@noir-ai/cli 1.3.0-beta.2 → 1.3.0-beta.4

package/dist/bin.js

@@ -2,7 +2,7 @@
 import {
   doctor,
   serve
-} from "./chunk-J5HAAQI4.js";
+} from "./chunk-3QMQXBII.js";
 import {
   init
 } from "./chunk-J2Y3BOVK.js";

package/dist/{chunk-J5HAAQI4.js → chunk-3QMQXBII.js}

@@ -317,7 +317,16 @@ function checkHostArtifacts(checks, root, project) {
   return { active: host, expected, missing };
 }
 function checkNestedNoir(checks, root) {
-  const candidates = [".noir/.noir", ".noir/CLAUDE.md", ".noir/.mcp.json", ".noir/.claude"];
+  const candidates = [
+    ".noir/.noir",
+    ".noir/CLAUDE.md",
+    ".noir/.mcp.json",
+    ".noir/.claude",
+    ".noir/.gitignore",
+    ".noir/.dockerignore",
+    ".noir/.npmignore",
+    ".noir/.prettierignore"
+  ];
   const found = candidates.filter((rel) => existsSync(join(root, rel)));
   const detected = found.length > 0;
   checks.push({
@@ -622,4 +631,4 @@ export {
   doctor,
   serve
 };
-//# sourceMappingURL=chunk-J5HAAQI4.js.map
+//# sourceMappingURL=chunk-3QMQXBII.js.map

package/dist/chunk-3QMQXBII.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/commands/doctor.ts","../src/serve.ts"],"sourcesContent":["// S9 t6 — `noir doctor`.\n//\n// Environment + project health. Runs a fixed set of checks and renders a\n// results table (human, stderr) or the versioned `{ok,data}` envelope (--json,\n// stdout). Exit 1 if any CRITICAL (fail) check is unhealthy, else 0.\n//\n// Severity model (S9 spec F8 / t6):\n//   - ok   — healthy.\n//   - warn — degraded but usable (daemon down, onnx missing, provider key\n//            missing, project not initialized). NEVER triggers exit 1.\n//   - fail — CRITICAL: the product is broken on this host. Only `config` (parse\n//            error), `native deps` (better-sqlite3 / sqlite-vec will not load),\n//            and `store` (open fails) can fail. Exit 1 if any fail.\n//\n// Honesty rules: provider status uses `resolveModelConfig` — a PURE projection\n// of the user's config + env-var NAME presence; it makes NO live call (blueprint\n// D5/DS-6). Native-dep probes are best-effort try/catch (the store's native\n// binaries are probed via `vecAvailability`, the single cross-package surface;\n// onnxruntime-node is the context engine's own dep and is probed separately).\n//\n// Cold-start (NF6): the @noir-ai/store import (which loads better-sqlite3) is\n// DYNAMIC, inside the action, so merely running `noir status` / `noir --help`\n// never pays the native-bindings cost. @noir-ai/model is imported eagerly — its\n// provider self-registration is light (SDKs load lazily inside `complete()`).\n//\n// Stream discipline (S9 DS-4): `--json` writes `{ok:true, data:{checks,summary}}`\n// to stdout (the only stdout write). Doctor always emits `ok:true` because the\n// COMMAND succeeded in producing a diagnosis; the system-health pass/fail is\n// signaled by the EXIT CODE (0 healthy / 1 critical failure) — the same shape\n// `npm audit --json` uses (valid JSON out, non-zero exit when issues found).\n\nimport { spawnSync } from 'node:child_process';\nimport { existsSync, readdirSync, readFileSync } from 'node:fs';\nimport { dirname, join, relative } from 'node:path';\nimport { fileURLToPath } from 'node:url';\nimport { type HostId, resolveAdapter } from '@noir-ai/adapters';\nimport { loadProjectInfo, NOIR_VERSION, type ProjectInfo, paths } from '@noir-ai/core';\nimport { CURRENT_SCAFFOLD_VERSION, readScaffoldVersion } from '@noir-ai/create';\nimport { pidAlive, readDaemonRecord } from '@noir-ai/daemon';\nimport { resolveModelConfig } from '@noir-ai/model';\nimport {\n  type CliOptions,\n  EXIT,\n  error as err,\n  log,\n  NoirCliError,\n  success,\n  table,\n  warn,\n} from '../output.js';\n\n/** Options accepted by `doctor`: the global flags + the opt-in `--dedup`. */\nexport interface DoctorOptions extends CliOptions {\n  /** `--dedup`: scan host-context + `.noir/` docs for semantic near-duplicates.\n   *  Opt-in (loads the local embedder) so a default `noir doctor` stays fast. */\n  dedup?: boolean;\n}\n\ntype Severity = 'ok' | 'warn' | 'fail';\n\n/** One row of the doctor report (table cell + `--json` element). */\nexport interface CheckResult {\n  name: string;\n  status: Severity;\n  detail: string;\n}\n\n/** The `data` payload of `noir doctor --json`. */\nexport interface DoctorPayload {\n  noir: string;\n  checks: CheckResult[];\n  summary: { ok: number; warn: number; fail: number };\n  /** Scaffold-version drift (slice S). `onDisk` is null when the stamp is\n   *  absent (uninitialized or pre-Slice-S project); `drift` is true only when\n   *  a stamp is present AND differs from the engine's current version. */\n  scaffold: { onDisk: string | null; current: string; drift: boolean };\n  /** RULES.md budget measurement (R5). `null` when the project isn't\n   *  initialized OR `.noir/rules/RULES.md` is absent — in either case there\n   *  is nothing to measure and the check row stays informational (warn skip\n   *  or ok \"no RULES.md\"). Never drives `fail` — over-budget is a `warn`. */\n  rules: {\n    onDisk: { bytes: number; lines: number };\n    budget: { kb: number; maxLines: number };\n    over: boolean;\n  } | null;\n  /** S10 host report. `null` when the project isn't initialized (no resolved\n   *  host); otherwise carries the active `host` + the list of repo-relative\n   *  primary artifact paths the doctor verified (AGENTS.md for agents-md/\n   *  cursor/opencode; the host's native context file when distinct from\n   *  AGENTS.md (claude → CLAUDE.md, gemini → GEMINI.md); the host's MCP\n   *  config). The check row is `ok` when\n   *  all present, `warn` (NEVER `fail`) when any are missing — re-running\n   *  `noir sync` restores them. */\n  host: { active: HostId; expected: string[]; missing: string[] } | null;\n  /** S11 publish-readiness report (repo-developer-facing, advisory). `null`\n   *  when doctor is NOT running from a monorepo checkout (a global install has\n   *  no workspace package.json set to validate → the row reports `ok`\n   *  \"skipped\"). Otherwise carries the count of workspace `package.json` files\n   *  validated + the list of advisory issues found (bad semver, missing\n   *  `files`, cli missing `bin`, …). The row severity is `warn` when any issues\n   *  are present, `ok` otherwise — NEVER `fail` (a missing field does not break\n   *  the local install). */\n  publish: { checked: number; issues: string[] } | null;\n}\n\n// ---------------------------------------------------------------------------\n// Small helpers\n// ---------------------------------------------------------------------------\n\n/** Best-effort probe of the `onnxruntime-node` native binding. */\nasync function probeOnnx(): Promise<{ ok: boolean; reason: string }> {\n  try {\n    // Variable specifier (not a string literal) so tsc does NOT try to resolve\n    // a module the CLI package does not directly depend on — onnxruntime-node\n    // is the context engine's dep and resolves through ITS node_modules at\n    // runtime. Best-effort: hosts that hoist it resolve; otherwise not-loadable.\n    const spec = 'onnxruntime-node';\n    await import(spec);\n    return { ok: true, reason: 'loadable' };\n  } catch (e) {\n    return { ok: false, reason: e instanceof Error ? e.message : String(e) };\n  }\n}\n\n/** Human label for the onnx probe outcome (hides confusing module-not-found noise). */\nfunction describeOnnx(o: { ok: boolean; reason: string }): string {\n  if (o.ok) return 'loadable';\n  if (/Cannot find (module|package)/i.test(o.reason)) {\n    return 'not resolvable from CLI probe (best-effort)';\n  }\n  const r = o.reason.length > 60 ? `${o.reason.slice(0, 59)}…` : o.reason;\n  return `probe failed: ${r}`;\n}\n\nfunction fmtUptime(sec: number): string {\n  if (!Number.isFinite(sec) || sec < 0) return 'unknown';\n  if (sec < 60) return `${sec}s`;\n  if (sec < 3600) return `${Math.floor(sec / 60)}m ${sec % 60}s`;\n  return `${Math.floor(sec / 3600)}h ${Math.floor((sec % 3600) / 60)}m`;\n}\n\nfunction msg(e: unknown): string {\n  return e instanceof Error ? e.message : String(e);\n}\n\n// ---------------------------------------------------------------------------\n// Checks. Each appends to `checks`; project-dependent ones short-circuit to a\n// `warn` \"skipped\" row when the project isn't initialized (so the table still\n// accounts for them, but a pre-init `noir doctor` never exit-1s on them).\n// ---------------------------------------------------------------------------\n\nasync function checkRuntime(checks: CheckResult[]): Promise<void> {\n  checks.push({\n    name: 'runtime',\n    status: 'ok',\n    detail: `noir ${NOIR_VERSION} · node ${process.version} · ${process.platform}`,\n  });\n}\n\nfunction checkConfig(root: string): { project: ProjectInfo | undefined; result: CheckResult } {\n  const configPath = paths.config(root);\n  if (!existsSync(configPath)) {\n    return {\n      project: undefined,\n      result: {\n        name: 'config',\n        status: 'warn',\n        detail: `no .noir/config.yml in ${root} — run \\`noir init\\``,\n      },\n    };\n  }\n  try {\n    const project = loadProjectInfo(root);\n    return {\n      project,\n      result: {\n        name: 'config',\n        status: 'ok',\n        detail: `host=${project.config.host} · mode=${project.config.mode}`,\n      },\n    };\n  } catch (e) {\n    return {\n      project: undefined,\n      result: { name: 'config', status: 'fail', detail: `config parse error: ${msg(e)}` },\n    };\n  }\n}\n\nasync function checkDaemon(checks: CheckResult[]): Promise<void> {\n  const rec = readDaemonRecord();\n  if (!rec) {\n    checks.push({\n      name: 'daemon',\n      status: 'warn',\n      detail: 'not running (start with `noir daemon start`)',\n    });\n    return;\n  }\n  if (!pidAlive(rec.pid)) {\n    checks.push({\n      name: 'daemon',\n      status: 'warn',\n      detail: `stale record (pid ${rec.pid} not alive)`,\n    });\n    return;\n  }\n  try {\n    const res = await fetch(`http://127.0.0.1:${rec.port}/health`);\n    const body =\n      res.status === 200 ? ((await res.json()) as { ok?: boolean; uptimeSec?: number }) : null;\n    if (body && body.ok === true) {\n      checks.push({\n        name: 'daemon',\n        status: 'ok',\n        detail: `running (pid ${rec.pid}, port ${rec.port}, up ${fmtUptime(body.uptimeSec ?? 0)})`,\n      });\n      return;\n    }\n    checks.push({\n      name: 'daemon',\n      status: 'warn',\n      detail: `record present but /health unreachable on port ${rec.port}`,\n    });\n  } catch {\n    checks.push({\n      name: 'daemon',\n      status: 'warn',\n      detail: `record present but /health unreachable on port ${rec.port}`,\n    });\n  }\n}\n\nasync function checkNativeDeps(checks: CheckResult[]): Promise<{ vecOk: boolean }> {\n  // vecAvailability probes better-sqlite3 + sqlite-vec together (the store opens\n  // a Database and loads sqlite-vec). Dynamic import keeps the native bindings\n  // out of cold-start for every other command.