@noodleseed/one 0.115.0 → 0.117.0

package/dist/agent-product-skill-state.js.map

@@ -1 +1 @@
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package/dist/agent-product-skill.d.ts

@@ -1,20 +1,26 @@
 import { type AgentTarget, type RenderedProductSkillBundleV1 } from '@noodle-borg/agent-kit';
 import type { AppPackageArtifactV1 } from '@noodle-borg/compiler';
 export type AgentProductSkillCode = 'agent_skill_invalid_state' | 'agent_skill_modified' | 'agent_skill_stale';
+export interface AgentProductSkillIssue {
+    readonly code: AgentProductSkillCode;
+    readonly message: string;
+    readonly recovery?: 'replace_modified_app_skill';
+    readonly target?: AgentTarget;
+}
 export interface ProductSkillFileAction {
     readonly path: string;
-    readonly action: 'created' | 'updated' | 'unchanged' | 'skipped';
+    readonly action: 'created' | 'updated' | 'unchanged' | 'removed' | 'skipped';
     readonly reason?: string;
 }
 export interface ProductSkillTargetReport {
     readonly target: AgentTarget;
-    readonly status: 'created' | 'updated' | 'unchanged' | 'modified' | 'stale';
+    readonly status: 'created' | 'updated' | 'unchanged' | 'modified' | 'stale' | 'removed';
     readonly statePath: string;
+    readonly applied: boolean;
+    readonly requiresRegeneration: boolean;
+    readonly stateAction: 'created' | 'updated' | 'unchanged' | 'migrated' | 'removed';
     readonly files: readonly ProductSkillFileAction[];
-    readonly issue?: {
-        readonly code: AgentProductSkillCode;
-        readonly message: string;
-    };
+    readonly issue?: AgentProductSkillIssue;
 }
 export interface ProductSkillSetupReport {
     readonly ok: boolean;
@@ -27,11 +33,7 @@ export interface ProductSkillSetupReport {
     readonly rendererVersion?: string;
     readonly bundleSha256?: string;
     readonly targets: readonly ProductSkillTargetReport[];
-    readonly issues: readonly {
-        readonly code: AgentProductSkillCode;
-        readonly message: string;
-        readonly target?: AgentTarget;
-    }[];
+    readonly issues: readonly AgentProductSkillIssue[];
 }
 export type ProductSkillCompilation = {
     readonly kind: 'absent';
@@ -52,6 +54,8 @@ export declare function setupProjectProductSkill(input: {
     readonly project: string;
     readonly targets: readonly AgentTarget[];
     readonly write: boolean;
+    readonly regenerateAppSkill?: boolean;
+    readonly replaceModifiedAppSkill?: boolean;
     readonly compilation: ProductSkillCompilation;
 }): ProductSkillSetupReport | undefined;
 //# sourceMappingURL=agent-product-skill.d.ts.map

package/dist/agent-product-skill.d.ts.map

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package/dist/agent-product-skill.js

