n} from \"node:fs\";\nimport { join, posix } from \"node:path\";\nimport { x } from \"tar\";\nimport { DOCUMENTED_PACKAGES } from \"./packageRegistry.ts\";\nexport interface PackageDocs {\n  readme?: string;\n  index?: string;\n  llm?: string;\n  plot?: { version: string; pages: string[] };\n}\nexport async function fetchPackageDocs(pkg: string, version: string): Promise<PackageDocs> {\n  const config = DOCUMENTED_PACKAGES.find(\n    (item) => item.value === pkg && item.value.startsWith(\"@nshiab/\"),\n  );\n  if (!config || !/^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/.test(version))\n    throw new Error(`Unsupported package or version: ${pkg}@${version}`);\n  const repo = pkg.slice(\"@nshiab/\".length);\n  mkdirSync(\"docs\", { recursive: true });\n  const staging = mkdtempSync(join(\"docs\", \".download-\"));\n  const contents = join(staging, \"contents\");\n  const target = join(\"docs\", repo);\n  const backup = join(staging, \"previous\");\n  try {\n    const url = `https://github.com/nshiab/${repo}/releases/download/v${version}/documentation.tar.gz`;\n    const response = await fetch(url);\n    if (!response.ok) throw new Error(`HTTP ${response.status} from ${url}`);\n    const archive = join(staging, \"documentation.tar.gz\");\n    writeFileSync(archive, Buffer.from(await response.arrayBuffer()));\n    mkdirSync(contents);\n    let unsafeEntry: string | undefined;\n    await x({\n      file: archive,\n      cwd: contents,\n      strict: true,\n      preservePaths: false,\n      filter(path, entry) {\n        const normalized = posix.normalize(path);\n        if (\n          path.includes(\"\\\\\") ||\n          path.startsWith(\"/\") ||\n          normalized === \"..\" ||\n          normalized.startsWith(\"../\") ||\n          !(\"type\" in entry) ||\n          ![\"File\", \"Directory\"].includes(entry.type)\n        ) {\n          unsafeEntry = path;\n          return false;\n        }\n        return true;\n      },\n    });\n    if (unsafeEntry !== undefined) throw new Error(`Unsafe archive entry: ${unsafeEntry}`);\n    for (const path of [\"README.md\", \"LICENSE\", \"llms.txt\", \"docs\"]) {\n      if (!existsSync(join(contents, path)))\n        throw new Error(`Documentation archive is missing ${path}.`);\n    }\n    const readme = readFileSync(join(contents, \"README.md\"), \"utf8\");\n    const index = readFileSync(join(contents, \"llms.txt\"), \"utf8\");\n    if (existsSync(target)) renameSync(target, backup);\n    try {\n      renameSync(contents, target);\n    } catch (error) {\n      if (existsSync(backup)) renameSync(backup, target);\n      throw error;\n    }\n    return { readme, index };\n  } catch (error) {\n    log.warn(\n      `Could not refresh ${pkg}@${version}: ${String(error)} Existing documentation was preserved and may be stale. Run the docs script again after resolving the error.`,\n    );\n    return {};\n  } finally {\n    rmSync(staging, { recursive: true, force: true });\n  }\n}\n","// Plot's source is VitePress Markdown. Keep examples as reference material,\n// but remove the website UI and turn its custom containers into ordinary text.\nexport function cleanPlotMarkdown(content: string): string {\n  const preserved: string[] = [];\n  const keep = (value: string) => {\n    preserved.push(value);\n    return `\\uE000PLOT${preserved.length - 1}\\uE000`;\n  };\n  const lines = content.split(\"\\n\");\n  const prose: string[] = [];\n  for (let index = 0; index < lines.length; index++) {\n    if (/^\\s*<!--/.test(lines[index])) {\n      const start = index;\n      while (!lines[index].includes(\"-->\") && index + 1 < lines.length) index++;\n      prose.push(lines.slice(start, index + 1).join(\"\\n\"));\n      continue;\n    }\n    const opening = lines[index].match(/^ {0,3}(`{3,}|~{3,})(.*)$/);\n    if (!opening) {\n      prose.push(lines[index]);\n      continue;\n    }\n    const start = index;\n    while (++index < lines.length) {\n      const closing = lines[index].match(/^ {0,3}(`{3,}|~{3,})\\s*$/);\n      if (closing?.[1][0] === opening[1][0] && closing[1].length >= opening[1].length) break;\n    }\n    if (index >= lines.length) throw new Error(\"Unclosed Plot code fence.\");\n    const block = lines.slice(start, index + 1);\n    if (opening[2].trim() === \"js-vue\") {\n      block[0] = `${opening[1]}text`;\n      prose.push(\n        keep(\n          \"Interactive example template (values in `{{…}}` come from the upstream website):\\n\\n\" +\n            block.join(\"\\n\"),\n        ),\n      );\n    } else {\n      prose.push(keep(block.join(\"\\n\")));\n    }\n  }\n  let result = prose\n    .join(\"\\n\")\n    .replace(/<script\\b[^>]*>([\\s\\S]*?)<\\/script>/g, (_match: string, code: string) => {\n      const fence = \"`\".repeat(\n        Math.max(3, ...[...code.matchAll(/`+/g)].map((match) => match[0].length + 1)),\n      );\n      return keep(\n        `**Upstream example setup.** This code may use Vue and sample data from the linked source page.\\n\\n${fence}js\\n${code.trim()}\\n${fence}`,\n      );\n    })\n    .replace(/^[ \\t]*<!--(?!\\s*setup-data-project:)[\\s\\S]*?-->/gm, \"\")\n    .replace(\n      /<\\/?[A-Za-z](?:\"[^\"]*\"|'[^']*'|[^'\"><])*>|(`+)[^`\\n]*?\\1/g,\n      (part: string, fence: string | undefined) => (fence ? keep(part) : part),\n    )\n    .replace(/<style\\b[^>]*>[\\s\\S]*?<\\/style>/g, \"\")\n    .replace(/<p\\b[^>]*>([\\s\\S]*?)<\\/p>/g, (_match: string, body: string) =>\n      /<(?:input|select|label)\\b/.test(body) ? \"\" : body,\n    )\n    .replace(/<PlotRender\\b[\\s\\S]*?\\/>/g, (component) => {\n      const options = component.match(/:options=([\"'])([\\s\\S]*?)\\1/)?.[2];\n      const method = component.match(/\\bmethod=[\"'](\\w+)[\"']/)?.[1] ?? \"plot\";\n      if (!options) throw new Error(\"Unrecognized PlotRender example.\");\n      return keep(`\\`\\`\\`js\\nPlot.${method}(${options});\\n\\`\\`\\``);\n    })\n    .replace(/<VersionBadge\\b[\\s\\S]*?\\/>/g, (badge) => {\n      const version = badge.match(/\\bversion=[\"']([^\"']+)[\"']/)?.[1];\n      return version ? `(since v${version})` : \"\";\n    })\n    .replace(/<\\/?span\\b(?:\"[^\"]*\"|'[^']*'|[^'\">])*>/g, \"\")\n    .replace(/<svg\\b[\\s\\S]*?<\\/svg>/g, \"arrow\");\n  result = result\n    .replace(/^[ \\t]*:::plot\\b([^\\n]*)/gm, (_match: string, options: string) => {\n      const url = options.match(/https?:\\/\\/\\S+/)?.[0];\n      return url ? `[Interactive example](${url})\\n` : \"\";\n    })\n    .replace(\n      /^([ \\t]*):::(tip|info|warning)\\b[ \\t]*/gm,\n      (_match: string, indent: string, kind: string) =>\n        `${indent}**${kind[0].toUpperCase() + kind.slice(1)}:** `,\n    )\n    .replace(/^[ \\t]*:::[ \\t]*$/gm, \"\")\n    .replace(/[ \\t]+:::[ \\t]*$/gm, \"\")\n    .replace(\n      /\\{\\{([\\s\\S]*?)\\}\\}/g,\n      (_match: string, expression: string) => `\\`${expression.trim().replace(/\\s+/g, \" \")}\\``,\n    )\n    .replace(/[ \\t]+$/gm, \"\")\n    .replace(/\\n{3,}/g, \"\\n\\n\")\n    .trim();\n  return (\n    result.replace(\n      /\\uE000PLOT(\\d+)\\uE000/g,\n      (_match: string, index: string) => preserved[Number(index)],\n    ) + \"\\n\"\n  );\n}\n","import { cleanPlotMarkdown } from \"./cleanPlotMarkdown.ts\";\nimport { posix } from \"node:path\";\n\n// The Plot source uses ATX headings, explicit VitePress IDs, and Markdown fences.\n// Keep code verbatim; rewrite only prose links and anchors while joining pages.\nexport function combinePlotDocs(version: string, documents: Map<string, string>): string {\n  const pages = [...documents.keys()].sort();\n  const source = `https://github.com/observablehq/plot/tree/v${version}/docs`;\n  const anchors = new Map<string, Map<string, string>>();\n  const sections = new Map<string, { line: number; title: string; id: string }[]>();\n  const pageId = (page: string) => `plot-${page.replace(/\\.md$/, \"\").replaceAll(\"/\", \"--\")}`;\n\n  for (const page of pages) {\n    const ids = new Map<string, string>();\n    const headings: { line: number; title: string; id: string }[] = [];\n    const counts = new Map<string, number>();\n    proseLines(documents.get(page) ?? \"\", (line, number) => {\n      for (const match of line.matchAll(/\\bid=[\"']([^\"']+)[\"']/g)) {\n        ids.set(match[1], `${pageId(page)}--${match[1]}`);\n      }\n      const heading = line.match(/^ {0,3}#{1,6}\\s+(.+?)\\s*#*\\s*$/);\n      if (!heading) return line;\n      const explicit = heading[1].match(/\\{#([^}]+)\\}/)?.[1];\n      const title = heading[1].replace(/\\s*\\{#[^}]+\\}/g, \"\");\n      const slug =\n        explicit ??\n        title\n          .replace(/<[^>]*>/g, \"\")\n          .toLowerCase()\n          .replace(/[^\\p{L}\\p{N}_\\s-]/gu, \"\")\n          .trim()\n          .replace(/\\s+/g, \"-\");\n      const count = counts.get(slug) ?? 0;\n      counts.set(slug, count + 1);\n      const localId = `${slug}${count ? `-${count}` : \"\"}`;\n      const id = `${pageId(page)}--${localId}`;\n      ids.set(localId, id);\n      headings.push({ line: number, title, id });\n      return line;\n    });\n    anchors.set(page, ids);\n    sections.set(page, headings);\n  }\n\n  function link(target: string, page: string): string {\n    if (/^(?:[a-z][a-z\\d+.-]*:|\\/\\/)/i.test(target)) return target;\n    const [pathAndQuery, fragment] = target.split(\"#\", 2);\n    const path = pathAndQuery.split(\"?\", 1)[0];\n    const resolved =\n      path === \"\"\n        ? page\n        : posix.normalize(\n            path.startsWith(\"/\") ? path.slice(1) : posix.join(posix.dirname(page), path),\n          );\n    const markdown = [resolved, `${resolved}.md`, `${resolved}/index.md`].find((candidate) =>\n      documents.has(candidate),\n    );\n    if (markdown) {\n      const id = fragment\n        ? anchors.get(markdown)?.get(decodeURIComponent(fragment))\n        : pageId(markdown);\n      if (id) return `#${id}`;\n      // Preserve an upstream target when a fragment is not a known heading/ID.\n      return `${source}/${markdown}${fragment ? `#${fragment}` : \"\"}`;\n    }\n    if (resolved.endsWith(\".md\")) {\n      return `${source}/${resolved}${fragment ? `#${fragment}` : \"\"}`;\n    }\n    const base =\n      \"https://raw.githubusercontent.com/observablehq/plot/\" + `refs/tags/v${version}/docs/`;\n    return path.startsWith(\"/\")\n      ? new URL(`public${target}`, base).href\n      : new URL(target, `${base}${page}`).href;\n  }\n\n  const contents = pages\n    .flatMap((page) => [\n      `- [${page}](#${pageId(page)})`,\n      ...(sections.get(page) ?? []).map(\n        ({ title, id }) => `  - [${title.replace(/[[\\]]/g, \"\")}](#${id})`,\n      ),\n    ])\n    .join(\"\\n\");\n  const combined = pages\n    .map((page) => {\n      const headings = new Map(\n        (sections.get(page) ?? []).map((heading) => [heading.line, heading]),\n      );\n      const body = proseLines(documents.get(page) ?? \"\", (line, number) => {\n        const heading = headings.get(number);\n        // Inline code also remains verbatim. Plot's prose links have simple destinations.\n        line = line\n          .split(/(`+[^`]*`+)/g)\n          .map((part, index) => {\n            if (index % 2) return part;\n            return part\n              .replace(\n                /(\\]\\()([^\\s)]+)([^)]*\\))/g,\n                (_match: string, before: string, target: string, after: string) =>\n                  `${before}${link(target, page)}${after}`,\n              )\n              .replace(\n                /^( {0,3}\\[[^\\]]+\\]:\\s*)(\\S+)/,\n                (_match: string, before: string, target: string) =>\n                  `${before}${link(target, page)}`,\n              )\n              .replace(\n                /(?<!:)\\b(href|src)=([\"'])([^\"']+)\\2/g,\n                (_match: string, attr: string, quote: string, target: string) =>\n                  `${attr}=${quote}${link(target, page)}${quote}`,\n              )\n              .replace(\n                /\\bid=([\"'])([^\"']+)\\1/g,\n                (_match: string, quote: string, id: string) =>\n                  `id=${quote}${anchors.get(page)?.get(id) ?? id}${quote}`,\n              );\n          })\n          .join(\"\");\n        return heading\n          ? `<a id=\"${heading.id}\"></a>\\n\\n${line.replace(/\\s*\\{#[^}]+\\}/g, \"\")}`\n          : line;\n      });\n      return `<a id=\"${pageId(page)}\"></a>\\n\\n# ${page}\\n\\nSource: ${source}/${page}\\n\\n${body}`;\n    })\n    .join(\"\\n\\n---\\n\\n\");\n  return cleanPlotMarkdown(\n    `# Observable Plot ${version}\\n\\nPackage: \\`@observablehq/plot@${version}\\`. Source: [v${version}](${source}).\\n\\nThis reference combines selected upstream documentation for static charts and maps. Introductory and site pages, interaction helpers, and the Auto and Tip marks are omitted. Website controls are omitted; upstream setup and interactive templates are labeled as reference code. Use the table of contents to find API signatures and examples; links to omitted pages lead to the tagged upstream documentation.\\n\\n## Table of contents\\n\\n${contents}\\n\\n---\\n\\n${combined}\\n\\n<!-- setup-data-project:observable-plot:${version}:complete -->\\n`,\n  );\n}\n\nexport function proseLines(\n  content: string,\n  transform: (line: string, number: number) => string,\n): string {\n  let fence: { character: string; length: number } | undefined;\n  let script = false;\n  return content\n    .split(\"\\n\")\n    .map((line, number) => {\n      const marker = line.match(/^ {0,3}(`{3,}|~{3,})/);\n      if (fence) {\n        if (\n          marker?.[1][0] === fence.character &&\n          marker[1].length >= fence.length &&\n          /^ {0,3}(?:`+|~+)\\s*$/.test(line)\n        )\n          fence = undefined;\n        return line;\n      }\n      if (marker) {\n        fence = { character: marker[1][0], length: marker[1].length };\n        return line;\n      }\n      if (/^\\s*<script\\b/.test(line)) script = true;\n      if (script) {\n        if (/<\\/script>/.test(line)) script = false;\n        return line;\n      }\n      return transform(line, number);\n    })\n    .join(\"\\n\");\n}\n","// Static chart creation references. Keep this explicit so new upstream pages do\n// not silently expand the installed agent reference.