@nodes-dev/core 0.0.0

package/dist/structural-index.js

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+import { CollisionError, IdError, RefError } from "./errors.js";
+import { NodeId } from "./ids.js";
+import { RelationSchema } from "./relations.js";
+import { EDGES, KEYS, MEMBERSHIP, ORDER } from "./shapes.js";
+const STRUCTURAL_ENTRY_KEYS = ["uid", "id", "kind", "deprecatedIds", "relations", "structuralRefs"];
+const STRUCTURAL_REF_ROLES = new Set([
+    "membership_member",
+    "edges_source",
+    "edges_target",
+    "order_member",
+    "keys_value",
+]);
+function relationOutRefs(relations) {
+    const refs = [];
+    for (const rel of relations) {
+        refs.push({ ref: rel.source, role: "relation_source", relation: rel });
+        refs.push({ ref: rel.target, role: "relation_target", relation: rel });
+    }
+    return refs;
+}
+// Refs from the built-in structural facets. Read directly from `node.facets`
+// (registry-independent); they populate `inRefs` for rename + dangling integrity but
+// are never relation-graph edges (their `relation` stays undefined).
+function structuralOutRefs(node) {
+    const refs = [];
+    const mem = node.facets[MEMBERSHIP];
+    if (mem !== null && typeof mem === "object") {
+        const members = mem.members;
+        if (Array.isArray(members)) {
+            for (const m of members)
+                if (typeof m === "string")
+                    refs.push({ ref: m, role: "membership_member" });
+        }
+    }
+    const eg = node.facets[EDGES];
+    if (eg !== null && typeof eg === "object") {
+        const edges = eg.edges;
+        if (Array.isArray(edges)) {
+            for (const edge of edges) {
+                if (edge !== null && typeof edge === "object") {
+                    const e = edge;
+                    if (typeof e.source === "string")
+                        refs.push({ ref: e.source, role: "edges_source" });
+                    if (typeof e.target === "string")
+                        refs.push({ ref: e.target, role: "edges_target" });
+                }
+            }
+        }
+    }
+    const od = node.facets[ORDER];
+    if (od !== null && typeof od === "object") {
+        const order = od.order;
+        if (Array.isArray(order)) {
+            for (const m of order)
+                if (typeof m === "string")
+                    refs.push({ ref: m, role: "order_member" });
+        }
+    }
+    const ky = node.facets[KEYS];
+    if (ky !== null && typeof ky === "object") {
+        const keys = ky.keys;
+        if (keys !== null && typeof keys === "object") {
+            for (const v of Object.values(keys)) {
+                if (typeof v === "string")
+                    refs.push({ ref: v, role: "keys_value" });
+            }
+        }
+    }
+    return refs;
+}
+function extractOutRefs(node) {
+    return [...relationOutRefs(node.relations), ...structuralOutRefs(node)];
+}
+function validatedDeprecatedIds(raw, entryId) {
+    if (!Array.isArray(raw))
+        throw new Error("structural snapshot: deprecatedIds must be an array of strings");
+    const out = [];
+    const seen = new Set();
+    for (const dep of raw) {
+        if (typeof dep !== "string")
+            throw new Error("structural snapshot: deprecatedIds must be an array of strings");
+        if (dep === entryId)
+            throw new Error(`structural snapshot: identity claim ${JSON.stringify(dep)} is both live and deprecated in one entry`);
+        if (seen.has(dep))
+            throw new Error(`structural snapshot: duplicate deprecated identity claim ${JSON.stringify(dep)} in one entry`);
+        seen.add(dep);
+        out.push(dep);
+    }
+    return out;
+}
+function validateSnapshotWeight(raw, label) {
+    if (!("weight" in raw))
+        return;
+    const weight = raw.weight;
+    if (typeof weight !== "number" || !Number.isFinite(weight)) {
+        throw new Error(`structural snapshot: ${label} weight must be a finite number`);
+    }
+}
+function validateSnapshotDirected(raw, label) {
+    if ("directed" in raw && typeof raw.directed !== "boolean") {
+        throw new Error(`structural snapshot: ${label} directed must be a boolean`);
+    }
+}
+function validatedStructuralRefs(raw) {
+    if (!Array.isArray(raw))
+        throw new Error("structural snapshot: structuralRefs must be an array");
+    const out = [];
+    for (const item of raw) {
+        if (item === null || typeof item !== "object")
+            throw new Error("structural snapshot: structuralRef must be an object");
+        const { ref, role } = item;
+        if (typeof ref !== "string")
+            throw new Error("structural snapshot: structuralRef ref must be a string");
+        if (typeof role !== "string" || !STRUCTURAL_REF_ROLES.has(role))
+            throw new Error("structural snapshot: structuralRef role is invalid");
+        out.push({ ref, role: role });
+    }
+    return out;
+}
+/** In-memory structural index. Pure data; no file I/O. */
+export class Index {
+    byUid = new Map();
+    idToUid = new Map();
+    deprecatedToUid = new Map();
+    inRefs = new Map();
+    static build(nodes) {
+        const idx = new Index();
+        for (const node of nodes) {
+            if (idx.byUid.has(node.uid)) {
+                throw new CollisionError(`duplicate uid ${JSON.stringify(node.uid)} in corpus`);
+            }
+            idx.assertAddable(node); // fail-early on a corrupt corpus (collision contract)
+            idx.upsert(node);
+        }
+        return idx;
+    }
+    resolveUid(ref) {
+        return this.idToUid.get(ref) ?? this.deprecatedToUid.get(ref) ?? null;
+    }
+    // The collision gate. `upsert` is mechanical and never raises; this is what `build`
+    // and `Corpus.add` call before `upsert`. `Corpus.rename` does NOT call it (rename
+    // changes a uid's live id, which the second clause would reject mid-commit).
