@noatgnu/cupcake-vanilla 1.3.17 → 1.3.20

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@noatgnu/cupcake-vanilla",
-  "version": "1.3.17",
+  "version": "1.3.20",
   "description": "An extension for cupcake-core that provides additional api and interfaces for facility to manage and compose metadata.",
   "author": "Toan Phung",
   "license": "MIT",

package/types/noatgnu-cupcake-vanilla.d.ts

@@ -1,7 +1,7 @@
 import * as _angular_core from '@angular/core';
-import { OnInit, EventEmitter, OnChanges, SimpleChanges, OnDestroy, ElementRef, AfterViewInit, Renderer2 } from '@angular/core';
+import { OnInit, EventEmitter, OnChanges, SimpleChanges, Signal, OnDestroy, ElementRef, AfterViewInit, Renderer2 } from '@angular/core';
 import { Observable, OperatorFunction } from 'rxjs';
-import { BaseApiService, NotificationService as NotificationService$1, AsyncTaskQueryParams, PaginatedResponse as PaginatedResponse$1, AsyncTaskStatus, DownloadUrlResponse, MetadataExportRequest, AsyncTaskCreateResponse, BulkExportRequest, BulkExcelExportRequest, MetadataImportRequest, ValidationSchema, MetadataValidationRequest, SdrfFileValidationRequest, ChunkedImportRequest, WebSocketService, WebSocketMessage, DesktopRuntime, User, AuthService, LabGroupService, LabGroup, MetadataValidationConfig, TaskType, TaskStatus, LabGroupQueryResponse, ToastService, ResourceVisibility } from '@noatgnu/cupcake-core';
+import { BaseApiService, NotificationService as NotificationService$1, AsyncTaskQueryParams, PaginatedResponse as PaginatedResponse$1, AsyncTaskStatus, DownloadUrlResponse, MetadataExportRequest, AsyncTaskCreateResponse, BulkExportRequest, BulkExcelExportRequest, MetadataImportRequest, ValidationSchema, MetadataValidationRequest, SdrfFileValidationRequest, ChunkedImportRequest, WebSocketService, WebSocketMessage, DesktopRuntime, User, AuthService, LabGroupService, LabGroup, MetadataValidationConfig, ConfirmDialogService, TaskType, TaskStatus, LabGroupQueryResponse, ToastService, ResourceVisibility } from '@noatgnu/cupcake-core';
 export { WebSocketMessage } from '@noatgnu/cupcake-core';
 import * as _angular_forms from '@angular/forms';
 import { FormGroup, FormBuilder } from '@angular/forms';
@@ -921,6 +921,7 @@ interface MetadataTableQueryParams {
     isPublished?: boolean;
     isLocked?: boolean;
     showShared?: boolean;
+    adminView?: boolean;
     limit?: number;
     offset?: number;
     ordering?: string;
@@ -2334,7 +2335,7 @@ declare class SdrfAgeInput implements OnInit {
     private fb;
     private sdrfSyntax;
     ageForm: FormGroup;
-    isRange: boolean;
+    isRange: _angular_core.WritableSignal<boolean>;
     constructor();
     ngOnInit(): void;
     private parseAndSetValue;
@@ -2509,6 +2510,7 @@ declare class MetadataValueEditModal implements OnInit {
         sampleIndices: number[];
     }>;
     editForm: FormGroup;
+    editFormInvalid: Signal<boolean>;
     isLoading: _angular_core.WritableSignal<boolean>;
     isLoadingSuggestions: _angular_core.WritableSignal<boolean>;
     searchType: _angular_core.WritableSignal<"icontains" | "istartswith">;
@@ -2641,6 +2643,7 @@ declare class MetadataValidationModal implements OnInit {
         skip_ontology: _angular_forms.FormControl<boolean | null>;
         include_pools: _angular_forms.FormControl<boolean | null>;
     }>;
+    readonly validationFormInvalid: Signal<boolean>;
     ngOnInit(): void;
     loadAvailableSchemas(): void;
     toggleSchema(schemaName: string): void;
@@ -2658,14 +2661,16 @@ declare class MetadataTableEditModal implements OnInit {
     private modalService;
     private metadataTableService;
     private labGroupService;
+    private confirmDialog;
     table?: MetadataTable;
     isCreateMode: boolean;
     tableSaved: EventEmitter<MetadataTable>;
     editForm: FormGroup;
+    editFormInvalid: Signal<boolean>;
     isLoading: _angular_core.WritableSignal<boolean>;
     availableLabGroups: _angular_core.WritableSignal<LabGroup[]>;
     isLoadingLabGroups: _angular_core.WritableSignal<boolean>;
