@npmcli/arborist 2.6.3 → 2.8.0

package/lib/place-dep.js

@@ -0,0 +1,536 @@
+// Given a dep, a node that depends on it, and the edge representing that
+// dependency, place the dep somewhere in the node's tree, and all of its
+// peer dependencies.
+//
+// Handles all of the tree updating needed to place the dep, including
+// removing replaced nodes, pruning now-extraneous or invalidated nodes,
+// and saves a set of what was placed and what needs re-evaluation as
+// a result.
+
+const log = require('proc-log')
+const deepestNestingTarget = require('./deepest-nesting-target.js')
+const CanPlaceDep = require('./can-place-dep.js')
+const {
+  KEEP,
+  CONFLICT,
+} = CanPlaceDep
+const debug = require('./debug.js')
+
+const gatherDepSet = require('./gather-dep-set.js')
+const peerEntrySets = require('./peer-entry-sets.js')
+
+class PlaceDep {
+  constructor (options) {
+    const {
+      dep,
+      edge,
+      parent = null,
+    } = options
+    this.name = edge.name
+    this.dep = dep
+    this.edge = edge
+    this.canPlace = null
+
+    this.target = null
+    this.placed = null
+
+    // inherit all these fields from the parent to ensure consistency.
+    const {
+      preferDedupe,
+      force,
+      explicitRequest,
+      updateNames,
+      auditReport,
+      legacyBundling,
+      strictPeerDeps,
+      legacyPeerDeps,
+      globalStyle,
+    } = parent || options
+    Object.assign(this, {
+      preferDedupe,
+      force,
+      explicitRequest,
+      updateNames,
+      auditReport,
+      legacyBundling,
+      strictPeerDeps,
+      legacyPeerDeps,
+      globalStyle,
+    })
+
+    this.children = []
+    this.parent = parent
+    this.peerConflict = null
+
+    this.checks = new Map()
+
+    this.place()
+  }
+
+  place () {
+    const {
+      edge,
+      dep,
+      preferDedupe,
+      globalStyle,
+      legacyBundling,
+      explicitRequest,
+      updateNames,
+      checks,
+    } = this
+
+    // nothing to do if the edge is fine as it is
+    if (edge.to &&
+        !edge.error &&
+        !explicitRequest &&
+        !updateNames.includes(edge.name) &&
+        !this.isVulnerable(edge.to))
+      return
+
+    // walk up the tree until we hit either a top/root node, or a place
+    // where the dep is not a peer dep.
+    const start = this.getStartNode()
+
+    let canPlace = null
+    let canPlaceSelf = null
+    for (const target of start.ancestry()) {
+      // if the current location has a peerDep on it, then we can't place here
+      // this is pretty rare to hit, since we always prefer deduping peers,
+      // and the getStartNode will start us out above any peers from the
+      // thing that depends on it.  but we could hit it with something like:
+      //
+      // a -> (b@1, c@1)
+      // +-- c@1
+      // +-- b -> PEEROPTIONAL(v) (c@2)
+      //     +-- c@2 -> (v)
+      //
+      // So we check if we can place v under c@2, that's fine.
+      // Then we check under b, and can't, because of the optional peer dep.
+      // but we CAN place it under a, so the correct thing to do is keep
+      // walking up the tree.
+      const targetEdge = target.edgesOut.get(edge.name)
+      if (!target.isTop && targetEdge && targetEdge.peer)
+        continue
+
+      const cpd = new CanPlaceDep({
+        dep,
+        edge,
+        // note: this sets the parent's canPlace as the parent of this
+        // canPlace, but it does NOT add this canPlace to the parent's
+        // children.  This way, we can know that it's a peer dep, and
+        // get the top edge easily, while still maintaining the
+        // tree of checks that factored into the original decision.
+        parent: this.parent && this.parent.canPlace,
+        target,
+        preferDedupe,
+        explicitRequest: this.explicitRequest,
+      })
+      checks.set(target, cpd)
+
+      // It's possible that a "conflict" is a conflict among the *peers* of
+      // a given node we're trying to place, but there actually is no current
+      // node.  Eg,
+      // root -> (a, b)
+      // a -> PEER(c)
+      // b -> PEER(d)
+      // d -> PEER(c@2)
+      // We place (a), and get a peer of (c) along with it.