+    assertAddable(node) {
+        const existing = this.byUid.get(node.uid);
+        if (existing !== undefined && existing.id !== node.id) {
+            throw new CollisionError(`uid ${JSON.stringify(node.uid)} already belongs to live id ${JSON.stringify(existing.id)}; use rename()`);
+        }
+        for (const claim of [node.id, ...node.deprecatedIds]) {
+            const owner = this.resolveUid(claim);
+            if (owner !== null && owner !== node.uid) {
+                throw new CollisionError(`identity claim ${JSON.stringify(claim)} already in use by uid ${JSON.stringify(owner)}`);
+            }
+        }
+    }
+    upsert(node) {
+        if (this.byUid.has(node.uid))
+            this.drop(node.uid);
+        const entry = {
+            uid: node.uid,
+            id: node.id,
+            kind: node.kind,
+            deprecatedIds: new Set(node.deprecatedIds),
+            outRefs: extractOutRefs(node),
+        };
+        this.byUid.set(node.uid, entry);
+        this.idToUid.set(node.id, node.uid);
+        for (const dep of node.deprecatedIds)
+            this.deprecatedToUid.set(dep, node.uid);
+        for (const oref of entry.outRefs) {
+            const rows = this.inRefs.get(oref.ref) ?? [];
+            rows.push({ sourceUid: node.uid, outRef: oref });
+            this.inRefs.set(oref.ref, rows);
+        }
+    }
+    toDict() {
+        const entries = [];
+        for (const entry of this.byUid.values()) {
+            const relations = [];
+            for (const o of entry.outRefs) {
+                if (o.role !== "relation_source" || o.relation === undefined)
+                    continue;
+                const rel = o.relation;
+                const row = {
+                    source: rel.source,
+                    predicate: rel.predicate,
+                    target: rel.target,
+                    directed: rel.directed,
+                    attrs: structuredClone(rel.attrs),
+                };
+                if (rel.weight !== null)
+                    row.weight = rel.weight;
+                relations.push(row);
+            }
+            entries.push({
+                uid: entry.uid,
+                id: entry.id,
+                kind: entry.kind,
+                deprecatedIds: [...entry.deprecatedIds].sort(),
+                relations,
+                structuralRefs: entry.outRefs
+                    .filter((o) => !o.role.startsWith("relation_"))
+                    .map((o) => ({ ref: o.ref, role: o.role })),
+            });
+        }
+        return { entries };
+    }
+    static fromDict(d) {
+        if (typeof d !== "object" || d === null)
+            throw new Error("structural snapshot: document must be an object");
+        const raw = d;
+        if (!("entries" in raw))
+            throw new Error("structural snapshot: missing entries");
+        if (!Array.isArray(raw.entries))
+            throw new Error("structural snapshot: entries must be an array");
+        const idx = new Index();
+        for (const rawEntry of raw.entries) {
+            if (typeof rawEntry !== "object" || rawEntry === null)
+                throw new Error("structural snapshot: entry must be an object");
+            const e = rawEntry;
+            for (const key of STRUCTURAL_ENTRY_KEYS) {
+                if (!(key in e))
+                    throw new Error(`structural snapshot: entry missing ${key}`);
+            }
+            const { uid, id: entryId, kind } = e;
+            if (typeof uid !== "string")
+                throw new Error("structural snapshot: entry uid must be a string");
+            if (typeof entryId !== "string")
+                throw new Error("structural snapshot: entry id must be a string");
+            if (typeof kind !== "string")
+                throw new Error("structural snapshot: entry kind must be a string");
+            let parsed;
+            try {
+                parsed = NodeId.parse(entryId);
+            }
+            catch (err) {
+                if (err instanceof IdError)
+                    throw new Error("structural snapshot: entry id must be a valid node id");
+                throw err;
+            }
+            if (parsed.kind !== kind)
+                throw new Error("structural snapshot: entry id kind must match entry kind");
+            if (!Array.isArray(e.relations))
+                throw new Error("structural snapshot: entry relations must be an array");
+            if (idx.byUid.has(uid))
+                throw new Error(`structural snapshot: duplicate uid ${JSON.stringify(uid)}`);
+            const deprecatedIds = validatedDeprecatedIds(e.deprecatedIds, entryId);
+            const relations = [];
+            for (const rawRel of e.relations) {
