@noesis-brain/mcp-server 2.1.2 → 2.1.5

package/dist/agent/runner.d.ts

@@ -20,6 +20,16 @@ export interface AgentConfig {
     fake: boolean;
 }
 export declare function resolveAgentConfig(): AgentConfig;
+interface JobPayload {
+    prompt?: string;
+    system?: string;
+    allowedTools?: string[];
+    maxTurns?: number;
+    images?: Array<{
+        mimeType: string;
+        data: string;
+    }>;
+}
 /** Drop anything the server asked for that is not on the read-only allowlist. */
 export declare function clampAllowedTools(raw: unknown): string[];
 /** Clamp the server-requested turn budget into a sane range. */
@@ -30,6 +40,138 @@ export declare function clampMaxTurns(raw: unknown): number;
  * package.json rather than hard-coded, so a release cannot forget to bump it.
  */
 export declare function agentVersion(): string;
+/**
+ * One Anthropic content block — a plain-text piece or a base64 image, the same
+ * shape the SSE path's formatClaudeContent() already builds (main repo,
+ * services/chatContextComposer.ts). Reimplemented here rather than imported: this
+ * submodule cannot import from the main repo it is published independently of.
+ */
+type ContentBlock = {
+    type: 'text';
+    text: string;
+} | {
+    type: 'image';
+    source: {
+        type: 'base64';
+        media_type: string;
+        data: string;
+    };
+};
+/**
+ * `sdk.query()`'s `prompt` accepts a plain string OR an AsyncIterable<SDKUserMessage>
+ * (verified directly against the shipped SDK, @anthropic-ai/claude-agent-sdk@0.1.77,
+ * sdk.mjs) — the string branch is sugar that constructs exactly this one-message shape
+ * itself before writing it to the transport, and the iterable branch goes through the
+ * identical Query.streamInput(), which writes each yielded message then closes stdin
+ * once the iterable ends. A generator yielding one message and returning is therefore
+ * not a workaround; it is what the SDK already does for a plain string, generalized to
+ * carry image content — which the string form has no structural room for.
+ */
+export declare function singleUserMessage(content: ContentBlock[]): AsyncGenerator<unknown>;
+/** Images first, text last — matches formatClaudeContent()'s ordering. */
+export declare function buildImageContent(prompt: string, images: Array<{
+    mimeType: string;
+    data: string;
+}>): ContentBlock[];
+/**
+ * What `prompt` executeJob passes into sdk.query() — extracted so the branch
+ * decision (and its two shapes) is directly testable without mocking the dynamic
+ * SDK import. Kept conditional on `images` rather than switching every job onto
+ * the generator form, to minimize the diff's blast radius on the far more common
+ * text-only case even though the underlying SDK mechanism is confirmed equivalent.
+ */
+export declare function buildSdkPrompt(prompt: string, images: Array<{
+    mimeType: string;
+    data: string;
+}> | undefined): string | AsyncGenerator<unknown>;
+/** What the SDK expects back from a canUseTool decision. */
+type PermissionDecision = {
+    behavior: 'allow';
+    updatedInput: Record<string, unknown>;
+} | {
+    behavior: 'deny';
+    message: string;
+};
+/**
+ * SECOND, INDEPENDENT LAYER on the tool boundary.
+ *
+ * `tools: []` below is the primary control, but it works by way of the CLI's `--tools ""`
+ * flag, whose handling lives in a minified `cli.js` we cannot audit. This callback is a
+ * gate we own outright: the SDK routes every permission request through it
+ * (`--permission-prompt-tool stdio`), and the request carries an `agentID`, so calls made
+ * by a spawned `Task` SUBAGENT are covered too — which matters, because a subagent, not
+ * the main loop, did the file reading in the 2026-08-14 incident.
+ *
+ * Deliberately reuses ALLOWED_TOOLS so the daemon has ONE definition of what may run.
+ *
+ * DO NOT DELETE THIS AS DEAD CODE. It is the ONLY daemon-owned control over MCP tools.