\nexport const PLOT_DOC_PAGES: string[] = [\n  \"features/plots.md\",\n  \"features/marks.md\",\n  \"features/scales.md\",\n  \"features/projections.md\",\n  \"features/legends.md\",\n  \"features/facets.md\",\n  \"features/formats.md\",\n  \"features/curves.md\",\n  \"transforms/bin.md\",\n  \"transforms/group.md\",\n  \"transforms/stack.md\",\n  \"transforms/normalize.md\",\n  \"transforms/centroid.md\",\n  \"transforms/sort.md\",\n  \"marks/area.md\",\n  \"marks/arrow.md\",\n  \"marks/axis.md\",\n  \"marks/bar.md\",\n  \"marks/bollinger.md\",\n  \"marks/box.md\",\n  \"marks/cell.md\",\n  \"marks/contour.md\",\n  \"marks/delaunay.md\",\n  \"marks/density.md\",\n  \"marks/difference.md\",\n  \"marks/dot.md\",\n  \"marks/frame.md\",\n  \"marks/geo.md\",\n  \"marks/grid.md\",\n  \"marks/hexgrid.md\",\n  \"marks/image.md\",\n  \"marks/line.md\",\n  \"marks/linear-regression.md\",\n  \"marks/link.md\",\n  \"marks/raster.md\",\n  \"marks/rect.md\",\n  \"marks/rule.md\",\n  \"marks/text.md\",\n  \"marks/tick.md\",\n  \"marks/tree.md\",\n  \"marks/vector.md\",\n  \"marks/waffle.md\",\n].sort();\n","import { cleanPlotMarkdown } from \"./cleanPlotMarkdown.ts\";\nimport { posix } from \"node:path\";\nimport { proseLines } from \"./combinePlotDocs.ts\";\nimport { PLOT_DOC_PAGES } from \"./plotDocPages.ts\";\n\n// Split the cached format without changing code examples or heading anchors.\nexport function splitPlotDocs(reference: string, version: string): Map<string, string> {\n  const sections = [\n    ...reference.matchAll(\n      /<a id=\"(plot-[^\"]+)\"><\\/a>\\n\\n# ([^\\n]+\\.md)\\n\\nSource:\\s+([^\\s]+)\\n\\n/g,\n    ),\n  ];\n  const files = new Map<string, string>();\n  const anchors = new Map<string, string>();\n  const source = `https://github.com/observablehq/plot/tree/v${version}/docs`;\n  const completion = `<!-- setup-data-project:observable-plot:${version}:complete -->`;\n  if (!reference.trimEnd().endsWith(completion)) throw new Error(\"Incomplete Plot reference.\");\n  const end = reference.lastIndexOf(completion);\n  const licenseStart = reference.lastIndexOf(\"\\n## Upstream license\\n\", end);\n  for (let index = 0; index < sections.length; index++) {\n    const section = sections[index];\n    const page = section[2];\n    if (!PLOT_DOC_PAGES.includes(page) || files.has(page) || section[3] !== `${source}/${page}`)\n      throw new Error(`Invalid Plot page: ${page}`);\n    const body = reference\n      .slice(section.index, sections[index + 1]?.index ?? (licenseStart >= 0 ? licenseStart : end))\n      .trimEnd()\n      .replace(/\\n\\n---$/, \"\");\n    files.set(page, body);\n    proseLines(body, (line) => {\n      for (const match of line.matchAll(/\\bid=[\"']([^\"']+)[\"']/g)) anchors.set(match[1], page);\n      return line;\n    });\n  }\n  if (files.size !== PLOT_DOC_PAGES.length) throw new Error(\"Incomplete Plot pages.\");\n\n  for (const [page, body] of files) {\n    const link = (id: string) => {\n      const destination = anchors.get(id);\n      return destination && destination !== page\n        ? `${posix.relative(posix.dirname(page), destination)}#${id}`\n        : `#${id}`;\n    };\n    files.set(\n      page,\n      cleanPlotMarkdown(\n        proseLines(body, (line) =>\n          line\n            .split(/(`+[^`]*`+)/g)\n            .map((part, index) =>\n              index % 2\n                ? part\n                : part\n                    .replace(\n                      /(\\]\\()#([^\\s)]+)([^)]*\\))/g,\n                      (_match: string, before: string, id: string, after: string) =>\n                        `${before}${link(id)}${after}`,\n                    )\n                    .replace(\n                      /^( {0,3}\\[[^\\]]+\\]:\\s*)#(\\S+)/,\n                      (_match: string, before: string, id: string) => `${before}${link(id)}`,\n                    )\n                    .replace(\n                      /(?<!:)\\b(href|src)=([\"'])#([^\"']+)\\2/g,\n                      (_match: string, attr: string, quote: string, id: string) =>\n                        `${attr}=${quote}${link(id)}${quote}`,\n                    ),\n            )\n            .join(\"\"),\n        ),\n      ),\n    );\n  }\n  const license =\n    licenseStart >= 0\n      ? reference.slice(licenseStart + \"\\n## Upstream license\\n\".length, end).trim()\n      : undefined;\n  if (license) files.set(\"LICENSE\", license + \"\\n\");\n  const index =\n    `# Observable Plot ${version}\\n\\n> Selected documentation for static charts and maps. Start here, then read the relevant pages.\\n\\n[Versioned upstream documentation](${source})${license ? \" · [License](./LICENSE)\" : \"\"}\\n\\n` +\n    [\"features\", \"marks\", \"transforms\"]\n      .map(\n        (group) =>\n          `## ${group[0].toUpperCase() + group.slice(1)}\\n\\n` +\n          PLOT_DOC_PAGES.filter((page) => page.startsWith(`${group}/`))\n            .map((page) => `- [${page}](./${page})`)\n            .join(\"\\n\"),\n      )\n      .join(\"\\n\\n\") +\n    \"\\n\";\n  files.set(\"llms.txt\", index);\n  return files;\n}\n","import { log } from \"@clack/prompts\";\nimport { existsSync, mkdirSync, mkdtempSync, renameSync, rmSync, writeFileSync } from \"node:fs\";\nimport { dirname, join } from \"node:path\";\nimport { splitPlotDocs } from \"./splitPlotDocs.ts\";\nimport { combinePlotDocs } from \"./combinePlotDocs.ts\";\nimport { PLOT_DOC_PAGES } from \"./plotDocPages.ts\";\nimport type { PackageDocs } from \"./fetchPackageDocs.ts\";\n\n// Replace local documentation only after every page is ready.\nexport async function fetchPlotDocs(\n  version: string,\n  options: { preferStored?: boolean } = {},\n): Promise<PackageDocs> {\n  const tag = `v${version}`;\n  const directory = join(\"docs\", \"observable-plot\");\n  try {\n    let llm: string | undefined;\n    if (options.preferStored !== false) {\n      try {\n        const response = await fetch(\n          \"https://raw.githubusercontent.com/nshiab/setup-data-project/\" +\n            `refs/heads/main/docs-cache/observable-plot/${version}/llm.md`,\n        );\n        if (response.ok) {\n          const cached = await response.text();\n          if (isStoredReference(cached, version)) llm = cached;\n        }\n      } catch {\n        // A cache is an optimization. An unavailable cache never blocks the tag.\n      }\n    }\n    if (llm === undefined) llm = await generatePlotReference(version);\n    const files = splitPlotDocs(llm, version);\n    mkdirSync(\"docs\", { recursive: true });\n    const staging = mkdtempSync(join(\"docs\", \".plot-\"));\n    const contents = join(staging, \"contents\");\n    const backup = join(staging, \"previous\");\n    try {\n      for (const [page, content] of files) {\n        const path = join(contents, page);\n        mkdirSync(dirname(path), { recursive: true });\n        writeFileSync(path, content);\n      }\n      if (existsSync(directory)) renameSync(directory, backup);\n      try {\n        renameSync(contents, directory);\n      } catch (error) {\n        if (existsSync(backup)) renameSync(backup, directory);\n        throw error;\n      }\n    } finally {\n      rmSync(staging, { recursive: true, force: true });\n    }\n    return { llm, index: files.get(\"llms.txt\"), plot: { version, pages: [...PLOT_DOC_PAGES] } };\n  } catch (error) {\n    log.warn(\n      `Could not fetch complete Observable Plot documentation for ${tag}. ` +\n        \"Existing files were preserved, but may not match the installed \" +\n        \"version. Resolve the refresh failure before using this reference. \" +\n        String(error),\n    );\n    return {};\n  }\n}\n\nexport async function generatePlotReference(version: string): Promise<string> {\n  if (!/^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?$/.test(version))\n    throw new Error(\"An exact Plot version is required.\");\n  const tag = `v${version}`;\n  const pages = PLOT_DOC_PAGES;\n  const documents = new Map<string, string>();\n  const failed: string[] = [];\n  // Fetch in small batches to avoid overwhelming GitHub on the first run.\n  for (let offset = 0; offset < pages.length; offset += 8) {\n    await Promise.all(\n      pages.slice(offset, offset + 8).map(async (page) => {\n        try {\n          const url =\n            \"https://raw.githubusercontent.com/observablehq/plot/\" +\n            `refs/tags/${tag}/docs/${page}`;\n          const response = await fetch(url);\n          if (!response.ok) throw new Error(`HTTP ${response.status}`);\n          const content = await response.text();\n          documents.set(page, content);\n        } catch {\n          failed.push(page);\n        }\n      }),\n    );\n  }\n\n  if (failed.length > 0) {\n    throw new Error(`Could not fetch ${failed.length} Markdown pages`);\n  }\n  const response = await fetch(\n    `https://raw.githubusercontent.com/observablehq/plot/refs/tags/${tag}/LICENSE`,\n  );\n  if (!response.ok) throw new Error(`Could not fetch Plot's license: HTTP ${response.status}`);\n  const license = await response.text();\n  const completion = `<!-- setup-data-project:observable-plot:${version}:complete -->`;\n  return combinePlotDocs(version, documents).replace(\n    completion,\n    `## Upstream license\\n\\n${license.trim()}\\n\\n${completion}`,\n  );\n}\n\nfunction isStoredReference(content: string, version: string): boolean {\n  const source = `https://github.com/observablehq/plot/tree/v${version}/docs`;\n  const metadata = content.split(/\\n\\s*\\n/)[1]?.replace(/\\s+/g, \" \");\n  if (\n    !content.startsWith(`# Observable Plot ${version}\\n\\n`) ||\n    metadata !== `Package: \\`@observablehq/plot@${version}\\`. Source: [v${version}](${source}).` ||\n    !content.trimEnd().endsWith(`<!-- setup-data-project:observable-plot:${version}:complete -->`)\n  )\n    return false;\n\n  // Match actual page sections, not TOC entries. Require every selected page\n  // exactly once and some upstream heading/content after its source record.\n  const sections = [\n    ...content.matchAll(/<a id=\"(plot-[^\"]+)\"><\\/a>\\n\\n# ([^\\n]+\\.md)\\n\\nSource:\\s+([^\\s]+)\\n\\n/g),\n  ];\n  if (sections.length !== PLOT_DOC_PAGES.length) return false;\n  const found = new Set<string>();\n  for (let index = 0; index < sections.length; index++) {\n    const section = sections[index];\n    const page = section[2];\n    const id = `plot-${page.replace(/\\.md$/, \"\").replaceAll(\"/\", \"--\")}`;\n    if (\n      !PLOT_DOC_PAGES.includes(page) ||\n      found.has(page) ||\n      section[1] !== id ||\n      section[3] !== `${source}/${page}`\n    )\n      return false;\n    const body = content.slice(section.index + section[0].length, sections[index + 1]?.index);\n    if (!/^#{1,6}\\s+\\S/m.test(body)) return false;\n    found.add(page);\n  }\n  return true;\n}\n","import { log } from \"@clack/prompts\";\nimport { fetchPackageDocs, type PackageDocs } from \"./fetchPackageDocs.ts\";\nimport { fetchPlotDocs } from \"./fetchPlotDocs.ts\";\nimport { getInstalledPackageConfigs } from \"./packageRegistry.ts\";\nexport async function syncPackageDocs(\n  installedPackages: string[],\n  installedVersions: Record<string, string>,\n): Promise<Record<string, PackageDocs>> {\n  const mapping: Record<string, PackageDocs> = {};\n  for (const pkg of getInstalledPackageConfigs(installedPackages)) {\n    const version = installedVersions[pkg.value];\n    if (!version) {\n      log.warn(\n        `Could not determine the installed version of ${pkg.value}. Install the project dependencies, then run the docs script again. Existing documentation may be stale.`,\n      );\n      continue;\n    }\n    const docs =\n      pkg.value === \"@observablehq/plot\"\n        ? await fetchPlotDocs(version)\n        : await fetchPackageDocs(pkg.value, version);\n    if (docs.index !== undefined || docs.plot) mapping[pkg.value] = docs;\n  }\n  return mapping;\n}\n","import { existsSync, readFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { isObject } from \"./jsonObject.ts\";\nexport function getInstalledPackageVersions(\n  packageSpecifiers: Record<string, string>,\n): Record<string, string> {\n  const versions: Record<string, string> = {};\n  for (const pkg of Object.keys(packageSpecifiers)) {\n    const path = join(\"node_modules\", pkg, \"package.json\");\n    if (!existsSync(path)) continue;\n    const config: unknown = JSON.parse(readFileSync(path, \"utf8\"));\n    if (\n      isObject(config) &&\n      typeof config.version === \"string\" &&\n      /^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/.test(config.version)\n    )\n      versions[pkg] = config.version;\n  }\n  return versions;\n}\n","import { SUPPORTED_PACKAGES } from \"./packageRegistry.ts\";\n\nexport interface CliOptions {\n  help: boolean;\n  docs: boolean;\n  packages: string[];\n}\n\nconst packageFlags = new Map(\n  SUPPORTED_PACKAGES.map((pkg) => [\n    `--${pkg.label.replace(/^simple-data-analysis/, \"sda\").replace(/^journalism-/, \"\")}`,\n    pkg.value,\n  ]),\n);\n\nexport const CLI_HELP = `Usage: setup-data-project [library flags | --docs] [--help]\n\n${Array.from(packageFlags, ([flag, pkg]) => `  ${flag.padEnd(16)} Select ${pkg}.`).join(\"\\n\")}\n  --docs            Refresh documentation only for installed libraries.\n  -h, --help        Show this help and exit.\n\nWithout a package flag, choose packages interactively.\nCombine package flags to select libraries without prompting.\nPackage flags keep existing versions and still set up project files and docs.`;\n\nexport function parseArguments(args: string[]): CliOptions {\n  const options: CliOptions = { help: false, docs: false, packages: [] };\n\n  for (const arg of args) {\n    const pkg = packageFlags.get(arg);\n    if (arg === \"--help\" || arg === \"-h\") {\n      options.help = true;\n    } else if (arg === \"--docs\") {\n      options.docs = true;\n    } else if (pkg) {\n      if (!options.packages.includes(pkg)) options.packages.push(pkg);\n    } else {\n      throw new Error(`Unknown argument: ${arg}. Use --help for usage.`);\n    }\n  }\n\n  if (options.docs && options.packages.length > 0)\n    throw new Error(\"--docs cannot be combined with package flags.\");\n  return options;\n}\n","#!