npm - @noatgnu/cupcake-vanilla - Versions diffs - 1.2.5 → 1.2.7 - Mend

@noatgnu/cupcake-vanilla 1.2.5 → 1.2.7

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package/fesm2022/noatgnu-cupcake-vanilla.mjs.map +1 -1
package/package.json +1 -1

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{"version":3,"file":"noatgnu-cupcake-vanilla.mjs","sources":["../../../projects/cupcake-vanilla/src/lib/models/enums.ts","../../../projects/cupcake-vanilla/src/lib/models/ontology-utils.ts","../../../projects/cupcake-vanilla/src/lib/models/ontology-config.ts","../../../projects/cupcake-vanilla/src/lib/models/sdrf-config.ts","../../../projects/cupcake-vanilla/src/lib/models/async-task.ts","../../../projects/cupcake-vanilla/src/lib/services/metadata-table.ts","../../../projects/cupcake-vanilla/src/lib/services/metadata-column.ts","../../../projects/cupcake-vanilla/src/lib/services/sample-pool.ts","../../../projects/cupcake-vanilla/src/lib/services/metadata-table-template.ts","../../../projects/cupcake-vanilla/src/lib/services/favourite-metadata-option.ts","../../../projects/cupcake-vanilla/src/lib/services/metadata-column-template.ts","../../../projects/cupcake-vanilla/src/lib/services/metadata-column-template-share.ts","../../../projects/cupcake-vanilla/src/lib/services/metadata-management.ts","../../../projects/cupcake-vanilla/src/lib/services/websocket.ts","../../../projects/cupcake-vanilla/src/lib/services/admin-websocket.ts","../../../projects/cupcake-vanilla/src/lib/services/notification.ts","../../../projects/cupcake-vanilla/src/lib/services/ontology-search.ts","../../../projects/cupcake-vanilla/src/lib/services/schema.ts","../../../projects/cupcake-vanilla/src/lib/services/sdrf-defaults.ts","../../../projects/cupcake-vanilla/src/lib/services/async-task.ts","../../../projects/cupcake-vanilla/src/lib/services/async-export.ts","../../../projects/cupcake-vanilla/src/lib/services/chunked-upload.ts","../../../projects/cupcake-vanilla/src/lib/services/async-import.ts","../../../projects/cupcake-vanilla/src/lib/services/async-validation.ts","../../../projects/cupcake-vanilla/src/lib/services/chunked-import.ts","../../../projects/cupcake-vanilla/src/lib/services/sdrf-syntax.ts","../../../projects/cupcake-vanilla/src/lib/services/electron.ts","../../../projects/cupcake-vanilla/src/lib/components/sdrf-age-input/sdrf-age-input.ts","../../../projects/cupcake-vanilla/src/lib/components/sdrf-age-input/sdrf-age-input.html","../../../projects/cupcake-vanilla/src/lib/components/sdrf-modification-input/sdrf-modification-input.ts","../../../projects/cupcake-vanilla/src/lib/components/sdrf-modification-input/sdrf-modification-input.html","../../../projects/cupcake-vanilla/src/lib/components/sdrf-spiked-compound-input/sdrf-spiked-compound-input.ts","../../../projects/cupcake-vanilla/src/lib/components/sdrf-spiked-compound-input/sdrf-spiked-compound-input.html","../../../projects/cupcake-vanilla/src/lib/components/sdrf-cleavage-input/sdrf-cleavage-input.ts","../../../projects/cupcake-vanilla/src/lib/components/sdrf-cleavage-input/sdrf-cleavage-input.html","../../../projects/cupcake-vanilla/src/lib/components/metadata-value-edit-modal/metadata-value-edit-modal.ts","../../../projects/cupcake-vanilla/src/lib/components/metadata-value-edit-modal/metadata-value-edit-modal.html","../../../projects/cupcake-vanilla/src/lib/components/excel-export-modal/excel-export-modal.ts","../../../projects/cupcake-vanilla/src/lib/components/excel-export-modal/excel-export-modal.html","../../../projects/cupcake-vanilla/src/lib/components/validation-results-modal/validation-results-modal.ts","../../../projects/cupcake-vanilla/src/lib/components/validation-results-modal/validation-results-modal.html","../../../projects/cupcake-vanilla/src/lib/components/async-task-ui.ts","../../../projects/cupcake-vanilla/src/lib/components/metadata-validation-modal/metadata-validation-modal.ts","../../../projects/cupcake-vanilla/src/lib/components/metadata-validation-modal/metadata-validation-modal.html","../../../projects/cupcake-vanilla/src/lib/components/metadata-table-edit-modal/metadata-table-edit-modal.ts","../../../projects/cupcake-vanilla/src/lib/components/metadata-table-edit-modal/metadata-table-edit-modal.html","../../../projects/cupcake-vanilla/src/lib/components/metadata-table-templates/column-edit-modal/column-edit-modal.ts","../../../projects/cupcake-vanilla/src/lib/components/metadata-table-templates/column-edit-modal/column-edit-modal.html","../../../projects/cupcake-vanilla/src/lib/components/metadata-table-templates/metadata-table-template-edit-modal/metadata-table-template-edit-modal.ts","../../../projects/cupcake-vanilla/src/lib/components/metadata-table-templates/metadata-table-template-edit-modal/metadata-table-template-edit-modal.html","../../../projects/cupcake-vanilla/src/lib/components/metadata-table-templates/schema-selection-modal/schema-selection-modal.ts","../../../projects/cupcake-vanilla/src/lib/components/metadata-table-templates/schema-selection-modal/schema-selection-modal.html","../../../projects/cupcake-vanilla/src/lib/components/schema-selection-modal/schema-selection-modal.ts","../../../projects/cupcake-vanilla/src/lib/components/schema-selection-modal/schema-selection-modal.html","../../../projects/cupcake-vanilla/src/lib/components/metadata-table-templates/table-creation-modal/table-creation-modal.ts","../../../projects/cupcake-vanilla/src/lib/components/metadata-table-templates/table-creation-modal/table-creation-modal.html","../../../projects/cupcake-vanilla/src/lib/components/metadata-table-templates/metadata-table-templates.ts","../../../projects/cupcake-vanilla/src/lib/components/metadata-table-templates/metadata-table-templates.html","../../../projects/cupcake-vanilla/src/lib/cupcake-vanilla.ts","../../../projects/cupcake-vanilla/src/public-api.ts","../../../projects/cupcake-vanilla/src/noatgnu-cupcake-vanilla.ts"],"sourcesContent":["export enum OntologyType {\r\n NONE = '',\r\n SPECIES = 'species',\r\n TISSUE = 'tissue',\r\n HUMAN_DISEASE = 'human_disease',\r\n SUBCELLULAR_LOCATION = 'subcellular_location',\r\n UNIMOD = 'unimod',\r\n NCBI_TAXONOMY = 'ncbi_taxonomy',\r\n MONDO = 'mondo',\r\n UBERON = 'uberon',\r\n CHEBI = 'chebi',\r\n CELL_ONTOLOGY = 'cell_ontology',\r\n MS_UNIQUE_VOCABULARIES = 'ms_unique_vocabularies',\r\n PSI_MS = 'psi_ms'\r\n}\r\n\r\nexport const OntologyTypeLabels: Record<OntologyType, string> = {\r\n [OntologyType.NONE]: 'None',\r\n [OntologyType.SPECIES]: 'Species',\r\n [OntologyType.TISSUE]: 'Tissue',\r\n [OntologyType.HUMAN_DISEASE]: 'Human Disease',\r\n [OntologyType.SUBCELLULAR_LOCATION]: 'Subcellular Location',\r\n [OntologyType.UNIMOD]: 'Unimod Modifications',\r\n [OntologyType.NCBI_TAXONOMY]: 'NCBI Taxonomy',\r\n [OntologyType.MONDO]: 'MONDO Disease',\r\n [OntologyType.UBERON]: 'UBERON Anatomy',\r\n [OntologyType.CHEBI]: 'ChEBI',\r\n [OntologyType.CELL_ONTOLOGY]: 'Cell Ontology',\r\n [OntologyType.MS_UNIQUE_VOCABULARIES]: 'MS Unique Vocabularies',\r\n [OntologyType.PSI_MS]: 'PSI-MS Controlled Vocabulary'\r\n};\r\n\r\nexport enum TemplatePermissionLevel {\r\n READ = 'read',\r\n WRITE = 'write',\r\n ADMIN = 'admin'\r\n}\r\n\r\nexport const TemplatePermissionLabels: Record<TemplatePermissionLevel, string> = {\r\n [TemplatePermissionLevel.READ]: 'Read Only',\r\n [TemplatePermissionLevel.WRITE]: 'Read & Write',\r\n [TemplatePermissionLevel.ADMIN]: 'Administrator'\r\n};\r\n\r\nexport enum ColumnType {\r\n CHARACTERISTICS = 'characteristics',\r\n COMMENT = 'comment',\r\n FACTOR_VALUE = 'factor_value',\r\n SOURCE_NAME = 'source_name',\r\n SPECIAL = 'special'\r\n}","export interface UnimodSpecification {\r\n accession: string;\r\n name: string;\r\n definition: string;\r\n additionalData: Array<{id: string; description: string}>;\r\n generalProperties: Record<string, string>;\r\n specifications: Record<string, UnimodSpecification>;\r\n deltaMonoMass: string;\r\n deltaAvgeMass: string;\r\n deltaComposition: string;\r\n [key: string]: any;\r\n}\r\n\r\nexport interface UnimodFullData {\r\n accession: string;\r\n name: string;\r\n definition: string;\r\n additionalData: Array<{id: string; description: string}>;\r\n generalProperties: Record<string, string>;\r\n specifications: Record<string, UnimodSpecification>;\r\n deltaMonoMass: string;\r\n deltaAvgeMass: string;\r\n deltaComposition: string;\r\n [key: string]: any;\r\n}\r\n\r\nimport { OntologyType } from './enums';\r\n\r\nexport function isUnimodFullData(suggestion: any): suggestion is { fullData: UnimodFullData } {\r\n return suggestion &&\r\n suggestion.ontologyType === OntologyType.UNIMOD &&\r\n !!suggestion.fullData;\r\n}\r\n\r\nexport class OntologyUtils {\r\n static getUnimodSpecifications(suggestion: any): (UnimodSpecification & { specNumber: string })[] {\r\n if (!isUnimodFullData(suggestion)) return [];\r\n \r\n return Object.entries(suggestion.fullData.specifications).map(([specNum, spec]) => ({\r\n ...spec,\r\n specNumber: specNum\r\n }));\r\n }\r\n\r\n static getActiveUnimodSpecifications(suggestion: any): (UnimodSpecification & { specNumber: string })[] {\r\n return this.getUnimodSpecifications(suggestion).filter(spec => !spec['hidden']);\r\n }\r\n\r\n static formatUnimodName(data: UnimodFullData): string {\r\n return `${data.name} (${data.accession})`;\r\n }\r\n}","import { OntologyType, ColumnType } from './enums';\r\n\r\nexport interface OntologyCustomFilter {\r\n [ontologyType: string]: {\r\n [filterKey: string]: string \| number \| boolean;\r\n };\r\n}\r\n\r\nexport interface OntologyTypeConfig {\r\n value: string;\r\n label: string;\r\n customFilters?: OntologyCustomFilter;\r\n}\r\n\r\nexport interface ColumnTypeConfig {\r\n value: string;\r\n label: string;\r\n}\r\n\r\n// MS Unique Vocabularies term types based on backend load_ms_term.py\r\nexport enum MSTermType {\r\n INSTRUMENT = 'instrument',\r\n CLEAVAGE_AGENT = 'cleavage agent',\r\n DISSOCIATION_METHOD = 'dissociation method',\r\n SAMPLE_ATTRIBUTE = 'sample attribute',\r\n CELL_LINE = 'cell line',\r\n ENRICHMENT_PROCESS = 'enrichment process',\r\n FRACTIONATION_METHOD = 'fractionation method',\r\n DATA_ACQUISITION_METHOD = 'proteomics data acquisition method',\r\n REDUCTION_REAGENT = 'reduction reagent',\r\n ALKYLATION_REAGENT = 'alkylation reagent',\r\n MASS_ANALYZER_TYPE = 'mass analyzer type',\r\n ANCESTRAL_CATEGORY = 'ancestral category',\r\n SEX = 'sex',\r\n DEVELOPMENTAL_STAGE = 'developmental stage'\r\n}\r\n\r\n\r\n// Predefined ontology type configurations matching backend load_column_templates.py\r\nexport const ONTOLOGY_TYPE_CONFIGS: OntologyTypeConfig[] = [\r\n { value: OntologyType.NONE, label: 'None', customFilters: undefined },\r\n\r\n // Basic ontology types without custom filters\r\n { value: OntologyType.SPECIES, label: 'Species (UniProt)', customFilters: undefined },\r\n { value: OntologyType.NCBI_TAXONOMY, label: 'NCBI Taxonomy', customFilters: undefined },\r\n { value: OntologyType.TISSUE, label: 'Tissue (UniProt)', customFilters: undefined },\r\n { value: OntologyType.HUMAN_DISEASE, label: 'Human Disease (UniProt)', customFilters: undefined },\r\n { value: OntologyType.MONDO, label: 'MONDO Disease', customFilters: undefined },\r\n { value: OntologyType.UNIMOD, label: 'Modification (Unimod)', customFilters: undefined },\r\n { value: OntologyType.UBERON, label: 'Uberon Anatomy', customFilters: undefined },\r\n { value: OntologyType.SUBCELLULAR_LOCATION, label: 'Subcellular Location (UniProt)', customFilters: undefined },\r\n { value: OntologyType.CHEBI, label: 'ChEbi', customFilters: undefined },\r\n { value: OntologyType.CELL_ONTOLOGY, label: 'Cell Ontology', customFilters: undefined },\r\n { value: OntologyType.PSI_MS, label: 'PSI-MS', customFilters: undefined },\r\n\r\n // MS Unique Vocabularies with specific term_type filters\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Sample Attribute (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.SAMPLE_ATTRIBUTE } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Instrument (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.INSTRUMENT } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'MS Analyzer Type (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.MASS_ANALYZER_TYPE } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Cleavage Agent (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.CLEAVAGE_AGENT } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Dissociation Method (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.DISSOCIATION_METHOD } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Cell Line (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.CELL_LINE } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Enrichment Process (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.ENRICHMENT_PROCESS } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Fractionation Method (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.FRACTIONATION_METHOD } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Data Acquisition Method (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.DATA_ACQUISITION_METHOD } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Reduction Reagent (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.REDUCTION_REAGENT } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Alkylation Reagent (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.ALKYLATION_REAGENT } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Ancestral Category (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.ANCESTRAL_CATEGORY } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Sex (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.SEX } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Developmental Stage (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.DEVELOPMENTAL_STAGE } }\r\n }\r\n];\r\n\r\nexport const COLUMN_TYPE_CONFIGS: ColumnTypeConfig[] = [\r\n { value: ColumnType.CHARACTERISTICS, label: 'Characteristics' },\r\n { value: ColumnType.COMMENT, label: 'Comment' },\r\n { value: ColumnType.FACTOR_VALUE, label: 'Factor Value' },\r\n { value: ColumnType.SOURCE_NAME, label: 'Source Name' },\r\n { value: ColumnType.SPECIAL, label: 'Special' }\r\n];","import { ColumnType } from './enums';\r\n\r\nexport interface SdrfColumnConfig {\r\n name: string;\r\n type: string;\r\n description: string;\r\n category?: SdrfColumnCategory;\r\n isRequired?: boolean;\r\n}\r\n\r\nexport enum SdrfColumnCategory {\r\n CORE_SAMPLE = 'Core Sample Metadata',\r\n CHARACTERISTICS = 'Characteristics',\r\n ASSAY = 'Assay Information',\r\n COMMENTS = 'Comments',\r\n MODIFICATIONS = 'Modifications & Enzymes',\r\n MASS_TOLERANCES = 'Mass Tolerances',\r\n TECHNICAL_PARAMS = 'Technical Parameters',\r\n SAMPLE_PREP = 'Sample Preparation',\r\n FILE_PROJECT = 'File & Project Information'\r\n}\r\n\r\n// Official SDRF-Proteomics column configurations based on specification\r\nexport const OFFICIAL_SDRF_COLUMNS: SdrfColumnConfig[] = [\r\n // Core sample metadata\r\n {\r\n name: 'source name',\r\n type: ColumnType.SOURCE_NAME,\r\n description: 'Unique sample identifier',\r\n category: SdrfColumnCategory.CORE_SAMPLE,\r\n isRequired: true\r\n },\r\n\r\n // Required characteristics\r\n {\r\n name: 'characteristics[organism]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Organism