+ * `tools: []` governs the SDK's BUILT-IN set and nothing else; the Noesis MCP server we
+ * spawn registers ~55 tools, and their definitions are not filtered by `allowedTools`, so
+ * the model can see and attempt every one of them — including `pull_notes`, which writes
+ * to an arbitrary local path, plus `add_root`, `sync_notes`, `trash_note`, `move_note`.
+ * For those, this callback is the whole boundary.
+ *
+ * MEASURED (30 runs, 2026-08-15), correcting an earlier comment that said the opposite:
+ * the gate DOES fire — it denied `mcp__noesis__list_roots` and `mcp__noesis__list_codebases`
+ * in real traffic, and the model received `is_error` results naming the refusal. An earlier
+ * 2-job sample saw zero firings and wrongly concluded the gate was inert; a permission tool
+ * is simply not consulted for calls that are already pre-approved, and that sample happened
+ * to exercise only pre-approved tools.
+ *
+ * KNOWN GAP, stated rather than glossed: the SDK's cache-warming sidechain
+ * (`isSidechain: true`) is a real model turn that emits genuine `Bash`/`Glob` calls against
+ * the daemon's cwd, with only the RESULT stubbed. `tools: []` does not reach it and this
+ * callback is never consulted there. Nothing executes — but that is Claude Code internal
+ * behaviour we neither own nor test, which is why the daemon is rooted at a neutral cwd
+ * (`scripts/start-agent.sh`), so the warmup probes an empty directory, not a source tree.
+ */
+export declare function buildCanUseTool(
+/**
+ * The tools permitted for THIS job — i.e. the output of `clampAllowedTools`, not the
+ * module-wide `ALLOWED_TOOLS`. Required, deliberately: an earlier version closed over
+ * `ALLOWED_TOOLS` and so turned a per-job clamp into a union. `clampAllowedTools`
+ * narrows to (what the server asked for ∩ ALLOWED_TOOLS); the gate then re-allowed all
+ * four regardless, so a job clamped to `get_note` could still execute `search_semantic`.
+ * The sets happen to coincide for chat today, which is exactly why it would have gone
+ * unnoticed until the first job kind with a narrower allowlist.
+ */
+permitted: Iterable<string>, onDecision?: (toolName: string, allowed: boolean, agentID?: string) => void): (toolName: string, input?: unknown, ctx?: {
+    agentID?: string;
+}) => Promise<PermissionDecision>;
+/**
+ * The `options` object handed to sdk.query() — extracted, like buildSdkPrompt above, so
+ * the tool boundary is asserted by a test instead of resting on a comment. `tools: []`
+ * is the security-relevant field: see the note at its assignment. Takes the MCP-server
+ * factory as an argument so a test can supply a stub instead of a real spawn config.
+ */
+export declare function buildQueryOptions(payload: JobPayload, mcpServersFor: () => Record<string, unknown>): Record<string, unknown>;
+/** The prompt text for a job, with the fallback used when a payload carries none. */
+export declare function resolveJobPrompt(payload: JobPayload, kindLabel: string): string;
+/** The minimum of the Agent SDK this daemon uses — enough for a test to substitute a fake. */
+export interface SdkLike {
+    query(args: {
+        prompt: unknown;
+        options: Record<string, unknown>;
+    }): AsyncIterable<unknown>;
+}
+/**
+ * The ONE place the SDK is invoked. Exported so a test can pass a fake `sdk` and assert
+ * what actually reaches `query()`.
+ *
+ * This exists because of a real gap: the suite pinned `buildQueryOptions` with a
+ * power-set mutation battery, but NOTHING pinned the call. Restoring the pre-fix inline
+ * options literal here — deleting `tools: []` and `canUseTool` outright — reverted the
+ * entire tool boundary with all 79 tests still green. The builder being correct is
+ * worthless if the caller stops using it, so both the seam below and the source-fitness
+ * test in `agentToolClamp.test.ts` guard this.
+ */
+export declare function runSdkQuery(sdk: SdkLike, payload: JobPayload, kindLabel: string, mcpServersFor: () => Record<string, unknown>): AsyncIterable<unknown>;
+/**
+ * The daemon's startup banner line — pulled out of runAgentDaemon() so the printed
+ * version string is directly unit-testable without starting the real (infinite) loop.