+      // then we try to place (b), and get CONFLICT in the check, because
+      // of the conflicting peer from (b)->(d)->(c@2).  In that case, we
+      // should treat (b) and (d) as OK, and place them in the last place
+      // where they did not themselves conflict, and skip c@2 if conflict
+      // is ok by virtue of being forced or not ours and not strict.
+      if (cpd.canPlaceSelf !== CONFLICT)
+        canPlaceSelf = cpd
+
+      // we found a place this can go, along with all its peer friends.
+      // we break when we get the first conflict
+      if (cpd.canPlace !== CONFLICT)
+        canPlace = cpd
+      else
+        break
+
+      // if it's a load failure, just plop it in the first place attempted,
+      // since we're going to crash the build or prune it out anyway.
+      // but, this will frequently NOT be a successful canPlace, because
+      // it'll have no version or other information.
+      if (dep.errors.length)
+        break
+
+      // nest packages like npm v1 and v2
+      // very disk-inefficient
+      if (legacyBundling)
+        break
+
+      // when installing globally, or just in global style, we never place
+      // deps above the first level.
+      if (globalStyle) {
+        const rp = target.resolveParent
+        if (rp && rp.isProjectRoot)
+          break
+      }
+    }
+
+    Object.assign(this, {
+      canPlace,
+      canPlaceSelf,
+    })
+    this.current = edge.to
+
+    // if we can't find a target, that means that the last place checked,
+    // and all the places before it, had a conflict.
+    if (!canPlace) {
+      // if not forced, or it's our dep, or strictPeerDeps is set, then
+      // this is an ERESOLVE error.
+      if (!this.conflictOk)
+        return this.failPeerConflict()
+
+      // ok!  we're gonna allow the conflict, but we should still warn
+      // if we have a current, then we treat CONFLICT as a KEEP.
+      // otherwise, we just skip it.  Only warn on the one that actually
+      // could not be placed somewhere.
+      if (!canPlaceSelf) {
+        this.warnPeerConflict()
+        return
+      }
+
+      this.canPlace = canPlaceSelf
+    }
+
+    // now we have a target, a tree of CanPlaceDep results for the peer group,
+    // and we are ready to go
+    this.placeInTree()
+  }
+
+  placeInTree () {
+    const {
+      dep,
+      canPlace,
+      edge,
+    } = this
+
+    /* istanbul ignore next */
+    if (!canPlace) {
+      debug(() => {
+        throw new Error('canPlace not set, but trying to place in tree')
+      })
+      return
+    }
+
+    const { target } = canPlace
+
+    log.silly(
+      'placeDep',
+      target.location || 'ROOT',
+      `${dep.name}@${dep.version}`,
+      canPlace.description,
+      `for: ${this.edge.from.package._id || this.edge.from.location}`,
+      `want: ${edge.spec || '*'}`
+    )
+
+    const placementType = canPlace.canPlace === CONFLICT
+      ? canPlace.canPlaceSelf
+      : canPlace.canPlace
+
+    // if we're placing in the tree with --force, we can get here even though
+    // it's a conflict.  Treat it as a KEEP, but warn and move on.
+    if (placementType === KEEP) {
+      // this was an overridden peer dep
+      if (edge.peer && !edge.valid)
+        this.warnPeerConflict()
+
+      // if we get a KEEP in a update scenario, then we MAY have something
+      // already duplicating this unnecessarily!  For example:
+      // ```
+      // root (dep: y@1)
+      // +-- x (dep: y@1.1)
+      // |   +-- y@1.1.0 (replacing with 1.1.2, got KEEP at the root)
+      // +-- y@1.1.2 (updated already from 1.0.0)
+      // ```
+      // Now say we do `reify({update:['y']})`, and the latest version is
+      // 1.1.2, which we now have in the root.  We'll try to place y@1.1.2
+      // first in x, then in the root, ending with KEEP, because we already
+      // have it.  In that case, we ought to REMOVE the nm/x/nm/y node, because
+      // it is an unnecessary duplicate.