/usr/bin/env node\nimport { cancel, intro, isCancel, multiselect, outro, select, spinner } from \"@clack/prompts\";\nimport process from \"node:process\";\nimport { execFileSync } from \"node:child_process\";\n\nimport { getRuntime } from \"./helpers/getRuntime.ts\";\nimport { PACKAGE_OPTIONS } from \"./helpers/packageOptions.ts\";\nimport { ensureGitignore } from \"./helpers/ensureGitignore.ts\";\nimport { ensureReadme } from \"./helpers/ensureReadme.ts\";\nimport { ensureTooling } from \"./helpers/ensureTooling.ts\";\nimport { ensureVscode } from \"./helpers/ensureVscode.ts\";\nimport { runPackageManager, installPackages } from \"./helpers/installPackages.ts\";\nimport { getProjectTasks } from \"./helpers/getProjectTasks.ts\";\nimport { createFolderStructure } from \"./helpers/createFolderStructure.ts\";\nimport { ensureEnvFile } from \"./helpers/ensureEnvFile.ts\";\nimport { ensureAgents } from \"./helpers/ensureAgents.ts\";\nimport { getInstalledPackageConfigs } from \"./helpers/packageRegistry.ts\";\nimport { ProjectManifest } from \"./helpers/projectManifest.ts\";\nimport { syncPackageDocs } from \"./helpers/syncPackageDocs.ts\";\nimport { getInstalledPackageVersions } from \"./helpers/getInstalledPackageVersions.ts\";\nimport { CLI_HELP, parseArguments } from \"./helpers/parseArguments.ts\";\n\nasync function main() {\n  const cliOptions = parseArguments(process.argv.slice(2));\n  if (cliOptions.help) {\n    console.log(CLI_HELP);\n    return;\n  }\n\n  const runtime = getRuntime();\n  const projectManifest = ProjectManifest.open();\n  if (cliOptions.docs) {\n    await refreshDocs(projectManifest);\n    return;\n  }\n  console.log();\n  intro(`Hi! 👋 (Running on ${runtime})`);\n\n  const installedPackages = projectManifest.getInstalledPackages();\n  const options = PACKAGE_OPTIONS.map((opt) => ({\n    ...opt,\n    label: installedPackages.includes(opt.value)\n      ? `${opt.label} \\x1b[2m(installed)\\x1b[22m`\n      : opt.label,\n  }));\n\n  const selectedPackages =\n    cliOptions.packages.length > 0\n      ? cliOptions.packages\n      : await multiselect({\n          message:\n            \"Which libraries would you like to install?\\n\\x1b[2m(space to select, arrows to navigate, enter to confirm)\\x1b[22m\\n\",\n          options,\n          required: false,\n        });\n\n  if (isCancel(selectedPackages)) {\n    cancel(\"Installation cancelled.\");\n    process.exit(0);\n  }\n\n  const alreadyInstalled = selectedPackages.filter((pkg) => installedPackages.includes(pkg));\n\n  const packagesToInstall: string[] = [];\n\n  for (const pkg of selectedPackages) {\n    if (alreadyInstalled.includes(pkg)) {\n      if (cliOptions.packages.length > 0) continue;\n\n      const action = await select({\n        message: `${pkg} is already installed. What would you like to do?`,\n        options: [\n          { value: \"skip\", label: \"Keep existing version\" },\n          { value: \"update\", label: \"Update to latest\" },\n        ],\n      });\n\n      if (isCancel(action)) {\n        cancel(\"Installation cancelled.\");\n        process.exit(0);\n      }\n\n      if (action === \"update\") {\n        packagesToInstall.push(pkg);\n      }\n    } else {\n      packagesToInstall.push(pkg);\n    }\n  }\n\n  projectManifest.updateTasks(getProjectTasks(runtime));\n\n  const sInstall = spinner();\n  sInstall.start(\"Installing packages...\");\n\n  try {\n    await installPackages(packagesToInstall);\n    projectManifest.reload();\n    const declared = projectManifest.getInstalledPackageSpecifiers();\n    if (\n      projectManifest\n        .getInstalledPackages()\n        .some((pkg) =>\n          [\"@nshiab/simple-data-analysis\", \"@nshiab/journalism-dataviz\"].includes(pkg),\n        ) &&\n      !declared[\"@observablehq/plot\"]\n    ) {\n      await installPackages([\"@observablehq/plot\"]);\n      projectManifest.reload();\n    }\n    await ensureTooling(projectManifest);\n    // Reinstall declared dependencies when a project was cloned without node_modules.\n    projectManifest.reload();\n    const versions = getInstalledPackageVersions(projectManifest.getInstalledPackageSpecifiers());\n    if (projectManifest.getInstalledPackages().some((pkg) => !versions[pkg]))\n      await runPackageManager([\"install\"]);\n  } catch (error) {\n    sInstall.stop(\"Package installation failed.\");\n    throw error;\n  }\n  sInstall.stop(\"Packages installed.\");\n\n  projectManifest.reload();\n  const finalInstalledPackages = getInstalledPackageConfigs(\n    projectManifest.getInstalledPackages(),\n  ).map((pkg) => pkg.value);\n  const docsMapping = await refreshDocs(projectManifest);\n\n  const sConfig = spinner();\n  sConfig.start(\"Preparing project files and configuration...\");\n  try {\n    projectManifest.updateTasks(getProjectTasks());\n    execFileSync(process.execPath, [\"node_modules/vite-plus/bin/vp\", \"fmt\", \"package.json\"], {\n      stdio: \"pipe\",\n    });\n\n    createFolderStructure(finalInstalledPackages);\n    ensureGitignore();\n    ensureEnvFile();\n    ensureVscode();\n    ensureReadme(runtime, finalInstalledPackages);\n    ensureAgents(docsMapping, runtime, finalInstalledPackages);\n  } catch (error) {\n    sConfig.stop(\"Project configuration failed.\");\n    throw error;\n  }\n  sConfig.stop(\"Project files and configuration ready.\");\n\n  outro(\n    process.exitCode\n      ? \"Project setup complete; documentation needs attention.\"\n      : \"You are all set! 🙌\",\n  );\n}\n\nasync function refreshDocs(manifest: ProjectManifest) {\n  const packages = getInstalledPackageConfigs(manifest.getInstalledPackages()).map(\n    (pkg) => pkg.value,\n  );\n  const sDocs = spinner();\n  sDocs.start(\"Downloading documentation...\");\n  try {\n    const mapping = await syncPackageDocs(\n      packages,\n      getInstalledPackageVersions(manifest.getInstalledPackageSpecifiers()),\n    );\n    if (Object.keys(mapping).length !== packages.length) {\n      sDocs.stop(\"Documentation incomplete. See the warnings above.\");\n      process.exitCode = 1;\n    } else {\n      sDocs.stop(\n        packages.length > 0 ? \"Documentation downloaded.\" : \"No library documentation to download.\",\n      );\n    }\n    return mapping;\n  } catch (error) {\n    sDocs.stop(\"Documentation download failed.\");\n    throw error;\n  }\n}\n\nmain().catch((error) => {\n  const message = error instanceof Error ? error.message : String(error);\n  console.error(`❌ Error: ${message}`);\n  process.exitCode = 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+{"version":3,"file":"main.mjs","names":["process","metadata.name","metadata.version","metadata.version","process"],"sources":["../src/helpers/getRuntime.ts","../src/helpers/packageRegistry.ts","../src/helpers/packageOptions.ts","../src/helpers/gitignoreEntries.ts","../src/helpers/ensureGitignore.ts","../src/helpers/ensureManagedSection.ts","../src/helpers/ensureReadme.ts","../src/helpers/installPackages.ts","../package.json","../src/helpers/ensureTooling.ts","../src/helpers/ensureVscode.ts","../src/helpers/getProjectTasks.ts","../src/helpers/createFolderStructure.ts","../src/helpers/ensureEnvFile.ts","../src/helpers/ensureAgents.ts","../src/helpers/projectManifest.ts","../src/helpers/fetchPackageDocs.ts","../src/helpers/cleanPlotMarkdown.ts","../src/helpers/combinePlotDocs.ts","../src/helpers/plotDocPages.ts","../src/helpers/splitPlotDocs.ts","../src/helpers/fetchPlotDocs.ts","../src/helpers/syncPackageDocs.ts","../src/helpers/getInstalledPackageVersions.ts","../src/helpers/parseArguments.ts","../src/main.ts"],"sourcesContent":["import process from \"node:process\";\nexport type Runtime = \"node\" | \"bun\";\nexport function getRuntime(versions: { bun?: string; node?: string } = process.versions): Runtime {\n  return versions.bun ? \"bun\" : \"node\";\n}\n","export interface PackageConfig {\n  value: string;\n  label: string;\n  type: \"sda\" | \"journalism\" | \"other\";\n  hint?: string;\n}\n\nexport const SUPPORTED_PACKAGES: PackageConfig[] = [\n  {\n    value: \"@nshiab/simple-data-analysis\",\n    label: \"simple-data-analysis\",\n    type: \"sda\",\n    hint: \"All the core functionality, plus methods for dataviz, AI, Google sheets, etc.\",\n  },\n  {\n    value: \"@nshiab/simple-data-analysis-core\",\n    label: \"simple-data-analysis-core\",\n    type: \"sda\",\n    hint: \"No fluff. Great for constrained environments, like a cheap server.\",\n  },\n  {\n    value: \"@nshiab/journalism-ai\",\n    label: \"journalism-ai\",\n    type: \"journalism\",\n    hint: \"Easily use AI local models with Ollama or remote models with Gemini/Vertex.\",\n  },\n  {\n    value: \"@nshiab/journalism-google\",\n    label: \"journalism-google\",\n    type: \"journalism\",\n    hint: \"Push and retrieve data from Google Sheets, Google Bucket, and more.\",\n  },\n  {\n    value: \"@nshiab/journalism-web-scraping\",\n    label: \"journalism-web-scraping\",\n    type: \"journalism\",\n    hint: \"Retrieve data from Statistics Canada tables, HTML table, download files...\",\n  },\n  {\n    value: \"@nshiab/journalism-finance\",\n    label: \"journalism-finance\",\n    type: \"journalism\",\n    hint: \"Retrieve financial data, calculate Canadian mortgage payments and taxes...\",\n  },\n  {\n    value: \"@nshiab/journalism-format\",\n    label: \"journalism-format\",\n    type: \"journalism\",\n    hint: \"Easily format dates, numbers, currencies...\",\n  },\n  {\n    value: \"@nshiab/journalism-climate\",\n    label: \"journalism-climate\",\n    type: \"journalism\",\n    hint: \"Retrieve data from Environment Canada APIs and more.\",\n  },\n  {\n    value: \"@nshiab/journalism-dataviz\",\n    label: \"journalism-dataviz\",\n    type: \"journalism\",\n    hint: \"Render charts/maps with Observable Plot or directly in the terminal.\",\n  },\n  {\n    value: \"@nshiab/journalism-geo\",\n    label: \"journalism-geo\",\n    type: \"journalism\",\n    hint: \"Calculate distances, transform 2D coordinates to 3D, wrangle GeoTIFF files...\",\n  },\n  {\n    value: \"@nshiab/journalism-statistics\",\n    label: \"journalism-statistics\",\n    type: \"journalism\",\n    hint: \"Functions for statistical tests, clustering, random path generation...\",\n  },\n  {\n    value: \"@nshiab/journalism-web\",\n    label: \"journalism-web\",\n    type: \"journalism\",\n    hint: \"Web related functions, including downloading data as CSV, extracting ZIP files to URLs...\",\n  },\n  {\n    value: \"@nshiab/journalism-extras\",\n    label: \"journalism-extras\",\n    type: \"journalism\",\n    hint: \"Functions to zip/unzip, sleep, reencode files, create nested directories...\",\n  },\n];\n\n// Plot is installed alongside charting libraries, but is not a setup menu option.\nexport const DOCUMENTED_PACKAGES: PackageConfig[] = [\n  ...SUPPORTED_PACKAGES,\n  { value: \"@nshiab/journalism\", label: \"journalism\", type: \"journalism\" },\n  { value: \"@observablehq/plot\", label: \"Observable Plot\", type: \"other\" },\n];\n\nexport function getInstalledPackageConfigs(installedPackages: string[]): PackageConfig[] {\n  const installedSet = new Set(installedPackages);\n  return DOCUMENTED_PACKAGES.filter((pkg) => installedSet.has(pkg.value));\n}\n","import { SUPPORTED_PACKAGES } from \"./packageRegistry.ts\";\n\nexport const PACKAGE_OPTIONS = SUPPORTED_PACKAGES.map((pkg) => ({\n  value: pkg.value,\n  label: pkg.label,\n  hint: pkg.hint,\n}));\n","export const GITIGNORE_ENTRIES = [\n  \"node_modules\",\n  \"docs/\",\n  \".tmp\",\n  \".sda-cache\",\n  \"sda/.sda.pid\",\n  \"sda/.sda-lock/\",\n  \".journalism-cache\",\n  \"sda/data\",\n  \"sda/output\",\n  \".env\",\n  \".DS_Store\",\n];\n","import { lstatSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { GITIGNORE_ENTRIES } from \"./gitignoreEntries.ts\";\n\nexport const GITIGNORE_SENTINEL = \"# Added by setup-data-project. Do not remove this line.\";\n\nexport function ensureGitignore() {\n  const path = \".gitignore\";\n  const stats = lstatSync(path, { throwIfNoEntry: false });\n\n  if (stats?.isSymbolicLink()) {\n    return;\n  }\n\n  const content = stats === undefined ? \"\" : readFileSync(path, \"utf-8\");\n  const hasSentinel = content.split(\"\\n\").some((line) => line.trim() === GITIGNORE_SENTINEL);\n\n  if (hasSentinel) {\n    const entries = new Set(content.split(\"\\n\").map((line) => line.trim()));\n    const missing = GITIGNORE_ENTRIES.filter((entry) => !entries.has(entry));\n    if (missing.length)\n      writeFileSync(\n        path,\n        content + (content.endsWith(\"\\n\") ? \"\" : \"\\n\") + missing.join(\"\\n\") + \"\\n\",\n      );\n    return;\n  }\n\n  const separator = content === \"\" ? \"\" : content.endsWith(\"\\n\") ? \"\\n\" : \"\\n\\n\";\n  const block = `${GITIGNORE_SENTINEL}\\n${GITIGNORE_ENTRIES.join(\"\\n\")}\\n`;\n  writeFileSync(path, content + separator + block);\n}\n","import { log } from \"@clack/prompts\";\nimport { existsSync, readFileSync, writeFileSync } from \"node:fs\";\n\ninterface ManagedSectionOptions {\n  path: string;\n  name: string;\n  content: string;\n  createContent: (section: string) => string;\n}\n\nexport function ensureManagedSection(\n  options: ManagedSectionOptions,\n): \"created\" | \"updated\" | \"unchanged\" | \"missing-markers\" {\n  const startMarker = `<!-- Do not remove / setup-data-project:${options.name}:start -->`;\n  const endMarker = `<!-- Do not remove / setup-data-project:${options.name}:end -->`;\n  const trimmedContent = options.content.trim();\n  const section =\n    trimmedContent === \"\"\n      ? `${startMarker}\\n${endMarker}`\n      : `${startMarker}\\n\\n${trimmedContent}\\n\\n${endMarker}`;\n\n  if (!existsSync(options.path)) {\n    writeFileSync(options.path, ensureFinalNewline(options.createContent(section)));\n    return \"created\";\n  }\n\n  const currentContent = readFileSync(options.path, \"utf-8\");\n  const start = currentContent.indexOf(startMarker);\n  const end = currentContent.indexOf(endMarker);\n\n  if (start === -1 || end === -1 || end < start) {\n    log.warn(\n      `${options.path} was not updated because its setup-data-project markers ` +\n        `were not found. Add ${startMarker} and ${endMarker}, then rerun the ` +\n        \"script.