\n  const { vecAvailability } = await import('@noir-ai/store');\n  const vec = vecAvailability();\n  const onnx = await probeOnnx();\n  const vecOk = vec.ok === true;\n  const onnxOk = onnx.ok === true;\n  // The sqlite side is CRITICAL (the store cannot open without it). onnx only\n  // backs local embeddings, so its absence is a warning (search → BM25-only).\n  const status: Severity = vecOk ? (onnxOk ? 'ok' : 'warn') : 'fail';\n  checks.push({\n    name: 'native deps',\n    status,\n    detail: `better-sqlite3+sqlite-vec: ${vecOk ? 'loadable' : vec.ok === false ? vec.reason : 'unknown'} · onnxruntime-node: ${describeOnnx(onnx)}`,\n  });\n  return { vecOk };\n}\n\nasync function checkStore(\n  checks: CheckResult[],\n  project: ProjectInfo | undefined,\n  root: string,\n): Promise<void> {\n  if (!project) {\n    checks.push({ name: 'store', status: 'warn', detail: 'skipped — not initialized' });\n    return;\n  }\n  const dbPath = paths.storeDb(root, project.id);\n  if (!existsSync(dbPath)) {\n    // Fresh project: the store DB is created LAZILY when the daemon first runs\n    // (or when content is indexed) — `noir init`/`create` does not pre-create it.\n    // Its absence on an otherwise-initialized project is EXPECTED, not a failure:\n    // surfacing it as `fail` would alarm every new user on their first `noir doctor`.\n    // Warn (never exit-1) with the action that materializes the store.\n    checks.push({\n      name: 'store',\n      status: 'warn',\n      detail: `not created yet — the store DB is created when the daemon first runs (\\`noir daemon start\\` or index content); expected at ${dbPath}`,\n    });\n    return;\n  }\n  const { openStore } = await import('@noir-ai/store');\n  let store: { close(): Promise<void> | void } | undefined;\n  try {\n    store = await openStore({ projectId: project.id, root, readonly: true });\n    checks.push({\n      name: 'store',\n      status: 'ok',\n      detail: `opens readonly (db: ${paths.storeDb(root, project.id)})`,\n    });\n  } catch (e) {\n    checks.push({ name: 'store', status: 'fail', detail: `open failed: ${msg(e)}` });\n  } finally {\n    if (store) {\n      try {\n        await Promise.resolve(store.close());\n      } catch {\n        /* a close error must not mask the open result */\n      }\n    }\n  }\n}\n\nfunction checkEmbedder(\n  checks: CheckResult[],\n  project: ProjectInfo | undefined,\n  vecOk: boolean,\n): void {\n  if (!project) {\n    checks.push({ name: 'embedder', status: 'warn', detail: 'skipped — not initialized' });\n    return;\n  }\n  const emb = project.config.context.embedder;\n  const kind = emb.kind;\n  const model = typeof emb.model === 'string' && emb.model.length > 0 ? emb.model : '<unset>';\n  if (kind === 'none') {\n    checks.push({\n      name: 'embedder',\n      status: 'ok',\n      detail: `kind=none (BM25-only) · dim=${emb.dim}`,\n    });\n    return;\n  }\n  if (!vecOk) {\n    // vec native layer is the embedder's hard prereq (vecs write into vec0).\n    checks.push({\n      name: 'embedder',\n      status: 'warn',\n      detail: `${kind}/${model} (${emb.dim}-dim) configured but vec native layer unavailable — search degrades to BM25`,\n    });\n    return;\n  }\n  checks.push({\n    name: 'embedder',\n    status: 'ok',\n    detail: `${kind}/${model} (${emb.dim}-dim) · vec backend available`,\n  });\n}\n\nfunction checkProvider(checks: CheckResult[], project: ProjectInfo | undefined): void {\n  if (!project) {\n    checks.push({ name: 'provider', status: 'warn', detail: 'skipped — not initialized' });\n    return;\n  }\n  // PURE projection — resolveModelConfig reads config + env-var NAMES only; it\n  // NEVER makes a live call and NEVER infers a provider from env-var presence.\n  const resolved = resolveModelConfig(project.config.model);\n  const names = Object.keys(resolved.providers);\n  if (names.length === 0) {\n    checks.push({\n      name: 'provider',\n      status: 'ok',\n      detail: 'none configured (offline mode; drafting degrades to templates)',\n    });\n    return;\n  }\n  const parts: string[] = [];\n  let missing = false;\n  for (const name of names) {\n    const p = resolved.providers[name];\n    if (!p) continue;\n    const key = p.hasKey ? 'key present' : p.apiKeyEnv ? `missing ${p.apiKeyEnv}` : 'anonymous';\n    if (!p.hasKey && p.apiKeyEnv) missing = true;\n    parts.push(`${name}/${p.model ?? '?'} (${key})`);\n  }\n  // Provider readiness is never CRITICAL — the model layer degrades to `null`\n  // (templates) when a key is missing, so this is an ok/warn signal only.\n  checks.push({\n    name: 'provider',\n    status: missing ? 'warn' : 'ok',\n    detail: parts.join(' · '),\n  });\n}\n\nfunction checkScaffoldVersion(\n  checks: CheckResult[],\n  root: string,\n): {\n  onDisk: string | null;\n  current: string;\n  drift: boolean;\n} {\n  // readScaffoldVersion never throws — it returns null on an absent/malformed\n  // stamp, so doctor keeps reporting even on a partially-initialized project.\n  const onDisk = readScaffoldVersion(root);\n  const current = CURRENT_SCAFFOLD_VERSION;\n  const drift = onDisk !== null && onDisk !== current;\n  // Drift is NEVER critical: a stale scaffold still works (the manifest entries\n  // are forward-compatible), it just means `noir init --upgrade` will run\n  // pending migrations. Absent stamp on an uninitialized project → warn (parity\n  // with the other project-dependent checks that skip-with-warn pre-init).\n  const status: Severity = onDisk === null || drift ? 'warn' : 'ok';\n  const detail =\n    onDisk === null\n      ? 'no .noir/scaffold-version stamp (run `noir init`)'\n      : drift\n        ? `on-disk ${onDisk} ≠ current ${current} (run \\`noir init --upgrade\\`)`\n        : `${onDisk} (up to date)`;\n  checks.push({ name: 'scaffold version', status, detail });\n  return { onDisk, current, drift };\n}\n\n/**\n * Soft RULES.md budget cap (R5). Mirrors the Failure-Backed Rules doctrine:\n * an over-budget RULES.md tends to accumulate stale / speculative clauses, so\n * doctor warns (NEVER fails — purely a hygiene nudge) when the file exceeds\n * the configured `lengthBudgetKb` (default 6 KB) OR a 150-line ceiling. The\n * check is honest about the three \"nothing to measure\" cases:\n *\n *   • project not initialized  → skip-warn (parity with store/embedder/provider)\n *   • RULES.md absent          → ok informational (no file = no budget problem)\n *   • RULES.md unreadable      → warn (treat like a malformed-stamp: surface it)\n *\n * Returns the structured measurement for the `--json` envelope's `data.rules`,\n * or `null` when there is nothing to measure (absent / skipped).\n */\nfunction checkRulesMdBudget(\n  checks: CheckResult[],\n  root: string,\n  project: ProjectInfo | undefined,\n): {\n  onDisk: { bytes: number; lines: number };\n  budget: { kb: number; maxLines: number };\n  over: boolean;\n} | null {\n  if (!project) {\n    checks.push({ name: 'rules budget', status: 'warn', detail: 'skipped — not initialized' });\n    return null;\n  }\n  const rulesPath = paths.rulesMd(root);\n  if (!existsSync(rulesPath)) {\n    // No RULES.md is fine — most projects don't have one yet. Informational ok\n    // so a green run stays green without forcing a file creation.\n    checks.push({\n      name: 'rules budget',\n      status: 'ok',\n      detail: 'no .noir/rules/RULES.md',\n    });\n    return null;\n  }\n  // Read + measure. A read/decode failure surfaces as a warn (parallel to the\n  // malformed-stamp handling in checkScaffoldVersion): the doctor keeps\n  // reporting rather than crashing, and the user sees a clear hint.\n  let content: string;\n  try {\n    content = readFileSync(rulesPath, 'utf8');\n  } catch (e) {\n    checks.push({\n      name: 'rules budget',\n      status: 'warn',\n      detail: `RULES.md unreadable: ${msg(e)}`,\n    });\n    return null;\n  }\n  // bytes = UTF-8 file size on disk (the natural unit for a KB budget). lines\n  // uses wc-style counting: count of '\\n' chars, +1 if the last line has no\n  // trailing newline; 0 only for an empty file.\n  const bytes = Buffer.byteLength(content, 'utf8');\n  const lineCount =\n    content.length === 0 ? 0 : content.split('\\n').length - (content.endsWith('\\n') ? 1 : 0);\n  const lengthBudgetKb = project.config.rules.lengthBudgetKb;\n  const budgetBytes = lengthBudgetKb * 1024;\n  const maxLines = 150;\n  const overBytes = bytes > budgetBytes;\n  const overLines = lineCount > maxLines;\n  const over = overBytes || overLines;\n  const status: Severity = over ? 'warn' : 'ok';\n  const kb = (n: number): string => (n / 1024).toFixed(1);\n  const detail = over\n    ? `OVER: ${kb(bytes)} KB / ${lengthBudgetKb} KB · ${lineCount}/${maxLines} lines — trim RULES.md (failure-backed clauses only) or raise rules.lengthBudgetKb`\n    : `${kb(bytes)} KB / ${lengthBudgetKb} KB · ${lineCount}/${maxLines} lines (within budget)`;\n  checks.push({ name: 'rules budget', status, detail });\n  return {\n    onDisk: { bytes, lines: lineCount },\n    budget: { kb: lengthBudgetKb, maxLines },\n    over,\n  };\n}\n\nfunction summarize(checks: CheckResult[]): DoctorPayload['summary'] {\n  let ok = 0;\n  let warnN = 0;\n  let fail = 0;\n  for (const c of checks) {\n    if (c.status === 'ok') ok++;\n    else if (c.status === 'warn') warnN++;\n    else fail++;\n  }\n  return { ok, warn: warnN, fail };\n}\n\n/**\n * S10 — host-artifacts presence check. Reports the ACTIVE host (read from\n * `project.config.host`) + verifies the host's primary emission paths exist on\n * disk. The expected set mirrors `buildHostArtifacts` in @noir-ai/create:\n *\n *   - AGENTS.md for the hosts that emit it (agents-md/cursor/opencode — their\n *     native context surface IS AGENTS.md). claude/gemini do NOT emit AGENTS.md\n *     (their CLAUDE.md/GEMINI.md @-import the canonical .noir/ sources; a root\n *     AGENTS.md would double-import them — fix-wave I1 removed that delta).\n *   - The host's native context file when distinct from AGENTS.md\n *     (claude → CLAUDE.md; gemini → GEMINI.md; agents-md/cursor/opencode →\n *     none, AGENTS.md IS the context). Cursor's working-rules ride AGENTS.md's\n *     `@.noir/rules/RULES.md` import — NO separate `.cursor/rules/noir-contract.mdc`\n *     host-rules pointer (it was `noir-`-prefixed and the C3 cursor flat-skill\n *     prune deleted it on every sync).\n *   - The host's MCP config (.mcp.json / .gemini/mcp.json / .cursor/mcp.json /\n *     opencode.json).\n *\n * Severity is `ok` when every expected path exists, `warn` when any are\n * missing (NEVER `fail` — a missing host artifact is restored by `noir sync`,\n * not a critical product failure). Mirrors the policy of the other\n * presence/projection checks (scaffold-version drift, RULES.md budget): warn,\n * surface the remediation, never block.