+ */
+export declare function startupBanner(cfg: AgentConfig): string;
 /** Run the daemon loop until aborted. */
 export declare function runAgentDaemon(cfg: AgentConfig, signal?: AbortSignal): Promise<void>;
+export {};
 //# sourceMappingURL=runner.d.ts.map

package/dist/agent/runner.d.ts.map

@@ -1 +1 @@
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package/dist/agent/runner.js

@@ -168,13 +168,162 @@ class EventSink {
             clearInterval(this.keepaliveTimer);
     }
 }
+/**
+ * `sdk.query()`'s `prompt` accepts a plain string OR an AsyncIterable<SDKUserMessage>
+ * (verified directly against the shipped SDK, @anthropic-ai/claude-agent-sdk@0.1.77,
+ * sdk.mjs) — the string branch is sugar that constructs exactly this one-message shape
+ * itself before writing it to the transport, and the iterable branch goes through the
+ * identical Query.streamInput(), which writes each yielded message then closes stdin
+ * once the iterable ends. A generator yielding one message and returning is therefore
+ * not a workaround; it is what the SDK already does for a plain string, generalized to
+ * carry image content — which the string form has no structural room for.
+ */
+export async function* singleUserMessage(content) {
+    yield {
+        type: 'user',
+        session_id: '',
+        message: { role: 'user', content },
+        parent_tool_use_id: null,
+    };
+}
+/** Images first, text last — matches formatClaudeContent()'s ordering. */
+export function buildImageContent(prompt, images) {
+    const blocks = images.map((img) => ({
+        type: 'image',
+        source: { type: 'base64', media_type: img.mimeType, data: img.data },
+    }));
+    // Claude requires at least one content block; an image-only send still needs text.
+    blocks.push({ type: 'text', text: prompt || '(Image attached)' });
+    return blocks;
+}
+/**
+ * What `prompt` executeJob passes into sdk.query() — extracted so the branch
+ * decision (and its two shapes) is directly testable without mocking the dynamic
+ * SDK import. Kept conditional on `images` rather than switching every job onto
+ * the generator form, to minimize the diff's blast radius on the far more common
+ * text-only case even though the underlying SDK mechanism is confirmed equivalent.
+ */
+export function buildSdkPrompt(prompt, images) {
+    if (images && images.length > 0)
+        return singleUserMessage(buildImageContent(prompt, images));
+    return prompt;
+}
+/**
+ * SECOND, INDEPENDENT LAYER on the tool boundary.
+ *
+ * `tools: []` below is the primary control, but it works by way of the CLI's `--tools ""`
+ * flag, whose handling lives in a minified `cli.js` we cannot audit. This callback is a
+ * gate we own outright: the SDK routes every permission request through it
+ * (`--permission-prompt-tool stdio`), and the request carries an `agentID`, so calls made
+ * by a spawned `Task` SUBAGENT are covered too — which matters, because a subagent, not
+ * the main loop, did the file reading in the 2026-08-14 incident.
+ *
+ * Deliberately reuses ALLOWED_TOOLS so the daemon has ONE definition of what may run.
+ *
+ * DO NOT DELETE THIS AS DEAD CODE. It is the ONLY daemon-owned control over MCP tools.
+ * `tools: []` governs the SDK's BUILT-IN set and nothing else; the Noesis MCP server we
+ * spawn registers ~55 tools, and their definitions are not filtered by `allowedTools`, so
+ * the model can see and attempt every one of them — including `pull_notes`, which writes
+ * to an arbitrary local path, plus `add_root`, `sync_notes`, `trash_note`, `move_note`.
+ * For those, this callback is the whole boundary.
+ *
+ * MEASURED (30 runs, 2026-08-15), correcting an earlier comment that said the opposite:
+ * the gate DOES fire — it denied `mcp__noesis__list_roots` and `mcp__noesis__list_codebases`
+ * in real traffic, and the model received `is_error` results naming the refusal. An earlier
+ * 2-job sample saw zero firings and wrongly concluded the gate was inert; a permission tool
+ * is simply not consulted for calls that are already pre-approved, and that sample happened
+ * to exercise only pre-approved tools.
