@noatgnu/cupcake-vanilla 1.4.3 → 1.4.5

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@noatgnu/cupcake-vanilla",
-  "version": "1.4.3",
+  "version": "1.4.5",
   "description": "An extension for cupcake-core that provides additional api and interfaces for facility to manage and compose metadata.",
   "author": "Toan Phung",
   "license": "MIT",

package/types/noatgnu-cupcake-vanilla.d.ts

@@ -1,8 +1,8 @@
 import * as _angular_core from '@angular/core';
 import { OnInit, EventEmitter, OnChanges, SimpleChanges, Signal, OnDestroy, ElementRef, AfterViewInit, Renderer2 } from '@angular/core';
-import { Observable, OperatorFunction } from 'rxjs';
-import { BaseApiService, NotificationService as NotificationService$1, AsyncTaskQueryParams, PaginatedResponse as PaginatedResponse$1, AsyncTaskStatus, DownloadUrlResponse, MetadataExportRequest, AsyncTaskCreateResponse, BulkExportRequest, BulkExcelExportRequest, MetadataImportRequest, ValidationSchema, MetadataValidationRequest, SdrfFileValidationRequest, ChunkedImportRequest, WebSocketService, WebSocketMessage, DesktopRuntime, User, AuthService, LabGroupService, LabGroup, MetadataValidationConfig, ConfirmDialogService, TaskType, TaskStatus, LabGroupQueryResponse, ToastService, ResourceVisibility } from '@noatgnu/cupcake-core';
+import { WebSocketMessage, BaseApiService, NotificationService as NotificationService$1, AsyncTaskQueryParams, PaginatedResponse as PaginatedResponse$1, AsyncTaskStatus, DownloadUrlResponse, MetadataExportRequest, AsyncTaskCreateResponse, BulkExportRequest, BulkExcelExportRequest, MetadataImportRequest, ValidationSchema, MetadataValidationRequest, SdrfFileValidationRequest, ChunkedImportRequest, WebSocketService, DesktopRuntime, User, AuthService, LabGroupService, LabGroup, MetadataValidationConfig, ConfirmDialogService, TaskType, TaskStatus, LabGroupQueryResponse, ToastService, ResourceVisibility } from '@noatgnu/cupcake-core';
 export { WebSocketMessage } from '@noatgnu/cupcake-core';
+import { Observable, OperatorFunction } from 'rxjs';
 import * as _angular_forms from '@angular/forms';
 import { FormGroup, FormBuilder } from '@angular/forms';
 import { NgbActiveModal, NgbModal } from '@ng-bootstrap/ng-bootstrap';
@@ -57,7 +57,9 @@ declare enum OntologyType {
     MS_UNIQUE_VOCABULARIES = "ms_unique_vocabularies",
     PSI_MS = "psi_ms",
     BTO = "bto",
-    DOID = "doid"
+    DOID = "doid",
+    PROTOCOLS_IO_REAGENT = "protocols_io_reagent",
+    PROTOCOLS_IO_UNIT = "protocols_io_unit"
 }
 declare const OntologyTypeLabels: Record<OntologyType, string>;
 declare enum TemplatePermissionLevel {
@@ -355,6 +357,7 @@ interface MetadataTable extends BaseTimestampedModel {
     sampleRange?: string;
     canEdit?: boolean;
     sourceApp?: string;
+    shareToken?: string | null;
 }
 interface MetadataTableCreateRequest {
     name: string;
@@ -514,6 +517,9 @@ interface ColumnOverrideCommitResult {
         name: string;
     }[];
 }
+interface ShareTokenResponse {