\n *\n * Returns the structured payload for the `--json` envelope's `data.host`, or\n * `null` when the project isn't initialized (no resolved host).\n */\nfunction checkHostArtifacts(\n  checks: CheckResult[],\n  root: string,\n  project: ProjectInfo | undefined,\n): { active: HostId; expected: string[]; missing: string[] } | null {\n  if (!project) {\n    checks.push({ name: 'host artifacts', status: 'warn', detail: 'skipped — not initialized' });\n    return null;\n  }\n  const host = project.config.host;\n  const adapter = resolveAdapter(host);\n  const ectx = { root };\n\n  // Build the expected repo-relative path list. Mirrors buildHostArtifacts in\n  // @noir-ai/create so a missing row maps 1:1 to a manifest entry the user can\n  // restore with `noir sync`. Kept inline (not imported) so doctor stays a\n  // READ-ONLY health probe with zero write-side coupling.\n  const expected: string[] = [];\n  // AGENTS.md — only for hosts whose emitContext IS the AGENTS.md (I1: claude/\n  // gemini skip it — their native context file already covers .noir/).\n  const emitsAgentsMd = host === 'agents-md' || host === 'cursor' || host === 'opencode';\n  if (emitsAgentsMd) {\n    expected.push(relOr(adapter.agentsMdPath?.(ectx) ?? 'AGENTS.md', root));\n  }\n  // Host-native context file (when distinct from AGENTS.md).\n  if (host === 'claude') expected.push('CLAUDE.md');\n  else if (host === 'gemini') expected.push('GEMINI.md');\n  // Cursor has NO separate host-rules .mdc — the prior `noir-contract.mdc`\n  // pointer was REMOVED (it was `noir-`-prefixed, so the C3 cursor flat-skill\n  // prune in emitSkillsToDir deleted it on every noir init/create/sync).\n  // Cursor's rules ride AGENTS.md's `@.noir/rules/RULES.md` import instead.\n  // Host MCP config (fallback .mcp.json for claude/agents-md).\n  expected.push(relOr(adapter.mcpConfigPath?.(ectx) ?? '.mcp.json', root));\n\n  const missing = expected.filter((p) => !existsSync(joinRoot(root, p)));\n  const status: Severity = missing.length === 0 ? 'ok' : 'warn';\n  const detail =\n    missing.length === 0\n      ? `host=${host} · all ${expected.length} primary artifacts present`\n      : `host=${host} · missing ${missing.join(', ')} (run \\`noir sync\\` to restore)`;\n  checks.push({ name: 'host artifacts', status, detail });\n  return { active: host, expected, missing };\n}\n\n// ---------------------------------------------------------------------------\n// SP-A — nested-`.noir` detection (read-only).\n// ---------------------------------------------------------------------------\n\n/**\n * Detects the fingerprint of a `noir init`/`create` run from INSIDE `.noir/`\n * (now PREVENTED by `assertSafeRoot` in @noir-ai/create, but legacy/already-\n * nested projects still carry the damage): a nested `<root>/.noir/.noir/` store\n * and/or host artifacts emitted into `.noir/` as if it were a project root\n * (`.noir/CLAUDE.md`, `.noir/.mcp.json`, `.noir/.claude/`, and the ignore files\n * `.noir/.gitignore` / `.dockerignore` / `.npmignore` / `.prettierignore`).\n * Read-only `warn` —\n * doctor never mutates; remediation is manual removal (a future follow-up\n * slice can automate it). Never `fail`: a nested store wastes space + confuses\n * tooling but does not break the outer project.\n */\nexport function checkNestedNoir(\n  checks: CheckResult[],\n  root: string,\n): { detected: boolean; paths: string[] } {\n  const candidates = [\n    '.noir/.noir',\n    '.noir/CLAUDE.md',\n    '.noir/.mcp.json',\n    '.noir/.claude',\n    '.noir/.gitignore',\n    '.noir/.dockerignore',\n    '.noir/.npmignore',\n    '.noir/.prettierignore',\n  ];\n  const found = candidates.filter((rel) => existsSync(join(root, rel)));\n  const detected = found.length > 0;\n  checks.push({\n    name: 'nested .noir',\n    status: detected ? 'warn' : 'ok',\n    detail: detected\n      ? `nested Noir artifacts inside .noir/ (${found.join(', ')}) — likely from running \\`noir init\\` inside .noir/. Remove them; the real project is at ${root}.`\n      : 'no nested .noir/ artifacts',\n  });\n  return { detected, paths: found };\n}\n\n// ---------------------------------------------------------------------------\n// SP-C deferred — semantic duplicate detection (`--dedup`; loads the embedder).\n// ---------------------------------------------------------------------------\n\n/** Local embedder shape (@noir-ai/context's `EmbedFn`). */\ntype EmbedLike = (text: string) => Promise<Float32Array>;\n\n/**\n * Collect dedup candidates: the host context files that exist at the root\n * (CLAUDE.md / AGENTS.md / GEMINI.md — the hand-mirrored-overlap case) plus\n * `.noir/rules/RULES.md`. `.noir/NOIR.md` is EXCLUDED because host context\n * files `@import` it by design (their similarity is intentional, not a dup).\n */\nexport function collectDedupCandidates(root: string): { path: string; text: string }[] {\n  const rels = ['CLAUDE.md', 'AGENTS.md', 'GEMINI.md', '.noir/rules/RULES.md'];\n  const out: { path: string; text: string }[] = [];\n  for (const rel of rels) {\n    const abs = join(root, rel);\n    if (!existsSync(abs)) continue;\n    let text: string;\n    try {\n      text = readFileSync(abs, 'utf8');\n    } catch {\n      continue;\n    }\n    if (text.trim().length === 0) continue;\n    out.push({ path: rel, text });\n  }\n  return out;\n}\n\n/**\n * `noir doctor --dedup`: embed the host-context + RULES.md candidates and\n * report near-duplicate pairs (cosine ≥ 0.90). The ONLY mechanism that catches\n * cross-file SEMANTIC overlap (e.g. a hand-mirrored CLAUDE.md ≈ AGENTS.md) —\n * exact content-hash cannot. Opt-in so a default `noir doctor` never pays the\n * embedder-load cost; degrades to a `warn` skip when the embedder is\n * unavailable (kind=none / native layer missing). `opts.embed` is a testability\n * seam — tests inject a deterministic fake; production omits it and the local\n * embedder is lazy-loaded via `@noir-ai/context`.\n */\nexport async function checkSemanticDupDoctor(\n  checks: CheckResult[],\n  root: string,\n  project: ProjectInfo | undefined,\n  opts: { embed?: EmbedLike } = {},\n): Promise<void> {\n  if (!project) {\n    checks.push({ name: 'semantic dup', status: 'warn', detail: 'skipped — not initialized' });\n    return;\n  }\n  const candidates = collectDedupCandidates(root);\n  if (candidates.length < 2) {\n    checks.push({\n      name: 'semantic dup',\n      status: 'ok',\n      detail: `${candidates.length} candidate file(s); nothing to compare`,\n    });\n    return;\n  }\n  const ctx = await import('@noir-ai/context');\n  let embed: EmbedLike | undefined = opts.embed;\n  if (!embed) {\n    const cfg = ctx.resolveEmbedderConfig(project.config.context);\n    if (cfg.kind === 'none') {\n      checks.push({\n        name: 'semantic dup',\n        status: 'warn',\n        detail: 'embedder kind=none — set context.embedder.kind=local to enable semantic dedup',\n      });\n      return;\n    }\n    try {\n      embed = ctx.createEmbedFn(cfg).embed as EmbedLike;\n    } catch (e) {\n      checks.push({\n        name: 'semantic dup',\n        status: 'warn',\n        detail: `embedder unavailable — skipped (${msg(e)})`,\n      });\n      return;\n    }\n  }\n  if (!embed) return;\n  const pairs = await ctx.findSemanticDuplicates(candidates, embed, ctx.DEFAULT_DUP_THRESHOLD);\n  checks.push({\n    name: 'semantic dup',\n    status: pairs.length > 0 ? 'warn' : 'ok',\n    detail:\n      pairs.length === 0\n        ? `no near-duplicates across ${candidates.length} file(s)`\n        : `${pairs.length} near-duplicate pair${pairs.length === 1 ? '' : 's'}: ${pairs\n            .map((p) => `${p.a}≈${p.b} (${p.similarity.toFixed(2)})`)\n            .join('; ')}`,\n  });\n}\n\n// ---------------------------------------------------------------------------\n// S11 — publish-readiness check (advisory, repo-developer-facing).\n// ---------------------------------------------------------------------------\n\n/**\n * Resolve the workspace `packages/` directory from the CLI's own location —\n * walk up from `import.meta.url` to the nearest `package.json` named\n * `@noir-ai/cli`, then return its PARENT dir (the `packages/` root) IF that\n * dir's parent carries the monorepo marker (`pnpm-workspace.yaml`). Returns\n * `null` when not running from a monorepo checkout (a global `npm install -g`\n * has no `packages/*` workspace to validate → the publish check skips).\n *\n * The walk is robust across layouts: source (`packages/cli/src/commands/`),\n * built (`packages/cli/dist/`), and bundled-chunk (`packages/cli/dist/`) all\n * walk up to `packages/cli/package.json`. In a global install the same walk\n * lands on `node_modules/@noir-ai/cli/package.json`, whose parent\n * (`node_modules/@noir-ai/`) has NO `pnpm-workspace.yaml` parent → null.\n */\nfunction resolveWorkspacePackagesDir(): string | null {\n  let here = dirname(fileURLToPath(import.meta.url));\n  // Bound the walk so a pathological layout never loops the filesystem.\n  for (let i = 0; i < 8; i++) {\n    const pkgPath = join(here, 'package.json');\n    if (existsSync(pkgPath)) {\n      try {\n        const pkg = JSON.parse(readFileSync(pkgPath, 'utf8')) as { name?: string };\n        if (pkg.name === '@noir-ai/cli') {\n          // `here` is the cli package dir; `dirname(here)` is `packages/`.\n          const packagesDir = dirname(here);\n          // Monorepo gate: the repo root (`dirname(packagesDir)`) carries\n          // `pnpm-workspace.yaml`. A global install fails this gate.\n          if (existsSync(join(dirname(packagesDir), 'pnpm-workspace.yaml'))) {\n            return packagesDir;\n          }\n          return null;\n        }\n      } catch {\n        // Malformed package.json — keep walking.\n      }\n    }\n    const parent = dirname(here);\n    if (parent === here) break; // filesystem root\n    here = parent;\n  }\n  return null;\n}\n\n/**\n * Permissive semver-ish regex for the advisory check. Accepts release and\n * pre-release/build forms (`1.0.0`, `1.1.0-beta.1`, `1.2.0+build.4`). Strict\n * enough to catch the obvious foot-guns (a git SHA, a literal \"latest\", a\n * missing patch) without pulling in the `semver` package for a warn-level\n * check. `npm publish` itself enforces rigor at pack time.\n */\nconst SEMVER_ISH = /^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/;\n\n/** Best-effort `npm pack --dry-run` on the cli package — read-only (it does\n *  NOT write the tarball). Returns `{ fileCount, distIncluded }` parsed from\n *  npm's notice output, or `{ error }` when npm is unavailable / the pack\n *  fails. Gated on npm being on PATH (the spec's expensive-but-optional leg):\n *  we probe `npm --version` first and skip-with-note if it isn't resolvable. */\nfunction npmPackDryRun(\n  cliPkgDir: string,\n): { fileCount: number | null; distIncluded: boolean | null } | { error: string } {\n  // Probe npm availability first (cheap). shell:true so Windows finds npm.cmd.