+ *
+ * KNOWN GAP, stated rather than glossed: the SDK's cache-warming sidechain
+ * (`isSidechain: true`) is a real model turn that emits genuine `Bash`/`Glob` calls against
+ * the daemon's cwd, with only the RESULT stubbed. `tools: []` does not reach it and this
+ * callback is never consulted there. Nothing executes — but that is Claude Code internal
+ * behaviour we neither own nor test, which is why the daemon is rooted at a neutral cwd
+ * (`scripts/start-agent.sh`), so the warmup probes an empty directory, not a source tree.
+ */
+export function buildCanUseTool(
+/**
+ * The tools permitted for THIS job — i.e. the output of `clampAllowedTools`, not the
+ * module-wide `ALLOWED_TOOLS`. Required, deliberately: an earlier version closed over
+ * `ALLOWED_TOOLS` and so turned a per-job clamp into a union. `clampAllowedTools`
+ * narrows to (what the server asked for ∩ ALLOWED_TOOLS); the gate then re-allowed all
+ * four regardless, so a job clamped to `get_note` could still execute `search_semantic`.
+ * The sets happen to coincide for chat today, which is exactly why it would have gone
+ * unnoticed until the first job kind with a narrower allowlist.
+ */
+permitted, onDecision = logToolDecision) {
+    const permittedSet = new Set(permitted);
+    return async (toolName, input, ctx) => {
+        const allowed = permittedSet.has(toolName);
+        onDecision(toolName, allowed, ctx?.agentID);
+        return allowed
+            ? { behavior: 'allow', updatedInput: (input ?? {}) }
+            : { behavior: 'deny', message: `Tool "${toolName}" is not permitted for a Noesis job.` };
+    };
+}
+/** Default sink: stderr, so the daemon log is the evidence for whether the gate ever fires. */
+function logToolDecision(toolName, allowed, agentID) {
+    console.error(`[noesis-agent] canUseTool ${allowed ? 'ALLOW' : 'DENY'} ${toolName}${agentID ? ` (agent=${agentID})` : ''}`);
+}
+/**
+ * The `options` object handed to sdk.query() — extracted, like buildSdkPrompt above, so
+ * the tool boundary is asserted by a test instead of resting on a comment. `tools: []`
+ * is the security-relevant field: see the note at its assignment. Takes the MCP-server
+ * factory as an argument so a test can supply a stub instead of a real spawn config.
+ */
+export function buildQueryOptions(payload, mcpServersFor) {
+    const allowedTools = clampAllowedTools(payload.allowedTools);
+    return {
+        ...(payload.system ? { systemPrompt: payload.system } : {}),
+        // Suppress the SDK's built-in tool set entirely (`--tools ""`). Without it the CLI
+        // defaults to ALL built-ins — Bash, Read, Write, Edit, Grep, WebSearch — and
+        // ALLOWED_TOOLS above does NOT stop them: `allowedTools` is a PERMISSION allowlist,
+        // so unlisted tools are un-pre-approved, not absent, and their definitions still
+        // reach the model. Worse, the read-only built-ins need no approval at all, so they
+        // actually EXECUTE headless: on 2026-08-14 an English-coach Navi grepped this
+        // daemon's cwd and returned ~100 strings from the user's source tree (jobs 527/528);
+        // only the follow-up file Write stopped, at the permission gate. Unconditional by
+        // design — a server-supplied payload must never be able to ask for a filesystem
+        // primitive. MCP tools travel a separate channel (`--mcp-config`) and are
+        // unaffected: a `use_knowledge_base` Navi still calls search_notes (verified).
+        tools: [],
+        // Independent second layer — see buildCanUseTool. Covers subagent (`Task`) calls too.
+        canUseTool: buildCanUseTool(allowedTools),
+        allowedTools,
+        // Only spawn the Noesis MCP server when a tool actually survived clamping.
+        ...(allowedTools.length > 0 ? { mcpServers: mcpServersFor() } : {}),
+        maxTurns: clampMaxTurns(payload.maxTurns),
+        includePartialMessages: true,
+    };
+}
+/** The prompt text for a job, with the fallback used when a payload carries none. */
+export function resolveJobPrompt(payload, kindLabel) {
+    return payload.prompt ?? `(${kindLabel} job with empty prompt)`;
+}
+/**
+ * The ONE place the SDK is invoked. Exported so a test can pass a fake `sdk` and assert
+ * what actually reaches `query()`.