+    shareToken: string;
+}
 
 interface MetadataTableTemplate extends BaseTimestampedModel {
     id: number;
@@ -732,6 +738,13 @@ interface OntologySuggestion {
     ontologyType: string;
     fullData?: any;
 }
+interface ExternalVocabularyUpdatedMessage extends WebSocketMessage {
+    type: 'external_vocabulary.updated';
+    ontology_type: string;
+    search_term: string;
+    stored: number;
+    user_id?: number;
+}
 
 interface UnimodSpecification {
     accession: string;
@@ -1114,6 +1127,18 @@ declare class MetadataTableService extends BaseApiService {
     suggestColumnMapping(tableId: number, file: File, algorithm: 'name' | 'position' | 'none'): Observable<ColumnOverrideSuggestResult>;
     previewColumnOverride(tableId: number, file: File, mapping: ColumnOverrideMappingEntry[], options: ColumnOverrideImportOptions): Observable<ColumnOverridePreviewResult>;
     commitColumnOverride(tableId: number, file: File, mapping: ColumnOverrideMappingEntry[], options: ColumnOverrideImportOptions): Observable<ColumnOverrideCommitResult>;
+    /**
+     * Generate a new share token for a metadata table (owner only)
+     */
+    generateShareToken(tableId: number): Observable<ShareTokenResponse>;
+    /**
+     * Revoke the share token for a metadata table (owner only)
+     */
+    revokeShareToken(tableId: number): Observable<void>;
+    /**
+     * Retrieve a shared table by its public token (no authentication required)
+     */
+    getSharedTable(token: string): Observable<MetadataTable>;
     static ɵfac: _angular_core.ɵɵFactoryDeclaration<MetadataTableService, never>;
     static ɵprov: _angular_core.ɵɵInjectableDeclaration<MetadataTableService>;
 }
@@ -1188,6 +1213,7 @@ declare class MetadataColumnService extends BaseApiService {
         count: number;
         customFilters: any;
         hasMore: boolean;
+        remotePending?: boolean;
     }>;
     /**
      * Validate value against column's ontology
@@ -1660,6 +1686,7 @@ declare class MetadataColumnTemplateService extends BaseApiService {
         count: number;
         customFilters: any;
         hasMore: boolean;
+        remotePending?: boolean;
     }>;
     /**
      * Get column templates grouped by (column_name, column_type)
@@ -1778,8 +1805,10 @@ interface OntologySuggestResponse {
     count: number;
     customFilters?: Record<string, any>;
     hasMore: boolean;
+    remotePending?: boolean;
 }
 declare class OntologySearchService extends BaseApiService {
+    private websocket;
     /**
      * Get ontology suggestions across all sources for SDRF validation
      *
@@ -1804,6 +1833,11 @@ declare class OntologySearchService extends BaseApiService {
      * Search specific ontology type
      */
     searchType(query: string, ontologyType: string, limit?: number): Observable<OntologySuggestResponse>;
+    /**
+     * Notifications that results from an external platform, such as protocols.io, were added to
+     * the local vocabulary after a search answered with remotePending.