-    constructor(fb: FormBuilder, activeModal: NgbActiveModal, modalService: NgbModal, metadataTableService: MetadataTableService, labGroupService: LabGroupService);
+    constructor(fb: FormBuilder, activeModal: NgbActiveModal, modalService: NgbModal, metadataTableService: MetadataTableService, labGroupService: LabGroupService, confirmDialog: ConfirmDialogService);
     ngOnInit(): void;
     loadLabGroups(): void;
     onSubmit(): void;
@@ -2747,6 +2752,7 @@ declare class MetadataTableTemplates implements OnInit {
     private modalService;
     private toastService;
     private asyncTaskService;
+    private confirmDialog;
     searchForm: FormGroup;
     private searchParams;
     private labGroupParams;
@@ -2766,7 +2772,7 @@ declare class MetadataTableTemplates implements OnInit {
     showLabGroupsPagination: _angular_core.Signal<boolean>;
     availableSchemas: _angular_core.WritableSignal<any[]>;
     isLoadingSchemas: _angular_core.WritableSignal<boolean>;
-    constructor(fb: FormBuilder, metadataTableTemplateService: MetadataTableTemplateService, labGroupService: LabGroupService, modalService: NgbModal, toastService: ToastService, asyncTaskService: AsyncTaskUIService);
+    constructor(fb: FormBuilder, metadataTableTemplateService: MetadataTableTemplateService, labGroupService: LabGroupService, modalService: NgbModal, toastService: ToastService, asyncTaskService: AsyncTaskUIService, confirmDialog: ConfirmDialogService);
     ngOnInit(): void;
     private loadInitialData;
     private loadLabGroupsWithParams;
@@ -2779,7 +2785,7 @@ declare class MetadataTableTemplates implements OnInit {
     onLabGroupsPageChange(page: number): void;
     createTemplate(): void;
     editTemplate(template: MetadataTableTemplate): void;
-    deleteTemplate(template: MetadataTableTemplate): void;
+    deleteTemplate(template: MetadataTableTemplate): Promise<void>;
     duplicateTemplate(template: MetadataTableTemplate): void;
     private openTemplateModal;
     private handleTemplateSave;
@@ -2803,7 +2809,7 @@ declare class MetadataTableTemplates implements OnInit {
      * Sync template columns from linked schemas.
      * Updates columns with latest ontology settings and adds new columns from schemas.
      */
-    syncTemplateFromSchemas(template: MetadataTableTemplate): void;
+    syncTemplateFromSchemas(template: MetadataTableTemplate): Promise<void>;
     static ɵfac: _angular_core.ɵɵFactoryDeclaration<MetadataTableTemplates, never>;
     static ɵcmp: _angular_core.ɵɵComponentDeclaration<MetadataTableTemplates, "ccv-metadata-table-templates", never, {}, {}, never, never, true, never>;
 }
@@ -2815,23 +2821,25 @@ declare class MetadataTableTemplateEditModal implements OnInit {
     private metadataTableTemplateService;
     private metadataColumnService;
     private toastService;
+    private confirmDialog;
     template: MetadataTableTemplate | null;
     labGroups: LabGroup[];
     isEdit: boolean;
     templateSaved: EventEmitter<Partial<MetadataTableTemplate>>;
     editForm: FormGroup;
+    editFormInvalid: Signal<boolean>;
     isLoading: _angular_core.WritableSignal<boolean>;
     _templateColumns: _angular_core.WritableSignal<MetadataColumn[]>;
     selectedColumnIds: _angular_core.WritableSignal<Set<number>>;
     recentlyModifiedColumnId: _angular_core.WritableSignal<number | null>;
-    templateColumns: _angular_core.Signal<MetadataColumn[]>;
-    allColumnsSelected: _angular_core.Signal<boolean>;
-    someColumnsSelected: _angular_core.Signal<boolean>;
+    templateColumns: Signal<MetadataColumn[]>;
+    allColumnsSelected: Signal<boolean>;
+    someColumnsSelected: Signal<boolean>;
     visibilityOptions: {
         value: ResourceVisibility;
         label: string;
     }[];
-    constructor(fb: FormBuilder, activeModal: NgbActiveModal, modalService: NgbModal, metadataTableTemplateService: MetadataTableTemplateService, metadataColumnService: MetadataColumnService, toastService: ToastService);
+    constructor(fb: FormBuilder, activeModal: NgbActiveModal, modalService: NgbModal, metadataTableTemplateService: MetadataTableTemplateService, metadataColumnService: MetadataColumnService, toastService: ToastService, confirmDialog: ConfirmDialogService);