\n  const probe = spawnSync('npm', ['--version'], { encoding: 'utf8', shell: true });\n  if (probe.status !== 0 || probe.error) {\n    return { error: probe.error ? probe.error.message : 'npm not on PATH' };\n  }\n  // `npm pack --dry-run` lists the tarball contents without writing the file.\n  // It IS read-only (npm's own docs: \"--dry-run ... does not write anything\").\n  const res = spawnSync('npm', ['pack', '--dry-run'], {\n    cwd: cliPkgDir,\n    encoding: 'utf8',\n    shell: true,\n  });\n  if (res.status !== 0 || res.error) {\n    return { error: res.error ? res.error.message : `npm pack exited ${res.status ?? '?'}` };\n  }\n  const out = `${res.stdout ?? ''}\\n${res.stderr ?? ''}`;\n  // `npm notice total files: 42` — the canonical summary line.\n  const totalMatch = out.match(/total files:\\s*(\\d+)/i);\n  const fileCount = totalMatch?.[1] ? Number.parseInt(totalMatch[1], 10) : null;\n  // `dist/` appears in the tarball contents (`npm notice <size> dist/<file>`).\n  const distIncluded = /\\bdist\\//.test(out);\n  return { fileCount, distIncluded };\n}\n\n/**\n * S11 publish-readiness check. For every workspace `package.json` under\n * `packagesDir`, validate publishability:\n *   - `name` starts with `@noir-ai/`\n *   - `version` matches {@link SEMVER_ISH}\n *   - `files` is a non-empty array\n *   - the cli package has a `bin` field\n *\n * Optionally runs `npm pack --dry-run` on the cli package (best-effort, gated\n * on npm being available) to report the file count + confirm `dist/` ships.\n *\n * Severity is ALWAYS `ok` or `warn` — NEVER `fail`: a missing/odd package.json\n * field does not break the local install (this is an advisory nudge to repo\n * developers, not a project-facing health check). The check runs ALWAYS (it\n * produces a row in every doctor report) but returns `null` from\n * `data.publish` when not running from a monorepo (`packagesDir === null`).\n */\nexport function checkPublish(\n  checks: CheckResult[],\n  packagesDir: string | null,\n  opts: { skipNpmPack?: boolean } = {},\n): { checked: number; issues: string[] } | null {\n  if (packagesDir === null) {\n    checks.push({\n      name: 'publish',\n      status: 'ok',\n      detail: 'skipped — not a monorepo checkout (no packages/* workspace)',\n    });\n    return null;\n  }\n  // Discover workspace package.json files (depth-1 dirs only — no glob dep).\n  let entries: string[] = [];\n  try {\n    entries = readdirSync(packagesDir, { withFileTypes: true })\n      .filter((d) => d.isDirectory())\n      .map((d) => d.name);\n  } catch (e) {\n    checks.push({\n      name: 'publish',\n      status: 'warn',\n      detail: `could not read ${packagesDir}: ${msg(e)}`,\n    });\n    return { checked: 0, issues: [`unreadable packages dir: ${msg(e)}`] };\n  }\n\n  const issues: string[] = [];\n  let checked = 0;\n  let cliDir: string | null = null;\n  for (const name of entries) {\n    const pkgPath = join(packagesDir, name, 'package.json');\n    if (!existsSync(pkgPath)) continue;\n    let pkg: Record<string, unknown>;\n    try {\n      pkg = JSON.parse(readFileSync(pkgPath, 'utf8')) as Record<string, unknown>;\n    } catch (e) {\n      issues.push(`${name}/package.json: unparseable (${msg(e)})`);\n      checked++;\n      continue;\n    }\n    checked++;\n    const pkgName = typeof pkg.name === 'string' ? pkg.name : '';\n    if (!pkgName.startsWith('@noir-ai/')) {\n      issues.push(`${name}/package.json: name '${pkgName}' is not @noir-ai/*`);\n    }\n    const version = typeof pkg.version === 'string' ? pkg.version : '';\n    if (!SEMVER_ISH.test(version)) {\n      issues.push(`${name}/package.json: version '${version}' is not semver`);\n    }\n    if (!Array.isArray(pkg.files) || pkg.files.length === 0) {\n      issues.push(`${name}/package.json: files missing or empty`);\n    }\n    if (pkgName === '@noir-ai/cli') {\n      if (pkg.bin == null || (typeof pkg.bin === 'object' && Object.keys(pkg.bin).length === 0)) {\n        issues.push(`${name}/package.json: bin missing (cli package must declare a bin)`);\n      }\n      cliDir = join(packagesDir, name);\n    }\n  }\n\n  // Best-effort npm pack --dry-run on the cli package. Gated on npm being\n  // available; a failure here is surfaced in the detail but does NOT add an\n  // issue (it is environmental, not a package.json defect). `skipNpmPack` is a\n  // testability seam — synthetic test fixtures have no real `dist/`, so the\n  // dist-absent signal would otherwise pollute the package.json-validation\n  // assertions. Production (`doctor()`) leaves it unset.\n  let packNote = '';\n  if (cliDir && opts.skipNpmPack !== true) {\n    const pack = npmPackDryRun(cliDir);\n    if ('error' in pack) {\n      packNote = ` · npm pack skipped (${pack.error})`;\n    } else {\n      const count = pack.fileCount == null ? '?' : String(pack.fileCount);\n      const dist = pack.distIncluded ? 'dist/ included' : 'dist/ NOT in tarball';\n      packNote = ` · npm pack: ${count} files, ${dist}`;\n      if (pack.distIncluded === false) {\n        issues.push('cli npm pack --dry-run: dist/ absent from the tarball');\n      }\n    }\n  }\n\n  const status: Severity = issues.length > 0 ? 'warn' : 'ok';\n  const detail =\n    issues.length === 0\n      ? `${checked}/${entries.length} packages publish-ready${packNote}`\n      : `${issues.length} issue${issues.length === 1 ? '' : 's'} across ${checked} package${checked === 1 ? '' : 's'}${packNote}`;\n  checks.push({ name: 'publish', status, detail });\n  return { checked, issues };\n}\n\n/** Repo-relative POSIX form of `abs` under `root`. Defensive (N2): rejects\n *  paths that escape `root` — mirrors `hostRel` in @noir-ai/create/manifest.ts.\n *  A future adapter that returns a stray path fails loudly here instead of\n *  producing a misleading \"missing\" row for a path doctor would never probe.\n *  Relative literals (e.g. `'AGENTS.md'`, `'.mcp.json'`) pass through unchanged\n *  AFTER the `..`-escape check so a buggy literal could not exfiltrate either. */\nfunction relOr(abs: string, root: string): string {\n  const posix = abs.replace(/\\\\/g, '/');\n  if (posix.startsWith('/')) {\n    const rel = relative(root, abs).replace(/\\\\/g, '/');\n    if (rel.length === 0 || rel.startsWith('..') || rel.startsWith('/')) {\n      throw new Error(`doctor: host path '${abs}' is not under root '${root}'`);\n    }\n    return rel;\n  }\n  // Already-relative literal: still reject `..` segments (a `../etc/passwd`\n  // literal from a buggy adapter must not silently pass through).\n  if (posix.split('/').some((seg) => seg === '..')) {\n    throw new Error(`doctor: host path '${abs}' escapes root '${root}'`);\n  }\n  return posix;\n}\n\n/** Join `root` with a repo-relative POSIX path for an existsSync probe. */\nfunction joinRoot(root: string, relPath: string): string {\n  return `${root}/${relPath}`;\n}\n\nfunction renderHuman(payload: DoctorPayload, opts: CliOptions): void {\n  log(\n    `noir doctor — ${payload.checks.length} check${payload.checks.length === 1 ? '' : 's'}`,\n    opts,\n  );\n  table(\n    payload.checks.map((c) => ({\n      Check: c.name,\n      Status: c.status.toUpperCase(),\n      Detail: c.detail,\n    })),\n    ['Check', 'Status', 'Detail'],\n    opts,\n  );\n  const { ok, warn: warnN, fail } = payload.summary;\n  if (fail > 0) {\n    err(\n      `${fail} critical check${fail === 1 ? '' : 's'} failed (${warnN} warning${warnN === 1 ? '' : 's'}, ${ok} ok)`,\n      opts,\n    );\n  } else if (warnN > 0) {\n    warn(`all critical checks passed (${warnN} warning${warnN === 1 ? '' : 's'}, ${ok} ok)`, opts);\n  } else {\n    success(`all ${ok} check${ok === 1 ? '' : 's'} passed`, opts);\n  }\n}\n\n/**\n * `noir doctor`: run all checks, render, and exit.\n *\n * Under `--json` writes `{ok:true, data: DoctorPayload}` to stdout (always —\n * the command produced a diagnosis). The exit code carries health: 0 when no\n * check failed, 1 when any CRITICAL (`fail`) check is unhealthy.\n */\nexport async function doctor(opts: DoctorOptions = {}): Promise<void> {\n  const root = process.cwd();\n  const checks: CheckResult[] = [];\n\n  await checkRuntime(checks);\n  const { project, result: configResult } = checkConfig(root);\n  checks.push(configResult);\n  await checkDaemon(checks);\n  const { vecOk } = await checkNativeDeps(checks);\n  await checkStore(checks, project, root);\n  checkEmbedder(checks, project, vecOk);\n  checkProvider(checks, project);\n  const scaffold = checkScaffoldVersion(checks, root);\n  const rules = checkRulesMdBudget(checks, root, project);\n  const host = checkHostArtifacts(checks, root, project);\n  checkNestedNoir(checks, root);\n  if (opts.dedup === true) {\n    await checkSemanticDupDoctor(checks, root, project);\n  }\n  const publish = checkPublish(checks, resolveWorkspacePackagesDir());\n\n  const summary = summarize(checks);\n  const payload: DoctorPayload = {\n    noir: NOIR_VERSION,\n    checks,\n    summary,\n    scaffold,\n    rules,\n    host,\n    publish,\n  };\n\n  if (opts.json === true) {\n    process.stdout.write(`${JSON.stringify({ ok: true, data: payload })}\\n`);\n  } else {\n    renderHuman(payload, opts);\n  }\n\n  if (summary.fail > 0) {\n    // Under --json the data envelope is already on stdout; throw with an empty\n    // message so handleError sets exitCode=1 without a redundant stderr line.\n    // Under human mode the summary line above already named the failures.\n    throw new NoirCliError(\n      EXIT.ERROR,\n      opts.json === true ? '' : `noir doctor: ${summary.fail} critical check(s) failed`,\n    );\n  }\n}\n","import { loadProjectInfo } from '@noir-ai/core';\nimport { ensureDaemonRunning, startStdioServer } from '@noir-ai/daemon';\n\nexport async function serve(opts: { stdio: boolean }): Promise<void> {\n  const project = loadProjectInfo(process.cwd());\n  if (opts.stdio) {\n    await startStdioServer({ project, transport: 'stdio', daemon: false });\n    return; // stdio server runs until stdin closes\n  }\n  // Prefer the shared daemon; on failure fall back to in-process stdio so Noir\n  // keeps working even when the daemon cannot start (FS-degradation path).\n  try {\n    const { url } = await ensureDaemonRunning({\n      project,\n      idleTimeoutSec: project.config.daemon.idleTimeoutSec,\n    });\n    process.stderr.write(\n      `Noir daemon available at ${url}. (For HTTP clients, use this URL in .mcp.json.)\\n`,\n    );\n  } catch (err) {\n    process.stderr.write(\n      `Noir daemon unavailable (${err instanceof Error ? err.message : String(err)}); falling back to stdio.\\n`,\n    );\n    await startStdioServer({ project, transport: 'stdio', daemon: false });\n  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package/dist/index.js

