@noatgnu/cupcake-vanilla 1.4.4 → 1.4.6

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@noatgnu/cupcake-vanilla",
-  "version": "1.4.4",
+  "version": "1.4.6",
   "description": "An extension for cupcake-core that provides additional api and interfaces for facility to manage and compose metadata.",
   "author": "Toan Phung",
   "license": "MIT",

package/types/noatgnu-cupcake-vanilla.d.ts

@@ -1,8 +1,8 @@
 import * as _angular_core from '@angular/core';
 import { OnInit, EventEmitter, OnChanges, SimpleChanges, Signal, OnDestroy, ElementRef, AfterViewInit, Renderer2 } from '@angular/core';
-import { Observable, OperatorFunction } from 'rxjs';
-import { BaseApiService, NotificationService as NotificationService$1, AsyncTaskQueryParams, PaginatedResponse as PaginatedResponse$1, AsyncTaskStatus, DownloadUrlResponse, MetadataExportRequest, AsyncTaskCreateResponse, BulkExportRequest, BulkExcelExportRequest, MetadataImportRequest, ValidationSchema, MetadataValidationRequest, SdrfFileValidationRequest, ChunkedImportRequest, WebSocketService, WebSocketMessage, DesktopRuntime, User, AuthService, LabGroupService, LabGroup, MetadataValidationConfig, ConfirmDialogService, TaskType, TaskStatus, LabGroupQueryResponse, ToastService, ResourceVisibility } from '@noatgnu/cupcake-core';
+import { WebSocketMessage, BaseApiService, NotificationService as NotificationService$1, AsyncTaskQueryParams, PaginatedResponse as PaginatedResponse$1, AsyncTaskStatus, DownloadUrlResponse, MetadataExportRequest, AsyncTaskCreateResponse, BulkExportRequest, BulkExcelExportRequest, MetadataImportRequest, ValidationSchema, MetadataValidationRequest, SdrfFileValidationRequest, ChunkedImportRequest, WebSocketService, DesktopRuntime, User, AuthService, LabGroupService, LabGroup, MetadataValidationConfig, ConfirmDialogService, TaskType, TaskStatus, LabGroupQueryResponse, ToastService, ResourceVisibility } from '@noatgnu/cupcake-core';
 export { WebSocketMessage } from '@noatgnu/cupcake-core';
+import { Observable, OperatorFunction } from 'rxjs';
 import * as _angular_forms from '@angular/forms';
 import { FormGroup, FormBuilder } from '@angular/forms';
 import { NgbActiveModal, NgbModal } from '@ng-bootstrap/ng-bootstrap';
@@ -57,7 +57,9 @@ declare enum OntologyType {
     MS_UNIQUE_VOCABULARIES = "ms_unique_vocabularies",
     PSI_MS = "psi_ms",
     BTO = "bto",
-    DOID = "doid"
+    DOID = "doid",
+    PROTOCOLS_IO_REAGENT = "protocols_io_reagent",
+    PROTOCOLS_IO_UNIT = "protocols_io_unit"
 }
 declare const OntologyTypeLabels: Record<OntologyType, string>;
 declare enum TemplatePermissionLevel {
@@ -736,6 +738,13 @@ interface OntologySuggestion {
     ontologyType: string;
     fullData?: any;
 }
+interface ExternalVocabularyUpdatedMessage extends WebSocketMessage {
+    type: 'external_vocabulary.updated';
+    ontology_type: string;
+    search_term: string;
+    stored: number;
+    user_id?: number;
+}
 
 interface UnimodSpecification {
     accession: string;
@@ -1204,6 +1213,7 @@ declare class MetadataColumnService extends BaseApiService {
         count: number;
         customFilters: any;
         hasMore: boolean;
+        remotePending?: boolean;
     }>;
     /**
      * Validate value against column's ontology
@@ -1676,6 +1686,7 @@ declare class MetadataColumnTemplateService extends BaseApiService {
         count: number;
         customFilters: any;
         hasMore: boolean;
+        remotePending?: boolean;
     }>;
     /**
      * Get column templates grouped by (column_name, column_type)
@@ -1794,8 +1805,10 @@ interface OntologySuggestResponse {
     count: number;
     customFilters?: Record<string, any>;
     hasMore: boolean;
+    remotePending?: boolean;
 }
 declare class OntologySearchService extends BaseApiService {
+    private websocket;
     /**
      * Get ontology suggestions across all sources for SDRF validation
      *
@@ -1820,6 +1833,11 @@ declare class OntologySearchService extends BaseApiService {
      * Search specific ontology type
      */
     searchType(query: string, ontologyType: string, limit?: number): Observable<OntologySuggestResponse>;
+    /**
+     * Notifications that results from an external platform, such as protocols.io, were added to
+     * the local vocabulary after a search answered with remotePending.
+     */
+    vocabularyUpdates(): Observable<ExternalVocabularyUpdatedMessage>;
     static ɵfac: _angular_core.ɵɵFactoryDeclaration<OntologySearchService, never>;
     static ɵprov: _angular_core.ɵɵInjectableDeclaration<OntologySearchService>;
 }
@@ -2554,6 +2572,7 @@ declare class MetadataValueEditModal implements OnInit {
     editFormInvalid: Signal<boolean>;
     isLoading: _angular_core.WritableSignal<boolean>;
     isLoadingSuggestions: _angular_core.WritableSignal<boolean>;
+    private lastSearchTerm;
     searchType: _angular_core.WritableSignal<"icontains" | "istartswith">;
     isLoadingFavorites: _angular_core.WritableSignal<boolean>;
     userFavorites: _angular_core.WritableSignal<FavouriteMetadataOption[]>;
@@ -3759,4 +3778,4 @@ declare class DualScrollDirective implements AfterViewInit, OnDestroy {
 }
 