     ngOnInit(): void;
     private populateForm;
     onSubmit(): void;
@@ -2844,11 +2852,11 @@ declare class MetadataTableTemplateEditModal implements OnInit {
     addColumnWithAutoReorder(): void;
     editColumn(column: MetadataColumn): void;
     duplicateColumn(column: MetadataColumn): void;
-    removeColumn(column: MetadataColumn): void;
+    removeColumn(column: MetadataColumn): Promise<void>;
     toggleColumnSelection(columnId: number): void;
     toggleAllColumns(): void;
     bulkToggleStaffOnly(staffOnly: boolean): void;
-    bulkDeleteColumns(): void;
+    bulkDeleteColumns(): Promise<void>;
     onColumnDrop(event: CdkDragDrop<MetadataColumn[]>): void;
     private openColumnModal;
     private handleColumnSave;
@@ -2876,6 +2884,7 @@ declare class ColumnEditModal implements OnInit {
     isEdit: boolean;
     columnSaved: EventEmitter<Partial<MetadataColumn>>;
     editForm: FormGroup;
+    editFormInvalid: Signal<boolean>;
     isLoading: _angular_core.WritableSignal<boolean>;
     showAdvancedMode: _angular_core.WritableSignal<boolean>;
     selectedOntologyConfig: OntologyTypeConfig | null;
@@ -2885,7 +2894,7 @@ declare class ColumnEditModal implements OnInit {
     selectedTemplateId: number | string;
     selectedTemplate: MetadataColumnTemplate | null;
     templates: MetadataColumnTemplate[];
-    isLoadingTemplates: boolean;
+    isLoadingTemplates: _angular_core.WritableSignal<boolean>;
     currentTemplatePage: number;
     templatePageSize: number;
     totalTemplates: number;
@@ -3003,6 +3012,7 @@ declare class TableCreationModalComponent implements OnInit {
     selectedLabGroup?: number;
     tableCreated: EventEmitter<TableCreationData>;
     tableForm: FormGroup;
+    tableFormInvalid: Signal<boolean>;
     isCreating: boolean;
     errorMessage: string | null;
     constructor(fb: FormBuilder, activeModal: NgbActiveModal);
@@ -3053,6 +3063,7 @@ declare class ColumnTemplates implements OnInit {
     private labGroupService;
     private schemaService;
     private modalService;
+    private confirmDialog;
     searchForm: FormGroup;
     private searchParams;
     private labGroupParams;
@@ -3066,7 +3077,7 @@ declare class ColumnTemplates implements OnInit {
     labGroupsTotalItems: _angular_core.WritableSignal<number>;
     columnFilter: _angular_core.WritableSignal<string>;
     sortField: _angular_core.WritableSignal<string>;
-    sortDirection: _angular_core.WritableSignal<"asc" | "desc">;
+    sortDirection: _angular_core.WritableSignal<"desc" | "asc">;
     viewMode: _angular_core.WritableSignal<"flat" | "grouped">;
     templatesData: _angular_core.WritableSignal<{
         count: number;
@@ -3095,7 +3106,7 @@ declare class ColumnTemplates implements OnInit {
     hasGroupedTemplates: _angular_core.Signal<boolean>;
     showGroupedPagination: _angular_core.Signal<boolean>;
     filteredTemplates: _angular_core.Signal<MetadataColumnTemplate[]>;
-    constructor(fb: FormBuilder, metadataColumnTemplateService: MetadataColumnTemplateService, labGroupService: LabGroupService, schemaService: SchemaService, modalService: NgbModal);
+    constructor(fb: FormBuilder, metadataColumnTemplateService: MetadataColumnTemplateService, labGroupService: LabGroupService, schemaService: SchemaService, modalService: NgbModal, confirmDialog: ConfirmDialogService);
     ngOnInit(): void;
     private loadInitialData;
     private loadSchemas;
@@ -3125,7 +3136,7 @@ declare class ColumnTemplates implements OnInit {
     editTemplate(template: MetadataColumnTemplate): void;
     private openTemplateModal;
     private handleTemplateSave;
-    deleteTemplate(template: MetadataColumnTemplate): void;
+    deleteTemplate(template: MetadataColumnTemplate): Promise<void>;
     duplicateTemplate(template: MetadataColumnTemplate): void;
     private refreshTemplates;
     setViewMode(mode: 'flat' | 'grouped'): void;
@@ -3153,6 +3164,7 @@ declare class ColumnTemplateEditModal implements OnInit {