@@ -2,7 +2,7 @@
 import {
   doctor,
   serve
-} from "./chunk-J5HAAQI4.js";
+} from "./chunk-3QMQXBII.js";
 import {
   init
 } from "./chunk-J2Y3BOVK.js";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@noir-ai/cli",
-  "version": "1.3.0-beta.2",
+  "version": "1.3.0-beta.4",
   "description": "Noir CLI — the `noir` command tree (commander + @clack/prompts), the shell entry point to the Noir AI toolkit.",
   "license": "MIT",
   "author": "agaaaptr",
@@ -52,14 +52,14 @@
     "commander": "^12.1.0",
     "ora": "^8.1.0",
     "picocolors": "^1.1.1",
-    "@noir-ai/adapters": "1.3.0-beta.2",
-    "@noir-ai/context": "1.3.0-beta.2",
-    "@noir-ai/create": "1.3.0-beta.2",
-    "@noir-ai/core": "1.3.0-beta.2",
-    "@noir-ai/model": "1.3.0-beta.2",
-    "@noir-ai/skills": "1.3.0-beta.2",
-    "@noir-ai/store": "1.3.0-beta.2",
-    "@noir-ai/daemon": "1.3.0-beta.2"
+    "@noir-ai/adapters": "1.3.0-beta.4",
+    "@noir-ai/core": "1.3.0-beta.4",
+    "@noir-ai/create": "1.3.0-beta.4",
+    "@noir-ai/skills": "1.3.0-beta.4",
+    "@noir-ai/daemon": "1.3.0-beta.4",
+    "@noir-ai/model": "1.3.0-beta.4",
+    "@noir-ai/context": "1.3.0-beta.4",
+    "@noir-ai/store": "1.3.0-beta.4"
   },
   "devDependencies": {
     "@types/node": "^26.1.1"

package/dist/chunk-J5HAAQI4.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/commands/doctor.ts","../src/serve.ts"],"sourcesContent":["// S9 t6 — `noir doctor`.\n//\n// Environment + project health. Runs a fixed set of checks and renders a\n// results table (human, stderr) or the versioned `{ok,data}` envelope (--json,\n// stdout). Exit 1 if any CRITICAL (fail) check is unhealthy, else 0.\n//\n// Severity model (S9 spec F8 / t6):\n//   - ok   — healthy.\n//   - warn — degraded but usable (daemon down, onnx missing, provider key\n//            missing, project not initialized). NEVER triggers exit 1.\n//   - fail — CRITICAL: the product is broken on this host. Only `config` (parse\n//            error), `native deps` (better-sqlite3 / sqlite-vec will not load),\n//            and `store` (open fails) can fail. Exit 1 if any fail.\n//\n// Honesty rules: provider status uses `resolveModelConfig` — a PURE projection\n// of the user's config + env-var NAME presence; it makes NO live call (blueprint\n// D5/DS-6). Native-dep probes are best-effort try/catch (the store's native\n// binaries are probed via `vecAvailability`, the single cross-package surface;\n// onnxruntime-node is the context engine's own dep and is probed separately).\n//\n// Cold-start (NF6): the @noir-ai/store import (which loads better-sqlite3) is\n// DYNAMIC, inside the action, so merely running `noir status` / `noir --help`\n// never pays the native-bindings cost. @noir-ai/model is imported eagerly — its\n// provider self-registration is light (SDKs load lazily inside `complete()`).\n//\n// Stream discipline (S9 DS-4): `--json` writes `{ok:true, data:{checks,summary}}`\n// to stdout (the only stdout write). Doctor always emits `ok:true` because the\n// COMMAND succeeded in producing a diagnosis; the system-health pass/fail is\n// signaled by the EXIT CODE (0 healthy / 1 critical failure) — the same shape\n// `npm audit --json` uses (valid JSON out, non-zero exit when issues found).\n\nimport { spawnSync } from 'node:child_process';\nimport { existsSync, readdirSync, readFileSync } from 'node:fs';\nimport { dirname, join, relative } from 'node:path';\nimport { fileURLToPath } from 'node:url';\nimport { type HostId, resolveAdapter } from '@noir-ai/adapters';\nimport { loadProjectInfo, NOIR_VERSION, type ProjectInfo, paths } from '@noir-ai/core';\nimport { CURRENT_SCAFFOLD_VERSION, readScaffoldVersion } from '@noir-ai/create';\nimport { pidAlive, readDaemonRecord } from '@noir-ai/daemon';\nimport { resolveModelConfig } from '@noir-ai/model';\nimport {\n  type CliOptions,\n  EXIT,\n  error as err,\n  log,\n  NoirCliError,\n  success,\n  table,\n  warn,\n} from '../output.js';\n\n/** Options accepted by `doctor`: the global flags + the opt-in `--dedup`. */\nexport interface DoctorOptions extends CliOptions {\n  /** `--dedup`: scan host-context + `.noir/` docs for semantic near-duplicates.\n   *  Opt-in (loads the local embedder) so a default `noir doctor` stays fast. */\n  dedup?: boolean;\n}\n\ntype Severity = 'ok' | 'warn' | 'fail';\n\n/** One row of the doctor report (table cell + `--json` element). */\nexport interface CheckResult {\n  name: string;\n  status: Severity;\n  detail: string;\n}\n\n/** The `data` payload of `noir doctor --json`. */\nexport interface DoctorPayload {\n  noir: string;\n  checks: CheckResult[];\n  summary: { ok: number; warn: number; fail: number };\n  /** Scaffold-version drift (slice S). `onDisk` is null when the stamp is\n   *  absent (uninitialized or pre-Slice-S project); `drift` is true only when\n   *  a stamp is present AND differs from the engine's current version. */\n  scaffold: { onDisk: string | null; current: string; drift: boolean };\n  /** RULES.md budget measurement (R5). `null` when the project isn't\n   *  initialized OR `.noir/rules/RULES.md` is absent — in either case there\n   *  is nothing to measure and the check row stays informational (warn skip\n   *  or ok \"no RULES.md\"). Never drives `fail` — over-budget is a `warn`. */\n  rules: {\n    onDisk: { bytes: number; lines: number };\n    budget: { kb: number; maxLines: number };\n    over: boolean;\n  } | null;\n  /** S10 host report. `null` when the project isn't initialized (no resolved\n   *  host); otherwise carries the active `host` + the list of repo-relative\n   *  primary artifact paths the doctor verified (AGENTS.md for agents-md/\n   *  cursor/opencode; the host's native context file when distinct from\n   *  AGENTS.md (claude → CLAUDE.md, gemini → GEMINI.md); the host's MCP\n   *  config). The check row is `ok` when\n   *  all present, `warn` (NEVER `fail`) when any are missing — re-running\n   *  `noir sync` restores them. */\n  host: { active: HostId; expected: string[]; missing: string[] } | null;\n  /** S11 publish-readiness report (repo-developer-facing, advisory). `null`\n   *  when doctor is NOT running from a monorepo checkout (a global install has\n   *  no workspace package.json set to validate → the row reports `ok`\n   *  \"skipped\"). Otherwise carries the count of workspace `package.json` files\n   *  validated + the list of advisory issues found (bad semver, missing\n   *  `files`, cli missing `bin`, …). The row severity is `warn` when any issues\n   *  are present, `ok` otherwise — NEVER `fail` (a missing field does not break\n   *  the local install). */\n  publish: { checked: number; issues: string[] } | null;\n}\n\n// ---------------------------------------------------------------------------\n// Small helpers\n// ---------------------------------------------------------------------------\n\n/** Best-effort probe of the `onnxruntime-node` native binding. */\nasync function probeOnnx(): Promise<{ ok: boolean; reason: string }> {\n  try {\n    // Variable specifier (not a string literal) so tsc does NOT try to resolve\n    // a module the CLI package does not directly depend on — onnxruntime-node\n    // is the context engine's dep and resolves through ITS node_modules at\n    // runtime. Best-effort: hosts that hoist it resolve; otherwise not-loadable.\n    const spec = 'onnxruntime-node';\n    await import(spec);\n    return { ok: true, reason: 'loadable' };\n  } catch (e) {\n    return { ok: false, reason: e instanceof Error ? e.message : String(e) };\n  }\n}\n\n/** Human label for the onnx probe outcome (hides confusing module-not-found noise). */\nfunction describeOnnx(o: { ok: boolean; reason: string }): string {\n  if (o.ok) return 'loadable';\n  if (/Cannot find (module|package)/i.test(o.reason)) {\n    return 'not resolvable from CLI probe (best-effort)';\n  }\n  const r = o.reason.length > 60 ? `${o.reason.slice(0, 59)}…` : o.reason;\n  return `probe failed: ${r}`;\n}\n\nfunction fmtUptime(sec: number): string {\n  if (!Number.isFinite(sec) || sec < 0) return 'unknown';\n  if (sec < 60) return `${sec}s`;\n  if (sec < 3600) return `${Math.floor(sec / 60)}m ${sec % 60}s`;\n  return `${Math.floor(sec / 3600)}h ${Math.floor((sec % 3600) / 60)}m`;\n}\n\nfunction msg(e: unknown): string {\n  return e instanceof Error ? e.message : String(e);\n}\n\n// ---------------------------------------------------------------------------\n// Checks. Each appends to `checks`; project-dependent ones short-circuit to a\n// `warn` \"skipped\" row when the project isn't initialized (so the table still\n// accounts for them, but a pre-init `noir doctor` never exit-1s on them).\n// ---------------------------------------------------------------------------\n\nasync function checkRuntime(checks: CheckResult[]): Promise<void> {\n  checks.push({\n    name: 'runtime',\n    status: 'ok',\n    detail: `noir ${NOIR_VERSION} · node ${process.version} · ${process.platform}`,\n  });\n}\n\nfunction checkConfig(root: string): { project: ProjectInfo | undefined; result: CheckResult } {\n  const configPath = paths.config(root);\n  if (!existsSync(configPath)) {\n    return {\n      project: undefined,\n      result: {\n        name: 'config',\n        status: 'warn',\n        detail: `no .noir/config.yml in ${root} — run \\`noir init\\``,\n      },\n    };\n  }\n  try {\n    const project = loadProjectInfo(root);\n    return {\n      project,\n      result: {\n        name: 'config',\n        status: 'ok',\n        detail: `host=${project.config.host} · mode=${project.config.mode}`,\n      },\n    };\n  } catch (e) {\n    return {\n      project: undefined,\n      result: { name: 'config', status: 'fail', detail: `config parse error: ${msg(e)}` },\n    };\n  }\n}\n\nasync function checkDaemon(checks: CheckResult[]): Promise<void> {\n  const rec = readDaemonRecord();\n  if (!rec) {\n    checks.push({\n      name: 'daemon',\n      status: 'warn',\n      detail: 'not running (start with `noir daemon start`)',\n    });\n    return;\n  }\n  if (!pidAlive(rec.pid)) {\n    checks.push({\n      name: 'daemon',\n      status: 'warn',\n      detail: `stale record (pid ${rec.pid} not alive)`,\n    });\n    return;\n  }\n  try {\n    const res = await fetch(`http://127.0.0.1:${rec.port}/health`);\n    const body =\n      res.status === 200 ? ((await res.json()) as { ok?: boolean; uptimeSec?: number }) : null;\n    if (body && body.ok === true) {\n      checks.push({\n        name: 'daemon',\n        status: 'ok',\n        detail: `running (pid ${rec.pid}, port ${rec.port}, up ${fmtUptime(body.uptimeSec ?? 