+      this.pruneDedupable(target)
+      return
+    }
+
+    // XXX if we are replacing SOME of a peer entry group, we will need to
+    // remove any that are not being replaced and will now be invalid, and
+    // re-evaluate them deeper into the tree.
+
+    const virtualRoot = dep.parent
+    this.placed = new dep.constructor({
+      name: dep.name,
+      pkg: dep.package,
+      resolved: dep.resolved,
+      integrity: dep.integrity,
+      legacyPeerDeps: this.legacyPeerDeps,
+      error: dep.errors[0],
+      ...(dep.isLink ? { target: dep.target, realpath: dep.target.path } : {}),
+    })
+
+    this.oldDep = target.children.get(this.name)
+    if (this.oldDep)
+      this.replaceOldDep()
+    else
+      this.placed.parent = target
+
+    // if it's an overridden peer dep, warn about it
+    if (edge.peer && !this.placed.satisfies(edge))
+      this.warnPeerConflict()
+
+    // If the edge is not an error, then we're updating something, and
+    // MAY end up putting a better/identical node further up the tree in
+    // a way that causes an unnecessary duplication.  If so, remove the
+    // now-unnecessary node.
+    if (edge.valid && edge.to && edge.to !== this.placed)
+      this.pruneDedupable(edge.to, false)
+
+    // in case we just made some duplicates that can be removed,
+    // prune anything deeper in the tree that can be replaced by this
+    for (const node of target.root.inventory.query('name', this.name)) {
+      if (node.isDescendantOf(target) && !node.isTop) {
+        this.pruneDedupable(node, false)
+        // only walk the direct children of the ones we kept
+        if (node.root === target.root) {
+          for (const kid of node.children.values())
+            this.pruneDedupable(kid, false)
+        }
+      }
+    }
+
+    // also place its unmet or invalid peer deps at this location
+    // loop through any peer deps from the thing we just placed, and place
+    // those ones as well.  it's safe to do this with the virtual nodes,
+    // because we're copying rather than moving them out of the virtual root,
+    // otherwise they'd be gone and the peer set would change throughout
+    // this loop.
+    for (const peerEdge of this.placed.edgesOut.values()) {
+      if (peerEdge.valid || !peerEdge.peer || peerEdge.overridden)
+        continue
+
+      const peer = virtualRoot.children.get(peerEdge.name)
+
+      // Note: if the virtualRoot *doesn't* have the peer, then that means
+      // it's an optional peer dep.  If it's not being properly met (ie,
+      // peerEdge.valid is false), then this is likely heading for an
+      // ERESOLVE error, unless it can walk further up the tree.
+      if (!peer)
+        continue
+
+      // overridden peerEdge, just accept what's there already
+      if (!peer.satisfies(peerEdge))
+        continue
+
+      this.children.push(new PlaceDep({
+        parent: this,
+        dep: peer,
+        node: this.placed,
+        edge: peerEdge,
+      }))
+    }
+  }
+
+  replaceOldDep () {
+    // XXX handle replacing an entire peer group?
+    // what about cases where we need to push some other peer groups deeper
+    // into the tree?  all the tree updating should be done here, and track
+    // all the things that we add and remove, so that we can know what
+    // to re-evaluate.
+
+    // if we're replacing, we should also remove any nodes for edges that
+    // are now invalid, and where this (or its deps) is the only dependent,
+    // and also recurse on that pruning.  Otherwise leaving that dep node
+    // around can result in spurious conflicts pushing nodes deeper into
+    // the tree than needed in the case of cycles that will be removed
+    // later anyway.