\",\n    );\n    return \"missing-markers\";\n  }\n\n  const nextContent =\n    currentContent.slice(0, start) + section + currentContent.slice(end + endMarker.length);\n\n  if (nextContent === currentContent) {\n    return \"unchanged\";\n  }\n\n  writeFileSync(options.path, ensureFinalNewline(nextContent));\n  return \"updated\";\n}\n\nfunction ensureFinalNewline(content: string): string {\n  return content.endsWith(\"\\n\") ? content : content + \"\\n\";\n}\n","import { ensureManagedSection } from \"./ensureManagedSection.ts\";\nimport { getInstalledPackageConfigs } from \"./packageRegistry.ts\";\nimport type { Runtime } from \"./getRuntime.ts\";\nexport function ensureReadme(runtime: Runtime, installedPackages: string[] = []) {\n  const run = runtime === \"bun\" ? \"bun run\" : \"npm run\";\n  const vp = runtime === \"bun\" ? \"bun run --bun vp\" : \"npx vp\";\n  const libraries = getInstalledPackageConfigs(installedPackages)\n    .map((pkg) => `\\`${pkg.value}\\``)\n    .join(\", \");\n  ensureManagedSection({\n    path: \"README.md\",\n    name: \"libraries\",\n    createContent: (section) =>\n      `# Data project\\n\\nCreated with [setup-data-project](https://github.com/nshiab/setup-data-project).\\n\\n${section}`,\n    content: `${libraries ? `Installed libraries: ${libraries}.\\n\\n` : \"\"}Use sda/main.ts to process source data from sda/data/ and write results to sda/output/. Both data folders are ignored by Git. Put reusable helpers in sda/helpers/ and tests in sda/tests/. Import test utilities from \\`vite-plus/test\\`.\n\n- \\`${run} sda\\`: run \\`${run} fix\\`, then run the analysis once if checks pass.\n- \\`${run} sda:watch\\`: do the same on changes to sda/ and .env, excluding sda/output/.\n- \\`${run} all-tests\\`: check types, lint, formatting, and tests; succeeds when no tests exist.\n- \\`${run} fix\\`: apply formatting and automatic fixes.\n- \\`${run} docs\\`: refresh documentation for the installed library versions.\n- \\`${run} clean\\`: delete cached results and temporary files in .sda-cache/, .journalism-cache/, and .tmp/.\n\nSDA blocks simultaneous runs. Recovery after a forced termination is best effort.\n\nFor test-driven development, run one test file and watch for changes with \\`${vp} test sda/tests/example.test.ts --watch\\`. Replace the path with your test file.\n\nIn VS Code, install the recommended Vite+ extension pack for Oxc formatting and linting and the Vitest test runner. Generated .vscode/settings.json enables formatting and lint fixes on save, plus visual line wrapping. Existing VS Code configuration files are preserved.\n\nThe generated docs/ folder is ignored by Git. Refresh it after cloning or updating dependencies. See AGENTS.md for documentation pointers.`,\n  });\n}\n","import { execFile } from \"node:child_process\";\nimport { getRuntime } from \"./getRuntime.ts\";\nexport function runPackageManager(args: string[]): Promise<void> {\n  const command = getRuntime() === \"bun\" ? \"bun\" : process.platform === \"win32\" ? \"npm.cmd\" : \"npm\";\n  return new Promise((resolve, reject) => {\n    execFile(\n      command,\n      args,\n      { maxBuffer: 10 * 1024 * 1024, shell: process.platform === \"win32\" },\n      (error, stdout, stderr) => {\n        if (error)\n          reject(\n            new Error(`${command} ${args.join(\" \")} failed.\\n${stderr || stdout}`, {\n              cause: error,\n            }),\n          );\n        else resolve();\n      },\n    );\n  });\n}\nexport async function installPackages(\n  packages: string[],\n  options: { development?: boolean } = {},\n): Promise<void> {\n  if (packages.length === 0) return;\n  const bun = getRuntime() === \"bun\";\n  await runPackageManager([\n    bun ? \"add\" : \"install\",\n    ...(options.development ? (bun ? [\"--dev\"] : [\"--save-dev\"]) : []),\n    ...packages,\n  ]);\n}\n","","import { existsSync, writeFileSync } from \"node:fs\";\nimport { ProjectManifest } from \"./projectManifest.ts\";\nimport { getRuntime } from \"./getRuntime.ts\";\nimport { installPackages } from \"./installPackages.ts\";\nimport metadata from \"../../package.json\" with { type: \"json\" };\nconst tools = [\"vite-plus\", \"@types/node\"];\nexport async function ensureTooling(manifest: ProjectManifest): Promise<void> {\n  const runtime = getRuntime();\n  const runtimeTools = runtime === \"bun\" ? [...tools, \"@types/bun\"] : tools;\n  const installed = manifest.getInstalledPackages();\n  await installPackages(\n    [\n      ...runtimeTools.filter((pkg) => !installed.includes(pkg)).map((pkg) => `${pkg}@latest`),\n      ...(installed.includes(metadata.name) ? [] : [`${metadata.name}@${metadata.version}`]),\n    ],\n    { development: true },\n  );\n  if (\n    ![\n      \"vite.config.ts\",\n      \"vite.config.js\",\n      \"vite.config.mts\",\n      \"vite.config.mjs\",\n      \"vite.config.cts\",\n      \"vite.config.cjs\",\n    ].some((file) => existsSync(file))\n  ) {\n    writeFileSync(\n      \"vite.config.ts\",\n      `import { defineConfig, loadEnv } from \"vite-plus\";\n\nexport default defineConfig({\n  test: { env: loadEnv(\"test\", process.cwd(), \"\") },\n  lint: { options: { typeAware: true, typeCheck: true } },\n  fmt: { ignorePatterns: [\"docs/**\", \"sda/data/**\", \"sda/output/**\"] },\n});\n`,\n    );\n  }\n  if (!existsSync(\"tsconfig.json\"))\n    writeFileSync(\n      \"tsconfig.json\",\n      `{\n  \"compilerOptions\": {\n    \"target\": \"ES2023\",\n    \"module\": \"NodeNext\",\n    \"strict\": true,\n    \"noEmit\": true,\n    \"allowImportingTsExtensions\": true,\n    \"erasableSyntaxOnly\": ${runtime === \"node\"},\n    \"types\": ${runtime === \"bun\" ? '[\"node\", \"bun\"]' : '[\"node\"]'},\n    \"skipLibCheck\": true\n  },\n  \"include\": [\"sda/**/*.ts\", \"vite.config.*\"]\n}\n`,\n    );\n}\n","import { existsSync, mkdirSync, writeFileSync } from \"node:fs\";\n\nexport function ensureVscode(): void {\n  mkdirSync(\".vscode\", { recursive: true });\n  const formatter = \"oxc.oxc-vscode\";\n  const files = {\n    \"extensions.json\": `{\n  \"recommendations\": [\"VoidZero.vite-plus-extension-pack\"]\n}\n`,\n    \"settings.json\": `${JSON.stringify(\n      {\n        \"editor.defaultFormatter\": formatter,\n        \"[javascript]\": { \"editor.defaultFormatter\": formatter },\n        \"[javascriptreact]\": { \"editor.defaultFormatter\": formatter },\n        \"[typescript]\": { \"editor.defaultFormatter\": formatter },\n        \"[typescriptreact]\": { \"editor.defaultFormatter\": formatter },\n        \"oxc.disableNestedConfig\": true,\n        \"oxc.fmt.disableNestedConfig\": true,\n        \"editor.formatOnSave\": true,\n        \"editor.formatOnSaveMode\": \"file\",\n        \"editor.codeActionsOnSave\": { \"source.fixAll.oxc\": \"explicit\" },\n        \"editor.wordWrap\": \"on\",\n      },\n      null,\n      2,\n    )}\\n`,\n  };\n  for (const [name, config] of Object.entries(files)) {\n    const path = `.vscode/${name}`;\n    if (!existsSync(path)) writeFileSync(path, config);\n  }\n}\n","import { getRuntime, type Runtime } from \"./getRuntime.ts\";\nimport metadata from \"../../package.json\" with { type: \"json\" };\nexport function getProjectTasks(runtime: Runtime = getRuntime()) {\n  const vp = runtime === \"bun\" ? \"bun run --bun vp\" : \"vp\";\n  const runner = runtime === \"bun\" ? \"bun run --bun --no-env-file sda-run\" : \"sda-run\";\n  return {\n    sda: `${runner} sda/main.ts`,\n    \"sda:watch\": `${runner} --watch sda/main.ts sda .env --ignore sda/output`,\n    \"all-tests\": `${vp} check && ${vp} test --passWithNoTests`,\n    clean: \"rm -rf .sda-cache .journalism-cache .tmp\",\n    fix: `${vp} check --fix`,\n    docs: `${runtime === \"bun\" ? \"bunx --bun\" : \"npx\"} @nshiab/setup-data-project@${metadata.version} --docs`,\n  };\n}\n","import { existsSync, lstatSync, mkdirSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\n\nexport function createFolderStructure(selectedPackages: string[]) {\n  const sdaFolder = \"sda\";\n  const folders = [\"data\", \"helpers\", \"output\", \"tests\"];\n\n  if (!existsSync(sdaFolder)) {\n    mkdirSync(sdaFolder, { recursive: true });\n  }\n\n  for (const folder of folders) {\n    const path = join(sdaFolder, folder);\n    if (!existsSync(path)) {\n      mkdirSync(path, { recursive: true });\n    }\n  }\n\n  const mainTsPath = join(sdaFolder, \"main.ts\");\n\n  let mainTsContent = 'console.log(\"Hello simple-data-analysis!\");\\n';\n\n  if (\n    selectedPackages.includes(\"@nshiab/simple-data-analysis\") ||\n    selectedPackages.includes(\"@nshiab/simple-data-analysis-core\")\n  ) {\n    const pkg = selectedPackages.includes(\"@nshiab/simple-data-analysis\")\n      ? \"@nshiab/simple-data-analysis\"\n      : \"@nshiab/simple-data-analysis-core\";\n    mainTsContent = `import { SimpleDB } from \"${pkg}\";\n\nconst sdb = new SimpleDB();\nconst table = sdb.newTable();\n\nawait table.loadArray([{ message: \"Hello simple-data-analysis!\" }]).log();\n\nawait sdb.close();\n`;\n  }\n\n  if (lstatSync(mainTsPath, { throwIfNoEntry: false }) === undefined) {\n    writeFileSync(mainTsPath, mainTsContent);\n  }\n\n  return sdaFolder;\n}\n","import { lstatSync, writeFileSync } from \"node:fs\";\n\nexport function ensureEnvFile() {\n  if (lstatSync(\".env\", { throwIfNoEntry: false }) === undefined) {\n    writeFileSync(\".env\", \"\");\n  }\n}\n","import type { PackageDocs } from \"./fetchPackageDocs.ts\";\nimport { ensureManagedSection } from \"./ensureManagedSection.ts\";\nimport { getInstalledPackageConfigs } from \"./packageRegistry.ts\";\nimport type { Runtime } from \"./getRuntime.ts\";\nexport function ensureAgents(\n  docsMapping: Record<string, PackageDocs>,\n  runtime: Runtime,\n  installedPackages: string[] = Object.keys(docsMapping),\n) {\n  const run = runtime === \"bun\" ? \"bun run\" : \"npm run\";\n  const links = getInstalledPackageConfigs(installedPackages).map((pkg) => {\n    if (pkg.value === \"@observablehq/plot\")\n      return `- Observable Plot charts and maps: start at \\`docs/observable-plot/llms.txt\\`, then read the relevant pages for use with writeChart and writeMap.`;\n    return `- \\`${pkg.value}\\`: start at \\`docs/${pkg.value.slice(\"@nshiab/\".length)}/llms.txt\\`, then read the relevant API pages and examples.`;\n  });\n  ensureManagedSection({\n    path: \"AGENTS.md\",\n    name: \"agents\",\n    createContent: (section) => section,\n    content: `Read package.json for the installed libraries and scripts. Prefer the installed data libraries when they cover the task.\n\nUse sda/main.ts as the entry point and sda/helpers/ for reusable helpers. Put tests in sda/tests/, source data in sda/data/, and results in sda/output/. Import test utilities from \\`vite-plus/test\\`.\n\nRun \\`${run} sda\\` to fix and check code, then execute the analysis once. Use \\`${run} sda:watch\\` to watch for changes. Before handing off code changes, run \\`${run} all-tests\\` and resolve failures.\n\nBefore editing, check sda/.sda.pid. Verify that its PID belongs to this project's sda-run process from @nshiab/setup-data-project (dist/sda.mjs) using the process command and working directory. For a single run, wait for it to finish. For a watcher (--watch), stop it with SIGTERM and wait for it to exit; tell the user you stopped it and they can restart with \\`${run} sda:watch\\` afterward. Stale locks recover automatically on the next run. Leave active runs alone for read-only work.\n\nThe clean script removes cached results and temporary files. Run it only when those cached results can be discarded.\n\nLibrary documentation in docs/ is generated and ignored by Git. Run \\`${run} docs\\` when documentation is missing or after dependency changes; resolve refresh failures before using possibly stale references. Edit project source files rather than downloaded documentation.\n\n${links.join(\"\\n\")}`,\n  });\n}\n","import { existsSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { isObject } from \"./jsonObject.ts\";\nexport class ProjectManifest {\n  #config: Record<string, unknown>;\n  private constructor(config: Record<string, unknown>) {\n    this.#config = config;\n  }\n  static open(): ProjectManifest {\n    if (!existsSync(\"package.json\"))\n      return new ProjectManifest({ name: \"data-project\", private: true, type: \"module\" });\n    const config: unknown = JSON.parse(readFileSync(\"package.json\", \"utf8\"));\n    if (!isObject(config)) throw new Error(\"package.json must contain a JSON object.\");\n    return new ProjectManifest(config);\n  }\n  reload(): void {\n    this.#config = ProjectManifest.open().#config;\n  }\n  getInstalledPackages(): string[] {\n    return Object.keys(this.getInstalledPackageSpecifiers());\n  }\n  getInstalledPackageSpecifiers(): Record<string, string> {\n    const packages: Record<string, string> = {};\n    for (const key of [\"dependencies\", \"devDependencies\"]) {\n      const dependencies = this.#config[key];\n      if (isObject(dependencies))\n        for (const [name, version] of Object.entries(dependencies)) {\n          if (typeof version === \"string\") packages[name] = version;\n        }\n    }\n    return packages;\n  }\n  updateTasks(tasks: Record<string, string>): void {\n    if (this.#config.type === \"commonjs\") {\n      throw new Error(\n        'Setup requires an ESM project. Set \"type\": \"module\" in package.json, or use --docs to refresh documentation only.',\n      );\n    }\n    if (this.#config.type === undefined) this.#config.type = \"module\";\n    const existing = this.#config.scripts;\n    this.#config.scripts = { ...tasks, ...(isObject(existing) ? existing : {}) };\n    writeFileSync(\"package.json\", JSON.stringify(this.#config, null, 2) + \"\\n\");\n  }\n}\n","import { log } from \"@clack/prompts\";\nimport {\n  existsSync,\n  mkdirSync,\n  mkdtempSync,\n  readFileSync,\n  renameSync,\n  rmSync,\n  writeFileSync,\n} from \"node:fs\";\nimport { join, posix } from \"node:path\";\nimport { x } from \"tar\";\nimport { DOCUMENTED_PACKAGES } from \"./packageRegistry.ts\";\nexport interface PackageDocs {\n  readme?: string;\n  index?: string;\n  llm?: string;\n  plot?: { version: string; pages: string[] };\n}\nexport async function fetchPackageDocs(pkg: string, version: string): Promise<PackageDocs> {\n  const config = DOCUMENTED_PACKAGES.find(\n    (item) => item.value === pkg && item.value.startsWith(\"@nshiab/\"),\n  );\n  if (!config || !