@noyrax/5d-database-plugin 0.1.14-beta.4 → 0.1.14-beta.6

package/out/repositories/symbol-repository.js

@@ -10,8 +10,8 @@ class SymbolRepository extends base_repository_1.BaseRepositoryImpl {
         super(db, 'Y');
     }
     async create(symbol) {
-        await this.execute(`INSERT INTO symbols (id, plugin_id, symbol_id, path, kind, name, signature_json, signature_hash, summary, deleted_at, created_at, updated_at)
-             VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`, [
+        await this.execute(`INSERT INTO symbols (id, plugin_id, symbol_id, path, kind, name, signature_json, signature_hash, summary, start_line, end_line, start_col, end_col, byte_offset_start, byte_offset_end, deleted_at, created_at, updated_at)
+             VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`, [
             symbol.id,
             symbol.plugin_id,
             symbol.symbol_id,
@@ -21,6 +21,12 @@ class SymbolRepository extends base_repository_1.BaseRepositoryImpl {
             symbol.signature_json,
             symbol.signature_hash,
             symbol.summary,
+            symbol.start_line,
+            symbol.end_line,
+            symbol.start_col,
+            symbol.end_col,
+            symbol.byte_offset_start,
+            symbol.byte_offset_end,
             symbol.deleted_at,
             symbol.created_at,
             symbol.updated_at
@@ -43,7 +49,7 @@ class SymbolRepository extends base_repository_1.BaseRepositoryImpl {
     }
     async update(symbol) {
         await this.execute(`UPDATE symbols 
-             SET path = ?, kind = ?, name = ?, signature_json = ?, signature_hash = ?, summary = ?, deleted_at = ?, updated_at = ?
+             SET path = ?, kind = ?, name = ?, signature_json = ?, signature_hash = ?, summary = ?, start_line = ?, end_line = ?, start_col = ?, end_col = ?, byte_offset_start = ?, byte_offset_end = ?, deleted_at = ?, updated_at = ?
              WHERE id = ? AND plugin_id = ?`, [
             symbol.path,
             symbol.kind,
@@ -51,6 +57,12 @@ class SymbolRepository extends base_repository_1.BaseRepositoryImpl {
             symbol.signature_json,
             symbol.signature_hash,
             symbol.summary,
+            symbol.start_line,
+            symbol.end_line,
+            symbol.start_col,
+            symbol.end_col,
+            symbol.byte_offset_start,
+            symbol.byte_offset_end,
             symbol.deleted_at,
             symbol.updated_at,
             symbol.id,
@@ -126,6 +138,12 @@ class SymbolRepository extends base_repository_1.BaseRepositoryImpl {
             signature_json: row.signature_json,
             signature_hash: row.signature_hash,
             summary: row.summary,
+            start_line: row.start_line !== null && row.start_line !== undefined ? row.start_line : null,
+            end_line: row.end_line !== null && row.end_line !== undefined ? row.end_line : null,
+            start_col: row.start_col !== null && row.start_col !== undefined ? row.start_col : null,
+            end_col: row.end_col !== null && row.end_col !== undefined ? row.end_col : null,
+            byte_offset_start: row.byte_offset_start !== null && row.byte_offset_start !== undefined ? row.byte_offset_start : null,
+            byte_offset_end: row.byte_offset_end !== null && row.byte_offset_end !== undefined ? row.byte_offset_end : null,
             deleted_at: row.deleted_at ? new Date(row.deleted_at) : null,
             created_at: new Date(row.created_at),
             updated_at: new Date(row.updated_at)

