@novis10813/secondbrain-cli 0.1.0 → 0.1.2

package/dist/utils/vault.js

@@ -6,12 +6,15 @@ const path_1 = require("path");
 const database_js_1 = require("./database.js");
 const parser_js_1 = require("./parser.js");
 class VaultManager {
-    config;
+    _config;
     db;
     constructor(config) {
-        this.config = config;
+        this._config = config;
         this.db = new database_js_1.DatabaseManager(config);
     }
+    get config() {
+        return this._config;
+    }
     close() {
         this.db.close();
     }
@@ -22,59 +25,94 @@ class VaultManager {
         let removed = 0;
         const currentPaths = new Set();
         const markdownFiles = this.findMarkdownFiles();
-        // Pass 1: Collect all files and upsert basic metadata with empty links
+        const parsedByPath = new Map();
+        // Pass 1: Collect all files, parse once, upsert FileInfo + ContentMetadata
         for (const filePath of markdownFiles) {
-            const relativePath = (0, path_1.relative)(this.config.vaultPath, filePath);
+            const relativePath = (0, path_1.relative)(this._config.vaultPath, filePath);
             currentPaths.add(relativePath);
             const content = (0, fs_1.readFileSync)(filePath, 'utf-8');
             const hash = parser_js_1.NoteParser.computeHash(content);
-            // Check if note exists and if hash changed
-            const existingNote = this.db.getNoteByPath(relativePath);
-            if (!existingNote) {
-                // New note - create with empty links
-                const note = await this.createNoteFromFile(relativePath, content, hash, []);
-                this.db.upsertNote(note);
+            const existingHash = this.db.getFileContentHash(relativePath);
+            if (existingHash === hash) {
+                // Skip parsing, load existing metadata for Pass 2 link resolution
+                const existingMetadata = this.db.getContentMetadata(relativePath);
+                if (existingMetadata) {
+                    parsedByPath.set(relativePath, {
+                        title: '',
+                        content: '',
+                        frontmatter: {},
+                        tags: [],
+                        links: existingMetadata.links ?? [],
+                        headings: [],
+                        blocks: []
+                    });
+                    continue;
+                }
+            }
+            const parsed = parser_js_1.NoteParser.parse(content);
+            parsedByPath.set(relativePath, parsed);
+            const existingFile = this.db.getFileByPath(relativePath);
+            const isNew = !existingFile;
+            const fileInfo = this.createFileInfo(relativePath, filePath);
+            const contentMetadata = parser_js_1.NoteParser.parsedToContentMetadata(parsed, content);
+            this.db.upsertFile(fileInfo, hash);
+            this.db.upsertContentMetadata(relativePath, contentMetadata, hash);
+            if (isNew) {
                 added++;
             }
-            else if (existingNote.hash !== hash) {
-                // Updated note - preserve ID, use empty links initially
-                const note = await this.createNoteFromFile(relativePath, content, hash, []);
-                note.id = existingNote.id; // Keep same ID
-                this.db.upsertNote(note);
+            else {
                 updated++;
             }
         }
-        // Pass 2: Resolve links against populated database
-        for (const filePath of markdownFiles) {
-            const relativePath = (0, path_1.relative)(this.config.vaultPath, filePath);
-            const content = (0, fs_1.readFileSync)(filePath, 'utf-8');
-            const parsed = parser_js_1.NoteParser.parse(content);
-            // Get the note ID
-            const note = this.db.getNoteByPath(relativePath);
-            if (note) {
-                // Resolve link titles to note IDs
-                const linkIds = [];
-                for (const linkTitle of parsed.links) {
-                    const linkedNote = this.findNoteByTitleOrPath(linkTitle);
-                    if (linkedNote) {
-                        linkIds.push(linkedNote.id);
-                    }
+        // Pass 2: Resolve link targets using cached parsed data (no second read/parse)
+        for (const [relativePath, parsed] of parsedByPath) {
+            for (const link of parsed.links) {
+                // Guard: skip links with undefined/non-string targets (e.g. from template placeholders)
+                if (!link.target || typeof link.target !== 'string')
+                    continue;
+                const linkedFile = this.getFirstLinkpathDest(link.target, relativePath);
+                if (linkedFile) {
+                    this.db.updateLinkTarget(relativePath, link.position.start.offset, linkedFile.path, null);
                 }
-                // Update note with resolved links
-                note.links = linkIds;
-                this.db.upsertNote(note);
             }
         }
-        // Remove notes that no longer exist in filesystem
-        const allNotes = this.db.getAllNotes();
-        for (const note of allNotes) {
-            if (!currentPaths.has(note.path)) {
-                this.db.deleteNoteByPath(note.path);
+        // Remove files that no longer exist in filesystem
+        const allFiles = this.db.getAllFiles();
+        for (const file of allFiles) {
+            if (!currentPaths.has(file.path)) {
+                this.db.deleteFile(file.path);
                 removed++;
             }
         }
         return { added, updated, removed };
     }
+    /**
+     * Rapidly index a single file without a full vault scan.