/^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/.test(version))\n    throw new Error(`Unsupported package or version: ${pkg}@${version}`);\n  const repo = pkg.slice(\"@nshiab/\".length);\n  mkdirSync(\"docs\", { recursive: true });\n  const staging = mkdtempSync(join(\"docs\", \".download-\"));\n  const contents = join(staging, \"contents\");\n  const target = join(\"docs\", repo);\n  const backup = join(staging, \"previous\");\n  try {\n    const url = `https://github.com/nshiab/${repo}/releases/download/v${version}/documentation.tar.gz`;\n    const response = await fetch(url);\n    if (!response.ok) throw new Error(`HTTP ${response.status} from ${url}`);\n    const archive = join(staging, \"documentation.tar.gz\");\n    writeFileSync(archive, Buffer.from(await response.arrayBuffer()));\n    mkdirSync(contents);\n    let unsafeEntry: string | undefined;\n    await x({\n      file: archive,\n      cwd: contents,\n      strict: true,\n      preservePaths: false,\n      filter(path, entry) {\n        const normalized = posix.normalize(path);\n        if (\n          path.includes(\"\\\\\") ||\n          path.startsWith(\"/\") ||\n          normalized === \"..\" ||\n          normalized.startsWith(\"../\") ||\n          !(\"type\" in entry) ||\n          ![\"File\", \"Directory\"].includes(entry.type)\n        ) {\n          unsafeEntry = path;\n          return false;\n        }\n        return true;\n      },\n    });\n    if (unsafeEntry !== undefined) throw new Error(`Unsafe archive entry: ${unsafeEntry}`);\n    for (const path of [\"README.md\", \"LICENSE\", \"llms.txt\", \"docs\"]) {\n      if (!existsSync(join(contents, path)))\n        throw new Error(`Documentation archive is missing ${path}.`);\n    }\n    const readme = readFileSync(join(contents, \"README.md\"), \"utf8\");\n    const index = readFileSync(join(contents, \"llms.txt\"), \"utf8\");\n    if (existsSync(target)) renameSync(target, backup);\n    try {\n      renameSync(contents, target);\n    } catch (error) {\n      if (existsSync(backup)) renameSync(backup, target);\n      throw error;\n    }\n    return { readme, index };\n  } catch (error) {\n    log.warn(\n      `Could not refresh ${pkg}@${version}: ${String(error)} Existing documentation was preserved and may be stale. Run the docs script again after resolving the error.`,\n    );\n    return {};\n  } finally {\n    rmSync(staging, { recursive: true, force: true });\n  }\n}\n","// Plot's source is VitePress Markdown. Keep examples as reference material,\n// but remove the website UI and turn its custom containers into ordinary text.\nexport function cleanPlotMarkdown(content: string): string {\n  const preserved: string[] = [];\n  const keep = (value: string) => {\n    preserved.push(value);\n    return `\\uE000PLOT${preserved.length - 1}\\uE000`;\n  };\n  const lines = content.split(\"\\n\");\n  const prose: string[] = [];\n  for (let index = 0; index < lines.length; index++) {\n    if (/^\\s*<!--/.test(lines[index])) {\n      const start = index;\n      while (!lines[index].includes(\"-->\") && index + 1 < lines.length) index++;\n      prose.push(lines.slice(start, index + 1).join(\"\\n\"));\n      continue;\n    }\n    const opening = lines[index].match(/^ {0,3}(`{3,}|~{3,})(.*)$/);\n    if (!opening) {\n      prose.push(lines[index]);\n      continue;\n    }\n    const start = index;\n    while (++index < lines.length) {\n      const closing = lines[index].match(/^ {0,3}(`{3,}|~{3,})\\s*$/);\n      if (closing?.[1][0] === opening[1][0] && closing[1].length >= opening[1].length) break;\n    }\n    if (index >= lines.length) throw new Error(\"Unclosed Plot code fence.\");\n    const block = lines.slice(start, index + 1);\n    if (opening[2].trim() === \"js-vue\") {\n      block[0] = `${opening[1]}text`;\n      prose.push(\n        keep(\n          \"Interactive example template (values in `{{…}}` come from the upstream website):\\n\\n\" +\n            block.join(\"\\n\"),\n        ),\n      );\n    } else {\n      prose.push(keep(block.join(\"\\n\")));\n    }\n  }\n  let result = prose\n    .join(\"\\n\")\n    .replace(/<script\\b[^>]*>([\\s\\S]*?)<\\/script>/g, (_match: string, code: string) => {\n      const fence = \"`\".repeat(\n        Math.max(3, ...[...code.matchAll(/`+/g)].map((match) => match[0].length + 1)),\n      );\n      return keep(\n        `**Upstream example setup.** This code may use Vue and sample data from the linked source page.\\n\\n${fence}js\\n${code.trim()}\\n${fence}`,\n      );\n    })\n    .replace(/^[ \\t]*<!--(?!\\s*setup-data-project:)[\\s\\S]*?-->/gm, \"\")\n    .replace(\n      /<\\/?[A-Za-z](?:\"[^\"]*\"|'[^']*'|[^'\"><])*>|(`+)[^`\\n]*?\\1/g,\n      (part: string, fence: string | undefined) => (fence ? keep(part) : part),\n    )\n    .replace(/<style\\b[^>]*>[\\s\\S]*?<\\/style>/g, \"\")\n    .replace(/<p\\b[^>]*>([\\s\\S]*?)<\\/p>/g, (_match: string, body: string) =>\n      /<(?:input|select|label)\\b/.test(body) ? \"\" : body,\n    )\n    .replace(/<PlotRender\\b[\\s\\S]*?\\/>/g, (component) => {\n      const options = component.match(/:options=([\"'])([\\s\\S]*?)\\1/)?.[2];\n      const method = component.match(/\\bmethod=[\"'](\\w+)[\"']/)?.[1] ?? \"plot\";\n      if (!options) throw new Error(\"Unrecognized PlotRender example.\");\n      return keep(`\\`\\`\\`js\\nPlot.${method}(${options});\\n\\`\\`\\``);\n    })\n    .replace(/<VersionBadge\\b[\\s\\S]*?\\/>/g, (badge) => {\n      const version = badge.match(/\\bversion=[\"']([^\"']+)[\"']/)?.[1];\n      return version ? `(since v${version})` : \"\";\n    })\n    .replace(/<\\/?span\\b(?:\"[^\"]*\"|'[^']*'|[^'\">])*>/g, \"\")\n    .replace(/<svg\\b[\\s\\S]*?<\\/svg>/g, \"arrow\");\n  result = result\n    .replace(/^[ \\t]*:::plot\\b([^\\n]*)/gm, (_match: string, options: string) => {\n      const url = options.match(/https?:\\/\\/\\S+/)?.[0];\n      return url ? `[Interactive example](${url})\\n` : \"\";\n    })\n    .replace(\n      /^([ \\t]*):::(tip|info|warning)\\b[ \\t]*/gm,\n      (_match: string, indent: string, kind: string) =>\n        `${indent}**${kind[0].toUpperCase() + kind.slice(1)}:** `,\n    )\n    .replace(/^[ \\t]*:::[ \\t]*$/gm, \"\")\n    .replace(/[ \\t]+:::[ \\t]*$/gm, \"\")\n    .replace(\n      /\\{\\{([\\s\\S]*?)\\}\\}/g,\n      (_match: string, expression: string) => `\\`${expression.trim().replace(/\\s+/g, \" \")}\\``,\n    )\n    .replace(/[ \\t]+$/gm, \"\")\n    .replace(/\\n{3,}/g, \"\\n\\n\")\n    .trim();\n  return (\n    result.replace(\n      /\\uE000PLOT(\\d+)\\uE000/g,\n      (_match: string, index: string) => preserved[Number(index)],\n    ) + \"\\n\"\n  );\n}\n","import { cleanPlotMarkdown } from \"./cleanPlotMarkdown.ts\";\nimport { posix } from \"node:path\";\n\n// The Plot source uses ATX headings, explicit VitePress IDs, and Markdown fences.\n// Keep code verbatim; rewrite only prose links and anchors while joining pages.\nexport function combinePlotDocs(version: string, documents: Map<string, string>): string {\n  const pages = [...documents.keys()].sort();\n  const source = `https://github.com/observablehq/plot/tree/v${version}/docs`;\n  const anchors = new Map<string, Map<string, string>>();\n  const sections = new Map<string, { line: number; title: string; id: string }[]>();\n  const pageId = (page: string) => `plot-${page.replace(/\\.md$/, \"\").replaceAll(\"/\", \"--\")}`;\n\n  for (const page of pages) {\n    const ids = new Map<string, string>();\n    const headings: { line: number; title: string; id: string }[] = [];\n    const counts = new Map<string, number>();\n    proseLines(documents.get(page) ?? \"\", (line, number) => {\n      for (const match of line.matchAll(/\\bid=[\"']([^\"']+)[\"']/g)) {\n        ids.set(match[1], `${pageId(page)}--${match[1]}`);\n      }\n      const heading = line.match(/^ {0,3}#{1,6}\\s+(.+?)\\s*#*\\s*$/);\n      if (!heading) return line;\n      const explicit = heading[1].match(/\\{#([^}]+)\\}/)?.[1];\n      const title = heading[1].replace(/\\s*\\{#[^}]+\\}/g, \"\");\n      const slug =\n        explicit ??\n        title\n          .replace(/<[^>]*>/g, \"\")\n          .toLowerCase()\n          .replace(/[^\\p{L}\\p{N}_\\s-]/gu, \"\")\n          .trim()\n          .replace(/\\s+/g, \"-\");\n      const count = counts.get(slug) ?? 0;\n      counts.set(slug, count + 1);\n      const localId = `${slug}${count ? `-${count}` : \"\"}`;\n      const id = `${pageId(page)}--${localId}`;\n      ids.set(localId, id);\n      headings.push({ line: number, title, id });\n      return line;\n    });\n    anchors.set(page, ids);\n    sections.set(page, headings);\n  }\n\n  function link(target: string, page: string): string {\n    if (/^(?:[a-z][a-z\\d+.-]*:|\\/\\/)/i.test(target)) return target;\n    const [pathAndQuery, fragment] = target.split(\"#\", 2);\n    const path = pathAndQuery.split(\"?\", 1)[0];\n    const resolved =\n      path === \"\"\n        ? page\n        : posix.normalize(\n            path.startsWith(\"/\") ? path.slice(1) : posix.join(posix.dirname(page), path),\n          );\n    const markdown = [resolved, `${resolved}.md`, `${resolved}/index.md`].find((candidate) =>\n      documents.has(candidate),\n    );\n    if (markdown) {\n      const id = fragment\n        ? anchors.get(markdown)?.get(decodeURIComponent(fragment))\n        : pageId(markdown);\n      if (id) return `#${id}`;\n      // Preserve an upstream target when a fragment is not a known heading/ID.\n      return `${source}/${markdown}${fragment ? `#${fragment}` : \"\"}`;\n    }\n    if (resolved.endsWith(\".md\")) {\n      return `${source}/${resolved}${fragment ? `#${fragment}` : \"\"}`;\n    }\n    const base =\n      \"https://raw.githubusercontent.com/observablehq/plot/\" + `refs/tags/v${version}/docs/`;\n    return path.startsWith(\"/\")\n      ? new URL(`public${target}`, base).href\n      : new URL(target, `${base}${page}`).href;\n  }\n\n  const contents = pages\n    .flatMap((page) => [\n      `- [${page}](#${pageId(page)})`,\n      ...(sections.get(page) ?? []).map(\n        ({ title, id }) => `  - [${title.replace(/[[\\]]/g, \"\")}](#${id})`,\n      ),\n    ])\n    .join(\"\\n\");\n  const combined = pages\n    .map((page) => {\n      const headings = new Map(\n        (sections.get(page) ?? []).map((heading) => [heading.line, heading]),\n      );\n      const body = proseLines(documents.get(page) ?? \"\", (line, number) => {\n        const heading = headings.get(number);\n        // Inline code also remains verbatim. Plot's prose links have simple destinations.\n        line = line\n          .split(/(`+[^`]*`+)/g)\n          .map((part, index) => {\n            if (index % 2) return part;\n            return part\n              .replace(\n                /(\\]\\()([^\\s)]+)([^)]*\\))/g,\n                (_match: string, before: string, target: string, after: string) =>\n                  `${before}${link(target, page)}${after}`,\n              )\n              .replace(\n                /^( {0,3}\\[[^\\]]+\\]:\\s*)(\\S+)/,\n                (_match: string, before: string, target: string) =>\n                  `${before}${link(target, page)}`,\n              )\n              .replace(\n                /(?<!:)\\b(href|src)=([\"'])([^\"']+)\\2/g,\n                (_match: string, attr: string, quote: string, target: string) =>\n                  `${attr}=${quote}${link(target, page)}${quote}`,\n              )\n              .replace(\n                /\\bid=([\"'])([^\"']+)\\1/g,\n                (_match: string, quote: string, id: string) =>\n                  `id=${quote}${anchors.get(page)?.get(id) ?? id}${quote}`,\n              );\n          })\n          .join(\"\");\n        return heading\n          ? `<a id=\"${heading.id}\"></a>\\n\\n${line.replace(/\\s*\\{#[^}]+\\}/g, \"\")}`\n          : line;\n      });\n      return `<a id=\"${pageId(page)}\"></a>\\n\\n# ${page}\\n\\nSource: ${source}/${page}\\n\\n${body}`;\n    })\n    .join(\"\\n\\n---\\n\\n\");\n  return cleanPlotMarkdown(\n    `# Observable Plot ${version}\\n\\nPackage: \\`@observablehq/plot@${version}\\`. Source: [v${version}](${source}).\\n\\nThis reference combines selected upstream documentation for static charts and maps. Introductory and site pages, interaction helpers, and the Auto and Tip marks are omitted. Website controls are omitted; upstream setup and interactive templates are labeled as reference code. Use the table of contents to find API signatures and examples; links to omitted pages lead to the tagged upstream documentation.\\n\\n## Table of contents\\n\\n${contents}\\n\\n---\\n\\n${combined}\\n\\n<!-- setup-data-project:observable-plot:${version}:complete -->\\n`,\n  );\n}\n\nexport function proseLines(\n  content: string,\n  transform: (line: string, number: number) => string,\n): string {\n  let fence: { character: string; length: number } | undefined;\n  let script = false;\n  return content\n    .split(\"\\n\")\n    .map((line, number) => {\n      const marker = line.match(/^ {0,3}(`{3,}|~{3,})/);\n      if (fence) {\n        if (\n          marker?.[1][0] === fence.character &&\n          marker[1].length >= fence.length &&\n          /^ {0,3}(?:`+|~+)\\s*$/.test(line)\n        )\n          fence = undefined;\n        return line;\n      }\n      if (marker) {\n        fence = { character: marker[1][0], length: marker[1].length };\n        return line;\n      }\n      if (/^\\s*<script\\b/.test(line)) script = true;\n      if (script) {\n        if (/<\\/script>/.test(line)) script = false;\n        return line;\n      }\n      return transform(line, number);\n    })\n    .join(\"\\n\");\n}\n","// Static chart creation references. Keep this explicit so new upstream pages do\n// not silently expand the installed agent reference.\nexport const PLOT_DOC_PAGES: string[] = [\n  \"features/plots.md\",\n  \"features/marks.md\",\n  \"features/scales.md\",\n  \"features/projections.md\",\n  \"features/legends.md\",\n  \"features/facets.md\",\n  \"features/formats.md\",\n  \"features/curves.md\",\n  \"transforms/bin.md\",\n  \"transforms/group.md\",\n  \"transforms/stack.md\",\n  \"transforms/normalize.md\",\n  \"transforms/centroid.md\",\n  \"transforms/sort.md\",\n  \"marks/area.md\",\n  \"marks/arrow.md\",\n  \"marks/axis.md\",\n  \"marks/bar.md\",\n  \"marks/bollinger.md\",\n  \"marks/box.md\",\n  \"marks/cell.md\",\n  \"marks/contour.md\",\n  \"marks/delaunay.md\",\n  \"marks/density.md\",\n  \"marks/difference.md\",\n  \"marks/dot.md\",\n  \"marks/frame.md\",\n  \"marks/geo.md\",\n  \"marks/grid.md\",\n  \"marks/hexgrid.md\",\n  \"marks/image.md\",\n  \"marks/line.md\",\n  \"marks/linear-regression.md\",\n  \"marks/link.md\",\n  \"marks/raster.md\",\n  \"marks/rect.md\",\n  \"marks/rule.md\",\n  \"marks/text.md\",\n  \"marks/tick.md\",\n  \"marks/tree.md\",\n  \"marks/vector.md\",\n  \"marks/waffle.md\",\n].sort();\n","import { cleanPlotMarkdown } from \"./cleanPlotMarkdown.ts\";\nimport { posix } from \"node:path\";\nimport { proseLines } from \"./combinePlotDocs.ts\";\nimport { PLOT_DOC_PAGES } from \"./plotDocPages.ts\";\n\n// Split the cached format without changing code examples or heading anchors.