+    const oldDeps = []
+    for (const [name, edge] of this.oldDep.edgesOut.entries()) {
+      if (!this.placed.edgesOut.has(name) && edge.to)
+        oldDeps.push(...gatherDepSet([edge.to], e => e.to !== edge.to))
+    }
+    this.placed.replace(this.oldDep)
+    this.pruneForReplacement(this.placed, oldDeps)
+  }
+
+  pruneForReplacement (node, oldDeps) {
+    // gather up all the now-invalid/extraneous edgesOut, as long as they are
+    // only depended upon by the old node/deps
+    const invalidDeps = new Set([...node.edgesOut.values()]
+      .filter(e => e.to && !e.valid).map(e => e.to))
+    for (const dep of oldDeps) {
+      const set = gatherDepSet([dep], e => e.to !== dep && e.valid)
+      for (const dep of set)
+        invalidDeps.add(dep)
+    }
+
+    // ignore dependency edges from the node being replaced, but
+    // otherwise filter the set down to just the set with no
+    // dependencies from outside the set, except the node in question.
+    const deps = gatherDepSet(invalidDeps, edge =>
+      edge.from !== node && edge.to !== node && edge.valid)
+
+    // now just delete whatever's left, because it's junk
+    for (const dep of deps)
+      dep.root = null
+  }
+
+  // prune all the nodes in a branch of the tree that can be safely removed
+  // This is only the most basic duplication detection; it finds if there
+  // is another satisfying node further up the tree, and if so, dedupes.
+  // Even in legacyBundling mode, we do this amount of deduplication.
+  pruneDedupable (node, descend = true) {
+    if (node.canDedupe(this.preferDedupe)) {
+      // gather up all deps that have no valid edges in from outside
+      // the dep set, except for this node we're deduping, so that we
+      // also prune deps that would be made extraneous.
+      const deps = gatherDepSet([node], e => e.to !== node && e.valid)
+      for (const node of deps)
+        node.root = null
+      return
+    }
+    if (descend) {
+      // sort these so that they're deterministically ordered
+      // otherwise, resulting tree shape is dependent on the order
+      // in which they happened to be resolved.
+      const nodeSort = (a, b) => a.location.localeCompare(b.location, 'en')
+
+      const children = [...node.children.values()].sort(nodeSort)
+      for (const child of children)
+        this.pruneDedupable(child)
+      const fsChildren = [...node.fsChildren].sort(nodeSort)
+      for (const topNode of fsChildren) {
+        const children = [...topNode.children.values()].sort(nodeSort)
+        for (const child of children)
+          this.pruneDedupable(child)
+      }
+    }
+  }
+
+  get conflictOk () {
+    return this.force || (!this.isMine && !this.strictPeerDeps)
+  }
+
+  get isMine () {
+    const { edge } = this.top
+    const { from: node } = edge
+
+    if (node.isWorkspace || node.isProjectRoot)
+      return true
+
+    if (!edge.peer)
+      return false
+
+    // re-entry case.  check if any non-peer edges come from the project,
+    // or any entryEdges on peer groups are from the root.
+    let hasPeerEdges = false
+    for (const edge of node.edgesIn) {
+      if (edge.peer) {
+        hasPeerEdges = true
+        continue
+      }
+      if (edge.from.isWorkspace || edge.from.isProjectRoot)
+        return true
+    }
+    if (hasPeerEdges) {
+      for (const edge of peerEntrySets(node).keys()) {
+        if (edge.from.isWorkspace || edge.from.isProjectRoot)
+          return true
+      }
+    }
+
+    return false
+  }
+
+  warnPeerConflict () {
+    this.edge.overridden = true
+    const expl = this.explainPeerConflict()
+    log.warn('ERESOLVE', 'overriding peer dependency', expl)
+  }
+
+  failPeerConflict () {
+    const expl = this.explainPeerConflict()
+    throw Object.assign(new Error('could not resolve'), expl)
+  }
+
+  explainPeerConflict () {
+    const { edge, dep } = this.top
+    const { from: node } = edge
+    const curNode = node.resolve(edge.name)
+
+    const expl = {
+      code: 'ERESOLVE',
+      edge: edge.explain(),
+      dep: dep.explain(edge),
+    }
+
+    if (this.parent) {
+      // this is the conflicted peer
+      expl.current = curNode && curNode.explain(edge)
+      expl.peerConflict = this.current && this.current.explain(this.edge)
+    } else {
+      expl.current = curNode && curNode.explain()
+      if (this.canPlaceSelf && this.canPlaceSelf.canPlaceSelf !== CONFLICT) {
+        // failed while checking for a child dep
+        const cps = this.canPlaceSelf
+        for (const peer of cps.conflictChildren) {
+          if (peer.current) {
+            expl.peerConflict = {
+              current: peer.current.explain(),
+              peer: peer.dep.explain(peer.edge),
+            }
+            break
+          }
+        }
+      } else {
+        expl.peerConflict = {
+          current: this.current && this.current.explain(),
+          peer: this.dep.explain(this.edge),
+        }
+      }
+    }
+
+    const {
+      strictPeerDeps,
+      force,
+      isMine,
+    } = this
+    Object.assign(expl, {
+      strictPeerDeps,
+      force,
+      isMine,
+    })
+
+    // XXX decorate more with this.canPlace and this.canPlaceSelf,
+    // this.checks, this.children, walk over conflicted peers, etc.