@@ -1,8 +1,5 @@
-import { existsSync, readFileSync } from 'node:fs';
-import { join } from 'node:path';
 import { renderProductSkillBundle, } from '@noodle-borg/agent-kit';
-import { assertProductSkillPathsSafe, createProductSkillState, inspectProductSkillStateFiles, productSkillStatePath, readProductSkillState, unexpectedProductSkillPaths, writeProductSkillState, } from './agent-product-skill-state.js';
-import { atomicWriteProjectFile } from './agent-skills-state.js';
+import { orphanedProductSkillSetupReport, reconcileProductSkillTarget, } from './agent-product-skill-reconcile.js';
 import { compileLocalInput } from './local-compile.js';
 import { resolveLocalEntrypoint } from './project.js';
 /** Compile the local TypeScript project without auth or network, then invoke the pure Agent Kit renderer. */
@@ -37,7 +34,7 @@ export async function compileProjectProductSkill(project) {
 }
 export function setupProjectProductSkill(input) {
     if (input.compilation.kind === 'absent' || input.compilation.kind === 'unguided') {
-        return orphanedSetupReport(input.project, input.targets);
+        return orphanedProductSkillSetupReport(input);
     }
     if (input.compilation.kind === 'error') {
         return {
@@ -47,10 +44,12 @@ export function setupProjectProductSkill(input) {
         };
     }
     const { artifact, bundle, skillSlug } = input.compilation;
-    const targets = input.targets.map((target) => reconcileTarget({
+    const targets = input.targets.map((target) => reconcileProductSkillTarget({
         project: input.project,
         target,
         write: input.write,
+        regenerateAppSkill: input.regenerateAppSkill === true,
+        replaceModifiedAppSkill: input.replaceModifiedAppSkill === true,
         artifact,
         bundle,
         skillSlug,
@@ -67,175 +66,4 @@ export function setupProjectProductSkill(input) {
         issues,
     };
 }
-function reconcileTarget(input) {
-    const files = targetFiles(input.bundle, input.target);
-    const statePath = productSkillStatePath(input.target);
-    try {
-        assertProductSkillPathsSafe({
-            project: input.project,
-            target: input.target,
-            paths: files.map((file) => file.path),
-        });
-        const read = readProductSkillState(input.project, input.target);
-        if (read.kind === 'invalid') {
-            return invalidTarget(input.target, statePath, files, 'ownership record is malformed');
-        }
-        if (read.kind === 'absent')
-            return adoptOrCreateTarget(input, files, statePath);
-        const state = read.state;
-        assertProductSkillPathsSafe({
-            project: input.project,
-            target: input.target,
-            paths: state.files.map((file) => file.path),
-        });
-        const extras = unexpectedProductSkillPaths({
-            project: input.project,
-            target: input.target,
-            skillSlug: state.app.skillSlug,
-            expectedPaths: state.files.map((file) => file.path),
-        });
-        if (extras.length > 0) {
-            return blockedTarget(input.target, statePath, files, `unowned file collision: ${extras[0]}`);
-        }
-        const disk = inspectProductSkillStateFiles(input.project, state);
-        if (disk.modified) {
-            return blockedTarget(input.target, statePath, files, 'generated files differ from their recorded hashes');
-        }
-        if (state.app.name !== input.artifact.app.name ||
-            state.app.skillSlug !== input.skillSlug ||
-            !samePaths(state.files, files)) {
-            return staleTarget(input.target, statePath, files, 'the installed skill belongs to a different app or renderer layout');
-        }
-        const actions = files.map((file) => {
-            const path = join(input.project, file.path);
-            if (!existsSync(path))
-                return { path: file.path, action: 'created' };
-            return readFileSync(path, 'utf8') === file.content
-                ? { path: file.path, action: 'unchanged' }
-                : { path: file.path, action: 'updated' };
-        });
-        const nextState = createProductSkillState({
-            target: input.target,
-            artifact: input.artifact,
-            bundle: input.bundle,
-            skillSlug: input.skillSlug,
-            files,
-        });
-        const changed = actions.some((action) => action.action !== 'unchanged') || !sameState(state, nextState);
-        if (input.write && changed)
-            writeTarget(input.project, files, actions, nextState);