package/out/repositories/symbol-repository.js.map

@@ -1 +1 @@
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+{"version":3,"file":"symbol-repository.js","sourceRoot":"","sources":["../../src/repositories/symbol-repository.ts"],"names":[],"mappings":";;;AACA,uDAAuD;AAIvD;;GAEG;AACH,MAAa,gBAAiB,SAAQ,oCAA0B;IAC5D,YAAY,EAAoB;QAC5B,KAAK,CAAC,EAAE,EAAE,GAAG,CAAC,CAAC;IACnB,CAAC;IAEM,KAAK,CAAC,MAAM,CAAC,MAAc;QAC9B,MAAM,IAAI,CAAC,OAAO,CACd;2EAC+D,EAC/D;YACI,MAAM,CAAC,EAAE;YACT,MAAM,CAAC,SAAS;YAChB,MAAM,CAAC,SAAS;YAChB,MAAM,CAAC,IAAI;YACX,MAAM,CAAC,IAAI;YACX,MAAM,CAAC,IAAI;YACX,MAAM,CAAC,cAAc;YACrB,MAAM,CAAC,cAAc;YACrB,MAAM,CAAC,OAAO;YACd,MAAM,CAAC,UAAU;YACjB,MAAM,CAAC,QAAQ;YACf,MAAM,CAAC,SAAS;YAChB,MAAM,CAAC,OAAO;YACd,MAAM,CAAC,iBAAiB;YACxB,MAAM,CAAC,eAAe;YACtB,MAAM,CAAC,UAAU;YACjB,MAAM,CAAC,UAAU;YACjB,MAAM,CAAC,UAAU;SACpB,CACJ,CAAC;QACF,OAAO,MAAM,CAAC;IAClB,CAAC;IAEM,KAAK,CAAC,OAAO,CAAC,EAAU,EAAE,QAAgB;QAC7C,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,QAAQ,CAC3B,sDAAsD,EACtD,CAAC,EAAE,EAAE,QAAQ,CAAC,CACjB,CAAC;QAEF,IAAI,CAAC,GAAG,EAAE,CAAC;YACP,OAAO,IAAI,CAAC;QAChB,CAAC;QAED,OAAO,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC;IACpC,CAAC;IAEM,KAAK,CAAC,aAAa,CAAC,QAAgB,EAAE,QAAgB;QACzD,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,QAAQ,CAC3B,6DAA6D,EAC7D,CAAC,QAAQ,EAAE,QAAQ,CAAC,CACvB,CAAC;QAEF,IAAI,CAAC,GAAG,EAAE,CAAC;YACP,OAAO,IAAI,CAAC;QAChB,CAAC;QAED,OAAO,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC;IACpC,CAAC;IAEM,KAAK,CAAC,MAAM,CAAC,MAAc;QAC9B,MAAM,IAAI,CAAC,OAAO,CACd;;4CAEgC,EAChC;YACI,MAAM,CAAC,IAAI;YACX,MAAM,CAAC,IAAI;YACX,MAAM,CAAC,IAAI;YACX,MAAM,CAAC,cAAc;YACrB,MAAM,CAAC,cAAc;YACrB,MAAM,CAAC,OAAO;YACd,MAAM,CAAC,UAAU;YACjB,MAAM,CAAC,QAAQ;YACf,MAAM,CAAC,SAAS;YAChB,MAAM,CAAC,OAAO;YACd,MAAM,CAAC,iBAAiB;YACxB,MAAM,CAAC,eAAe;YACtB,MAAM,CAAC,UAAU;YACjB,MAAM,CAAC,UAAU;YACjB,MAAM,CAAC,EAAE;YACT,MAAM,CAAC,SAAS;SACnB,CACJ,CAAC;QACF,OAAO,MAAM,CAAC;IAClB,CAAC;IAEM,KAAK,CAAC,MAAM,CAAC,EAAU,EAAE,QAAgB;QAC5C,MAAM,IAAI,CAAC,OAAO,CACd,kFAAkF,EAClF,CAAC,EAAE,EAAE,QAAQ,CAAC,CACjB,CAAC;IACN,CAAC;IAEM,KAAK,CAAC,MAAM,CAAC,QAAgB;QAChC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAC5B,sFAAsF,EACtF,CAAC,QAAQ,CAAC,CACb,CAAC;QAEF,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC;IACrD,CAAC;IAEM,KAAK,CAAC,MAAM,CAAC,EAAU,EAAE,QAAgB;QAC5C,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,QAAQ,CAC3B,sEAAsE,EACtE,CAAC,EAAE,EAAE,QAAQ,CAAC,CACjB,CAAC;QACF,OAAO,GAAG,KAAK,IAAI,IAAI,GAAG,CAAC,KAAK,GAAG,CAAC,CAAC;IACzC,CAAC;IAED;;OAEG;IACI,KAAK,CAAC,UAAU,CAAC,IAAY,EAAE,QAAgB;QAClD,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAC5B,+EAA+E,EAC/E,CAAC,IAAI,EAAE,QAAQ,CAAC,CACnB,CAAC;QAEF,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC;IACrD,CAAC;IAED;;OAEG;IACI,KAAK,CAAC,mBAAmB,CAAC,aAAqB,EAAE,QAAgB;QACpE,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAC5B,yFAAyF,EACzF,CAAC,aAAa,EAAE,QAAQ,CAAC,CAC5B,CAAC;QAEF,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC;IACrD,CAAC;IAED;;OAEG;IACI,KAAK,CAAC,sBAAsB,CAAC,UAA4B;QAC5D,MAAM,IAAI,CAAC,OAAO,CACd;uCAC2B,EAC3B;YACI,UAAU,CAAC,EAAE;YACb,UAAU,CAAC,SAAS;YACpB,UAAU,CAAC,iBAAiB;YAC5B,UAAU,CAAC,uBAAuB;YAClC,UAAU,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;YAC/B,UAAU,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;SACjC,CACJ,CAAC;QACF,OAAO,UAAU,CAAC;IACtB,CAAC;IAED;;OAEG;IACI,KAAK,CAAC,qBAAqB,CAAC,QAAgB;QAC/C,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,QAAQ,CAC5B,uDAAuD,EACvD,CAAC,QAAQ,CAAC,CACb,CAAC;QAEF,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;YACpB,EAAE,EAAE,GAAG,CAAC,EAAE;YACV,SAAS,EAAE,GAAG,CAAC,SAAS;YACxB,iBAAiB,EAAE,GAAG,CAAC,iBAAiB;YACxC,uBAAuB,EAAE,GAAG,CAAC,uBAAuB;YACpD,YAAY,EAAE,GAAG,CAAC,YAAY,KAAK,CAAC;YACpC,WAAW,EAAE,GAAG,CAAC,WAAW,KAAK,CAAC;SACrC,CAAC,CAAC,CAAC;IACR,CAAC;IAED;;OAEG;IACK,cAAc,CAAC,GAAQ;QAC3B,OAAO;YACH,EAAE,EAAE,GAAG,CAAC,EAAE;YACV,SAAS,EAAE,GAAG,CAAC,SAAS;YACxB,SAAS,EAAE,GAAG,CAAC,SAAS;YACxB,IAAI,EAAE,GAAG,CAAC,IAAI;YACd,IAAI,EAAE,GAAG,CAAC,IAAI;YACd,IAAI,EAAE,GAAG,CAAC,IAAI;YACd,cAAc,EAAE,GAAG,CAAC,cAAc;YAClC,cAAc,EAAE,GAAG,CAAC,cAAc;YAClC,OAAO,EAAE,GAAG,CAAC,OAAO;YACpB,UAAU,EAAE,GAAG,CAAC,UAAU,KAAK,IAAI,IAAI,GAAG,CAAC,UAAU,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI;YAC3F,QAAQ,EAAE,GAAG,CAAC,QAAQ,KAAK,IAAI,IAAI,GAAG,CAAC,QAAQ,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI;YACnF,SAAS,EAAE,GAAG,CAAC,SAAS,KAAK,IAAI,IAAI,GAAG,CAAC,SAAS,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI;YACvF,OAAO,EAAE,GAAG,CAAC,OAAO,KAAK,IAAI,IAAI,GAAG,CAAC,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,IAAI;YAC/E,iBAAiB,EAAE,GAAG,CAAC,iBAAiB,KAAK,IAAI,IAAI,GAAG,CAAC,iBAAiB,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,iBAAiB,CAAC,CAAC,CAAC,IAAI;YACvH,eAAe,EAAE,GAAG,CAAC,eAAe,KAAK,IAAI,IAAI,GAAG,CAAC,eAAe,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,IAAI;YAC/G,UAAU,EAAE,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,IAAI;YAC5D,UAAU,EAAE,IAAI,IAAI,CAAC,GAAG,CAAC,UAAU,CAAC;YACpC,UAAU,EAAE,IAAI,IAAI,CAAC,GAAG,CAAC,UAAU,CAAC;SACvC,CAAC;IACN,CAAC;CACJ;AArMD,4CAqMC"}

