@noatgnu/cupcake-vanilla 1.4.4 → 1.4.5

package/fesm2022/noatgnu-cupcake-vanilla.mjs

@@ -3,7 +3,7 @@ import { Injectable, inject, signal, computed, effect, untracked, NgZone, EventE
 import * as i3 from '@noatgnu/cupcake-core';
 import { BaseApiService, WebSocketService, NotificationService as NotificationService$1, SiteConfigService, LabGroupService, ToastService, AsyncTaskMonitorService, TaskStatus, TaskType, ResourceVisibility, AuthService, ConfirmDialogService } from '@noatgnu/cupcake-core';
 import { map, switchMap, tap as tap$1, takeUntil } from 'rxjs/operators';
-import { of, tap, map as map$1, catchError, expand, EMPTY, reduce, throwError, from, Observable, Subject, NEVER, debounceTime, distinctUntilChanged, filter, switchMap as switchMap$1, firstValueFrom, takeUntil as takeUntil$1 } from 'rxjs';
+import { of, tap, map as map$1, catchError, expand, EMPTY, reduce, throwError, from, Observable, Subject, NEVER, debounceTime, distinctUntilChanged, filter, switchMap as switchMap$1, merge, firstValueFrom, takeUntil as takeUntil$1 } from 'rxjs';
 import jsSHA from 'jssha';
 import * as i1$1 from '@angular/common';
 import { CommonModule } from '@angular/common';
@@ -38,6 +38,8 @@ var OntologyType;
     OntologyType["PSI_MS"] = "psi_ms";
     OntologyType["BTO"] = "bto";
     OntologyType["DOID"] = "doid";
+    OntologyType["PROTOCOLS_IO_REAGENT"] = "protocols_io_reagent";
+    OntologyType["PROTOCOLS_IO_UNIT"] = "protocols_io_unit";
 })(OntologyType || (OntologyType = {}));
 const OntologyTypeLabels = {
     [OntologyType.NONE]: 'None',
@@ -54,7 +56,9 @@ const OntologyTypeLabels = {
     [OntologyType.MS_UNIQUE_VOCABULARIES]: 'MS Unique Vocabularies',
     [OntologyType.PSI_MS]: 'PSI-MS Controlled Vocabulary',
     [OntologyType.BTO]: 'BTO Tissue',
-    [OntologyType.DOID]: 'Disease Ontology (DOID)'
+    [OntologyType.DOID]: 'Disease Ontology (DOID)',
+    [OntologyType.PROTOCOLS_IO_REAGENT]: 'protocols.io Reagent',
+    [OntologyType.PROTOCOLS_IO_UNIT]: 'protocols.io Unit'
 };
 var TemplatePermissionLevel;
 (function (TemplatePermissionLevel) {
@@ -163,6 +167,8 @@ const ONTOLOGY_TYPE_CONFIGS = [
     { value: OntologyType.PSI_MS, label: 'PSI-MS', customFilters: undefined },
     { value: OntologyType.BTO, label: 'BTO Tissue (BRENDA)', customFilters: undefined },
     { value: OntologyType.DOID, label: 'Disease Ontology (DOID)', customFilters: undefined },
+    { value: OntologyType.PROTOCOLS_IO_REAGENT, label: 'Reagent (protocols.io)', customFilters: undefined },
+    { value: OntologyType.PROTOCOLS_IO_UNIT, label: 'Unit (protocols.io)', customFilters: undefined },
     // MS Unique Vocabularies with specific term_type filters
     {
         value: OntologyType.MS_UNIQUE_VOCABULARIES,
@@ -1613,6 +1619,7 @@ i0.ɵɵngDeclareClassMetadata({ minVersion: "12.0.0", version: "22.1.1", ngImpor
         }], ctorParameters: () => [] });
 
 class OntologySearchService extends BaseApiService {
+    websocket = inject(WebSocketService);
     /**
      * Get ontology suggestions across all sources for SDRF validation
      *
@@ -1673,6 +1680,13 @@ class OntologySearchService extends BaseApiService {
             limit
         });
     }
+    /**
+     * Notifications that results from an external platform, such as protocols.io, were added to
+     * the local vocabulary after a search answered with remotePending.
+     */
+    vocabularyUpdates() {
+        return this.websocket.filterMessages('external_vocabulary.updated');
+    }
     static ɵfac = i0.ɵɵngDeclareFactory({ minVersion: "12.0.0", version: "22.1.1", ngImport: i0, type: OntologySearchService, deps: null, target: i0.ɵɵFactoryTarget.Injectable });
     static ɵprov = i0.ɵɵngDeclareInjectable({ minVersion: "12.0.0", version: "22.1.1", ngImport: i0, type: OntologySearchService, providedIn: 'root' });
 }
@@ -4195,6 +4209,7 @@ class MetadataValueEditModal {
     ...(ngDevMode ? [{ debugName: "isLoading" }] : /* istanbul ignore next */ []));
     isLoadingSuggestions = signal(false, /* @ts-ignore */
     ...(ngDevMode ? [{ debugName: "isLoadingSuggestions" }] : /* istanbul ignore next */ []));
+    lastSearchTerm = '';
     searchType = signal('icontains', /* @ts-ignore */
     ...(ngDevMode ? [{ debugName: "searchType" }] : /* istanbul ignore next */ []));
     isLoadingFavorites = signal(false, /* @ts-ignore */
@@ -4335,7 +4350,13 @@ class MetadataValueEditModal {
     }
     // Ontology autocomplete methods
     searchOntology = (text$) => {
-        return text$.pipe(debounceTime(200), distinctUntilChanged(), tap(() => this.isLoadingSuggestions.set(true)), switchMap$1(term => {
+        const typed$ = text$.pipe(debounceTime(200), distinctUntilChanged());
+        const refreshed$ = this.ontologySearchService.vocabularyUpdates().pipe(filter(update => update.ontology_type === this.config?.ontologyType &&
+            update.search_term.toLowerCase() === this.lastSearchTerm.trim().toLowerCase()), map$1(() => this.lastSearchTerm));
+        return merge(typed$, refreshed$).pipe(tap(term => {
+            this.lastSearchTerm = term;
+            this.isLoadingSuggestions.set(true);
+        }), switchMap$1(term => {
             if (term.length < 2 || !this.hasOntologyType) {
                 this.isLoadingSuggestions.set(false);
                 return of([]);
@@ -5067,6 +5088,7 @@ class AsyncTaskUIService {
             [TaskType.TRANSCRIBE_AUDIO]: 'Audio transcription',
             [TaskType.TRANSCRIBE_VIDEO]: 'Video transcription',
             [TaskType.VALIDATE_SDRF_FILE]: 'SDRF file validation',
+            [TaskType.EXPORT_PROTOCOLS_IO]: 'protocols.io export',
         };
         return typeMap[taskType] || taskType;
     }
@@ -9992,12 +10014,18 @@ class MetadataTableDetails {
         if (tableId) {
             this.router.navigate(['/metadata-tables', tableId, 'list']);
         }
+        else {
+            this.viewMode.set('list');
+        }
     }
     switchToTableMode() {
         const tableId = this.tableId();
         if (tableId) {
             this.router.navigate(['/metadata-tables', tableId, 'table']);
         }
+        else {
+            this.viewMode.set('table');
+        }
     }
     onPageChange(page) {
         this.currentPage.set(page);