-        return {
-            target: input.target,
-            status: changed ? 'updated' : 'unchanged',
-            statePath,
-            files: actions,
-        };
-    }
-    catch (cause) {
-        return invalidTarget(input.target, statePath, files, cause.message);
-    }
-}
-function adoptOrCreateTarget(input, files, statePath) {
-    const extras = unexpectedProductSkillPaths({
-        project: input.project,
-        target: input.target,
-        skillSlug: input.skillSlug,
-        expectedPaths: files.map((file) => file.path),
-    });
-    const actions = files.map((file) => {
-        const path = join(input.project, file.path);
-        if (!existsSync(path))
-            return { path: file.path, action: 'created' };
-        return readFileSync(path, 'utf8') === file.content
-            ? { path: file.path, action: 'unchanged' }
-            : { path: file.path, action: 'skipped', reason: 'unowned file collision' };
-    });
-    if (extras.length > 0 || actions.some((action) => action.action === 'skipped')) {
-        return blockedTarget(input.target, statePath, files, `unowned file collision${extras[0] ? `: ${extras[0]}` : ''}`);
-    }
-    const state = createProductSkillState({
-        target: input.target,
-        artifact: input.artifact,
-        bundle: input.bundle,
-        skillSlug: input.skillSlug,
-        files,
-    });
-    if (input.write)
-        writeTarget(input.project, files, actions, state);
-    return {
-        target: input.target,
-        status: actions.some((action) => action.action === 'created') ? 'created' : 'unchanged',
-        statePath,
-        files: actions,
-    };
-}
-function writeTarget(project, files, actions, state) {
-    for (const file of files) {
-        const action = actions.find((candidate) => candidate.path === file.path)?.action;
-        if (action === 'created' || action === 'updated') {
-            atomicWriteProjectFile(join(project, file.path), file.content);
-        }
-    }
-    writeProductSkillState(project, state);
-}
-function orphanedSetupReport(project, targets) {
-    const installed = [];
-    for (const target of targets) {
-        try {
-            const state = readProductSkillState(project, target);
-            if (state.kind === 'valid')
-                installed.push({ target, state: state.state });
-            else if (state.kind === 'invalid')
-                installed.push({ target, invalid: true });
-        }
-        catch {
-            installed.push({ target, invalid: true });
-        }
-    }
-    if (installed.length === 0)
-        return undefined;
-    const first = installed.find((entry) => entry.state !== undefined)?.state;
-    const targetsReport = installed.map((entry) => entry.invalid
-        ? invalidTarget(entry.target, productSkillStatePath(entry.target), [], 'ownership record is malformed or unsafe')
-        : staleTarget(entry.target, productSkillStatePath(entry.target), [], 'the current TypeScript app no longer compiles an agent guide'));
-    return {
-        ok: false,
-        ...(first ? { app: first.app } : {}),
-        targets: targetsReport,
-        issues: targetsReport.flatMap((target) => target.issue ? [{ ...target.issue, target: target.target }] : []),
-    };
-}
-function targetFiles(bundle, target) {
-    const files = bundle.files.filter((file) => file.target === target);
-    if (files.length !== 2)
-        throw new Error(`App Package renderer did not return two ${target} files`);
-    return files;
-}
-function samePaths(left, right) {
-    return (left.length === right.length && left.every((file, index) => file.path === right[index]?.path));
-}
-function sameState(left, right) {
-    return JSON.stringify(left) === JSON.stringify(right);
-}
-function blockedTarget(target, statePath, files, message, code = 'agent_skill_modified') {
-    return {
-        target,
-        status: 'modified',
-        statePath,
-        files: files.map((file) => ({ path: file.path, action: 'skipped', reason: message })),
-        issue: { code, message },
-    };
-}
-function invalidTarget(target, statePath, files, message) {
-    return blockedTarget(target, statePath, files, message, 'agent_skill_invalid_state');
-}
-function staleTarget(target, statePath, files, message) {
-    return {
-        target,
-        status: 'stale',
-        statePath,
-        files: files.map((file) => ({ path: file.path, action: 'skipped', reason: message })),
-        issue: { code: 'agent_skill_stale', message },
-    };
-}
 //# sourceMappingURL=agent-product-skill.js.map