package/package.json

@@ -2,7 +2,7 @@
   "name": "@noyrax/5d-database-plugin",
   "displayName": "5D Database Plugin",
   "description": "5-dimensional database layer for documentation system with semantic brain integration. Provides SQLite databases for modules, symbols, dependencies, ADRs, and changes. Includes semantic search and MCP server integration for AI agents.",
-  "version": "0.1.14-beta.4",
+  "version": "0.1.14-beta.6",
   "publisher": "noyrax",
   "license": "MIT",
   "repository": {
@@ -60,11 +60,11 @@
   },
   "bin": {
     "noyrax-5d-database": "./out/cli/ingest-cli.js",
-    "noyrax-5d-database-mcp": "./out/cli/mcp-server-cli.js",
     "noyrax-5d-database-query": "./out/cli/query-cli.js",
     "noyrax-5d-database-tool": "./out/cli/tool-cli.js",
     "noyrax-5d-database-search": "./out/cli/semantic-search-cli.js",
-    "noyrax-5d-database-embedding": "./out/cli/embedding-cli.js"
+    "noyrax-5d-database-embedding": "./out/cli/embedding-cli.js",
+    "noyrax-5d-database-debug-plugin-id": "./out/cli/debug-plugin-id.js"
   },
   "contributes": {
     "commands": [

package/schemas/sqlite/007_add_source_code_spans.sql

@@ -0,0 +1,19 @@
+-- Migration 007: Add source code span tracking to symbols and modules tables
+-- Adds line/column/byte offset tracking for source code location
+
+-- Add span tracking columns to symbols table
+ALTER TABLE symbols ADD COLUMN start_line INTEGER;
+ALTER TABLE symbols ADD COLUMN end_line INTEGER;
+ALTER TABLE symbols ADD COLUMN start_col INTEGER;
+ALTER TABLE symbols ADD COLUMN end_col INTEGER;
+ALTER TABLE symbols ADD COLUMN byte_offset_start INTEGER;
+ALTER TABLE symbols ADD COLUMN byte_offset_end INTEGER;
+
+-- Add index for span lookups
+CREATE INDEX IF NOT EXISTS idx_symbols_span 
+ON symbols(path, start_line, end_line);
+
+-- Add file size metadata to modules table
+ALTER TABLE modules ADD COLUMN line_count INTEGER;
+ALTER TABLE modules ADD COLUMN byte_size INTEGER;
+

package/schemas/sqlite/008_add_source_access_config.sql

@@ -0,0 +1,33 @@
+-- Migration 008: Add source access config table to V-Dimension
+-- Stores runtime contract for source code access (AVAILABLE/UNAVAILABLE/PARTIAL)
+
+CREATE TABLE IF NOT EXISTS source_access_config (
+    id TEXT PRIMARY KEY DEFAULT 'singleton',
+    status TEXT NOT NULL CHECK(status IN ('AVAILABLE', 'UNAVAILABLE', 'PARTIAL')),
+    resolver_type TEXT CHECK(resolver_type IN ('FILESYSTEM', 'GIT', 'REMOTE', 'SNAPSHOT')),
+    workspace_root TEXT,
+    
+    -- Constraints
+    max_bytes_per_request INTEGER DEFAULT 51200,      -- 50KB
+    max_lines_per_request INTEGER DEFAULT 500,
+    max_concurrent_requests INTEGER DEFAULT 5,
+    redactions_json TEXT,  -- JSON array of patterns
+    
+    -- Reason codes (when UNAVAILABLE/PARTIAL)
+    reason_codes_json TEXT,  -- JSON array of codes
+    
+    -- Provenance
+    verified_at TEXT NOT NULL,  -- ISO timestamp
+    evidence_grade TEXT NOT NULL CHECK(evidence_grade IN ('DETERMINISTIC', 'INFERRED')),
+    
+    created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
+    updated_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
+    
+    -- Ensure only one row exists
+    CHECK(id = 'singleton')
+);
+
+-- Initialize with default UNAVAILABLE state
+INSERT OR IGNORE INTO source_access_config (id, status, verified_at, evidence_grade)
+VALUES ('singleton', 'UNAVAILABLE', datetime('now'), 'DETERMINISTIC');
+