@noatgnu/cupcake-vanilla 1.2.8 → 1.2.9

package/index.d.ts

@@ -483,12 +483,6 @@ interface OntologySuggestion {
     ontologyType: string;
     fullData?: any;
 }
-interface OntologySuggestionResponse {
-    count: number;
-    next?: string;
-    previous?: string;
-    results: OntologySuggestion[];
-}
 
 interface UnimodSpecification {
     accession: string;
@@ -1451,14 +1445,48 @@ declare class NotificationService extends NotificationService$1 {
     static ɵprov: i0.ɵɵInjectableDeclaration<NotificationService>;
 }
 
+interface OntologySuggestParams {
+    q: string;
+    type?: string;
+    match?: 'contains' | 'startswith';
+    limit?: number;
+    customFilters?: Record<string, any>;
+}
+interface OntologySuggestResponse {
+    ontologyType: string;
+    suggestions: OntologySuggestion[];
+    searchTerm: string;
+    searchType: string;
+    limit: number;
+    count: number;
+    customFilters?: Record<string, any>;
+    hasMore: boolean;
+}
 declare class OntologySearchService extends BaseApiService {
     /**
      * Get ontology suggestions across all sources for SDRF validation
+     *
+     * @param params Query parameters
+     * @param params.q Search query (required, min 2 characters)
+     * @param params.type Ontology type to search (optional)
+     * @param params.match Match type - 'contains' or 'startswith' (default: 'contains')
+     * @param params.limit Maximum number of results (default: 50)
+     * @param params.customFilters Custom filters to apply (optional)
+     *   Example: {"organism": "Homo sapiens"} or {"organism": {"icontains": "human"}}
+     */
+    suggest(params: OntologySuggestParams): Observable<OntologySuggestResponse>;
+    /**
+     * Get ontology suggestions for a specific ontology type with custom filters
+     */
+    suggestWithFilters(query: string, ontologyType: string, customFilters: Record<string, any>, limit?: number): Observable<OntologySuggestResponse>;
+    /**
+     * Search across multiple ontology types
+     */
+    searchAll(query: string, limit?: number): Observable<OntologySuggestResponse>;
+    /**
+     * Search specific ontology type
      */
-    suggest(params?: {
-        query?: string;
-        sources?: string[];
-    }): Observable<OntologySuggestion[]>;
+    searchType(query: string, ontologyType: string, limit?: number): Observable<OntologySuggestResponse>;
     static ɵfac: i0.ɵɵFactoryDeclaration<OntologySearchService, never>;
     static ɵprov: i0.ɵɵInjectableDeclaration<OntologySearchService>;
 }
@@ -1970,6 +1998,7 @@ declare class MetadataValueEditModal implements OnInit {
     private metadataColumnService;
     private metadataColumnTemplateService;
     private labGroupService;
+    private ontologySearchService;
     config: MetadataValueEditConfig;
     valueSaved: EventEmitter<string | {
         value: string;
@@ -1993,7 +2022,7 @@ declare class MetadataValueEditModal implements OnInit {
     specialInputValue: i0.WritableSignal<string>;
     selectedSampleIndices: i0.WritableSignal<Set<number>>;
     showSamplePanel: i0.WritableSignal<boolean>;
-    constructor(fb: FormBuilder, activeModal: NgbActiveModal, authService: AuthService, favouriteMetadataOptionService: FavouriteMetadataOptionService, metadataColumnService: MetadataColumnService, metadataColumnTemplateService: MetadataColumnTemplateService, labGroupService: LabGroupService);
+    constructor(fb: FormBuilder, activeModal: NgbActiveModal, authService: AuthService, favouriteMetadataOptionService: FavouriteMetadataOptionService, metadataColumnService: MetadataColumnService, metadataColumnTemplateService: MetadataColumnTemplateService, labGroupService: LabGroupService, ontologySearchService: OntologySearchService);
     ngOnInit(): void;
     onCancel(): void;
     onClose(): void;
@@ -2359,8 +2388,7 @@ declare class ColumnEditModal implements OnInit {
     toggleOfficialColumns(): void;
     selectOfficialColumn(column: SdrfColumnConfig): void;
     private filterOfficialColumns;
-    private getDefaultOntologyTypeForColumn;
-    private shouldEnableTypeaheadForColumn;
+    private getOntologyConfigForColumn;
     private isColumnMandatory;
     showTemplateSwapOptions(): void;
     swapToTemplate(template: MetadataColumnTemplate): void;
@@ -2471,4 +2499,4 @@ declare class CupcakeVanilla {
 }
 