     isEdit: boolean;
     templateSaved: EventEmitter<Partial<MetadataColumnTemplate>>;
     editForm: FormGroup;
+    editFormInvalid: Signal<boolean>;
     isLoading: _angular_core.WritableSignal<boolean>;
     isLoadingSuggestions: _angular_core.WritableSignal<boolean>;
     Object: ObjectConstructor;
@@ -3194,13 +3206,14 @@ declare class FavoriteManagement implements OnInit {
     scopeFilter: _angular_core.WritableSignal<string>;
     labGroupFilter: _angular_core.WritableSignal<string>;
     columnTypeFilter: _angular_core.WritableSignal<string>;
-    filteredFavorites: _angular_core.Signal<FavouriteMetadataOption[]>;
+    filteredFavorites: Signal<FavouriteMetadataOption[]>;
     currentPage: _angular_core.WritableSignal<number>;
     pageSize: _angular_core.WritableSignal<number>;
-    paginatedFavorites: _angular_core.Signal<FavouriteMetadataOption[]>;
-    totalPages: _angular_core.Signal<number>;
+    paginatedFavorites: Signal<FavouriteMetadataOption[]>;
+    totalPages: Signal<number>;
     searchForm: FormGroup;
     editForm: FormGroup;
+    editFormInvalid: Signal<boolean>;
     isEditMode: _angular_core.WritableSignal<boolean>;
     editingFavorite: _angular_core.WritableSignal<FavouriteMetadataOption | null>;
     showEditModal: _angular_core.WritableSignal<boolean>;
@@ -3212,12 +3225,13 @@ declare class FavoriteManagement implements OnInit {
     private toastService;
     private modalService;
     private authService;
+    private confirmDialog;
     specialSyntaxType: _angular_core.WritableSignal<SyntaxType | null>;
     showSpecialInput: _angular_core.WritableSignal<boolean>;
     specialInputValue: _angular_core.WritableSignal<string>;
     currentUser: _angular_core.Signal<User | null>;
-    isAdmin: _angular_core.Signal<boolean>;
-    currentUserId: _angular_core.Signal<number | null>;
+    isAdmin: Signal<boolean>;
+    currentUserId: Signal<number | null>;
     userLabGroups: _angular_core.WritableSignal<LabGroup[]>;
     userLabGroupsLoaded: _angular_core.WritableSignal<boolean>;
     selectedOntologyValue: string | null;
@@ -3243,7 +3257,7 @@ declare class FavoriteManagement implements OnInit {
     openCreateModal(): void;
     openEditModal(favorite: FavouriteMetadataOption): void;
     saveFavorite(): void;
-    deleteFavorite(favorite: FavouriteMetadataOption): void;
+    deleteFavorite(favorite: FavouriteMetadataOption): Promise<void>;
     closeEditModal(): void;
     onPageChange(page: number): void;
     onPageSizeChange(size: number): void;
@@ -3305,6 +3319,7 @@ declare class SearchReplaceModal {
     activeModal: NgbActiveModal;
     config: SearchReplaceConfig;
     searchReplaceForm: FormGroup;
+    searchReplaceFormInvalid: Signal<boolean>;
     isProcessing: _angular_core.WritableSignal<boolean>;
     result: _angular_core.WritableSignal<{
         message: string;
@@ -3339,6 +3354,7 @@ declare class MetadataTableDetails implements OnInit, OnDestroy {
     private asyncTaskService;
     private modalService;
     private officialColumnCache;
+    private confirmDialog;
     private destroy$;
     fileInput: ElementRef<HTMLInputElement>;
     excelInput: ElementRef<HTMLInputElement>;
@@ -3360,7 +3376,7 @@ declare class MetadataTableDetails implements OnInit, OnDestroy {
     pageSize: _angular_core.WritableSignal<number>;
     columnFilter: _angular_core.WritableSignal<string>;
     sortField: _angular_core.WritableSignal<string>;
-    sortDirection: _angular_core.WritableSignal<"asc" | "desc">;
+    sortDirection: _angular_core.WritableSignal<"desc" | "asc">;
     hasColumns: _angular_core.Signal<boolean | undefined>;
     hasPools: _angular_core.Signal<boolean | undefined>;
     sortedColumns: _angular_core.Signal<MetadataColumn[]>;
@@ -3370,7 +3386,7 @@ declare class MetadataTableDetails implements OnInit, OnDestroy {
     poolTableRows: _angular_core.Signal<any[]>;
     paginatedRows: _angular_core.Signal<any[]>;
     totalPages: _angular_core.Signal<number>;