+     */
+    vocabularyUpdates(): Observable<ExternalVocabularyUpdatedMessage>;
     static ɵfac: _angular_core.ɵɵFactoryDeclaration<OntologySearchService, never>;
     static ɵprov: _angular_core.ɵɵInjectableDeclaration<OntologySearchService>;
 }
@@ -2538,6 +2572,7 @@ declare class MetadataValueEditModal implements OnInit {
     editFormInvalid: Signal<boolean>;
     isLoading: _angular_core.WritableSignal<boolean>;
     isLoadingSuggestions: _angular_core.WritableSignal<boolean>;
+    private lastSearchTerm;
     searchType: _angular_core.WritableSignal<"icontains" | "istartswith">;
     isLoadingFavorites: _angular_core.WritableSignal<boolean>;
     userFavorites: _angular_core.WritableSignal<FavouriteMetadataOption[]>;
@@ -3391,17 +3426,21 @@ declare class MetadataTableDetails implements OnInit, OnDestroy {
     sortBy(field: string): void;
     getSortIcon(field: string): string;
     isSorted(field: string): boolean;
+    readonlyMode: boolean;
+    set preloadedTable(value: MetadataTable | null);
     isLoading: _angular_core.WritableSignal<boolean>;
     overrideSampleCount: _angular_core.WritableSignal<boolean>;
     applySchemaTemplates: _angular_core.WritableSignal<boolean>;
     table: _angular_core.WritableSignal<MetadataTable | null>;
     tableId: _angular_core.WritableSignal<number | null>;
-    viewMode: _angular_core.WritableSignal<"list" | "table">;
+    viewMode: _angular_core.WritableSignal<"table" | "list">;
     currentPage: _angular_core.WritableSignal<number>;
     pageSize: _angular_core.WritableSignal<number>;
     columnFilter: _angular_core.WritableSignal<string>;
     sortField: _angular_core.WritableSignal<string>;
     sortDirection: _angular_core.WritableSignal<"desc" | "asc">;
+    effectiveCanEdit: _angular_core.Signal<boolean>;
+    shareUrl: _angular_core.Signal<string | null>;
     hasColumns: _angular_core.Signal<boolean | undefined>;
     hasPools: _angular_core.Signal<boolean | undefined>;
     sortedColumns: _angular_core.Signal<MetadataColumn[]>;
@@ -3420,6 +3459,9 @@ declare class MetadataTableDetails implements OnInit, OnDestroy {
     switchToTableMode(): void;
     onPageChange(page: number): void;
     onPageSizeChange(size: number): void;
+    generateShareLink(): void;
+    revokeShareLink(): Promise<void>;
+    copyShareLink(): void;
     editTable(): void;
     triggerFileInput(): void;
     triggerExcelInput(): void;
@@ -3479,7 +3521,7 @@ declare class MetadataTableDetails implements OnInit, OnDestroy {
     private performColumnReorder;
     onColumnDrop(event: CdkDragDrop<MetadataColumn[]>): void;
     static ɵfac: _angular_core.ɵɵFactoryDeclaration<MetadataTableDetails, never>;
-    static ɵcmp: _angular_core.ɵɵComponentDeclaration<MetadataTableDetails, "ccv-metadata-table-details", never, {}, {}, never, never, true, never>;
+    static ɵcmp: _angular_core.ɵɵComponentDeclaration<MetadataTableDetails, "ccv-metadata-table-details", never, { "readonlyMode": { "alias": "readonlyMode"; "required": false; }; "preloadedTable": { "alias": "preloadedTable"; "required": false; }; }, {}, never, never, true, never>;
 }
 
 declare class SamplePoolDetailsModal {
@@ -3736,4 +3778,4 @@ declare class DualScrollDirective implements AfterViewInit, OnDestroy {
 }
 