0)})`,\n      });\n      return;\n    }\n    checks.push({\n      name: 'daemon',\n      status: 'warn',\n      detail: `record present but /health unreachable on port ${rec.port}`,\n    });\n  } catch {\n    checks.push({\n      name: 'daemon',\n      status: 'warn',\n      detail: `record present but /health unreachable on port ${rec.port}`,\n    });\n  }\n}\n\nasync function checkNativeDeps(checks: CheckResult[]): Promise<{ vecOk: boolean }> {\n  // vecAvailability probes better-sqlite3 + sqlite-vec together (the store opens\n  // a Database and loads sqlite-vec). Dynamic import keeps the native bindings\n  // out of cold-start for every other command.\n  const { vecAvailability } = await import('@noir-ai/store');\n  const vec = vecAvailability();\n  const onnx = await probeOnnx();\n  const vecOk = vec.ok === true;\n  const onnxOk = onnx.ok === true;\n  // The sqlite side is CRITICAL (the store cannot open without it). onnx only\n  // backs local embeddings, so its absence is a warning (search → BM25-only).\n  const status: Severity = vecOk ? (onnxOk ? 'ok' : 'warn') : 'fail';\n  checks.push({\n    name: 'native deps',\n    status,\n    detail: `better-sqlite3+sqlite-vec: ${vecOk ? 'loadable' : vec.ok === false ? vec.reason : 'unknown'} · onnxruntime-node: ${describeOnnx(onnx)}`,\n  });\n  return { vecOk };\n}\n\nasync function checkStore(\n  checks: CheckResult[],\n  project: ProjectInfo | undefined,\n  root: string,\n): Promise<void> {\n  if (!project) {\n    checks.push({ name: 'store', status: 'warn', detail: 'skipped — not initialized' });\n    return;\n  }\n  const dbPath = paths.storeDb(root, project.id);\n  if (!existsSync(dbPath)) {\n    // Fresh project: the store DB is created LAZILY when the daemon first runs\n    // (or when content is indexed) — `noir init`/`create` does not pre-create it.\n    // Its absence on an otherwise-initialized project is EXPECTED, not a failure:\n    // surfacing it as `fail` would alarm every new user on their first `noir doctor`.\n    // Warn (never exit-1) with the action that materializes the store.\n    checks.push({\n      name: 'store',\n      status: 'warn',\n      detail: `not created yet — the store DB is created when the daemon first runs (\\`noir daemon start\\` or index content); expected at ${dbPath}`,\n    });\n    return;\n  }\n  const { openStore } = await import('@noir-ai/store');\n  let store: { close(): Promise<void> | void } | undefined;\n  try {\n    store = await openStore({ projectId: project.id, root, readonly: true });\n    checks.push({\n      name: 'store',\n      status: 'ok',\n      detail: `opens readonly (db: ${paths.storeDb(root, project.id)})`,\n    });\n  } catch (e) {\n    checks.push({ name: 'store', status: 'fail', detail: `open failed: ${msg(e)}` });\n  } finally {\n    if (store) {\n      try {\n        await Promise.resolve(store.close());\n      } catch {\n        /* a close error must not mask the open result */\n      }\n    }\n  }\n}\n\nfunction checkEmbedder(\n  checks: CheckResult[],\n  project: ProjectInfo | undefined,\n  vecOk: boolean,\n): void {\n  if (!project) {\n    checks.push({ name: 'embedder', status: 'warn', detail: 'skipped — not initialized' });\n    return;\n  }\n  const emb = project.config.context.embedder;\n  const kind = emb.kind;\n  const model = typeof emb.model === 'string' && emb.model.length > 0 ? emb.model : '<unset>';\n  if (kind === 'none') {\n    checks.push({\n      name: 'embedder',\n      status: 'ok',\n      detail: `kind=none (BM25-only) · dim=${emb.dim}`,\n    });\n    return;\n  }\n  if (!vecOk) {\n    // vec native layer is the embedder's hard prereq (vecs write into vec0).\n    checks.push({\n      name: 'embedder',\n      status: 'warn',\n      detail: `${kind}/${model} (${emb.dim}-dim) configured but vec native layer unavailable — search degrades to BM25`,\n    });\n    return;\n  }\n  checks.push({\n    name: 'embedder',\n    status: 'ok',\n    detail: `${kind}/${model} (${emb.dim}-dim) · vec backend available`,\n  });\n}\n\nfunction checkProvider(checks: CheckResult[], project: ProjectInfo | undefined): void {\n  if (!project) {\n    checks.push({ name: 'provider', status: 'warn', detail: 'skipped — not initialized' });\n    return;\n  }\n  // PURE projection — resolveModelConfig reads config + env-var NAMES only; it\n  // NEVER makes a live call and NEVER infers a provider from env-var presence.\n  const resolved = resolveModelConfig(project.config.model);\n  const names = Object.keys(resolved.providers);\n  if (names.length === 0) {\n    checks.push({\n      name: 'provider',\n      status: 'ok',\n      detail: 'none configured (offline mode; drafting degrades to templates)',\n    });\n    return;\n  }\n  const parts: string[] = [];\n  let missing = false;\n  for (const name of names) {\n    const p = resolved.providers[name];\n    if (!p) continue;\n    const key = p.hasKey ? 'key present' : p.apiKeyEnv ? `missing ${p.apiKeyEnv}` : 'anonymous';\n    if (!p.hasKey && p.apiKeyEnv) missing = true;\n    parts.push(`${name}/${p.model ?? '?'} (${key})`);\n  }\n  // Provider readiness is never CRITICAL — the model layer degrades to `null`\n  // (templates) when a key is missing, so this is an ok/warn signal only.\n  checks.push({\n    name: 'provider',\n    status: missing ? 'warn' : 'ok',\n    detail: parts.join(' · '),\n  });\n}\n\nfunction checkScaffoldVersion(\n  checks: CheckResult[],\n  root: string,\n): {\n  onDisk: string | null;\n  current: string;\n  drift: boolean;\n} {\n  // readScaffoldVersion never throws — it returns null on an absent/malformed\n  // stamp, so doctor keeps reporting even on a partially-initialized project.\n  const onDisk = readScaffoldVersion(root);\n  const current = CURRENT_SCAFFOLD_VERSION;\n  const drift = onDisk !== null && onDisk !== current;\n  // Drift is NEVER critical: a stale scaffold still works (the manifest entries\n  // are forward-compatible), it just means `noir init --upgrade` will run\n  // pending migrations. Absent stamp on an uninitialized project → warn (parity\n  // with the other project-dependent checks that skip-with-warn pre-init).\n  const status: Severity = onDisk === null || drift ? 'warn' : 'ok';\n  const detail =\n    onDisk === null\n      ? 'no .noir/scaffold-version stamp (run `noir init`)'\n      : drift\n        ? `on-disk ${onDisk} ≠ current ${current} (run \\`noir init --upgrade\\`)`\n        : `${onDisk} (up to date)`;\n  checks.push({ name: 'scaffold version', status, detail });\n  return { onDisk, current, drift };\n}\n\n/**\n * Soft RULES.md budget cap (R5). Mirrors the Failure-Backed Rules doctrine:\n * an over-budget RULES.md tends to accumulate stale / speculative clauses, so\n * doctor warns (NEVER fails — purely a hygiene nudge) when the file exceeds\n * the configured `lengthBudgetKb` (default 6 KB) OR a 150-line ceiling. The\n * check is honest about the three \"nothing to measure\" cases:\n *\n *   • project not initialized  → skip-warn (parity with store/embedder/provider)\n *   • RULES.md absent          → ok informational (no file = no budget problem)\n *   • RULES.md unreadable      → warn (treat like a malformed-stamp: surface it)\n *\n * Returns the structured measurement for the `--json` envelope's `data.rules`,\n * or `null` when there is nothing to measure (absent / skipped).\n */\nfunction checkRulesMdBudget(\n  checks: CheckResult[],\n  root: string,\n  project: ProjectInfo | undefined,\n): {\n  onDisk: { bytes: number; lines: number };\n  budget: { kb: number; maxLines: number };\n  over: boolean;\n} | null {\n  if (!project) {\n    checks.push({ name: 'rules budget', status: 'warn', detail: 'skipped — not initialized' });\n    return null;\n  }\n  const rulesPath = paths.rulesMd(root);\n  if (!existsSync(rulesPath)) {\n    // No RULES.md is fine — most projects don't have one yet. Informational ok\n    // so a green run stays green without forcing a file creation.\n    checks.push({\n      name: 'rules budget',\n      status: 'ok',\n      detail: 'no .noir/rules/RULES.md',\n    });\n    return null;\n  }\n  // Read + measure. A read/decode failure surfaces as a warn (parallel to the\n  // malformed-stamp handling in checkScaffoldVersion): the doctor keeps\n  // reporting rather than crashing, and the user sees a clear hint.\n  let content: string;\n  try {\n    content = readFileSync(rulesPath, 'utf8');\n  } catch (e) {\n    checks.push({\n      name: 'rules budget',\n      status: 'warn',\n      detail: `RULES.md unreadable: ${msg(e)}`,\n    });\n    return null;\n  }\n  // bytes = UTF-8 file size on disk (the natural unit for a KB budget). lines\n  // uses wc-style counting: count of '\\n' chars, +1 if the last line has no\n  // trailing newline; 0 only for an empty file.\n  const bytes = Buffer.byteLength(content, 'utf8');\n  const lineCount =\n    content.length === 0 ? 0 : content.split('\\n').length - (content.endsWith('\\n') ? 1 : 0);\n  const lengthBudgetKb = project.config.rules.lengthBudgetKb;\n  const budgetBytes = lengthBudgetKb * 1024;\n  const maxLines = 150;\n  const overBytes = bytes > budgetBytes;\n  const overLines = lineCount > maxLines;\n  const over = overBytes || overLines;\n  const status: Severity = over ? 'warn' : 'ok';\n  const kb = (n: number): string => (n / 1024).toFixed(1);\n  const detail = over\n    ? `OVER: ${kb(bytes)} KB / ${lengthBudgetKb} KB · ${lineCount}/${maxLines} lines — trim RULES.md (failure-backed clauses only) or raise rules.lengthBudgetKb`\n    : `${kb(bytes)} KB / ${lengthBudgetKb} KB · ${lineCount}/${maxLines} lines (within budget)`;\n  checks.push({ name: 'rules budget', status, detail });\n  return {\n    onDisk: { bytes, lines: lineCount },\n    budget: { kb: lengthBudgetKb, maxLines },\n    over,\n  };\n}\n\nfunction summarize(checks: CheckResult[]): DoctorPayload['summary'] {\n  let ok = 0;\n  let warnN = 0;\n  let fail = 0;\n  for (const c of checks) {\n    if (c.status === 'ok') ok++;\n    else if (c.status === 'warn') warnN++;\n    else fail++;\n  }\n  return { ok, warn: warnN, fail };\n}\n\n/**\n * S10 — host-artifacts presence check. Reports the ACTIVE host (read from\n * `project.config.host`) + verifies the host's primary emission paths exist on\n * disk. The expected set mirrors `buildHostArtifacts` in @noir-ai/create:\n *\n *   - AGENTS.md for the hosts that emit it (agents-md/cursor/opencode — their\n *     native context surface IS AGENTS.md). claude/gemini do NOT emit AGENTS.md\n *     (their CLAUDE.md/GEMINI.md @-import the canonical .noir/ sources; a root\n *     AGENTS.md would double-import them — fix-wave I1 removed that delta).\n *   - The host's native context file when distinct from AGENTS.md\n *     (claude → CLAUDE.md; gemini → GEMINI.md; agents-md/cursor/opencode →\n *     none, AGENTS.md IS the context). Cursor's working-rules ride AGENTS.md's\n *     `@.noir/rules/RULES.md` import — NO separate `.cursor/rules/noir-contract.mdc`\n *     host-rules pointer (it was `noir-`-prefixed and the C3 cursor flat-skill\n *     prune deleted it on every sync).\n *   - The host's MCP config (.mcp.json / .gemini/mcp.json / .cursor/mcp.json /\n *     opencode.json).