\nexport function splitPlotDocs(reference: string, version: string): Map<string, string> {\n  const sections = [\n    ...reference.matchAll(\n      /<a id=\"(plot-[^\"]+)\"><\\/a>\\n\\n# ([^\\n]+\\.md)\\n\\nSource:\\s+([^\\s]+)\\n\\n/g,\n    ),\n  ];\n  const files = new Map<string, string>();\n  const anchors = new Map<string, string>();\n  const source = `https://github.com/observablehq/plot/tree/v${version}/docs`;\n  const completion = `<!-- setup-data-project:observable-plot:${version}:complete -->`;\n  if (!reference.trimEnd().endsWith(completion)) throw new Error(\"Incomplete Plot reference.\");\n  const end = reference.lastIndexOf(completion);\n  const licenseStart = reference.lastIndexOf(\"\\n## Upstream license\\n\", end);\n  for (let index = 0; index < sections.length; index++) {\n    const section = sections[index];\n    const page = section[2];\n    if (!PLOT_DOC_PAGES.includes(page) || files.has(page) || section[3] !== `${source}/${page}`)\n      throw new Error(`Invalid Plot page: ${page}`);\n    const body = reference\n      .slice(section.index, sections[index + 1]?.index ?? (licenseStart >= 0 ? licenseStart : end))\n      .trimEnd()\n      .replace(/\\n\\n---$/, \"\");\n    files.set(page, body);\n    proseLines(body, (line) => {\n      for (const match of line.matchAll(/\\bid=[\"']([^\"']+)[\"']/g)) anchors.set(match[1], page);\n      return line;\n    });\n  }\n  if (files.size !== PLOT_DOC_PAGES.length) throw new Error(\"Incomplete Plot pages.\");\n\n  for (const [page, body] of files) {\n    const link = (id: string) => {\n      const destination = anchors.get(id);\n      return destination && destination !== page\n        ? `${posix.relative(posix.dirname(page), destination)}#${id}`\n        : `#${id}`;\n    };\n    files.set(\n      page,\n      cleanPlotMarkdown(\n        proseLines(body, (line) =>\n          line\n            .split(/(`+[^`]*`+)/g)\n            .map((part, index) =>\n              index % 2\n                ? part\n                : part\n                    .replace(\n                      /(\\]\\()#([^\\s)]+)([^)]*\\))/g,\n                      (_match: string, before: string, id: string, after: string) =>\n                        `${before}${link(id)}${after}`,\n                    )\n                    .replace(\n                      /^( {0,3}\\[[^\\]]+\\]:\\s*)#(\\S+)/,\n                      (_match: string, before: string, id: string) => `${before}${link(id)}`,\n                    )\n                    .replace(\n                      /(?<!:)\\b(href|src)=([\"'])#([^\"']+)\\2/g,\n                      (_match: string, attr: string, quote: string, id: string) =>\n                        `${attr}=${quote}${link(id)}${quote}`,\n                    ),\n            )\n            .join(\"\"),\n        ),\n      ),\n    );\n  }\n  const license =\n    licenseStart >= 0\n      ? reference.slice(licenseStart + \"\\n## Upstream license\\n\".length, end).trim()\n      : undefined;\n  if (license) files.set(\"LICENSE\", license + \"\\n\");\n  const index =\n    `# Observable Plot ${version}\\n\\n> Selected documentation for static charts and maps. Start here, then read the relevant pages.\\n\\n[Versioned upstream documentation](${source})${license ? \" · [License](./LICENSE)\" : \"\"}\\n\\n` +\n    [\"features\", \"marks\", \"transforms\"]\n      .map(\n        (group) =>\n          `## ${group[0].toUpperCase() + group.slice(1)}\\n\\n` +\n          PLOT_DOC_PAGES.filter((page) => page.startsWith(`${group}/`))\n            .map((page) => `- [${page}](./${page})`)\n            .join(\"\\n\"),\n      )\n      .join(\"\\n\\n\") +\n    \"\\n\";\n  files.set(\"llms.txt\", index);\n  return files;\n}\n","import { log } from \"@clack/prompts\";\nimport { existsSync, mkdirSync, mkdtempSync, renameSync, rmSync, writeFileSync } from \"node:fs\";\nimport { dirname, join } from \"node:path\";\nimport { splitPlotDocs } from \"./splitPlotDocs.ts\";\nimport { combinePlotDocs } from \"./combinePlotDocs.ts\";\nimport { PLOT_DOC_PAGES } from \"./plotDocPages.ts\";\nimport type { PackageDocs } from \"./fetchPackageDocs.ts\";\n\n// Replace local documentation only after every page is ready.\nexport async function fetchPlotDocs(\n  version: string,\n  options: { preferStored?: boolean } = {},\n): Promise<PackageDocs> {\n  const tag = `v${version}`;\n  const directory = join(\"docs\", \"observable-plot\");\n  try {\n    let llm: string | undefined;\n    if (options.preferStored !== false) {\n      try {\n        const response = await fetch(\n          \"https://raw.githubusercontent.com/nshiab/setup-data-project/\" +\n            `refs/heads/main/docs-cache/observable-plot/${version}/llm.md`,\n        );\n        if (response.ok) {\n          const cached = await response.text();\n          if (isStoredReference(cached, version)) llm = cached;\n        }\n      } catch {\n        // A cache is an optimization. An unavailable cache never blocks the tag.\n      }\n    }\n    if (llm === undefined) llm = await generatePlotReference(version);\n    const files = splitPlotDocs(llm, version);\n    mkdirSync(\"docs\", { recursive: true });\n    const staging = mkdtempSync(join(\"docs\", \".plot-\"));\n    const contents = join(staging, \"contents\");\n    const backup = join(staging, \"previous\");\n    try {\n      for (const [page, content] of files) {\n        const path = join(contents, page);\n        mkdirSync(dirname(path), { recursive: true });\n        writeFileSync(path, content);\n      }\n      if (existsSync(directory)) renameSync(directory, backup);\n      try {\n        renameSync(contents, directory);\n      } catch (error) {\n        if (existsSync(backup)) renameSync(backup, directory);\n        throw error;\n      }\n    } finally {\n      rmSync(staging, { recursive: true, force: true });\n    }\n    return { llm, index: files.get(\"llms.txt\"), plot: { version, pages: [...PLOT_DOC_PAGES] } };\n  } catch (error) {\n    log.warn(\n      `Could not fetch complete Observable Plot documentation for ${tag}. ` +\n        \"Existing files were preserved, but may not match the installed \" +\n        \"version. Resolve the refresh failure before using this reference. \" +\n        String(error),\n    );\n    return {};\n  }\n}\n\nexport async function generatePlotReference(version: string): Promise<string> {\n  if (!/^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?$/.test(version))\n    throw new Error(\"An exact Plot version is required.\");\n  const tag = `v${version}`;\n  const pages = PLOT_DOC_PAGES;\n  const documents = new Map<string, string>();\n  const failed: string[] = [];\n  // Fetch in small batches to avoid overwhelming GitHub on the first run.\n  for (let offset = 0; offset < pages.length; offset += 8) {\n    await Promise.all(\n      pages.slice(offset, offset + 8).map(async (page) => {\n        try {\n          const url =\n            \"https://raw.githubusercontent.com/observablehq/plot/\" +\n            `refs/tags/${tag}/docs/${page}`;\n          const response = await fetch(url);\n          if (!response.ok) throw new Error(`HTTP ${response.status}`);\n          const content = await response.text();\n          documents.set(page, content);\n        } catch {\n          failed.push(page);\n        }\n      }),\n    );\n  }\n\n  if (failed.length > 0) {\n    throw new Error(`Could not fetch ${failed.length} Markdown pages`);\n  }\n  const response = await fetch(\n    `https://raw.githubusercontent.com/observablehq/plot/refs/tags/${tag}/LICENSE`,\n  );\n  if (!response.ok) throw new Error(`Could not fetch Plot's license: HTTP ${response.status}`);\n  const license = await response.text();\n  const completion = `<!-- setup-data-project:observable-plot:${version}:complete -->`;\n  return combinePlotDocs(version, documents).replace(\n    completion,\n    `## Upstream license\\n\\n${license.trim()}\\n\\n${completion}`,\n  );\n}\n\nfunction isStoredReference(content: string, version: string): boolean {\n  const source = `https://github.com/observablehq/plot/tree/v${version}/docs`;\n  const metadata = content.split(/\\n\\s*\\n/)[1]?.replace(/\\s+/g, \" \");\n  if (\n    !content.startsWith(`# Observable Plot ${version}\\n\\n`) ||\n    metadata !== `Package: \\`@observablehq/plot@${version}\\`. Source: [v${version}](${source}).` ||\n    !content.trimEnd().endsWith(`<!-- setup-data-project:observable-plot:${version}:complete -->`)\n  )\n    return false;\n\n  // Match actual page sections, not TOC entries. Require every selected page\n  // exactly once and some upstream heading/content after its source record.\n  const sections = [\n    ...content.matchAll(/<a id=\"(plot-[^\"]+)\"><\\/a>\\n\\n# ([^\\n]+\\.md)\\n\\nSource:\\s+([^\\s]+)\\n\\n/g),\n  ];\n  if (sections.length !== PLOT_DOC_PAGES.length) return false;\n  const found = new Set<string>();\n  for (let index = 0; index < sections.length; index++) {\n    const section = sections[index];\n    const page = section[2];\n    const id = `plot-${page.replace(/\\.md$/, \"\").replaceAll(\"/\", \"--\")}`;\n    if (\n      !PLOT_DOC_PAGES.includes(page) ||\n      found.has(page) ||\n      section[1] !== id ||\n      section[3] !== `${source}/${page}`\n    )\n      return false;\n    const body = content.slice(section.index + section[0].length, sections[index + 1]?.index);\n    if (!/^#{1,6}\\s+\\S/m.test(body)) return false;\n    found.add(page);\n  }\n  return true;\n}\n","import { log } from \"@clack/prompts\";\nimport { fetchPackageDocs, type PackageDocs } from \"./fetchPackageDocs.ts\";\nimport { fetchPlotDocs } from \"./fetchPlotDocs.ts\";\nimport { getInstalledPackageConfigs } from \"./packageRegistry.ts\";\nexport async function syncPackageDocs(\n  installedPackages: string[],\n  installedVersions: Record<string, string>,\n): Promise<Record<string, PackageDocs>> {\n  const mapping: Record<string, PackageDocs> = {};\n  for (const pkg of getInstalledPackageConfigs(installedPackages)) {\n    const version = installedVersions[pkg.value];\n    if (!version) {\n      log.warn(\n        `Could not determine the installed version of ${pkg.value}. Install the project dependencies, then run the docs script again. Existing documentation may be stale.`,\n      );\n      continue;\n    }\n    const docs =\n      pkg.value === \"@observablehq/plot\"\n        ? await fetchPlotDocs(version)\n        : await fetchPackageDocs(pkg.value, version);\n    if (docs.index !== undefined || docs.plot) mapping[pkg.value] = docs;\n  }\n  return mapping;\n}\n","import { existsSync, readFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { isObject } from \"./jsonObject.ts\";\nexport function getInstalledPackageVersions(\n  packageSpecifiers: Record<string, string>,\n): Record<string, string> {\n  const versions: Record<string, string> = {};\n  for (const pkg of Object.keys(packageSpecifiers)) {\n    const path = join(\"node_modules\", pkg, \"package.json\");\n    if (!existsSync(path)) continue;\n    const config: unknown = JSON.parse(readFileSync(path, \"utf8\"));\n    if (\n      isObject(config) &&\n      typeof config.version === \"string\" &&\n      /^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/.test(config.version)\n    )\n      versions[pkg] = config.version;\n  }\n  return versions;\n}\n","import { SUPPORTED_PACKAGES } from \"./packageRegistry.ts\";\n\nexport interface CliOptions {\n  help: boolean;\n  docs: boolean;\n  packages: string[];\n}\n\nconst packageFlags = new Map(\n  SUPPORTED_PACKAGES.map((pkg) => [\n    `--${pkg.label.replace(/^simple-data-analysis/, \"sda\").replace(/^journalism-/, \"\")}`,\n    pkg.value,\n  ]),\n);\n\nexport const CLI_HELP = `Usage: setup-data-project [library flags | --docs] [--help]\n\n${Array.from(packageFlags, ([flag, pkg]) => `  ${flag.padEnd(16)} Select ${pkg}.`).join(\"\\n\")}\n  --docs            Refresh documentation only for installed libraries.\n  -h, --help        Show this help and exit.\n\nWithout a package flag, choose packages interactively.\nCombine package flags to select libraries without prompting.\nPackage flags keep existing versions and still set up project files and docs.`;\n\nexport function parseArguments(args: string[]): CliOptions {\n  const options: CliOptions = { help: false, docs: false, packages: [] };\n\n  for (const arg of args) {\n    const pkg = packageFlags.get(arg);\n    if (arg === \"--help\" || arg === \"-h\") {\n      options.help = true;\n    } else if (arg === \"--docs\") {\n      options.docs = true;\n    } else if (pkg) {\n      if (!options.packages.includes(pkg)) options.packages.push(pkg);\n    } else {\n      throw new Error(`Unknown argument: ${arg}. Use --help for usage.`);\n    }\n  }\n\n  if (options.docs && options.packages.length > 0)\n    throw new Error(\"--docs cannot be combined with package flags.\");\n  return options;\n}\n","#!/usr/bin/env node\nimport { cancel, intro, isCancel, multiselect, outro, select, spinner } from \"@clack/prompts\";\nimport process from \"node:process\";\nimport { execFileSync } from \"node:child_process\";\n\nimport { getRuntime } from \"./helpers/getRuntime.ts\";\nimport { PACKAGE_OPTIONS } from \"./helpers/packageOptions.ts\";\nimport { ensureGitignore } from \"./helpers/ensureGitignore.ts\";\nimport { ensureReadme } from \"./helpers/ensureReadme.ts\";\nimport { ensureTooling } from \"./helpers/ensureTooling.ts\";\nimport { ensureVscode } from \"./helpers/ensureVscode.ts\";\nimport { runPackageManager, installPackages } from \"./helpers/installPackages.ts\";\nimport { getProjectTasks } from \"./helpers/getProjectTasks.ts\";\nimport { createFolderStructure } from \"./helpers/createFolderStructure.ts\";\nimport { ensureEnvFile } from \"./helpers/ensureEnvFile.ts\";\nimport { ensureAgents } from \"./helpers/ensureAgents.ts\";\nimport { getInstalledPackageConfigs } from \"./helpers/packageRegistry.ts\";\nimport { ProjectManifest } from \"./helpers/projectManifest.ts\";\nimport { syncPackageDocs } from \"./helpers/syncPackageDocs.ts\";\nimport { getInstalledPackageVersions } from \"./helpers/getInstalledPackageVersions.ts\";\nimport { CLI_HELP, parseArguments } from \"./helpers/parseArguments.ts\";\n\nasync function main() {\n  const cliOptions = parseArguments(process.argv.slice(2));\n  if (cliOptions.help) {\n    console.log(CLI_HELP);\n    return;\n  }\n\n  const runtime = getRuntime();\n  const projectManifest = ProjectManifest.open();\n  if (cliOptions.docs) {\n    await refreshDocs(projectManifest);\n    return;\n  }\n  console.log();\n  intro(`Hi! 