 export { AsyncExportService, AsyncImportService, AsyncTaskService, AsyncTaskUIService, AsyncValidationService, COLUMN_TYPE_CONFIGS, ChunkedImportService, ChunkedUploadService, ColumnEditModal, ColumnOverrideImportModal, ColumnTemplateEditModal, ColumnTemplates, ColumnType, CupcakeVanilla, DesktopService, DualScrollDirective, ElectronService, ExcelExportModalComponent, ExcelLaunchService, FavoriteManagement, FavouriteMetadataOptionService, MSTermType, MetadataColumnAutofillModal, MetadataColumnHistoryModal, MetadataColumnService, MetadataColumnTemplateService, MetadataColumnTemplateShareService, MetadataManagementService, MetadataTableDetails, MetadataTableEditModal, MetadataTableService, MetadataTableTemplateEditModal, MetadataTableTemplateService, MetadataTableTemplates, MetadataValidationModal, MetadataValueEditModal, NotificationService, NotificationType, OFFICIAL_SDRF_COLUMNS, ONTOLOGY_TYPE_CONFIGS, OfficialColumnCacheService, OntologySearchService, OntologyType, OntologyTypeLabels, OntologyUtils, OpenInExcel, SDRFDefaultsService, SamplePoolCreateModal, SamplePoolDetailsModal, SamplePoolEditModal, SamplePoolService, SchemaSelectionModal, SchemaService, SdrfAgeInput, SdrfCleavageInput, SdrfColumnCategory, SdrfModificationInput, SdrfMzRangeInput, SdrfNumberWithUnitInput, SdrfSelectInput, SdrfSpikedCompoundInput, SdrfSyntaxService, SearchReplaceModal, TableCreationModalComponent, TemplatePermissionLabels, TemplatePermissionLevel, TemplateSchemaSelectionModal, ValidationResultsModal, Websocket, createSyntheticColumnFromTemplate, getRequiredSdrfColumns, getSdrfColumnByName, getSdrfColumnsByCategory, isSdrfColumnRequired, isUnimodFullData };
-export type { AdvancedAutofillRequest, AdvancedAutofillResponse, AgeFormat, ApiError, ApiResponse, BTOTerm, BaseTimestampedModel, CellOntology, ChEBICompound, ChunkedFileImportRequest, ChunkedImportProgress, ChunkedUploadCompletionRequest, ChunkedUploadCompletionResponse, ChunkedUploadRequest, ChunkedUploadResponse, ChunkedUploadStatus, CleavageAgentDetails, ColumnConfig, ColumnHistoryModalConfig, ColumnInputType, ColumnOverrideCommitResult, ColumnOverrideImportModalConfig, ColumnOverrideImportOptions, ColumnOverrideMappingEntry, ColumnOverrideMatchedColumn, ColumnOverridePreviewResult, ColumnOverrideSuggestResult, ColumnTypeConfig, ColumnValidator, DiseaseOntologyTerm, ExcelExportOptions, ExcelLaunchClaimRequest, ExcelLaunchClaimResponse, ExcelLaunchCode, ExcelLaunchRequest, FavouriteMetadataOption, FavouriteMetadataOptionCreateRequest, FavouriteMetadataOptionQueryParams, FavouriteMetadataOptionUpdateRequest, GroupedColumnTemplate, GroupedColumnTemplateQueryParams, HumanDisease, MSUniqueVocabularies, MetadataColumn, MetadataColumnAutofillConfig, MetadataColumnCreateRequest, MetadataColumnHistoryChange, MetadataColumnHistoryRecord, MetadataColumnHistoryResponse, MetadataColumnHistorySnapshot, MetadataColumnModifier, MetadataColumnQueryParams, MetadataColumnTemplate, MetadataColumnTemplateCreateRequest, MetadataColumnTemplateQueryParams, MetadataColumnTemplateShare, MetadataColumnTemplateShareCreateRequest, MetadataColumnTemplateShareQueryParams, MetadataColumnTemplateUpdateRequest, MetadataColumnUpdateRequest, MetadataQueryParams, MetadataTable, MetadataTableCreateRequest, MetadataTableQueryParams, MetadataTableQueryResponse, MetadataTableTemplate, MetadataTableTemplateCreateRequest, MetadataTableTemplateQueryParams, MetadataTableTemplateQueryResponse, MetadataTableTemplateSyncRequest, MetadataTableTemplateSyncResponse, MetadataTableTemplateUpdateRequest, MetadataTableUpdateRequest, MetadataValueEditConfig, ModificationParameters, MondoDisease, MzRange, NCBITaxonomy, OntologyCustomFilter, OntologySuggestParams, OntologySuggestResponse, OntologySuggestion, OntologyTypeConfig, PSIMSOntology, PaginatedResponse, PooledSample, SampleCountConfirmationError, SampleCountValidationRequest, SampleCountValidationResponse, SampleCountValidationResult, SamplePool, SamplePoolCreateRequest, SamplePoolQueryParams, SamplePoolUpdateRequest, Schema, SchemaColumn, SchemaLayer, SchemaQueryParams, SchemaSelectionResult, SchemasByLayer, SdrfColumnConfig, SearchReplaceConfig, Species, SpikedCompound, SubcellularLocation, SyntaxType, SyntheticPeptide, TableCreationData, TemplateSchemaSelectionResult, Tissue, UberonAnatomy, Unimod, UnimodFullData, UnimodSpecification, ValidationResult, ValidationResults, VariationSpec, VariationSpecList, VariationSpecPattern, VariationSpecRange };
+export type { AdvancedAutofillRequest, AdvancedAutofillResponse, AgeFormat, ApiError, ApiResponse, BTOTerm, BaseTimestampedModel, CellOntology, ChEBICompound, ChunkedFileImportRequest, ChunkedImportProgress, ChunkedUploadCompletionRequest, ChunkedUploadCompletionResponse, ChunkedUploadRequest, ChunkedUploadResponse, ChunkedUploadStatus, CleavageAgentDetails, ColumnConfig, ColumnHistoryModalConfig, ColumnInputType, ColumnOverrideCommitResult, ColumnOverrideImportModalConfig, ColumnOverrideImportOptions, ColumnOverrideMappingEntry, ColumnOverrideMatchedColumn, ColumnOverridePreviewResult, ColumnOverrideSuggestResult, ColumnTypeConfig, ColumnValidator, DiseaseOntologyTerm, ExcelExportOptions, ExcelLaunchClaimRequest, ExcelLaunchClaimResponse, ExcelLaunchCode, ExcelLaunchRequest, ExternalVocabularyUpdatedMessage, FavouriteMetadataOption, FavouriteMetadataOptionCreateRequest, FavouriteMetadataOptionQueryParams, FavouriteMetadataOptionUpdateRequest, GroupedColumnTemplate, GroupedColumnTemplateQueryParams, HumanDisease, MSUniqueVocabularies, MetadataColumn, MetadataColumnAutofillConfig, MetadataColumnCreateRequest, MetadataColumnHistoryChange, MetadataColumnHistoryRecord, MetadataColumnHistoryResponse, MetadataColumnHistorySnapshot, MetadataColumnModifier, MetadataColumnQueryParams, MetadataColumnTemplate, MetadataColumnTemplateCreateRequest, MetadataColumnTemplateQueryParams, MetadataColumnTemplateShare, MetadataColumnTemplateShareCreateRequest, MetadataColumnTemplateShareQueryParams, MetadataColumnTemplateUpdateRequest, MetadataColumnUpdateRequest, MetadataQueryParams, MetadataTable, MetadataTableCreateRequest, MetadataTableQueryParams, MetadataTableQueryResponse, MetadataTableTemplate, MetadataTableTemplateCreateRequest, MetadataTableTemplateQueryParams, MetadataTableTemplateQueryResponse, MetadataTableTemplateSyncRequest, MetadataTableTemplateSyncResponse, MetadataTableTemplateUpdateRequest, MetadataTableUpdateRequest, MetadataValueEditConfig, ModificationParameters, MondoDisease, MzRange, NCBITaxonomy, OntologyCustomFilter, OntologySuggestParams, OntologySuggestResponse, OntologySuggestion, OntologyTypeConfig, PSIMSOntology, PaginatedResponse, PooledSample, SampleCountConfirmationError, SampleCountValidationRequest, SampleCountValidationResponse, SampleCountValidationResult, SamplePool, SamplePoolCreateRequest, SamplePoolQueryParams, SamplePoolUpdateRequest, Schema, SchemaColumn, SchemaLayer, SchemaQueryParams, SchemaSelectionResult, SchemasByLayer, SdrfColumnConfig, SearchReplaceConfig, ShareTokenResponse, Species, SpikedCompound, SubcellularLocation, SyntaxType, SyntheticPeptide, TableCreationData, TemplateSchemaSelectionResult, Tissue, UberonAnatomy, Unimod, UnimodFullData, UnimodSpecification, ValidationResult, ValidationResults, VariationSpec, VariationSpecList, VariationSpecPattern, VariationSpecRange };