\n *\n * Severity is `ok` when every expected path exists, `warn` when any are\n * missing (NEVER `fail` — a missing host artifact is restored by `noir sync`,\n * not a critical product failure). Mirrors the policy of the other\n * presence/projection checks (scaffold-version drift, RULES.md budget): warn,\n * surface the remediation, never block.\n *\n * Returns the structured payload for the `--json` envelope's `data.host`, or\n * `null` when the project isn't initialized (no resolved host).\n */\nfunction checkHostArtifacts(\n  checks: CheckResult[],\n  root: string,\n  project: ProjectInfo | undefined,\n): { active: HostId; expected: string[]; missing: string[] } | null {\n  if (!project) {\n    checks.push({ name: 'host artifacts', status: 'warn', detail: 'skipped — not initialized' });\n    return null;\n  }\n  const host = project.config.host;\n  const adapter = resolveAdapter(host);\n  const ectx = { root };\n\n  // Build the expected repo-relative path list. Mirrors buildHostArtifacts in\n  // @noir-ai/create so a missing row maps 1:1 to a manifest entry the user can\n  // restore with `noir sync`. Kept inline (not imported) so doctor stays a\n  // READ-ONLY health probe with zero write-side coupling.\n  const expected: string[] = [];\n  // AGENTS.md — only for hosts whose emitContext IS the AGENTS.md (I1: claude/\n  // gemini skip it — their native context file already covers .noir/).\n  const emitsAgentsMd = host === 'agents-md' || host === 'cursor' || host === 'opencode';\n  if (emitsAgentsMd) {\n    expected.push(relOr(adapter.agentsMdPath?.(ectx) ?? 'AGENTS.md', root));\n  }\n  // Host-native context file (when distinct from AGENTS.md).\n  if (host === 'claude') expected.push('CLAUDE.md');\n  else if (host === 'gemini') expected.push('GEMINI.md');\n  // Cursor has NO separate host-rules .mdc — the prior `noir-contract.mdc`\n  // pointer was REMOVED (it was `noir-`-prefixed, so the C3 cursor flat-skill\n  // prune in emitSkillsToDir deleted it on every noir init/create/sync).\n  // Cursor's rules ride AGENTS.md's `@.noir/rules/RULES.md` import instead.\n  // Host MCP config (fallback .mcp.json for claude/agents-md).\n  expected.push(relOr(adapter.mcpConfigPath?.(ectx) ?? '.mcp.json', root));\n\n  const missing = expected.filter((p) => !existsSync(joinRoot(root, p)));\n  const status: Severity = missing.length === 0 ? 'ok' : 'warn';\n  const detail =\n    missing.length === 0\n      ? `host=${host} · all ${expected.length} primary artifacts present`\n      : `host=${host} · missing ${missing.join(', ')} (run \\`noir sync\\` to restore)`;\n  checks.push({ name: 'host artifacts', status, detail });\n  return { active: host, expected, missing };\n}\n\n// ---------------------------------------------------------------------------\n// SP-A — nested-`.noir` detection (read-only).\n// ---------------------------------------------------------------------------\n\n/**\n * Detects the fingerprint of a `noir init`/`create` run from INSIDE `.noir/`\n * (now PREVENTED by `assertSafeRoot` in @noir-ai/create, but legacy/already-\n * nested projects still carry the damage): a nested `<root>/.noir/.noir/` store\n * and/or host artifacts emitted into `.noir/` as if it were a project root\n * (`.noir/CLAUDE.md`, `.noir/.mcp.json`, `.noir/.claude/`). Read-only `warn` —\n * doctor never mutates; remediation is manual removal (a future follow-up\n * slice can automate it). Never `fail`: a nested store wastes space + confuses\n * tooling but does not break the outer project.\n */\nexport function checkNestedNoir(\n  checks: CheckResult[],\n  root: string,\n): { detected: boolean; paths: string[] } {\n  const candidates = ['.noir/.noir', '.noir/CLAUDE.md', '.noir/.mcp.json', '.noir/.claude'];\n  const found = candidates.filter((rel) => existsSync(join(root, rel)));\n  const detected = found.length > 0;\n  checks.push({\n    name: 'nested .noir',\n    status: detected ? 'warn' : 'ok',\n    detail: detected\n      ? `nested Noir artifacts inside .noir/ (${found.join(', ')}) — likely from running \\`noir init\\` inside .noir/. Remove them; the real project is at ${root}.`\n      : 'no nested .noir/ artifacts',\n  });\n  return { detected, paths: found };\n}\n\n// ---------------------------------------------------------------------------\n// SP-C deferred — semantic duplicate detection (`--dedup`; loads the embedder).\n// ---------------------------------------------------------------------------\n\n/** Local embedder shape (@noir-ai/context's `EmbedFn`). */\ntype EmbedLike = (text: string) => Promise<Float32Array>;\n\n/**\n * Collect dedup candidates: the host context files that exist at the root\n * (CLAUDE.md / AGENTS.md / GEMINI.md — the hand-mirrored-overlap case) plus\n * `.noir/rules/RULES.md`. `.noir/NOIR.md` is EXCLUDED because host context\n * files `@import` it by design (their similarity is intentional, not a dup).\n */\nexport function collectDedupCandidates(root: string): { path: string; text: string }[] {\n  const rels = ['CLAUDE.md', 'AGENTS.md', 'GEMINI.md', '.noir/rules/RULES.md'];\n  const out: { path: string; text: string }[] = [];\n  for (const rel of rels) {\n    const abs = join(root, rel);\n    if (!existsSync(abs)) continue;\n    let text: string;\n    try {\n      text = readFileSync(abs, 'utf8');\n    } catch {\n      continue;\n    }\n    if (text.trim().length === 0) continue;\n    out.push({ path: rel, text });\n  }\n  return out;\n}\n\n/**\n * `noir doctor --dedup`: embed the host-context + RULES.md candidates and\n * report near-duplicate pairs (cosine ≥ 0.90). The ONLY mechanism that catches\n * cross-file SEMANTIC overlap (e.g. a hand-mirrored CLAUDE.md ≈ AGENTS.md) —\n * exact content-hash cannot. Opt-in so a default `noir doctor` never pays the\n * embedder-load cost; degrades to a `warn` skip when the embedder is\n * unavailable (kind=none / native layer missing). `opts.embed` is a testability\n * seam — tests inject a deterministic fake; production omits it and the local\n * embedder is lazy-loaded via `@noir-ai/context`.\n */\nexport async function checkSemanticDupDoctor(\n  checks: CheckResult[],\n  root: string,\n  project: ProjectInfo | undefined,\n  opts: { embed?: EmbedLike } = {},\n): Promise<void> {\n  if (!project) {\n    checks.push({ name: 'semantic dup', status: 'warn', detail: 'skipped — not initialized' });\n    return;\n  }\n  const candidates = collectDedupCandidates(root);\n  if (candidates.length < 2) {\n    checks.push({\n      name: 'semantic dup',\n      status: 'ok',\n      detail: `${candidates.length} candidate file(s); nothing to compare`,\n    });\n    return;\n  }\n  const ctx = await import('@noir-ai/context');\n  let embed: EmbedLike | undefined = opts.embed;\n  if (!embed) {\n    const cfg = ctx.resolveEmbedderConfig(project.config.context);\n    if (cfg.kind === 'none') {\n      checks.push({\n        name: 'semantic dup',\n        status: 'warn',\n        detail: 'embedder kind=none — set context.embedder.kind=local to enable semantic dedup',\n      });\n      return;\n    }\n    try {\n      embed = ctx.createEmbedFn(cfg).embed as EmbedLike;\n    } catch (e) {\n      checks.push({\n        name: 'semantic dup',\n        status: 'warn',\n        detail: `embedder unavailable — skipped (${msg(e)})`,\n      });\n      return;\n    }\n  }\n  if (!embed) return;\n  const pairs = await ctx.findSemanticDuplicates(candidates, embed, ctx.DEFAULT_DUP_THRESHOLD);\n  checks.push({\n    name: 'semantic dup',\n    status: pairs.length > 0 ? 'warn' : 'ok',\n    detail:\n      pairs.length === 0\n        ? `no near-duplicates across ${candidates.length} file(s)`\n        : `${pairs.length} near-duplicate pair${pairs.length === 1 ? '' : 's'}: ${pairs\n            .map((p) => `${p.a}≈${p.b} (${p.similarity.toFixed(2)})`)\n            .join('; ')}`,\n  });\n}\n\n// ---------------------------------------------------------------------------\n// S11 — publish-readiness check (advisory, repo-developer-facing).\n// ---------------------------------------------------------------------------\n\n/**\n * Resolve the workspace `packages/` directory from the CLI's own location —\n * walk up from `import.meta.url` to the nearest `package.json` named\n * `@noir-ai/cli`, then return its PARENT dir (the `packages/` root) IF that\n * dir's parent carries the monorepo marker (`pnpm-workspace.yaml`). Returns\n * `null` when not running from a monorepo checkout (a global `npm install -g`\n * has no `packages/*` workspace to validate → the publish check skips).\n *\n * The walk is robust across layouts: source (`packages/cli/src/commands/`),\n * built (`packages/cli/dist/`), and bundled-chunk (`packages/cli/dist/`) all\n * walk up to `packages/cli/package.json`. In a global install the same walk\n * lands on `node_modules/@noir-ai/cli/package.json`, whose parent\n * (`node_modules/@noir-ai/`) has NO `pnpm-workspace.yaml` parent → null.\n */\nfunction resolveWorkspacePackagesDir(): string | null {\n  let here = dirname(fileURLToPath(import.meta.url));\n  // Bound the walk so a pathological layout never loops the filesystem.\n  for (let i = 0; i < 8; i++) {\n    const pkgPath = join(here, 'package.json');\n    if (existsSync(pkgPath)) {\n      try {\n        const pkg = JSON.parse(readFileSync(pkgPath, 'utf8')) as { name?: string };\n        if (pkg.name === '@noir-ai/cli') {\n          // `here` is the cli package dir; `dirname(here)` is `packages/`.\n          const packagesDir = dirname(here);\n          // Monorepo gate: the repo root (`dirname(packagesDir)`) carries\n          // `pnpm-workspace.yaml`. A global install fails this gate.\n          if (existsSync(join(dirname(packagesDir), 'pnpm-workspace.yaml'))) {\n            return packagesDir;\n          }\n          return null;\n        }\n      } catch {\n        // Malformed package.json — keep walking.\n      }\n    }\n    const parent = dirname(here);\n    if (parent === here) break; // filesystem root\n    here = parent;\n  }\n  return null;\n}\n\n/**\n * Permissive semver-ish regex for the advisory check. Accepts release and\n * pre-release/build forms (`1.0.0`, `1.1.0-beta.1`, `1.2.0+build.4`). Strict\n * enough to catch the obvious foot-guns (a git SHA, a literal \"latest\", a\n * missing patch) without pulling in the `semver` package for a warn-level\n * check. `npm publish` itself enforces rigor at pack time.\n */\nconst SEMVER_ISH = /^\\d+\\.\\d+\\.\\d+(?:-[0-9A-Za-z.-]+)?(?:\\+[0-9A-Za-z.-]+)?$/;\n\n/** Best-effort `npm pack --dry-run` on the cli package — read-only (it does\n *  NOT write the tarball). Returns `{ fileCount, distIncluded }` parsed from\n *  npm's notice output, or `{ error }` when npm is unavailable / the pack\n *  fails. Gated on npm being on PATH (the spec's expensive-but-optional leg):\n *  we probe `npm --version` first and skip-with-note if it isn't resolvable. */\nfunction npmPackDryRun(\n  cliPkgDir: string,\n): { fileCount: number | null; distIncluded: boolean | null } | { error: string } {\n  // Probe npm availability first (cheap). shell:true so Windows finds npm.cmd.