 export { AdminWebSocketService, AsyncExportService, AsyncImportService, AsyncTaskService, AsyncTaskUIService, AsyncValidationService, COLUMN_TYPE_CONFIGS, ChunkedImportService, ChunkedUploadService, ColumnEditModal, ColumnType, CupcakeVanilla, ElectronService, ExcelExportModalComponent, FavouriteMetadataOptionService, MSTermType, MetadataColumnService, MetadataColumnTemplateService, MetadataColumnTemplateShareService, MetadataManagementService, MetadataTableEditModal, MetadataTableService, MetadataTableTemplateEditModal, MetadataTableTemplateService, MetadataTableTemplates, MetadataValidationModal, MetadataValueEditModal, NotificationService, NotificationType, OFFICIAL_SDRF_COLUMNS, ONTOLOGY_TYPE_CONFIGS, OntologySearchService, OntologyType, OntologyTypeLabels, OntologyUtils, SDRFDefaultsService, SamplePoolService, SchemaSelectionModal, SchemaService, SdrfAgeInput, SdrfCleavageInput, SdrfColumnCategory, SdrfModificationInput, SdrfSpikedCompoundInput, SdrfSyntaxService, TASK_STATUS_COLORS, TASK_STATUS_LABELS, TASK_TYPE_LABELS, TableCreationModalComponent, TemplatePermissionLabels, TemplatePermissionLevel, TemplateSchemaSelectionModal, ValidationResultsModal, Websocket, getRequiredSdrfColumns, getSdrfColumnByName, getSdrfColumnsByCategory, isSdrfColumnRequired, isUnimodFullData };
-export type { AgeFormat, ApiResponse, AsyncTaskCreateResponse, AsyncTaskQueryParams, AsyncTaskStatus, BaseTimestampedModel, BulkExcelExportRequest, BulkExportRequest, CellOntology, ChEBICompound, ChunkedFileImportRequest, ChunkedImportProgress, ChunkedImportRequest, ChunkedUploadCompletionRequest, ChunkedUploadCompletionResponse, ChunkedUploadRequest, ChunkedUploadResponse, ChunkedUploadStatus, CleavageAgentDetails, ColumnTypeConfig, DownloadUrlResponse, ElectronAPI, ExcelExportOptions, FavouriteMetadataOption, FavouriteMetadataOptionCreateRequest, FavouriteMetadataOptionQueryParams, FavouriteMetadataOptionUpdateRequest, HumanDisease, MSUniqueVocabularies, MetadataColumn, MetadataColumnCreateRequest, MetadataColumnModifier, MetadataColumnQueryParams, MetadataColumnTemplate, MetadataColumnTemplateCreateRequest, MetadataColumnTemplateQueryParams, MetadataColumnTemplateShare, MetadataColumnTemplateShareCreateRequest, MetadataColumnTemplateShareQueryParams, MetadataColumnTemplateUpdateRequest, MetadataColumnUpdateRequest, MetadataExportRequest, MetadataImportRequest, MetadataQueryParams, MetadataTable, MetadataTableCreateRequest, MetadataTableQueryParams, MetadataTableQueryResponse, MetadataTableTemplate, MetadataTableTemplateCreateRequest, MetadataTableTemplateQueryParams, MetadataTableTemplateQueryResponse, MetadataTableTemplateUpdateRequest, MetadataTableUpdateRequest, MetadataValidationConfig, MetadataValidationRequest, MetadataValueEditConfig, ModificationParameters, MondoDisease, NCBITaxonomy, OntologyCustomFilter, OntologySuggestion, OntologySuggestionResponse, OntologyTypeConfig, PSIMSOntology, PaginatedResponse, PooledSample, SampleCountConfirmationError, SampleCountValidationRequest, SampleCountValidationResponse, SampleCountValidationResult, SamplePool, SamplePoolCreateRequest, SamplePoolQueryParams, SamplePoolUpdateRequest, Schema, SchemaQueryParams, SchemaSelectionResult, SdrfColumnConfig, Species, SpikedCompound, SubcellularLocation, SyntaxType, SyntheticPeptide, TableCreationData, TaskListItem, TaskResult, TaskStatus, TaskType, TemplateSchemaSelectionResult, Tissue, UberonAnatomy, Unimod, UnimodFullData, UnimodSpecification, ValidationResult, ValidationResults };
+export type { AgeFormat, ApiResponse, AsyncTaskCreateResponse, AsyncTaskQueryParams, AsyncTaskStatus, BaseTimestampedModel, BulkExcelExportRequest, BulkExportRequest, CellOntology, ChEBICompound, ChunkedFileImportRequest, ChunkedImportProgress, ChunkedImportRequest, ChunkedUploadCompletionRequest, ChunkedUploadCompletionResponse, ChunkedUploadRequest, ChunkedUploadResponse, ChunkedUploadStatus, CleavageAgentDetails, ColumnTypeConfig, DownloadUrlResponse, ElectronAPI, ExcelExportOptions, FavouriteMetadataOption, FavouriteMetadataOptionCreateRequest, FavouriteMetadataOptionQueryParams, FavouriteMetadataOptionUpdateRequest, HumanDisease, MSUniqueVocabularies, MetadataColumn, MetadataColumnCreateRequest, MetadataColumnModifier, MetadataColumnQueryParams, MetadataColumnTemplate, MetadataColumnTemplateCreateRequest, MetadataColumnTemplateQueryParams, MetadataColumnTemplateShare, MetadataColumnTemplateShareCreateRequest, MetadataColumnTemplateShareQueryParams, MetadataColumnTemplateUpdateRequest, MetadataColumnUpdateRequest, MetadataExportRequest, MetadataImportRequest, MetadataQueryParams, MetadataTable, MetadataTableCreateRequest, MetadataTableQueryParams, MetadataTableQueryResponse, MetadataTableTemplate, MetadataTableTemplateCreateRequest, MetadataTableTemplateQueryParams, MetadataTableTemplateQueryResponse, MetadataTableTemplateUpdateRequest, MetadataTableUpdateRequest, MetadataValidationConfig, MetadataValidationRequest, MetadataValueEditConfig, ModificationParameters, MondoDisease, NCBITaxonomy, OntologyCustomFilter, OntologySuggestParams, OntologySuggestResponse, OntologySuggestion, OntologyTypeConfig, PSIMSOntology, PaginatedResponse, PooledSample, SampleCountConfirmationError, SampleCountValidationRequest, SampleCountValidationResponse, SampleCountValidationResult, SamplePool, SamplePoolCreateRequest, SamplePoolQueryParams, SamplePoolUpdateRequest, Schema, SchemaQueryParams, SchemaSelectionResult, SdrfColumnConfig, Species, SpikedCompound, SubcellularLocation, SyntaxType, SyntheticPeptide, TableCreationData, TaskListItem, TaskResult, TaskStatus, TaskType, TemplateSchemaSelectionResult, Tissue, UberonAnatomy, Unimod, UnimodFullData, UnimodSpecification, ValidationResult, ValidationResults };

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@noatgnu/cupcake-vanilla",
-  "version": "1.2.8",
+  "version": "1.2.9",
   "description": "An extension for cupcake-core that provides additional api and interfaces for facility to manage and compose metadata.",
   "author": "Toan Phung",
   "license": "MIT",