+     * Useful for capture or real-time updates.
+     */
+    indexSingleFile(relativePath) {
+        const fullPath = (0, path_1.join)(this._config.vaultPath, relativePath);
+        if (!(0, fs_1.existsSync)(fullPath)) {
+            throw new Error(`File not found: ${fullPath}`);
+        }
+        const content = (0, fs_1.readFileSync)(fullPath, 'utf-8');
+        const hash = parser_js_1.NoteParser.computeHash(content);
+        const fileInfo = this.createFileInfo(relativePath, fullPath);
+        const parsed = parser_js_1.NoteParser.parse(content);
+        const contentMetadata = parser_js_1.NoteParser.parsedToContentMetadata(parsed, content);
+        this.db.upsertFile(fileInfo, hash);
+        this.db.upsertContentMetadata(relativePath, contentMetadata, hash);
+        // Resolve outlinks of this file immediately
+        for (const link of parsed.links) {
+            // Guard: skip links with undefined/non-string targets (e.g. from template placeholders)
+            if (!link.target || typeof link.target !== 'string')
+                continue;
+            const linkedFile = this.getFirstLinkpathDest(link.target, relativePath);
+            if (linkedFile) {
+                this.db.updateLinkTarget(relativePath, link.position.start.offset, linkedFile.path, null);
+            }
+        }
+    }
     findMarkdownFiles() {
         const files = [];
         const excludeDirs = ['.git', '.secondbrain', 'node_modules'];
@@ -83,60 +121,46 @@ class VaultManager {
             for (const entry of entries) {
                 const fullPath = (0, path_1.join)(dir, entry.name);
                 if (entry.isDirectory() && !excludeDirs.includes(entry.name)) {
-                    walk(fullPath);
+                    // Skip symlinked directories to avoid cycles and duplicate traversal
+                    if (!entry.isSymbolicLink()) {
+                        walk(fullPath);
+                    }
                 }
                 else if (entry.isFile() && (0, path_1.extname)(entry.name) === '.md') {
                     files.push(fullPath);
                 }
             }
         };
-        walk(this.config.vaultPath);
+        walk(this._config.vaultPath);
         return files;
     }
-    async createNoteFromFile(path, content, hash, links = []) {
-        const parsed = parser_js_1.NoteParser.parse(content);
-        const fullPath = (0, path_1.join)(this.config.vaultPath, path);
+    /**
+     * Create FileInfo from file path and stats.
+     * Separates file system information from content parsing.
+     */
+    createFileInfo(relativePath, fullPath) {
         const stats = (0, fs_1.statSync)(fullPath);
+        const ext = (0, path_1.extname)(relativePath) || '.md';
+        const name = (0, path_1.basename)(relativePath);
+        const basenameWithoutExt = (0, path_1.basename)(relativePath, ext) || (0, path_1.basename)(relativePath);
+        const parentDir = (0, path_1.dirname)(relativePath);
+        const parent = parentDir === '.' ? null : parentDir;
         return {
-            id: hash,
-            path,
-            title: parsed.title,
-            content: parsed.content,
-            frontmatter: parsed.frontmatter,
-            tags: parsed.tags,
-            links: links,
-            backlinks: [], // Will be computed by database
-            hash,
-            createdAt: stats.birthtime.toISOString(),
-            modifiedAt: stats.mtime.toISOString()
+            path: relativePath,
+            name,
+            basename: basenameWithoutExt,
+            extension: ext.replace(/^\./, ''), // Remove leading dot
+            parent,
+            stat: {
+                ctime: stats.birthtimeMs,
+                mtime: stats.mtimeMs,
+                size: stats.size
+            }
         };
     }
-    findNoteByTitleOrPath(titleOrPath) {
-        // Try exact path match first
-        const note = this.db.getNoteByPath(titleOrPath + '.md');
-        if (note)
-            return note;
-        // Try with different extensions or paths
-        const variations = [
-            titleOrPath + '.md',
-            titleOrPath,
-            titleOrPath.replace(/ /g, '-') + '.md',
-            titleOrPath.replace(/ /g, '_') + '.md'
-        ];
-        for (const variation of variations) {
-            const note = this.db.getNoteByPath(variation);
-            if (note)
-                return note;
-        }
-        // Search by title using SQL (case-insensitive)
-        const byTitle = this.db.getNoteByTitle(titleOrPath);
-        if (byTitle)
-            return byTitle;
-        return null;
-    }
     // Write note to file
     writeNote(path, content) {
-        const fullPath = (0, path_1.join)(this.config.vaultPath, path);
+        const fullPath = (0, path_1.join)(this._config.vaultPath, path);
         // Ensure directory exists
         const dir = (0, path_1.dirname)(fullPath);
         if (!(0, fs_1.existsSync)(dir)) {
@@ -145,7 +169,7 @@ class VaultManager {
         (0, fs_1.writeFileSync)(fullPath, content, 'utf-8');
     }
     readNote(path) {
-        const fullPath = (0, path_1.join)(this.config.vaultPath, path);
+        const fullPath = (0, path_1.join)(this._config.vaultPath, path);
         if (!(0, fs_1.existsSync)(fullPath)) {
             return null;
         }
@@ -157,37 +181,177 @@ class VaultManager {
         const month = String(date.getMonth() + 1).padStart(2, '0');
         const day = String(date.getDate()).padStart(2, '0');
         const dateStr = `${year}-${month}-${day}`;
-        return (0, path_1.join)(this.config.dailyNotesFolder, `${dateStr}.md`);
+        return (0, path_1.join)(this._config.dailyNotesFolder, `${dateStr}.md`);
     }
     // Get template path
     getTemplatePath(templateName) {
-        return (0, path_1.join)(this.config.templatesFolder, `${templateName}.md`);
-    }
-    // Database proxy methods
-    getNoteById(id) {
-        return this.db.getNoteById(id);
+        return (0, path_1.join)(this._config.templatesFolder, `${templateName}.md`);
     }
-    getNoteByPath(path) {
-        return this.db.getNoteByPath(path);
+    getStats() {
+        return this.db.getStats();
     }
-    searchNotes(query, tags, limit = 20) {
-        return this.db.searchNotes(query, tags, limit);
+    // New structure (files + content_metadata + links_with_positions)
+    getBacklinksByPath(filePath) {
+        return this.db.getBacklinksByPath(filePath);
     }
-    getBacklinks(noteId) {
-        return this.db.getBacklinks(noteId);
+    getOutlinksByPath(filePath) {
+        return this.db.getOutlinksByPath(filePath);
     }
-    getOrphans() {
-        return this.db.getOrphans();
+    getOrphanFiles() {
+        return this.db.getOrphanFiles();
     }
-    getStats() {
-        return this.db.getStats();
+    searchFiles(query, tags, limit = 20, pathPrefix, linksToPath, headingQuery, modifiedAfter, modifiedBefore) {
+        return this.db.searchFiles(query, tags, limit, pathPrefix, linksToPath, headingQuery, modifiedAfter, modifiedBefore);
     }
     getGraphData() {
         return this.db.getGraphData();
     }
-    // Database proxy methods
-    upsertNote(note) {
-        return this.db.upsertNote(note);
+    // Obsidian-style API methods
+    /**
+     * Get all markdown files in the vault (Obsidian-style API).