+    return expl
+  }
+
+  getStartNode () {
+    // if we are a peer, then we MUST be at least as shallow as the
+    // peer dependent
+    const from = this.parent ? this.parent.getStartNode() : this.edge.from
+    return deepestNestingTarget(from, this.name)
+  }
+
+  get top () {
+    return this.parent ? this.parent.top : this
+  }
+
+  isVulnerable (node) {
+    return this.auditReport && this.auditReport.isVulnerable(node)
+  }
+
+  get allChildren () {
+    const set = new Set(this.children)
+    for (const child of set) {
+      for (const grandchild of child.children)
+        set.add(grandchild)
+    }
+    return [...set]
+  }
+}
+
+module.exports = PlaceDep

package/lib/printable.js

@@ -31,6 +31,10 @@ class ArboristNode {
       this.bundled = true
     if (tree.inDepBundle)
       this.bundler = tree.getBundler().location
+    if (tree.isProjectRoot)
+      this.isProjectRoot = true
+    if (tree.isWorkspace)
+      this.isWorkspace = true
     const bd = tree.package && tree.package.bundleDependencies
     if (bd && bd.length)
       this.bundleDependencies = bd
@@ -107,6 +111,8 @@ class Edge {
     this.spec = edge.spec || '*'
     if (edge.error)
       this.error = edge.error
+    if (edge.overridden)
+      this.overridden = edge.overridden
   }
 }
 
@@ -122,6 +128,8 @@ class EdgeOut extends Edge {
       this.to ? ' -> ' + this.to : ''
     }${
       this.error ? ' ' + this.error : ''
+    }${
+      this.overridden ? ' overridden' : ''
     } }`
   }
 }
@@ -136,6 +144,8 @@ class EdgeIn extends Edge {
   [util.inspect.custom] () {
     return `{ ${this.from || '""'} ${this.type} ${this.name}@${this.spec}${
       this.error ? ' ' + this.error : ''
+    }${
+      this.overridden ? ' overridden' : ''
     } }`
   }
 }

package/lib/shrinkwrap.js

@@ -183,8 +183,10 @@ const assertNoNewer = async (path, data, lockTime, dir = path, seen = null) => {
         await assertNoNewer(path, data, lockTime, child, seen)
       else if (ent.isSymbolicLink()) {
         const target = resolve(parent, await readlink(child))
-        const tstat = await stat(target).catch(() => null)
+        const tstat = await stat(target).catch(
+          /* istanbul ignore next - windows */ () => null)
         seen.add(relpath(path, child))
+        /* istanbul ignore next - windows cannot do this */
         if (tstat && tstat.isDirectory() && !seen.has(relpath(path, target)))
           await assertNoNewer(path, data, lockTime, target, seen)
       }
@@ -349,6 +351,7 @@ class Shrinkwrap {
   reset () {
     this.tree = null
     this[_awaitingUpdate] = new Map()
+    this.originalLockfileVersion = lockfileVersion
     this.data = {
       lockfileVersion,
       requires: true,
@@ -801,7 +804,7 @@ class Shrinkwrap {
     if (this.tree) {
       if (this.yarnLock)
         this.yarnLock.fromTree(this.tree)
-      const root = Shrinkwrap.metaFromNode(this.tree.target || this.tree, this.path)
+      const root = Shrinkwrap.metaFromNode(this.tree.target, this.path)
       this.data.packages = {}
       if (Object.keys(root).length)
         this.data.packages[''] = root
@@ -863,7 +866,7 @@ class Shrinkwrap {
     const spec = !edge ? rSpec
       : npa.resolve(node.name, edge.spec, edge.from.realpath)
 
-    if (node.target)
+    if (node.isLink)
       lock.version = `file:${relpath(this.path, node.realpath)}`
     else if (spec && (spec.type === 'file' || spec.type === 'remote'))
       lock.version = spec.saveSpec
@@ -887,7 +890,7 @@ class Shrinkwrap {
     // when we didn't resolve to git, file, or dir, and didn't request
     // git, file, dir, or remote, then the resolved value is necessary.