\n  const probe = spawnSync('npm', ['--version'], { encoding: 'utf8', shell: true });\n  if (probe.status !== 0 || probe.error) {\n    return { error: probe.error ? probe.error.message : 'npm not on PATH' };\n  }\n  // `npm pack --dry-run` lists the tarball contents without writing the file.\n  // It IS read-only (npm's own docs: \"--dry-run ... does not write anything\").\n  const res = spawnSync('npm', ['pack', '--dry-run'], {\n    cwd: cliPkgDir,\n    encoding: 'utf8',\n    shell: true,\n  });\n  if (res.status !== 0 || res.error) {\n    return { error: res.error ? res.error.message : `npm pack exited ${res.status ?? '?'}` };\n  }\n  const out = `${res.stdout ?? ''}\\n${res.stderr ?? ''}`;\n  // `npm notice total files: 42` — the canonical summary line.\n  const totalMatch = out.match(/total files:\\s*(\\d+)/i);\n  const fileCount = totalMatch?.[1] ? Number.parseInt(totalMatch[1], 10) : null;\n  // `dist/` appears in the tarball contents (`npm notice <size> dist/<file>`).\n  const distIncluded = /\\bdist\\//.test(out);\n  return { fileCount, distIncluded };\n}\n\n/**\n * S11 publish-readiness check. For every workspace `package.json` under\n * `packagesDir`, validate publishability:\n *   - `name` starts with `@noir-ai/`\n *   - `version` matches {@link SEMVER_ISH}\n *   - `files` is a non-empty array\n *   - the cli package has a `bin` field\n *\n * Optionally runs `npm pack --dry-run` on the cli package (best-effort, gated\n * on npm being available) to report the file count + confirm `dist/` ships.\n *\n * Severity is ALWAYS `ok` or `warn` — NEVER `fail`: a missing/odd package.json\n * field does not break the local install (this is an advisory nudge to repo\n * developers, not a project-facing health check). The check runs ALWAYS (it\n * produces a row in every doctor report) but returns `null` from\n * `data.publish` when not running from a monorepo (`packagesDir === null`).\n */\nexport function checkPublish(\n  checks: CheckResult[],\n  packagesDir: string | null,\n  opts: { skipNpmPack?: boolean } = {},\n): { checked: number; issues: string[] } | null {\n  if (packagesDir === null) {\n    checks.push({\n      name: 'publish',\n      status: 'ok',\n      detail: 'skipped — not a monorepo checkout (no packages/* workspace)',\n    });\n    return null;\n  }\n  // Discover workspace package.json files (depth-1 dirs only — no glob dep).\n  let entries: string[] = [];\n  try {\n    entries = readdirSync(packagesDir, { withFileTypes: true })\n      .filter((d) => d.isDirectory())\n      .map((d) => d.name);\n  } catch (e) {\n    checks.push({\n      name: 'publish',\n      status: 'warn',\n      detail: `could not read ${packagesDir}: ${msg(e)}`,\n    });\n    return { checked: 0, issues: [`unreadable packages dir: ${msg(e)}`] };\n  }\n\n  const issues: string[] = [];\n  let checked = 0;\n  let cliDir: string | null = null;\n  for (const name of entries) {\n    const pkgPath = join(packagesDir, name, 'package.json');\n    if (!existsSync(pkgPath)) continue;\n    let pkg: Record<string, unknown>;\n    try {\n      pkg = JSON.parse(readFileSync(pkgPath, 'utf8')) as Record<string, unknown>;\n    } catch (e) {\n      issues.push(`${name}/package.json: unparseable (${msg(e)})`);\n      checked++;\n      continue;\n    }\n    checked++;\n    const pkgName = typeof pkg.name === 'string' ? pkg.name : '';\n    if (!pkgName.startsWith('@noir-ai/')) {\n      issues.push(`${name}/package.json: name '${pkgName}' is not @noir-ai/*`);\n    }\n    const version = typeof pkg.version === 'string' ? pkg.version : '';\n    if (!SEMVER_ISH.test(version)) {\n      issues.push(`${name}/package.json: version '${version}' is not semver`);\n    }\n    if (!Array.isArray(pkg.files) || pkg.files.length === 0) {\n      issues.push(`${name}/package.json: files missing or empty`);\n    }\n    if (pkgName === '@noir-ai/cli') {\n      if (pkg.bin == null || (typeof pkg.bin === 'object' && Object.keys(pkg.bin).length === 0)) {\n        issues.push(`${name}/package.json: bin missing (cli package must declare a bin)`);\n      }\n      cliDir = join(packagesDir, name);\n    }\n  }\n\n  // Best-effort npm pack --dry-run on the cli package. Gated on npm being\n  // available; a failure here is surfaced in the detail but does NOT add an\n  // issue (it is environmental, not a package.json defect). `skipNpmPack` is a\n  // testability seam — synthetic test fixtures have no real `dist/`, so the\n  // dist-absent signal would otherwise pollute the package.json-validation\n  // assertions. Production (`doctor()`) leaves it unset.\n  let packNote = '';\n  if (cliDir && opts.skipNpmPack !== true) {\n    const pack = npmPackDryRun(cliDir);\n    if ('error' in pack) {\n      packNote = ` · npm pack skipped (${pack.error})`;\n    } else {\n      const count = pack.fileCount == null ? '?' : String(pack.fileCount);\n      const dist = pack.distIncluded ? 'dist/ included' : 'dist/ NOT in tarball';\n      packNote = ` · npm pack: ${count} files, ${dist}`;\n      if (pack.distIncluded === false) {\n        issues.push('cli npm pack --dry-run: dist/ absent from the tarball');\n      }\n    }\n  }\n\n  const status: Severity = issues.length > 0 ? 'warn' : 'ok';\n  const detail =\n    issues.length === 0\n      ? `${checked}/${entries.length} packages publish-ready${packNote}`\n      : `${issues.length} issue${issues.length === 1 ? '' : 's'} across ${checked} package${checked === 1 ? '' : 's'}${packNote}`;\n  checks.push({ name: 'publish', status, detail });\n  return { checked, issues };\n}\n\n/** Repo-relative POSIX form of `abs` under `root`. Defensive (N2): rejects\n *  paths that escape `root` — mirrors `hostRel` in @noir-ai/create/manifest.ts.\n *  A future adapter that returns a stray path fails loudly here instead of\n *  producing a misleading \"missing\" row for a path doctor would never probe.\n *  Relative literals (e.g. `'AGENTS.md'`, `'.mcp.json'`) pass through unchanged\n *  AFTER the `..`-escape check so a buggy literal could not exfiltrate either. */\nfunction relOr(abs: string, root: string): string {\n  const posix = abs.replace(/\\\\/g, '/');\n  if (posix.startsWith('/')) {\n    const rel = relative(root, abs).replace(/\\\\/g, '/');\n    if (rel.length === 0 || rel.startsWith('..') || rel.startsWith('/')) {\n      throw new Error(`doctor: host path '${abs}' is not under root '${root}'`);\n    }\n    return rel;\n  }\n  // Already-relative literal: still reject `..` segments (a `../etc/passwd`\n  // literal from a buggy adapter must not silently pass through).\n  if (posix.split('/').some((seg) => seg === '..')) {\n    throw new Error(`doctor: host path '${abs}' escapes root '${root}'`);\n  }\n  return posix;\n}\n\n/** Join `root` with a repo-relative POSIX path for an existsSync probe. */\nfunction joinRoot(root: string, relPath: string): string {\n  return `${root}/${relPath}`;\n}\n\nfunction renderHuman(payload: DoctorPayload, opts: CliOptions): void {\n  log(\n    `noir doctor — ${payload.checks.length} check${payload.checks.length === 1 ? '' : 's'}`,\n    opts,\n  );\n  table(\n    payload.checks.map((c) => ({\n      Check: c.name,\n      Status: c.status.toUpperCase(),\n      Detail: c.detail,\n    })),\n    ['Check', 'Status', 'Detail'],\n    opts,\n  );\n  const { ok, warn: warnN, fail } = payload.summary;\n  if (fail > 0) {\n    err(\n      `${fail} critical check${fail === 1 ? '' : 's'} failed (${warnN} warning${warnN === 1 ? '' : 's'}, ${ok} ok)`,\n      opts,\n    );\n  } else if (warnN > 0) {\n    warn(`all critical checks passed (${warnN} warning${warnN === 1 ? '' : 's'}, ${ok} ok)`, opts);\n  } else {\n    success(`all ${ok} check${ok === 1 ? '' : 's'} passed`, opts);\n  }\n}\n\n/**\n * `noir doctor`: run all checks, render, and exit.\n *\n * Under `--json` writes `{ok:true, data: DoctorPayload}` to stdout (always —\n * the command produced a diagnosis). The exit code carries health: 0 when no\n * check failed, 1 when any CRITICAL (`fail`) check is unhealthy.\n */\nexport async function doctor(opts: DoctorOptions = {}): Promise<void> {\n  const root = process.cwd();\n  const checks: CheckResult[] = [];\n\n  await checkRuntime(checks);\n  const { project, result: configResult } = checkConfig(root);\n  checks.push(configResult);\n  await checkDaemon(checks);\n  const { vecOk } = await checkNativeDeps(checks);\n  await checkStore(checks, project, root);\n  checkEmbedder(checks, project, vecOk);\n  checkProvider(checks, project);\n  const scaffold = checkScaffoldVersion(checks, root);\n  const rules = checkRulesMdBudget(checks, root, project);\n  const host = checkHostArtifacts(checks, root, project);\n  checkNestedNoir(checks, root);\n  if (opts.dedup === true) {\n    await checkSemanticDupDoctor(checks, root, project);\n  }\n  const publish = checkPublish(checks, resolveWorkspacePackagesDir());\n\n  const summary = summarize(checks);\n  const payload: DoctorPayload = {\n    noir: NOIR_VERSION,\n    checks,\n    summary,\n    scaffold,\n    rules,\n    host,\n    publish,\n  };\n\n  if (opts.json === true) {\n    process.stdout.write(`${JSON.stringify({ ok: true, data: payload })}\\n`);\n  } else {\n    renderHuman(payload, opts);\n  }\n\n  if (summary.fail > 0) {\n    // Under --json the data envelope is already on stdout; throw with an empty\n    // message so handleError sets exitCode=1 without a redundant stderr line.\n    // Under human mode the summary line above already named the failures.\n    throw new NoirCliError(\n      EXIT.ERROR,\n      opts.json === true ? '' : `noir doctor: ${summary.fail} critical check(s) failed`,\n    );\n  }\n}\n","import { loadProjectInfo } from '@noir-ai/core';\nimport { ensureDaemonRunning, startStdioServer } from '@noir-ai/daemon';\n\nexport async function serve(opts: { stdio: boolean }): Promise<void> {\n  const project = loadProjectInfo(process.cwd());\n  if (opts.stdio) {\n    await startStdioServer({ project, transport: 'stdio', daemon: false });\n    return; // stdio server runs until stdin closes\n  }\n  // Prefer the shared daemon; on failure fall back to in-process stdio so Noir\n  // keeps working even when the daemon cannot start (FS-degradation path).\n  try {\n    const { url } = await ensureDaemonRunning({\n      project,\n      idleTimeoutSec: project.config.daemon.idleTimeoutSec,\n    });\n    process.stderr.write(\n      `Noir daemon available at ${url}. (For HTTP clients, use this URL in .mcp.json.)\\n`,\n    );\n  } catch (err) {\n    process.stderr.write(\n      `Noir daemon unavailable (${err instanceof Error ? err.message : String(err)}); falling back to stdio.\\n`,\n    );\n    await startStdioServer({ project, transport: 'stdio', daemon: false });\n  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