+     * Equivalent to Obsidian's Vault.getMarkdownFiles().
+     * @returns Array of FileInfo for every .md file in the vault
+     */
+    getMarkdownFiles() {
+        return this.db.getAllFiles();
+    }
+    /**
+     * Get FileInfo by path (Obsidian-style API).
+     * @param path Relative path from vault root
+     * @returns FileInfo or null if not found
+     */
+    getFileByPath(path) {
+        return this.db.getFileByPath(path);
+    }
+    /**
+     * Resolve path or basename to FileInfo using new structure only.
+     * Tries exact path, path + .md, then match by basename.
+     */
+    resolvePathOrBasename(pathOrBasename) {
+        let file = this.db.getFileByPath(pathOrBasename);
+        if (file)
+            return file;
+        if (!pathOrBasename.endsWith('.md')) {
+            file = this.db.getFileByPath(pathOrBasename + '.md');
+            if (file)
+                return file;
+        }
+        const base = pathOrBasename.replace(/\.md$/i, '');
+        return this.db.getFileByBasename(base);
+    }
+    /**
+     * Read file content by FileInfo (Obsidian-style API).
+     * Equivalent to Obsidian's Vault.read(file).
+     * @param file FileInfo object
+     * @returns File content or null if not found
+     */
+    readFile(file) {
+        return this.readNote(file.path);
+    }
+    /**
+     * Get backlinks for a file by FileInfo (Obsidian-style API).
+     * Equivalent to Obsidian's MetadataCache.getBacklinksForFile(file).
+     * @param file FileInfo object
+     * @returns Array of FileInfo that link to this file
+     */
+    getBacklinksForFile(file) {
+        return this.getBacklinksByPath(file.path);
+    }
+    /**
+     * Get ContentMetadata for a FileInfo (Obsidian-style API).
+     * Equivalent to Obsidian's MetadataCache.getFileCache(file).
+     * @param file FileInfo object
+     * @returns ContentMetadata or null if not found
+     */
+    getFileCache(file) {
+        return this.db.getContentMetadata(file.path);
+    }
+    /**
+     * Resolve a linkpath to a FileInfo (Obsidian-style API).
+     * Equivalent to Obsidian's MetadataCache.getFirstLinkpathDest(linkpath, sourcePath).
+     * Resolves linkpaths like "note-name", "folder/note-name", "note-name#heading", etc.