     if (node.resolved &&
-        !node.target &&
+        !node.isLink &&
         rSpec.type !== 'git' &&
         rSpec.type !== 'file' &&
         rSpec.type !== 'directory' &&
@@ -916,7 +919,7 @@ class Shrinkwrap {
         lock.optional = true
     }
 
-    const depender = node.target || node
+    const depender = node.target
     if (depender.edgesOut.size > 0) {
       if (node !== this.tree) {
         lock.requires = [...depender.edgesOut.entries()].reduce((set, [k, v]) => {
@@ -941,7 +944,7 @@ class Shrinkwrap {
     }
 
     // now we walk the children, putting them in the 'dependencies' object
-    const {children} = node.target || node
+    const {children} = node.target
     if (!children.size)
       delete lock.dependencies
     else {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@npmcli/arborist",
-  "version": "2.6.3",
+  "version": "2.8.0",
   "description": "Manage node_modules trees",
   "dependencies": {
     "@npmcli/installed-package-contents": "^1.0.7",
@@ -9,25 +9,29 @@
     "@npmcli/move-file": "^1.1.0",
     "@npmcli/name-from-folder": "^1.0.1",
     "@npmcli/node-gyp": "^1.0.1",
+    "@npmcli/package-json": "^1.0.1",
     "@npmcli/run-script": "^1.8.2",
     "bin-links": "^2.2.1",
     "cacache": "^15.0.3",
     "common-ancestor-path": "^1.0.1",
     "json-parse-even-better-errors": "^2.3.1",
     "json-stringify-nice": "^1.1.4",
+    "mkdirp": "^1.0.4",
     "mkdirp-infer-owner": "^2.0.0",
     "npm-install-checks": "^4.0.0",
-    "npm-package-arg": "^8.1.0",
+    "npm-package-arg": "^8.1.5",
     "npm-pick-manifest": "^6.1.0",
     "npm-registry-fetch": "^11.0.0",
-    "pacote": "^11.2.6",
+    "pacote": "^11.3.5",
     "parse-conflict-json": "^1.1.1",
     "proc-log": "^1.0.0",
     "promise-all-reject-late": "^1.0.0",
     "promise-call-limit": "^1.0.1",
     "read-package-json-fast": "^2.0.2",
     "readdir-scoped-modules": "^1.1.0",
+    "rimraf": "^3.0.2",
     "semver": "^7.3.5",
+    "ssri": "^8.0.1",
     "tar": "^6.1.0",
     "treeverse": "^1.0.4",
     "walk-up-path": "^1.0.0"
@@ -49,7 +53,7 @@
     "test-only": "tap",
     "posttest": "npm run lint",
     "snap": "tap",
-    "postsnap": "npm run lint",
+    "postsnap": "npm run lintfix",
     "test-proxy": "ARBORIST_TEST_PROXY=1 tap --snapshot",
     "preversion": "npm test",
     "postversion": "npm publish",