+                if (typeof rawRel !== "object" || rawRel === null)
+                    throw new Error("structural snapshot: relation row must be an object");
+                const rr = rawRel;
+                validateSnapshotDirected(rr, "relation row");
+                validateSnapshotWeight(rr, "relation row");
+                const relData = { ...rr, attrs: structuredClone(rr.attrs ?? {}) };
+                const result = RelationSchema.safeParse(relData);
+                if (!result.success)
+                    throw new Error("structural snapshot: invalid relation row");
+                relations.push(result.data);
+            }
+            const structuralRefs = validatedStructuralRefs(e.structuralRefs);
+            const outRefs = [...relationOutRefs(relations), ...structuralRefs];
+            const entry = {
+                uid,
+                id: entryId,
+                kind,
+                deprecatedIds: new Set(deprecatedIds),
+                outRefs,
+            };
+            for (const claim of [entry.id, ...entry.deprecatedIds]) {
+                const owner = idx.resolveUid(claim);
+                if (owner !== null) {
+                    throw new Error(`structural snapshot: identity claim ${JSON.stringify(claim)} already in use by uid ${JSON.stringify(owner)}`);
+                }
+            }
+            idx.byUid.set(uid, entry);
+            idx.idToUid.set(entry.id, uid);
+            for (const dep of entry.deprecatedIds)
+                idx.deprecatedToUid.set(dep, uid);
+            for (const oref of outRefs) {
+                const rows = idx.inRefs.get(oref.ref) ?? [];
+                rows.push({ sourceUid: uid, outRef: oref });
+                idx.inRefs.set(oref.ref, rows);
+            }
+        }
+        return idx;
+    }
+    remove(uid) {
+        this.drop(uid);
+    }
+    drop(uid) {
+        const entry = this.byUid.get(uid);
+        if (entry === undefined)
+            return;
+        this.byUid.delete(uid);
+        if (this.idToUid.get(entry.id) === uid)
+            this.idToUid.delete(entry.id);
+        for (const dep of entry.deprecatedIds) {
+            if (this.deprecatedToUid.get(dep) === uid)
+                this.deprecatedToUid.delete(dep);
+        }
+        // Drop only the refs THIS node contributed as a source. Inbound refs that other
+        // (surviving) nodes contributed pointing at this node's ids must persist — they
+        // are still on disk and become dangling.
+        for (const [ref, rows] of [...this.inRefs.entries()]) {
+            const kept = rows.filter((r) => r.sourceUid !== uid);
+            if (kept.length > 0)
+                this.inRefs.set(ref, kept);
+            else
+                this.inRefs.delete(ref);
+        }
+    }
+    refsForUid(uid) {
+        const entry = this.byUid.get(uid);
+        if (entry === undefined)
+            throw new RefError(`uid ${JSON.stringify(uid)} not in index`);
+        return [entry.id, ...[...entry.deprecatedIds].sort()];
+    }
+    resolveEdge(rel) {
+        return { relation: rel, sourceUid: this.resolveUid(rel.source), targetUid: this.resolveUid(rel.target) };
+    }
+    // Public graph queries are defined over distinct `Relation` OBJECTS (reference identity —
+    // the TS analog of Python's `id(relation)` dedup), relations-only. A relation never
+    // appears twice, and a relation whose source is a non-container node still attributes
+    // correctly because we key on `relation_source` / `relation_target` roles.
+    relationsByRole(uid, role) {
+        const seen = new Set();
+        const edges = [];
+        for (const ref of this.refsForUid(uid)) {
+            for (const inref of this.inRefs.get(ref) ?? []) {
+                const oref = inref.outRef;
+                if (oref.role !== role || oref.relation === undefined)
+                    continue;
+                if (seen.has(oref.relation))
+                    continue;
+                seen.add(oref.relation);
+                edges.push(this.resolveEdge(oref.relation));
+            }
+        }
+        return edges;
+    }
+    outboundEdges(uid) {
+        return this.relationsByRole(uid, "relation_source");
+    }
+    inboundEdges(uid) {
+        return this.relationsByRole(uid, "relation_target");
+    }
+    danglingEdges() {
+        const seen = new Set();
+        const edges = [];
+        for (const entry of this.byUid.values()) {
+            for (const oref of entry.outRefs) {
+                // Only the target side can dangle: a relation is dangling when its TARGET ref resolves
+                // to no live uid. (Source-side refs are the node's own outbound edges, always resolvable.)