package/dist/agent-product-skill.js.map

@@ -1 +1 @@
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+{"version":3,"file":"agent-product-skill.js","sourceRoot":"","sources":["../src/agent-product-skill.ts"],"names":[],"mappings":"AAAA,OAAO,EAGL,wBAAwB,GACzB,MAAM,wBAAwB,CAAC;AAEhC,OAAO,EACL,+BAA+B,EAC/B,2BAA2B,GAC5B,MAAM,oCAAoC,CAAC;AAC5C,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AACvD,OAAO,EAAE,sBAAsB,EAAE,MAAM,cAAc,CAAC;AAqDtD,6GAA6G;AAC7G,MAAM,CAAC,KAAK,UAAU,0BAA0B,CAC9C,OAAe;IAEf,MAAM,UAAU,GAAG,sBAAsB,CAAC,OAAO,CAAC,CAAC;IACnD,IAAI,UAAU,KAAK,SAAS;QAAE,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,CAAC;IACxD,MAAM,QAAQ,GAAG,MAAM,iBAAiB,CAAC,EAAE,YAAY,EAAE,UAAU,EAAE,CAAC,CAAC;IACvE,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;QACjB,OAAO;YACL,IAAI,EAAE,OAAO;YACb,OAAO,EAAE,uCAAuC,QAAQ,CAAC,KAAK,8BAA8B;SAC7F,CAAC;IACJ,CAAC;IACD,IAAI,QAAQ,CAAC,QAAQ,CAAC,UAAU,KAAK,SAAS;QAAE,OAAO,EAAE,IAAI,EAAE,UAAU,EAAE,CAAC;IAC5E,IAAI,CAAC;QACH,MAAM,QAAQ,GAAG,QAAQ,CAAC,QAAQ,CAAC,UAAU,CAAC;QAC9C,MAAM,MAAM,GAAG,wBAAwB,CAAC,QAAQ,CAAC,CAAC;QAClD,MAAM,SAAS,GAAG,MAAM,CAAC,KAAK,CAAC,IAAI,CACjC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,KAAK,OAAO,IAAI,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC,CACrE,CAAC;QACF,MAAM,SAAS,GAAG,SAAS,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QACpD,IAAI,SAAS,KAAK,SAAS;YAAE,MAAM,IAAI,KAAK,CAAC,0CAA0C,CAAC,CAAC;QACzF,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC;IACxD,CAAC;IAAC,MAAM,CAAC;QACP,OAAO;YACL,IAAI,EAAE,OAAO;YACb,OAAO,EAAE,0EAA0E;SACpF,CAAC;IACJ,CAAC;AACH,CAAC;AAED,MAAM,UAAU,wBAAwB,CAAC,KAOxC;IACC,IAAI,KAAK,CAAC,WAAW,CAAC,IAAI,KAAK,QAAQ,IAAI,KAAK,CAAC,WAAW,CAAC,IAAI,KAAK,UAAU,EAAE,CAAC;QACjF,OAAO,+BAA+B,CAAC,KAAK,CAAC,CAAC;IAChD,CAAC;IACD,IAAI,KAAK,CAAC,WAAW,CAAC,IAAI,KAAK,OAAO,EAAE,CAAC;QACvC,OAAO;YACL,EAAE,EAAE,KAAK;YACT,OAAO,EAAE,EAAE;YACX,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,KAAK,CAAC,WAAW,CAAC,OAAO,EAAE,CAAC;SAC5E,CAAC;IACJ,CAAC;IACD,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,SAAS,EAAE,GAAG,KAAK,CAAC,WAAW,CAAC;IAC1D,MAAM,OAAO,GAAG,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAC3C,2BAA2B,CAAC;QAC1B,OAAO,EAAE,KAAK,CAAC,OAAO;QACtB,MAAM;QACN,KAAK,EAAE,KAAK,CAAC,KAAK;QAClB,kBAAkB,EAAE,KAAK,CAAC,kBAAkB,KAAK,IAAI;QACrD,uBAAuB,EAAE,KAAK,CAAC,uBAAuB,KAAK,IAAI;QAC/D,QAAQ;QACR,MAAM;QACN,SAAS;KACV,CAAC,CACH,CAAC;IACF,MAAM,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAAC,MAAM,EAAE,EAAE,CACxC,MAAM,CAAC,KAAK,KAAK,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,EAAE,GAAG,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,CAAC,CAC/E,CAAC;IACF,OAAO;QACL,EAAE,EAAE,MAAM,CAAC,MAAM,KAAK,CAAC;QACvB,GAAG,EAAE,EAAE,IAAI,EAAE,QAAQ,CAAC,GAAG,CAAC,IAAI,EAAE,SAAS,EAAE;QAC3C,oBAAoB,EAAE,QAAQ,CAAC,UAAU,CAAC,oBAAoB;QAC9D,gBAAgB,EAAE,QAAQ,CAAC,UAAU,CAAC,gBAAgB;QACtD,eAAe,EAAE,MAAM,CAAC,eAAe;QACvC,YAAY,EAAE,MAAM,CAAC,YAAY;QACjC,OAAO;QACP,MAAM;KACP,CAAC;AACJ,CAAC"}