+ *
+ * This exists because of a real gap: the suite pinned `buildQueryOptions` with a
+ * power-set mutation battery, but NOTHING pinned the call. Restoring the pre-fix inline
+ * options literal here — deleting `tools: []` and `canUseTool` outright — reverted the
+ * entire tool boundary with all 79 tests still green. The builder being correct is
+ * worthless if the caller stops using it, so both the seam below and the source-fitness
+ * test in `agentToolClamp.test.ts` guard this.
+ */
+export function runSdkQuery(sdk, payload, kindLabel, mcpServersFor) {
+    return sdk.query({
+        prompt: buildSdkPrompt(resolveJobPrompt(payload, kindLabel), payload.images),
+        options: buildQueryOptions(payload, mcpServersFor),
+    });
+}
 /**
  * Execute a claimed job and stream its output through the sink. Returns the final
  * text. Real mode runs the Claude Agent SDK on the user's subscription; fake mode
  * emits a canned response so the queue plumbing can be verified without a login.
  */
 async function executeJob(cfg, job, sink) {
-    const prompt = job.payload.prompt ?? `(${job.kind} job with empty prompt)`;
+    const prompt = resolveJobPrompt(job.payload, job.kind);
     if (cfg.fake) {
         const canned = `Noesis local agent (fake mode) processed a "${job.kind}" job. Prompt was: ${prompt.slice(0, 80)}`;
         for (const word of canned.split(' ')) {
@@ -197,18 +346,7 @@ async function executeJob(cfg, job, sink) {
     let finalText = '';
     let sawDelta = false;
     let terminalText = '';
-    const allowedTools = clampAllowedTools(job.payload.allowedTools);
-    const stream = sdk.query({
-        prompt,
-        options: {
-            ...(job.payload.system ? { systemPrompt: job.payload.system } : {}),
-            allowedTools,
-            // Only spawn the Noesis MCP server when a tool actually survived clamping.
-            ...(allowedTools.length > 0 ? { mcpServers: noesisMcpServers(cfg) } : {}),
-            maxTurns: clampMaxTurns(job.payload.maxTurns),
-            includePartialMessages: true,
-        },
-    });
+    const stream = runSdkQuery(sdk, job.payload, job.kind, () => noesisMcpServers(cfg));
     // With includePartialMessages the stream carries BOTH incremental `stream_event`
     // deltas AND a terminal `assistant` message holding the whole reply. Taking both
     // would emit the answer twice, so deltas win and the terminal message is only a
@@ -289,6 +427,13 @@ async function runJob(cfg, job) {
         });
     }
 }
+/**
+ * The daemon's startup banner line — pulled out of runAgentDaemon() so the printed
+ * version string is directly unit-testable without starting the real (infinite) loop.
+ */
+export function startupBanner(cfg) {
+    return `[noesis-agent] v${agentVersion()} started (concurrency=${cfg.concurrency}${cfg.fake ? ', FAKE mode' : ''}) → ${cfg.apiBaseUrl}`;
+}
 /** Run the daemon loop until aborted. */
 export async function runAgentDaemon(cfg, signal) {
     // Footgun guard: keep billing on the subscription, not the metered API.
@@ -296,7 +441,7 @@ export async function runAgentDaemon(cfg, signal) {
         console.error('[noesis-agent] WARNING: ANTHROPIC_API_KEY is set — unsetting it so the Claude Agent SDK uses your subscription, not the metered API.');
         delete process.env.ANTHROPIC_API_KEY;
     }
-    console.error(`[noesis-agent] started (concurrency=${cfg.concurrency}${cfg.fake ? ', FAKE mode' : ''}) → ${cfg.apiBaseUrl}`);
+    console.error(startupBanner(cfg));
     const workers = Array.from({ length: cfg.concurrency }, (_, i) => workerLoop(cfg, `worker-${i + 1}`, signal));
     await Promise.all(workers);
 }

package/dist/agent/runner.js.map

@@ -1 +1 @@
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package/dist/tools/index.d.ts.map

@@ -1 +1 @@
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package/dist/tools/index.js

@@ -3276,6 +3276,19 @@ function parseCloudKeywords(keywords) {
         return [];
     }
 }
+/**
+ * Serialize a single frontmatter scalar (title/description) via js-yaml so values
+ * containing YAML-significant characters (colons, quotes, etc.) round-trip safely.