+                if (oref.role !== "relation_target" || oref.relation === undefined)
+                    continue;
+                if (seen.has(oref.relation))
+                    continue;
+                if (this.resolveUid(oref.ref) === null) {
+                    seen.add(oref.relation);
+                    edges.push(this.resolveEdge(oref.relation));
+                }
+            }
+        }
+        return edges;
+    }
+    /** Uids of this node's resolvable direct members. Dangling member refs are skipped
+     * (check reports them); duplicate entries and live+deprecated refs dedupe by uid. */
+    membersOf(uid) {
+        const entry = this.byUid.get(uid);
+        if (entry === undefined)
+            throw new RefError(`uid ${JSON.stringify(uid)} not in index`);
+        const members = new Set();
+        for (const oref of entry.outRefs) {
+            if (oref.role !== "membership_member")
+                continue;
+            const memberUid = this.resolveUid(oref.ref);
+            if (memberUid !== null)
+                members.add(memberUid);
+        }
+        return members;
+    }
+    /** Uids of the nodes whose membership facet lists any of this node's identity claims
+     * (live id or deprecated ids — the same attribution rule as relationsByRole). */
+    containersOf(uid) {
+        const containers = new Set();
+        for (const ref of this.refsForUid(uid)) {
+            for (const inref of this.inRefs.get(ref) ?? []) {
+                if (inref.outRef.role !== "membership_member")
+                    continue;
+                containers.add(inref.sourceUid);
+            }
+        }
+        return containers;
+    }
+    /** Transitive membership closure (BFS). The visited set is seeded with the start uid,
+     * which is excluded from the result even when a membership cycle reaches it. */
+    membershipClosure(uid, direction) {
+        const step = direction === "members" ? this.membersOf.bind(this) : this.containersOf.bind(this);
+        const visited = new Set([uid]);
+        const queue = [uid];
+        let head = 0;
+        while (head < queue.length) {
+            const current = queue[head++];
+            for (const next of step(current)) {
+                if (visited.has(next))
+                    continue;
+                visited.add(next);
+                queue.push(next);
+            }
+        }
+        visited.delete(uid);
+        return visited;
+    }
+    /** Every unresolved membership ref, deduped by (container uid, ref). */
+    danglingMembers() {
+        const out = [];
+        const seen = new Set();
+        for (const entry of this.byUid.values()) {
+            for (const oref of entry.outRefs) {
+                if (oref.role !== "membership_member")
+                    continue;
+                if (this.resolveUid(oref.ref) !== null)
+                    continue;
+                const key = `${entry.uid}\u0000${oref.ref}`;
+                if (seen.has(key))
+                    continue;
+                seen.add(key);
+                out.push({ sourceUid: entry.uid, ref: oref.ref });
+            }
+        }
+        return out;
+    }
+}
+//# sourceMappingURL=structural-index.js.map

package/dist/structural-index.js.map

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package/package.json

@@ -0,0 +1,50 @@
+{
+  "name": "@nodes-dev/core",
+  "version": "0.0.0",
+  "description": "Nodes core: a problem-agnostic knowledge substrate (TypeScript)",
+  "license": "MIT",
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/nodes-dev/core.git",
+    "directory": "ts"
+  },
+  "homepage": "https://github.com/nodes-dev/core",
+  "bugs": {
+    "url": "https://github.com/nodes-dev/core/issues"
+  },
+  "type": "module",
+  "engines": {
+    "node": ">=20"
+  },
+  "packageManager": "npm@11.11.0",
+  "main": "dist/index.js",
+  "types": "dist/index.d.ts",
+  "exports": {
+    ".": {
+      "types": "./dist/index.d.ts",
+      "default": "./dist/index.js"
+    }
+  },
+  "files": [
+    "dist"
+  ],
+  "publishConfig": {
+    "access": "public"
+  },
+  "scripts": {
+    "build": "tsc -p tsconfig.build.json",
+    "test": "vitest run",
+    "typecheck": "tsc --noEmit",
+    "check": "biome check ."
+  },
+  "dependencies": {
+    "yaml": "^2.5.0",
+    "zod": "^3.23.0"
+  },
+  "devDependencies": {
+    "@biomejs/biome": "^1.9.0",
+    "@types/node": "^20.0.0",
+    "typescript": "^5.5.0",
+    "vitest": "^2.0.0"
+  }
+}