 export { AsyncExportService, AsyncImportService, AsyncTaskService, AsyncTaskUIService, AsyncValidationService, COLUMN_TYPE_CONFIGS, ChunkedImportService, ChunkedUploadService, ColumnEditModal, ColumnOverrideImportModal, ColumnTemplateEditModal, ColumnTemplates, ColumnType, CupcakeVanilla, DesktopService, DualScrollDirective, ElectronService, ExcelExportModalComponent, ExcelLaunchService, FavoriteManagement, FavouriteMetadataOptionService, MSTermType, MetadataColumnAutofillModal, MetadataColumnHistoryModal, MetadataColumnService, MetadataColumnTemplateService, MetadataColumnTemplateShareService, MetadataManagementService, MetadataTableDetails, MetadataTableEditModal, MetadataTableService, MetadataTableTemplateEditModal, MetadataTableTemplateService, MetadataTableTemplates, MetadataValidationModal, MetadataValueEditModal, NotificationService, NotificationType, OFFICIAL_SDRF_COLUMNS, ONTOLOGY_TYPE_CONFIGS, OfficialColumnCacheService, OntologySearchService, OntologyType, OntologyTypeLabels, OntologyUtils, OpenInExcel, SDRFDefaultsService, SamplePoolCreateModal, SamplePoolDetailsModal, SamplePoolEditModal, SamplePoolService, SchemaSelectionModal, SchemaService, SdrfAgeInput, SdrfCleavageInput, SdrfColumnCategory, SdrfModificationInput, SdrfMzRangeInput, SdrfNumberWithUnitInput, SdrfSelectInput, SdrfSpikedCompoundInput, SdrfSyntaxService, SearchReplaceModal, TableCreationModalComponent, TemplatePermissionLabels, TemplatePermissionLevel, TemplateSchemaSelectionModal, ValidationResultsModal, Websocket, createSyntheticColumnFromTemplate, getRequiredSdrfColumns, getSdrfColumnByName, getSdrfColumnsByCategory, isSdrfColumnRequired, isUnimodFullData };
-export type { AdvancedAutofillRequest, AdvancedAutofillResponse, AgeFormat, ApiError, ApiResponse, BTOTerm, BaseTimestampedModel, CellOntology, ChEBICompound, ChunkedFileImportRequest, ChunkedImportProgress, ChunkedUploadCompletionRequest, ChunkedUploadCompletionResponse, ChunkedUploadRequest, ChunkedUploadResponse, ChunkedUploadStatus, CleavageAgentDetails, ColumnConfig, ColumnHistoryModalConfig, ColumnInputType, ColumnOverrideCommitResult, ColumnOverrideImportModalConfig, ColumnOverrideImportOptions, ColumnOverrideMappingEntry, ColumnOverrideMatchedColumn, ColumnOverridePreviewResult, ColumnOverrideSuggestResult, ColumnTypeConfig, ColumnValidator, DiseaseOntologyTerm, ExcelExportOptions, ExcelLaunchClaimRequest, ExcelLaunchClaimResponse, ExcelLaunchCode, ExcelLaunchRequest, FavouriteMetadataOption, FavouriteMetadataOptionCreateRequest, FavouriteMetadataOptionQueryParams, FavouriteMetadataOptionUpdateRequest, GroupedColumnTemplate, GroupedColumnTemplateQueryParams, HumanDisease, MSUniqueVocabularies, MetadataColumn, MetadataColumnAutofillConfig, MetadataColumnCreateRequest, MetadataColumnHistoryChange, MetadataColumnHistoryRecord, MetadataColumnHistoryResponse, MetadataColumnHistorySnapshot, MetadataColumnModifier, MetadataColumnQueryParams, MetadataColumnTemplate, MetadataColumnTemplateCreateRequest, MetadataColumnTemplateQueryParams, MetadataColumnTemplateShare, MetadataColumnTemplateShareCreateRequest, MetadataColumnTemplateShareQueryParams, MetadataColumnTemplateUpdateRequest, MetadataColumnUpdateRequest, MetadataQueryParams, MetadataTable, MetadataTableCreateRequest, MetadataTableQueryParams, MetadataTableQueryResponse, MetadataTableTemplate, MetadataTableTemplateCreateRequest, MetadataTableTemplateQueryParams, MetadataTableTemplateQueryResponse, MetadataTableTemplateSyncRequest, MetadataTableTemplateSyncResponse, MetadataTableTemplateUpdateRequest, MetadataTableUpdateRequest, MetadataValueEditConfig, ModificationParameters, MondoDisease, MzRange, NCBITaxonomy, OntologyCustomFilter, OntologySuggestParams, OntologySuggestResponse, OntologySuggestion, OntologyTypeConfig, PSIMSOntology, PaginatedResponse, PooledSample, SampleCountConfirmationError, SampleCountValidationRequest, SampleCountValidationResponse, SampleCountValidationResult, SamplePool, SamplePoolCreateRequest, SamplePoolQueryParams, SamplePoolUpdateRequest, Schema, SchemaColumn, SchemaLayer, SchemaQueryParams, SchemaSelectionResult, SchemasByLayer, SdrfColumnConfig, SearchReplaceConfig, ShareTokenResponse, Species, SpikedCompound, SubcellularLocation, SyntaxType, SyntheticPeptide, TableCreationData, TemplateSchemaSelectionResult, Tissue, UberonAnatomy, Unimod, UnimodFullData, UnimodSpecification, ValidationResult, ValidationResults, VariationSpec, VariationSpecList, VariationSpecPattern, VariationSpecRange };
+export type { AdvancedAutofillRequest, AdvancedAutofillResponse, AgeFormat, ApiError, ApiResponse, BTOTerm, BaseTimestampedModel, CellOntology, ChEBICompound, ChunkedFileImportRequest, ChunkedImportProgress, ChunkedUploadCompletionRequest, ChunkedUploadCompletionResponse, ChunkedUploadRequest, ChunkedUploadResponse, ChunkedUploadStatus, CleavageAgentDetails, ColumnConfig, ColumnHistoryModalConfig, ColumnInputType, ColumnOverrideCommitResult, ColumnOverrideImportModalConfig, ColumnOverrideImportOptions, ColumnOverrideMappingEntry, ColumnOverrideMatchedColumn, ColumnOverridePreviewResult, ColumnOverrideSuggestResult, ColumnTypeConfig, ColumnValidator, DiseaseOntologyTerm, ExcelExportOptions, ExcelLaunchClaimRequest, ExcelLaunchClaimResponse, ExcelLaunchCode, ExcelLaunchRequest, ExternalVocabularyUpdatedMessage, FavouriteMetadataOption, FavouriteMetadataOptionCreateRequest, FavouriteMetadataOptionQueryParams, FavouriteMetadataOptionUpdateRequest, GroupedColumnTemplate, GroupedColumnTemplateQueryParams, HumanDisease, MSUniqueVocabularies, MetadataColumn, MetadataColumnAutofillConfig, MetadataColumnCreateRequest, MetadataColumnHistoryChange, MetadataColumnHistoryRecord, MetadataColumnHistoryResponse, MetadataColumnHistorySnapshot, MetadataColumnModifier, MetadataColumnQueryParams, MetadataColumnTemplate, MetadataColumnTemplateCreateRequest, MetadataColumnTemplateQueryParams, MetadataColumnTemplateShare, MetadataColumnTemplateShareCreateRequest, MetadataColumnTemplateShareQueryParams, MetadataColumnTemplateUpdateRequest, MetadataColumnUpdateRequest, MetadataQueryParams, MetadataTable, MetadataTableCreateRequest, MetadataTableQueryParams, MetadataTableQueryResponse, MetadataTableTemplate, MetadataTableTemplateCreateRequest, MetadataTableTemplateQueryParams, MetadataTableTemplateQueryResponse, MetadataTableTemplateSyncRequest, MetadataTableTemplateSyncResponse, MetadataTableTemplateUpdateRequest, MetadataTableUpdateRequest, MetadataValueEditConfig, ModificationParameters, MondoDisease, MzRange, NCBITaxonomy, OntologyCustomFilter, OntologySuggestParams, OntologySuggestResponse, OntologySuggestion, OntologyTypeConfig, PSIMSOntology, PaginatedResponse, PooledSample, SampleCountConfirmationError, SampleCountValidationRequest, SampleCountValidationResponse, SampleCountValidationResult, SamplePool, SamplePoolCreateRequest, SamplePoolQueryParams, SamplePoolUpdateRequest, Schema, SchemaColumn, SchemaLayer, SchemaQueryParams, SchemaSelectionResult, SchemasByLayer, SdrfColumnConfig, SearchReplaceConfig, ShareTokenResponse, Species, SpikedCompound, SubcellularLocation, SyntaxType, SyntheticPeptide, TableCreationData, TemplateSchemaSelectionResult, Tissue, UberonAnatomy, Unimod, UnimodFullData, UnimodSpecification, ValidationResult, ValidationResults, VariationSpec, VariationSpecList, VariationSpecPattern, VariationSpecRange };