+     * @param linkpath Link path (may include heading/block reference after #)
+     * @param sourcePath Path of the source file (for relative path resolution)
+     * @returns FileInfo or null if not found
+     */
+    getFirstLinkpathDest(linkpath, sourcePath) {
+        // Guard: reject undefined, null, or non-string values (e.g. from template placeholders in frontmatter)
+        if (!linkpath || typeof linkpath !== 'string')
+            return null;
+        // Strip heading/block reference (everything after #)
+        const filePart = linkpath.split('#')[0].trim();
+        if (!filePart)
+            return null;
+        // Try exact path match first
+        let file = this.db.getFileByPath(filePart);
+        if (file)
+            return file;
+        // Try with .md extension
+        file = this.db.getFileByPath(filePart + '.md');
+        if (file)
+            return file;
+        // Try relative to source file's directory
+        if (sourcePath) {
+            const sourceDir = (0, path_1.dirname)(sourcePath);
+            const relativePath = sourceDir === '.' ? filePart : (0, path_1.join)(sourceDir, filePart);
+            file = this.db.getFileByPath(relativePath);
+            if (file)
+                return file;
+            // Try relative path with .md extension
+            file = this.db.getFileByPath(relativePath + '.md');
+            if (file)
+                return file;
+        }
+        // Try path variations (spaces to dashes/underscores)
+        const variations = [
+            filePart.replace(/ /g, '-') + '.md',
+            filePart.replace(/ /g, '_') + '.md',
+            filePart.replace(/ /g, '-'),
+            filePart.replace(/ /g, '_')
+        ];
+        for (const variation of variations) {
+            file = this.db.getFileByPath(variation);
+            if (file)
+                return file;
+        }
+        // Try finding by basename (filename without extension)
+        // This matches Obsidian's behavior of finding files by title
+        const basenameToMatch = filePart.replace(/\.md$/, '');
+        return this.db.getFileByBasename(basenameToMatch);
+    }
+    /**
+     * Resolve a linkpath to a file and position (line, col) for editor navigation.
+     * Supports note, note#heading, note#^block-id, and note#heading#^block-id.
+     * @returns { path, line, col } (1-based) or null if file not found
+     */
+    resolveLinkToPosition(linkpath, sourcePath) {
+        const parts = linkpath.split('#').map(p => p.trim());
+        const filePart = parts[0];
+        if (!filePart)
+            return null;
+        const file = this.getFirstLinkpathDest(filePart, sourcePath);
+        if (!file)
+            return null;
+        const fragments = parts.slice(1);
+        if (fragments.length === 0) {
+            return { path: file.path, line: 1, col: 1 };
+        }
+        const last = fragments[fragments.length - 1];
+        const blockId = last.startsWith('^') ? last.slice(1) : null;
+        const headingFragment = blockId && fragments.length > 1
+            ? fragments.slice(0, -1).join(' ')
+            : fragments.join(' ');
+        if (blockId) {
+            const pos = this.db.getBlockPosition(file.path, blockId);
+            if (pos)
+                return { path: file.path, ...pos };
+        }
+        if (headingFragment) {
+            const pos = this.db.getHeadingPosition(file.path, headingFragment);
+            if (pos)
+                return { path: file.path, ...pos };
+        }
+        return { path: file.path, line: 1, col: 1 };
     }
 }
 exports.VaultManager = VaultManager;

package/dist/utils/vault.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@novis10813/secondbrain-cli",
-  "version": "0.1.0",
+  "version": "0.1.2",
   "description": "A CLI tool for LLM agents to interact with Obsidian vaults",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
@@ -17,8 +17,11 @@
     "build": "tsc",
     "dev": "bun run src/index.ts",
     "test": "bun test",
+    "test:perf": "bun test tests/perf",
+    "coverage": "bun test --coverage",
     "lint": "tsc --noEmit",
-    "prepare": "npm run build"
+    "prepare": "npm run build",
+    "check": "tsc --noEmit"
   },
   "keywords": [
     "obsidian",
@@ -32,7 +35,7 @@
   "author": "novis10813",
   "repository": {
     "type": "git",
-    "url": "https://github.com/novis10813/secondbrain-cli.git"
+    "url": "git+https://github.com/novis10813/secondbrain-cli.git"
   },
   "bugs": {
     "url": "https://github.com/novis10813/secondbrain-cli/issues"
@@ -40,10 +43,13 @@
   "homepage": "https://github.com/novis10813/secondbrain-cli#readme",
   "license": "MIT",
   "dependencies": {
+    "better-sqlite3": "^11.6.0",
     "commander": "^12.0.0",
+    "moment": "^2.30.1",
     "yaml": "^2.3.4"
   },
   "devDependencies": {
+    "@types/better-sqlite3": "^7.6.11",
     "@types/node": "^20.11.0",
     "typescript": "^5.3.3"
   },