package/dist/agents-doctor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"agents-doctor.d.ts","sourceRoot":"","sources":["../src/agents-doctor.ts"],"names":[],"mappings":"AAEA,OAAO,EAEL,KAAK,WAAW,EAIjB,MAAM,wBAAwB,CAAC;AAQhC,OAAO,EAAE,KAAK,qBAAqB,EAA8B,MAAM,0BAA0B,CAAC;AAGlG,OAAO,EAAE,KAAK,SAAS,EAAiC,MAAM,sBAAsB,CAAC;AACrF,OAAO,EAAE,KAAK,cAAc,EAAa,MAAM,aAAa,CAAC;AAG7D,MAAM,WAAW,gBAAgB;IAC/B,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,IAAI,CAAC,EAAE,qBAAqB,CAAC;CACvC;AAWD,wBAAgB,sBAAsB,CAAC,MAAM,EAAE,SAAS,gBAAgB,EAAE,GAAG,SAAS,CAOrF;AAED,wBAAsB,cAAc,CAClC,IAAI,EAAE;IACJ,QAAQ,CAAC,MAAM,EAAE,SAAS,WAAW,EAAE,CAAC;IACxC,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;CACxB,EACD,GAAG,EAAE,MAAM,CAAC,UAAU,EACtB,cAAc,CAAC,EAAE,cAAc,GAC9B,OAAO,CAAC,MAAM,CAAC,CAiIjB"}
+{"version":3,"file":"agents-doctor.d.ts","sourceRoot":"","sources":["../src/agents-doctor.ts"],"names":[],"mappings":"AAEA,OAAO,EAEL,KAAK,WAAW,EAIjB,MAAM,wBAAwB,CAAC;AAQhC,OAAO,EAAE,KAAK,qBAAqB,EAA8B,MAAM,0BAA0B,CAAC;AAGlG,OAAO,EAAE,KAAK,SAAS,EAAiC,MAAM,sBAAsB,CAAC;AACrF,OAAO,EAAE,KAAK,cAAc,EAAa,MAAM,aAAa,CAAC;AAG7D,MAAM,WAAW,gBAAgB;IAC/B,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,KAAK,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,IAAI,CAAC,EAAE,qBAAqB,CAAC;CACvC;AAWD,wBAAgB,sBAAsB,CAAC,MAAM,EAAE,SAAS,gBAAgB,EAAE,GAAG,SAAS,CAUrF;AAED,wBAAsB,cAAc,CAClC,IAAI,EAAE;IACJ,QAAQ,CAAC,MAAM,EAAE,SAAS,WAAW,EAAE,CAAC;IACxC,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,IAAI,EAAE,OAAO,CAAC;CACxB,EACD,GAAG,EAAE,MAAM,CAAC,UAAU,EACtB,cAAc,CAAC,EAAE,cAAc,GAC9B,OAAO,CAAC,MAAM,CAAC,CAyHjB"}