-    constructor(route: ActivatedRoute, router: Router, metadataTableService: MetadataTableService, asyncExportService: AsyncExportService, chunkedUploadService: ChunkedUploadService, samplePoolService: SamplePoolService, metadataColumnService: MetadataColumnService, toastService: ToastService, asyncTaskService: AsyncTaskUIService, modalService: NgbModal, officialColumnCache: OfficialColumnCacheService);
+    constructor(route: ActivatedRoute, router: Router, metadataTableService: MetadataTableService, asyncExportService: AsyncExportService, chunkedUploadService: ChunkedUploadService, samplePoolService: SamplePoolService, metadataColumnService: MetadataColumnService, toastService: ToastService, asyncTaskService: AsyncTaskUIService, modalService: NgbModal, officialColumnCache: OfficialColumnCacheService, confirmDialog: ConfirmDialogService);
     ngOnInit(): void;
     ngOnDestroy(): void;
     private setupAsyncTaskRefreshListener;
@@ -3383,13 +3399,13 @@ declare class MetadataTableDetails implements OnInit, OnDestroy {
     editTable(): void;
     triggerFileInput(): void;
     triggerExcelInput(): void;
-    importSdrf(event: Event): void;
-    importExcel(event: Event): void;
+    importSdrf(event: Event): Promise<void>;
+    importExcel(event: Event): Promise<void>;
     exportToSdrf(format?: 'sdrf' | 'excel'): void;
     private performExcelExport;
     private performSdrfExport;
     private handleExportRequest;
-    deleteTable(): void;
+    deleteTable(): Promise<void>;
     getTableStatusBadge(): string;
     getTableStatusClass(): string;
     getColumnTypeIcon(column: MetadataColumn): string;
@@ -3408,7 +3424,7 @@ declare class MetadataTableDetails implements OnInit, OnDestroy {
     viewPoolDetails(pool: SamplePool): void;
     editPool(pool: SamplePool): void;
     createPool(): void;
-    deletePool(pool: SamplePool): void;
+    deletePool(pool: SamplePool): Promise<void>;
     editColumnValue(column: MetadataColumn): void;
     toggleColumnHidden(column: MetadataColumn): void;
     autofillColumnValues(column: MetadataColumn): void;
@@ -3420,7 +3436,7 @@ declare class MetadataTableDetails implements OnInit, OnDestroy {
     editPoolColumnValue(pool: SamplePool, column: any): void;
     editSampleColumnValue(column: MetadataColumn, sampleIndex: number): void;
     private getSampleColumnValue;
-    removeColumn(column: MetadataColumn): void;
+    removeColumn(column: MetadataColumn): Promise<void>;
     /**
      * Open modal to add a new column with automatic reordering
      */
@@ -3462,6 +3478,7 @@ declare class SamplePoolEditModal implements OnInit {
     maxSampleCount: number;
     poolSaved: EventEmitter<SamplePool>;
     editForm: FormGroup;
+    editFormInvalid: Signal<boolean>;
     isLoading: _angular_core.WritableSignal<boolean>;
     private fb;
     private activeModal;
@@ -3497,6 +3514,7 @@ declare class SamplePoolCreateModal implements OnInit {
     poolCreated: EventEmitter<SamplePool>;
     Math: Math;
     createForm: FormGroup;
+    createFormInvalid: Signal<boolean>;
     isLoading: _angular_core.WritableSignal<boolean>;
     samples: _angular_core.WritableSignal<SampleSelectionItem[]>;
     pooledOnlySamples: _angular_core.WritableSignal<number[]>;
@@ -3504,10 +3522,10 @@ declare class SamplePoolCreateModal implements OnInit {
     selectionMode: _angular_core.WritableSignal<"range" | "manual">;
     currentPage: _angular_core.WritableSignal<number>;
     samplesPerPage: number;
-    sourceNameColumn: _angular_core.Signal<MetadataColumn | undefined>;
-    assayNameColumn: _angular_core.Signal<MetadataColumn | undefined>;
-    fractionIdentifierColumn: _angular_core.Signal<MetadataColumn | undefined>;
-    labelColumn: _angular_core.Signal<MetadataColumn | undefined>;
+    sourceNameColumn: Signal<MetadataColumn | undefined>;
+    assayNameColumn: Signal<MetadataColumn | undefined>;
+    fractionIdentifierColumn: Signal<MetadataColumn | undefined>;
+    labelColumn: Signal<MetadataColumn | undefined>;
     constructor(fb: FormBuilder, activeModal: NgbActiveModal, samplePoolService: SamplePoolService, toastService: ToastService);
     ngOnInit(): void;
     private initializeSamples;