+ * lineWidth: -1 disables js-yaml's 80-col folding, which would otherwise turn long
+ * values into a multi-line `>-` block instead of keeping the one-line-per-field style.
+ */
+function yamlScalarLine(key, value) {
+    return yaml.dump({ [key]: value }, { lineWidth: -1 }).trimEnd();
+}
+/** Serialize a frontmatter list (keywords) the same way, one array entry per line. */
+function yamlListLines(key, items) {
+    return yaml.dump({ [key]: items }, { lineWidth: -1 }).trimEnd().split('\n');
+}
 /**
  * Update frontmatter in file content with new metadata values
  * Preserves existing frontmatter structure and only updates specified fields
@@ -3290,14 +3303,11 @@ export function updateFrontmatter(content, updates) {
         }
         const frontmatterLines = ['---'];
         if (updates.title)
-            frontmatterLines.push(`title: ${updates.title}`);
+            frontmatterLines.push(yamlScalarLine('title', updates.title));
         if (updates.description)
-            frontmatterLines.push(`description: ${updates.description}`);
+            frontmatterLines.push(yamlScalarLine('description', updates.description));
         if (updates.keywords && updates.keywords.length > 0) {
-            frontmatterLines.push('keywords:');
-            for (const kw of updates.keywords) {
-                frontmatterLines.push(`  - ${kw}`);
-            }
+            frontmatterLines.push(...yamlListLines('keywords', updates.keywords));
         }
         frontmatterLines.push('---');
         return frontmatterLines.join('\n') + '\n' + content;
@@ -3326,24 +3336,21 @@ export function updateFrontmatter(content, updates) {
         const key = line.substring(0, colonIndex).trim().toLowerCase();
         if (key === 'title' && updates.title !== undefined) {
             if (!updatedKeys.has('title')) {
-                newLines.push(`title: ${updates.title}`);
+                newLines.push(yamlScalarLine('title', updates.title));
                 updatedKeys.add('title');
             }
             lastReplacedKey = 'title';
         }
         else if (key === 'description' && updates.description !== undefined) {
             if (!updatedKeys.has('description')) {
-                newLines.push(`description: ${updates.description}`);
+                newLines.push(yamlScalarLine('description', updates.description));
                 updatedKeys.add('description');
             }
             lastReplacedKey = 'description';
         }
         else if ((key === 'keywords' || key === 'tags') && updates.keywords !== undefined) {
             if (!updatedKeys.has('keywords')) {
-                newLines.push('keywords:');
-                for (const kw of updates.keywords) {
-                    newLines.push(`  - ${kw}`);
-                }
+                newLines.push(...yamlListLines('keywords', updates.keywords));
                 updatedKeys.add('keywords');
             }
             lastReplacedKey = 'keywords';
@@ -3355,16 +3362,13 @@ export function updateFrontmatter(content, updates) {
     }
     // Add any new keys that weren't in original frontmatter
     if (updates.title !== undefined && !updatedKeys.has('title')) {
-        newLines.push(`title: ${updates.title}`);
+        newLines.push(yamlScalarLine('title', updates.title));
     }
     if (updates.description !== undefined && !updatedKeys.has('description')) {
-        newLines.push(`description: ${updates.description}`);
+        newLines.push(yamlScalarLine('description', updates.description));
     }
     if (updates.keywords !== undefined && !updatedKeys.has('keywords')) {
-        newLines.push('keywords:');
-        for (const kw of updates.keywords) {
-            newLines.push(`  - ${kw}`);
-        }
+        newLines.push(...yamlListLines('keywords', updates.keywords));
     }
     return '---\n' + newLines.filter(l => l.trim() !== '').join('\n') + '\n---\n' + bodyContent;
 }