package/dist/agents-doctor.js

@@ -9,11 +9,14 @@ import { printJsonFailure, printJsonOk } from './commands/output.js';
 import { configDir } from './config.js';
 import { fetchLatestAgentKitVersion, loadCachedAgentKit, skillStaleness } from './skills-update.js';
 export function staleAgentContextError(checks) {
+    const nextCommands = agentDoctorNextCommands(checks);
     return {
         code: 'agent_context_stale',
         message: 'agent context is stale or missing',
-        next: 'noodle agents setup --write',
-        detail: { checks },
+        next: checks.some((check) => check.code !== undefined)
+            ? 'noodle agents setup'
+            : 'noodle agents setup --write',
+        detail: { checks, ...(nextCommands.length > 0 ? { nextCommands } : {}) },
     };
 }
 export async function runAgentDoctor(args, env, configLocation) {
@@ -112,6 +115,7 @@ export async function runAgentDoctor(args, env, configLocation) {
         }),
     ];
     const ok = checks.every((check) => check.level !== 'FAIL');
+    const nextCommands = agentDoctorNextCommands(checks);
     if (args.json) {
         if (ok) {
             const stale = checks.some((check) => check.level === 'WARN');
@@ -119,16 +123,7 @@ export async function runAgentDoctor(args, env, configLocation) {
                 checks,
                 restartRequired: false,
                 stale,
-                ...(stale
-                    ? {
-                        nextCommands: [
-                            {
-                                command: 'noodle agents setup --write',
-                                reason: 'refresh stale or missing generated agent context',
-                            },
-                        ],
-                    }
-                    : {}),
+                ...(nextCommands.length > 0 ? { nextCommands } : {}),
             });
             return 0;
         }
@@ -136,9 +131,26 @@ export async function runAgentDoctor(args, env, configLocation) {
     }
     for (const check of checks)
         console.log(`${check.level} ${check.name}: ${check.message}`);
-    console.log('Next: noodle agents setup --write');
+    for (const next of nextCommands)
+        console.log(`Next: ${next.command} — ${next.reason}`);
     return ok ? 0 : 1;
 }
+function agentDoctorNextCommands(checks) {
+    const commands = [];
+    if (checks.some((check) => check.level !== 'PASS' && check.code !== undefined)) {
+        commands.push({
+            command: 'noodle agents setup',
+            reason: 'preview app product-skill recovery without writing',
+        });
+    }
+    if (checks.some((check) => check.level !== 'PASS' && check.code === undefined)) {
+        commands.push({
+            command: 'noodle agents setup --write',
+            reason: 'refresh stale or missing Noodle-owned agent context',
+        });
+    }
+    return commands;
+}
 function inspectWorkflowFile(input) {
     const path = join(input.project, input.file.path);
     if (!existsSync(path)) {

package/dist/agents-doctor.js.map

@@ -1 +1 @@
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package/dist/agents.d.ts

@@ -10,13 +10,15 @@ interface AgentArgs {
     readonly project: string;
     readonly write: boolean;
     readonly force: boolean;
+    readonly regenerateAppSkill: boolean;
+    readonly replaceModifiedAppSkill: boolean;
     readonly json: boolean;
     readonly refresh: boolean;
 }
 type ResolvedAgentArgs = AgentArgs & {
     readonly agents: readonly AgentTarget[];
 };
-export type AgentSetupInput = Omit<ResolvedAgentArgs, 'action' | 'refresh'> & {
+export type AgentSetupInput = Omit<ResolvedAgentArgs, 'action' | 'refresh' | 'regenerateAppSkill' | 'replaceModifiedAppSkill'> & {
     readonly skillsOverride?: ResolvedSkillsSnapshot;
     readonly registry?: SkillRegistry;
 };

package/dist/agents.d.ts.map

@@ -1 +1 @@
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package/dist/agents.js