👋 (Running on ${runtime})`);\n\n  const installedPackages = projectManifest.getInstalledPackages();\n  const options = PACKAGE_OPTIONS.map((opt) => ({\n    ...opt,\n    label: installedPackages.includes(opt.value)\n      ? `${opt.label} \\x1b[2m(installed)\\x1b[22m`\n      : opt.label,\n  }));\n\n  const selectedPackages =\n    cliOptions.packages.length > 0\n      ? cliOptions.packages\n      : await multiselect({\n          message:\n            \"Which libraries would you like to install?\\n\\x1b[2m(space to select, arrows to navigate, enter to confirm)\\x1b[22m\\n\",\n          options,\n          required: false,\n        });\n\n  if (isCancel(selectedPackages)) {\n    cancel(\"Installation cancelled.\");\n    process.exit(0);\n  }\n\n  const alreadyInstalled = selectedPackages.filter((pkg) => installedPackages.includes(pkg));\n\n  const packagesToInstall: string[] = [];\n\n  for (const pkg of selectedPackages) {\n    if (alreadyInstalled.includes(pkg)) {\n      if (cliOptions.packages.length > 0) continue;\n\n      const action = await select({\n        message: `${pkg} is already installed. What would you like to do?`,\n        options: [\n          { value: \"skip\", label: \"Keep existing version\" },\n          { value: \"update\", label: \"Update to latest\" },\n        ],\n      });\n\n      if (isCancel(action)) {\n        cancel(\"Installation cancelled.\");\n        process.exit(0);\n      }\n\n      if (action === \"update\") {\n        packagesToInstall.push(pkg);\n      }\n    } else {\n      packagesToInstall.push(pkg);\n    }\n  }\n\n  projectManifest.updateTasks(getProjectTasks(runtime));\n\n  const sInstall = spinner();\n  sInstall.start(\"Installing packages...\");\n\n  try {\n    await installPackages(packagesToInstall);\n    projectManifest.reload();\n    const declared = projectManifest.getInstalledPackageSpecifiers();\n    if (\n      projectManifest\n        .getInstalledPackages()\n        .some((pkg) =>\n          [\"@nshiab/simple-data-analysis\", \"@nshiab/journalism-dataviz\"].includes(pkg),\n        ) &&\n      !declared[\"@observablehq/plot\"]\n    ) {\n      await installPackages([\"@observablehq/plot\"]);\n      projectManifest.reload();\n    }\n    await ensureTooling(projectManifest);\n    // Reinstall declared dependencies when a project was cloned without node_modules.\n    projectManifest.reload();\n    const versions = getInstalledPackageVersions(projectManifest.getInstalledPackageSpecifiers());\n    if (projectManifest.getInstalledPackages().some((pkg) => !versions[pkg]))\n      await runPackageManager([\"install\"]);\n  } catch (error) {\n    sInstall.stop(\"Package installation failed.\");\n    throw error;\n  }\n  sInstall.stop(\"Packages installed.\");\n\n  projectManifest.reload();\n  const finalInstalledPackages = getInstalledPackageConfigs(\n    projectManifest.getInstalledPackages(),\n  ).map((pkg) => pkg.value);\n  const docsMapping = await refreshDocs(projectManifest);\n\n  const sConfig = spinner();\n  sConfig.start(\"Preparing project files and configuration...\");\n  try {\n    projectManifest.updateTasks(getProjectTasks());\n    execFileSync(process.execPath, [\"node_modules/vite-plus/bin/vp\", \"fmt\", \"package.json\"], {\n      stdio: \"pipe\",\n    });\n\n    createFolderStructure(finalInstalledPackages);\n    ensureGitignore();\n    ensureEnvFile();\n    ensureVscode();\n    ensureReadme(runtime, finalInstalledPackages);\n    ensureAgents(docsMapping, runtime, finalInstalledPackages);\n  } catch (error) {\n    sConfig.stop(\"Project configuration failed.\");\n    throw error;\n  }\n  sConfig.stop(\"Project files and configuration ready.\");\n\n  outro(\n    process.exitCode\n      ? \"Project setup complete; documentation needs attention.\"\n      : \"You are all set! 🙌\",\n  );\n}\n\nasync function refreshDocs(manifest: ProjectManifest) {\n  const packages = getInstalledPackageConfigs(manifest.getInstalledPackages()).map(\n    (pkg) => pkg.value,\n  );\n  const sDocs = spinner();\n  sDocs.start(\"Downloading documentation...\");\n  try {\n    const mapping = await syncPackageDocs(\n      packages,\n      getInstalledPackageVersions(manifest.getInstalledPackageSpecifiers()),\n    );\n    if (Object.keys(mapping).length !== packages.length) {\n      sDocs.stop(\"Documentation incomplete. 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package/dist/sda.mjs

@@ -0,0 +1,329 @@
+#!/usr/bin/env node
+import { t as isObject } from "./jsonObject-B1ldqsgL.mjs";
+import { spawn, spawnSync } from "node:child_process";
+import { existsSync, lstatSync, mkdirSync, readFileSync, readdirSync, renameSync, rmSync, watch, writeFileSync } from "node:fs";
+import { dirname, join, resolve, sep } from "node:path";
+import { setTimeout as setTimeout$1 } from "node:timers/promises";
+import { parseArgs } from "node:util";
+import { randomUUID } from "node:crypto";
+//#region src/helpers/sdaLock.ts
+const SDA_PID_FILE = "sda/.sda.pid";
+const SDA_LOCK_DIRECTORY = "sda/.sda-lock";
+function errorCode$1(error) {
+	return error instanceof Error && "code" in error ? error.code : void 0;
+}
+async function acquireSdaLock(command) {
+	const directory = resolve(SDA_LOCK_DIRECTORY);
+	const pidFile = resolve(SDA_PID_FILE);
+	const id = `${process.pid}-${randomUUID()}`;
+	const ownDirectory = join(directory, id);
+	mkdirSync(directory, { recursive: true });
+	mkdirSync(ownDirectory);
+	let ownsPid = false;
+	const release = () => {
+		if (ownsPid) {
+			rmSync(pidFile, { force: true });
+			ownsPid = false;
+		}
+		rmSync(ownDirectory, {
+			recursive: true,
+			force: true
+		});
+		process.removeListener("exit", release);
+	};
+	process.once("exit", release);
+	function readClaim(candidate) {
+		const match = /^(\d+)-[\da-f-]{36}$/.exec(candidate);
+		if (!match) return;
+		const pid = Number(match[1]);
+		if (!Number.isInteger(pid) || pid <= 0 || pid > 2147483647) return;
+		const path = join(directory, candidate);
+		try {
+			process.kill(pid, 0);
+		} catch (error) {
+			if (errorCode$1(error) !== "ESRCH") throw error;
+			rmSync(path, {
+				recursive: true,
+				force: true
+			});
+			return;
+		}
+		let record;
+		try {
+			record = JSON.parse(readFileSync(join(path, "owner.json"), "utf8"));
+		} catch (error) {
+			if (errorCode$1(error) !== "ENOENT") throw error;
+			return existsSync(path) ? {
+				id: candidate,
+				pid,
+				ticket: 0
+			} : void 0;
+		}
+		if (!isObject(record) || typeof record.ticket !== "number" || !Number.isSafeInteger(record.ticket) || record.ticket < 1 || typeof record.command !== "string") throw new Error(`Cannot read the SDA lock owned by process ${pid}.`);
+		return {
+			id: candidate,
+			pid,
+			ticket: record.ticket,
+			command: record.command
+		};
+	}
+	try {
+		let ticket = 1;
+		for (const candidate of readdirSync(directory)) {
+			const claim = readClaim(candidate);
+			if (claim) ticket = Math.max(ticket, claim.ticket + 1);
+		}
+		writeFileSync(join(ownDirectory, "owner.tmp"), JSON.stringify({
+			ticket,
+			command
+		}));
+		renameSync(join(ownDirectory, "owner.tmp"), join(ownDirectory, "owner.json"));
+		const deadline = performance.now() + 5e3;
+		for (const candidate of readdirSync(directory)) {
+			if (candidate === id) continue;
+			let claim = readClaim(candidate);
+			while (claim?.ticket === 0) {
+				if (performance.now() >= deadline) throw new Error(`Another SDA command is still starting (PID ${claim.pid}). Wait for it to finish starting, then try again.`);
+				await setTimeout$1(10);
+				claim = readClaim(candidate);
+			}
+			if (claim && (claim.ticket < ticket || claim.ticket === ticket && claim.id < id)) throw new Error(`${claim.command} is already running${claim.command?.endsWith("sda:watch") ? " and watching this project's files" : " an analysis for this project"} (PID ${claim.pid}). Wait for it to finish or stop it with Ctrl+C in its terminal, then try again.`);
+		}
+		writeFileSync(pidFile, String(process.pid) + "\n");
+		ownsPid = true;
+		return release;
+	} catch (error) {
+		release();
+		throw error;
+	}
+}
+//#endregion
+//#region src/sda.ts
+const { positionals: [entry, ...paths], values } = parseArgs({
+	allowPositionals: true,
+	options: {
+		watch: {
+			type: "boolean",
+			default: false
+		},
+		ignore: {
+			type: "string",
+			multiple: true,
+			default: []
+		}
+	}
+});
+if (!entry) {
+	console.error("Usage: sda-run [--watch] <entry-file> [watch-paths...] [--ignore path]");
+	process.exit(1);
+}
+const watching = values.watch;
+const selected = [entry, ...paths].map((path) => resolve(path));
+const ignored = [
+	SDA_PID_FILE,
+	SDA_LOCK_DIRECTORY,
+	...values.ignore
+].map((path) => resolve(path));
+const within = (path, root) => path === root || path.startsWith(root + sep);
+const excluded = (path) => ignored.some((root) => within(path, root));
+const bun = Boolean(process.versions.bun);
+const runCommand = (bun ? "bun run " : "npm run ") + (watching ? "sda:watch" : "sda");
+const windows = process.platform === "win32";
+let releaseLock;
+let fixer;
+let analysis;
+let timer;
+let checking = false;
+let closing = false;
+let needsCheck = true;
+let contents = /* @__PURE__ */ new Map();
+const watchers = /* @__PURE__ */ new Map();
+function launch(args, command = process.execPath) {
+	const child = spawn(command, args, {
+		stdio: "inherit",
+		detached: !windows,
+		shell: windows && command === "npm.cmd"
+	});
+	return {
+		child,
+		done: new Promise((resolve) => {
+			child.once("error", (error) => {
+				console.error(errorMessage(error));
+				resolve(1);
+			});
+			child.once("close", resolve);
+		})
+	};
+}
+function snapshot() {
+	const files = /* @__PURE__ */ new Map();
+	function collect(path) {
+		if (excluded(path) || files.has(path)) return;
+		try {
+			const stat = lstatSync(path, { bigint: true });
+			if (stat.isDirectory()) {
+				files.set(path, "directory");
+				for (const name of readdirSync(path)) collect(join(path, name));
+			} else files.set(path, [
+				stat.dev,
+				stat.ino,
+				stat.size,
+				stat.mtimeNs,
+				stat.ctimeNs
+			].join(":"));
+		} catch (error) {
+			if (errorCode(error) !== "ENOENT" && errorCode(error) !== "ENOTDIR") throw error;
+			files.set(path, null);
+		}
+	}
+	for (const path of selected) collect(path);
+	return files;
+}
+function equal(left, right) {
+	return left.size === right.size && [...left].every(([path, value]) => right.get(path) === value);
+}
+function refreshWatchers() {
+	const directories = /* @__PURE__ */ new Map();
+	const add = (directory, recursive) => {
+		directories.set(directory, recursive || directories.get(directory) || false);
+	};
+	for (const path of selected) {
+		if (excluded(path)) continue;
+		if (lstatSync(path, { throwIfNoEntry: false })?.isDirectory()) add(path, true);
+		let parent = dirname(path);
+		while (!existsSync(parent)) parent = dirname(parent);
+		add(parent, parent !== dirname(path));
+	}
+	for (const [directory, state] of watchers) if (directories.get(directory) !== state.recursive) {
+		state.watcher.close();
+		watchers.delete(directory);
+	}
+	for (const [directory, recursive] of directories) {
+		if (watchers.has(directory)) continue;
+		const watcher = watch(directory, { recursive }, (_event, name) => {
+			if (checking || closing) return;
+			const changed = name && resolve(directory, name.toString());
+			if (!changed || !excluded(changed) && selected.some((path) => within(changed, path) || within(path, changed))) schedule();
+		});
+		watcher.on("error", fail);
+		watchers.set(directory, {
+			watcher,
+			recursive
+		});
+	}
+}
+async function stop(job) {
+	if (!job?.child.pid) return;
+	const pid = job.child.pid;
+	if (windows) {
+		if (job.child.exitCode === null && job.child.signalCode === null) spawnSync("taskkill", [
+			"/pid",
+			String(job.child.pid),
+			"/T",
+			"/F"
+		], { stdio: "ignore" });
+		await job.done;
+		return;
+	}
+	const signal = (name) => {
+		try {
+			process.kill(-pid, name);
+			return true;
+		} catch (error) {
+			if (errorCode(error) !== "ESRCH") throw error;
+			return false;
+		}
+	};
+	signal("SIGTERM");
+	const deadline = performance.now() + 1e3;
+	while (signal(0)) {
+		if (performance.now() >= deadline) {
+			signal("SIGKILL");
+			break;
+		}
+		await setTimeout$1(25);
+	}
+	await job.done;
+}
+async function check() {
+	if (closing || checking) return;
+	if (!needsCheck && equal(contents, snapshot())) return;
+	checking = true;
+	needsCheck = false;
+	await stop(analysis);
+	analysis = void 0;
+	if (closing) return;
+	refreshWatchers();
+	contents = snapshot();
+	process.stdout.write("\x1B[2J\x1B[3J\x1B[H");
+	console.log("Fixing and checking...");
+	fixer = launch(["run", "fix"], bun ? process.execPath : windows ? "npm.cmd" : "npm");
+	const fixed = await fixer.done;
+	if (closing) return;
+	const current = snapshot();
+	needsCheck = !equal(contents, current);
+	contents = current;
+	refreshWatchers();
+	fixer = void 0;
+	checking = false;
+	if (needsCheck) schedule();
+	else if (fixed === 0) {
+		console.log("Running analysis...");
+		analysis = launch(bun ? ["run", entry] : ["--env-file=.env", entry]);
+	} else console.log("Fix failed. Watching for changes...");
+}
+function schedule() {
+	clearTimeout(timer);
+	timer = setTimeout(() => check().catch(fail), 0);
+}
+async function shutdown(code) {
+	if (closing) return;
+	closing = true;
+	clearTimeout(timer);
+	for (const { watcher } of watchers.values()) watcher.close();
+	await Promise.all([stop(fixer), stop(analysis)]);
+	releaseLock?.();
+	process.exit(code);
+}
+function errorCode(error) {
+	return error instanceof Error && "code" in error ? error.code : void 0;
+}
+function errorMessage(error) {
+	return error instanceof Error ? error.message : String(error);
+}
+function fail(error) {
+	console.error(errorMessage(error));
+	shutdown(1);
+}
+process.on("SIGINT", () => void shutdown(0));
+process.on("SIGTERM", () => void shutdown(0));
+async function runOnce() {
+	console.log("Fixing and checking...");
+	fixer = launch(["run", "fix"], bun ? process.execPath : windows ? "npm.cmd" : "npm");
+	const fixed = await fixer.done;
+	if (closing) return;
+	if (fixed !== 0) {
+		await shutdown(fixed ?? 1);
+		return;
+	}
+	await stop(fixer);
+	fixer = void 0;
+	if (closing) return;
+	console.log("Running analysis...");
+	analysis = launch(bun ? ["run", entry] : ["--env-file=.env", entry]);
+	await shutdown(await analysis.done ?? 1);
+}
+try {
+	releaseLock = await acquireSdaLock(runCommand);
+	if (closing) releaseLock();
+	else if (watching) {
+		refreshWatchers();
+		check().catch(fail);
+	} else runOnce().catch(fail);
+} catch (error) {
+	fail(/* @__PURE__ */ new Error("Cannot start " + runCommand + ": " + errorMessage(error)));
+}
+//#endregion
+export {};
+
+//# sourceMappingURL=sda.mjs.map

package/dist/sda.mjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"sda.mjs","names":["errorCode","delay","delay"],"sources":["../src/helpers/sdaLock.ts","../src/sda.ts"],"sourcesContent":["import { randomUUID } from \"node:crypto\";\nimport {\n  existsSync,\n  mkdirSync,\n  readFileSync,\n  readdirSync,\n  renameSync,\n  rmSync,\n  writeFileSync,\n} from \"node:fs\";\nimport { join, resolve } from \"node:path\";\nimport { setTimeout as delay } from \"node:timers/promises\";\nimport { isObject } from \"./jsonObject.ts\";\n\nexport const SDA_PID_FILE = \"sda/.sda.pid\";\nexport const SDA_LOCK_DIRECTORY = \"sda/.sda-lock\";\n\ntype Claim = { id: string; pid: number; ticket: number; command?: string };\n\nfunction errorCode(error: unknown) {\n  return error instanceof Error && \"code\" in error ? error.code : undefined;\n}\n\n// Bakery ordering: publish a unique claim before choosing a ticket, then wait for\n// concurrent ticket choices. Never replace/delete a shared lock during recovery.\n// https://www.microsoft.com/en-us/research/publication/new-solution-dijkstras-concurrent-programming-problem/\nexport async function acquireSdaLock(command: string): Promise<() => void> {\n  const directory = resolve(SDA_LOCK_DIRECTORY);\n  const pidFile = resolve(SDA_PID_FILE);\n  const id = `${process.pid}-${randomUUID()}`;\n  const ownDirectory = join(directory, id);\n  mkdirSync(directory, { recursive: true });\n  mkdirSync(ownDirectory);\n  let ownsPid = false;\n  const release = () => {\n    if (ownsPid) {\n      // Remove the informational PID before releasing ownership to the next run.\n      rmSync(pidFile, { force: true });\n      ownsPid = false;\n    }\n    rmSync(ownDirectory, { recursive: true, force: true });\n    process.removeListener(\"exit\", release);\n  };\n  process.once(\"exit\", release);\n\n  function readClaim(candidate: string): Claim | undefined {\n    const match = /^(\\d+)-[\\da-f-]{36}$/.exec(candidate);\n    if (!match) return;\n    const pid = Number(match[1]);\n    if (!Number.isInteger(pid) || pid <= 0 || pid > 2147483647) return;\n    const path = join(directory, candidate);\n    try {\n      process.kill(pid, 0);\n    } catch (error) {\n      if (errorCode(error) !== \"ESRCH\") throw error;\n      // Claim names are never reused, so another starter cannot acquire this path.\n      rmSync(path, { recursive: true, force: true });\n      return;\n    }\n    let record: unknown;\n    try {\n      record = JSON.parse(readFileSync(join(path, \"owner.json\"), \"utf8\"));\n    } catch (error) {\n      if (errorCode(error) !== \"ENOENT\") throw error;\n      // A directory without a published ticket is still choosing, or has exited.\n      return existsSync(path) ? { id: candidate, pid, ticket: 0 } : undefined;\n    }\n    if (\n      !isObject(record) ||\n      typeof record.ticket !== \"number\" ||\n      !Number.isSafeInteger(record.ticket) ||\n      record.ticket < 1 ||\n      typeof record.command !== \"string\"\n    )\n      throw new Error(`Cannot read the SDA lock owned by process ${pid}.`);\n    return { id: candidate, pid, ticket: record.ticket, command: record.command };\n  }\n\n  try {\n    let ticket = 1;\n    for (const candidate of readdirSync(directory)) {\n      const claim = readClaim(candidate);\n      if (claim) ticket = Math.max(ticket, claim.ticket + 1);\n    }\n    writeFileSync(join(ownDirectory, \"owner.tmp\"), JSON.stringify({ ticket, command }));\n    renameSync(join(ownDirectory, \"owner.tmp\"), join(ownDirectory, \"owner.json\"));\n    const deadline = performance.now() + 5000;\n    for (const candidate of readdirSync(directory)) {\n      if (candidate === id) continue;\n      let claim = readClaim(candidate);\n      while (claim?.ticket === 0) {\n        if (performance.now() >= deadline)\n          throw new Error(\n            `Another SDA command is still starting (PID ${claim.pid}). Wait for it to finish starting, then try again.`,\n          );\n        await delay(10);\n        claim = readClaim(candidate);\n      }\n      if (claim && (claim.ticket < ticket || (claim.ticket === ticket && claim.id < id)))\n        throw new Error(\n          `${claim.command} is already running${claim.command?.endsWith(\"sda:watch\") ? \" and watching this project's files\" : \" an analysis for this project\"} (PID ${claim.pid}). Wait for it to finish or stop it with Ctrl+C in its terminal, then try again.`,\n        );\n    }\n    // Only the winner touches the shared PID file, including stale-file recovery.\n    writeFileSync(pidFile, String(process.pid) + \"\\n\");\n    ownsPid = true;\n    return release;\n  } catch (error) {\n    release();\n    throw error;\n  }\n}\n","#!/usr/bin/env node\nimport { existsSync, lstatSync, type FSWatcher, readdirSync, watch } from \"node:fs\";\nimport { spawn, spawnSync, type ChildProcess } from \"node:child_process\";\nimport { dirname, join, resolve, sep } from \"node:path\";\nimport { setTimeout as delay } from \"node:timers/promises\";\nimport { parseArgs } from \"node:util\";\nimport { acquireSdaLock, SDA_PID_FILE, SDA_LOCK_DIRECTORY } from \"./helpers/sdaLock.ts\";\n\nconst {\n  positionals: [entry, ...paths],\n  values,\n} = parseArgs({\n  allowPositionals: true,\n  options: {\n    watch: { type: \"boolean\", default: false },\n    ignore: { type: \"string\", multiple: true, default: [] },\n  },\n});\nif (!entry) {\n  console.error(\"Usage: sda-run [--watch] <entry-file> [watch-paths...] [--ignore path]\");\n  process.exit(1);\n}\nconst watching = values.watch;\nconst selected = [entry, ...paths].map((path) => resolve(path));\nconst ignored = [SDA_PID_FILE, SDA_LOCK_DIRECTORY, ...values.ignore].map((path) => resolve(path));\nconst within = (path: string, root: string) => path === root || path.startsWith(root + sep);\nconst excluded = (path: string) => ignored.some((root) => within(path, root));\nconst bun = Boolean(process.versions.bun);\nconst runCommand = (bun ? \"bun run \" : \"npm run \") + (watching ? \"sda:watch\" : \"sda\");\nconst windows = process.platform === \"win32\";\ntype Job = { child: ChildProcess; done: Promise<number | null> };\nlet releaseLock: (() => void) | undefined;\nlet fixer: Job | undefined;\nlet analysis: Job | undefined;\nlet timer: ReturnType<typeof setTimeout> | undefined;\nlet checking = false;\nlet closing = false;\nlet needsCheck = true;\nlet contents = new Map<string, string | null>();\nconst watchers = new Map<string, { watcher: FSWatcher; recursive: boolean }>();\n\nfunction launch(args: string[], command = process.execPath) {\n  const child = spawn(command, args, {\n    stdio: \"inherit\",\n    detached: !windows,\n    shell: windows && command === \"npm.cmd\",\n  });\n  const done = new Promise<number | null>((resolve) => {\n    child.once(\"error\", (error) => {\n      console.error(errorMessage(error));\n      resolve(1);\n    });\n    child.once(\"close\", resolve);\n  });\n  return { child, done };\n}\n\nfunction snapshot() {\n  const files = new Map<string, string | null>();\n  function collect(path: string) {\n    if (excluded(path) || files.has(path)) return;\n    try {\n      const stat = lstatSync(path, { bigint: true });\n      if (stat.isDirectory()) {\n        files.set(path, \"directory\");\n        for (const name of readdirSync(path)) collect(join(path, name));\n      } else {\n        // Compare metadata without reading potentially large datasets or following symlinks.\n        files.set(path, [stat.dev, stat.ino, stat.size, stat.mtimeNs, stat.ctimeNs].join(\":\"));\n      }\n    } catch (error) {\n      if (errorCode(error) !== \"ENOENT\" && errorCode(error) !== \"ENOTDIR\") throw error;\n      files.set(path, null);\n    }\n  }\n  for (const path of selected) collect(path);\n  return files;\n}\n\nfunction equal(left: Map<string, string | null>, right: Map<string, string | null>) {\n  return left.size === right.size && [...left].every(([path, value]) => right.get(path) === value);\n}\n\nfunction refreshWatchers() {\n  const directories = new Map<string, boolean>();\n  const add = (directory: string, recursive: boolean) => {\n    directories.set(directory, recursive || directories.get(directory) || false);\n  };\n  for (const path of selected) {\n    if (excluded(path)) continue;\n    if (lstatSync(path, { throwIfNoEntry: false })?.isDirectory()) add(path, true);\n    // Watch the parent too, so deleted files and folders can be restored.\n    let parent = dirname(path);\n    while (!existsSync(parent)) parent = dirname(parent);\n    add(parent, parent !== dirname(path));\n  }\n  for (const [directory, state] of watchers) {\n    if (directories.get(directory) !== state.recursive) {\n      state.watcher.close();\n      watchers.delete(directory);\n    }\n  }\n  for (const [directory, recursive] of directories) {\n    if (watchers.has(directory)) continue;\n    const watcher = watch(directory, { recursive }, (_event, name) => {\n      if (checking || closing) return;\n      const changed = name && resolve(directory, name.toString());\n      if (\n        !changed ||\n        (!excluded(changed) &&\n          selected.some((path) => within(changed, path) || within(path, changed)))\n      )\n        schedule();\n    });\n    watcher.on(\"error\", fail);\n    watchers.set(directory, { watcher, recursive });\n  }\n}\n\nasync function stop(job: Job | undefined) {\n  if (!job?.child.pid) return;\n  const pid = job.child.pid;\n  if (windows) {\n    if (job.child.exitCode === null && job.child.signalCode === null) {\n      spawnSync(\"taskkill\", [\"/pid\", String(job.child.pid), \"/T\", \"/F\"], { stdio: \"ignore\" });\n    }\n    await job.done;\n    return;\n  }\n  const signal = (name: NodeJS.Signals | 0) => {\n    try {\n      process.kill(-pid, name);\n      return true;\n    } catch (error) {\n      if (errorCode(error) !== \"ESRCH\") throw error;\n      return false;\n    }\n  };\n  signal(\"SIGTERM\");\n  // The direct child can exit first; retain the grace period for its entire process group.\n  const deadline = performance.now() + 1000;\n  while (signal(0)) {\n    if (performance.now() >= deadline) {\n      signal(\"SIGKILL\");\n      break;\n    }\n    await delay(25);\n  }\n  await job.done;\n}\n\nasync function check() {\n  if (closing || checking) return;\n  if (!needsCheck && equal(contents, snapshot())) return;\n  checking = true;\n  needsCheck = false;\n  await stop(analysis);\n  analysis = undefined;\n  if (closing) return;\n  refreshWatchers();\n  contents = snapshot();\n  process.stdout.write(\"\\u001b[2J\\u001b[3J\\u001b[H\");\n  console.log(\"Fixing and checking...\");\n  fixer = launch([\"run\", \"fix\"], bun ? process.execPath : windows ? \"npm.cmd\" : \"npm\");\n  const fixed = await fixer.done;\n  if (closing) return;\n  const current = snapshot();\n  // Recheck edits made during fixes; ignore delayed events for unchanged file states.\n  needsCheck = !equal(contents, current);\n  contents = current;\n  refreshWatchers();\n  fixer = undefined;\n  checking = false;\n  if (needsCheck) {\n    schedule();\n  } else if (fixed === 0) {\n    console.log(\"Running analysis...\");\n    analysis = launch(bun ? [\"run\", entry] : [\"--env-file=.env\", entry]);\n  } else {\n    console.log(\"Fix failed. Watching for changes...\");\n  }\n}\n\nfunction schedule() {\n  clearTimeout(timer);\n  timer = setTimeout(() => check().catch(fail), 0);\n}\n\nasync function shutdown(code: number) {\n  if (closing) return;\n  closing = true;\n  clearTimeout(timer);\n  for (const { watcher } of watchers.values()) watcher.close();\n  await Promise.all([stop(fixer), stop(analysis)]);\n  releaseLock?.();\n  process.exit(code);\n}\n\nfunction errorCode(error: unknown) {\n  return error instanceof Error && \"code\" in error ? error.code : undefined;\n}\n\nfunction errorMessage(error: unknown) {\n  return error instanceof Error ? error.message : String(error);\n}\n\nfunction fail(error: unknown) {\n  console.error(errorMessage(error));\n  void shutdown(1);\n}\n\nprocess.on(\"SIGINT\", () => void shutdown(0));\nprocess.on(\"SIGTERM\", () => void shutdown(0));\n\nasync function runOnce() {\n  console.log(\"Fixing and checking...\");\n  fixer = launch([\"run\", \"fix\"], bun ? process.execPath : windows ? \"npm.cmd\" : \"npm\");\n  const fixed = await fixer.done;\n  if (closing) return;\n  if (fixed !== 0) {\n    await shutdown(fixed ?? 1);\n    return;\n  }\n  await stop(fixer);\n  fixer = undefined;\n  if (closing) return;\n  console.log(\"Running analysis...\");\n  analysis = launch(bun ? [\"run\", entry] : [\"--env-file=.env\", entry]);\n  const result = await analysis.done;\n  await shutdown(result ?? 1);\n}\n\ntry {\n  releaseLock = await acquireSdaLock(runCommand);\n  if (closing) releaseLock();\n  else if (watching) {\n    refreshWatchers();\n    void check().catch(fail);\n  } else {\n    void runOnce().catch(fail);\n  }\n} catch (error) {\n  fail(new Error(\"Cannot start \" + runCommand + \": \" + 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package/package.json

@@ -1,10 +1,11 @@
 {
   "name": "@nshiab/setup-data-project",
-  "version": "3.0.5",
+  "version": "4.0.0",
   "description": "Quickly kick off a project using simple-data-analysis-core, simple-data-analysis, and journalism libraries.",
   "license": "MIT",
   "repository": "https://github.com/nshiab/setup-data-project",
   "bin": {
+    "sda-run": "./dist/sda.mjs",
     "setup-data-project": "./dist/main.mjs"
   },
   "files": [
@@ -32,7 +33,6 @@
   },
   "devDependencies": {
     "@types/node": "24.19.2",
-    "typescript": "6.0.3",
     "vite-plus": "1.2.0"
   },
   "engines": {