@@ -3,6 +3,7 @@ import { dirname, join, resolve } from 'node:path';
 import { AGENT_KIT_VERSION, parseAgentTargets, reconcileManagedBlock, renderAgentFiles, } from '@noodle-borg/agent-kit';
 import { commandOnPath, displayAgentName, isSkillsUpdateContext, pluginRequiredAgentKitVersion, resolveAgentProjectMetadata, } from './agent-command-context.js';
 import { compileProjectProductSkill, setupProjectProductSkill, } from './agent-product-skill.js';
+import { nextAgentSetupCommand, productSkillRecoveryNext } from './agent-product-skill-output.js';
 import { assertManagedSkillFilesSafe, reconcileManagedSkillFiles } from './agent-skills-state.js';
 import { runAgentDoctor } from './agents-doctor.js';
 import { EXIT, printJsonFailure, printJsonOk } from './commands/output.js';
@@ -166,6 +167,8 @@ async function runAgentSetup(args, env, configLocation) {
         project: args.project,
         targets: args.agents,
         write: args.write,
+        regenerateAppSkill: args.regenerateAppSkill,
+        replaceModifiedAppSkill: args.replaceModifiedAppSkill,
         compilation: await compileProjectProductSkill(args.project),
     });
     const combined = productSkill === undefined
@@ -180,7 +183,7 @@ async function runAgentSetup(args, env, configLocation) {
         return printJsonFailure({
             code: issue?.code ?? 'agent_skill_stale',
             message: issue?.message ?? 'app product skill could not be installed safely',
-            next: 'Review noodle agents setup, then rerun with --write when safe.',
+            next: productSkillRecoveryNext(issue),
             detail: { report: combined },
         }, 1);
     }
@@ -205,7 +208,8 @@ async function runAgentSetup(args, env, configLocation) {
             ? 'App product skill: unavailable'
             : `App product skill: ${app.name} (${app.skillSlug})`);
         for (const target of combined.productSkill.targets) {
-            console.log(`  ${displayAgentName(target.target)}: ${target.status}`);
+            const pending = target.requiresRegeneration && !target.applied ? ' (preview only)' : '';
+            console.log(`  ${displayAgentName(target.target)}: ${target.status}; state ${target.stateAction}${pending}`);
             for (const file of target.files) {
                 const reason = file.reason === undefined ? '' : ` (${file.reason})`;
                 console.log(`    ${file.action} ${file.path}${reason}`);
@@ -215,8 +219,9 @@ async function runAgentSetup(args, env, configLocation) {
             console.log(`  ${issue.code}: ${issue.message}`);
         }
     }
-    if (!args.write)
-        console.log('Next: noodle agents setup --write');
+    const next = nextAgentSetupCommand(args, combined.productSkill);
+    if (next !== undefined)
+        console.log(`Next: ${next}`);
     for (const hint of combined.restartHints)
         console.log(`Hint: ${hint}`);
     return combined.ok ? 0 : 1;
@@ -257,6 +262,8 @@ function parseAgentArgs(rest) {
     let project = process.cwd();
     let write = false;
     let force = false;
+    let regenerateAppSkill = false;
+    let replaceModifiedAppSkill = false;
     const json = rest.includes('--json');
     let refresh = false;
     for (let i = 0; i < tail.length; i++) {
@@ -288,11 +295,41 @@ function parseAgentArgs(rest) {
         else if (arg === '--force') {
             force = true;
         }
+        else if (arg === '--regenerate-app-skill') {
+            regenerateAppSkill = true;
+        }
+        else if (arg === '--replace-modified-app-skill') {
+            replaceModifiedAppSkill = true;
+        }
         else if (arg === '--refresh') {
             refresh = true;
         }
     }
-    return { action, agents, project, write, force, json, refresh };
+    if (replaceModifiedAppSkill && !regenerateAppSkill) {
+        if (json) {
+            printJsonFailure({
+                code: 'invalid_flag_combination',
+                message: '--replace-modified-app-skill requires --regenerate-app-skill',
+                fix: 'Preview explicit app-skill regeneration before replacing previously owned bytes.',
+                next: 'noodle agents setup --regenerate-app-skill --replace-modified-app-skill --json',
+            }, EXIT.USAGE);
+        }
+        else {
+            console.error('--replace-modified-app-skill requires --regenerate-app-skill');
+        }
+        return undefined;
+    }
+    return {
+        action,
+        agents,
+        project,
+        write,
+        force,
+        regenerateAppSkill,
+        replaceModifiedAppSkill,
+        json,
+        refresh,
+    };
 }
 function parseClientArg(value) {
     return parseAgentTargets(value);