of the sample',\r\n category: SdrfColumnCategory.CHARACTERISTICS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'characteristics[disease]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Disease under study',\r\n category: SdrfColumnCategory.CHARACTERISTICS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'characteristics[organism part]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Part of organism anatomy',\r\n category: SdrfColumnCategory.CHARACTERISTICS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'characteristics[cell type]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Cell type',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n\r\n // Additional characteristics\r\n {\r\n name: 'characteristics[age]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Age of the individual',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[enrichment process]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Enrichment process applied',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[pooled sample]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Pooled sample indicator',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[spiked compound]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Spiked compound details',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[synthetic peptide]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Synthetic peptide indicator',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[xenograft]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Xenograft description',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[source name]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Reference to source sample',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[individual]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Patient identifier',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[mass]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Sample mass',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[biological replicate]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Biological replicate number',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[phenotype]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Sample phenotype',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[compound]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Compound applied',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n\r\n // Assay information\r\n {\r\n name: 'assay name',\r\n type: ColumnType.SPECIAL,\r\n description: 'MS run identifier',\r\n category: SdrfColumnCategory.ASSAY,\r\n isRequired: true\r\n },\r\n {\r\n name: 'technology type',\r\n type: ColumnType.SPECIAL,\r\n description: 'Technology used for data generation',\r\n category: SdrfColumnCategory.ASSAY,\r\n isRequired: true\r\n },\r\n\r\n // Required comment fields\r\n {\r\n name: 'comment[fraction identifier]',\r\n type: ColumnType.COMMENT,\r\n description: 'Fraction number',\r\n category: SdrfColumnCategory.COMMENTS\r\n },\r\n {\r\n name: 'comment[label]',\r\n type: ColumnType.COMMENT,\r\n description: 'Label applied to sample',\r\n category: SdrfColumnCategory.COMMENTS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'comment[data file]',\r\n type: ColumnType.COMMENT,\r\n description: 'Raw data file name',\r\n category: SdrfColumnCategory.COMMENTS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'comment[instrument]',\r\n type: ColumnType.COMMENT,\r\n description: 'Mass spectrometer model',\r\n category: SdrfColumnCategory.COMMENTS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'comment[technical replicate]',\r\n type: ColumnType.COMMENT,\r\n description: 'Technical replicate number',\r\n category: SdrfColumnCategory.COMMENTS\r\n },\r\n\r\n // Modification and enzyme information\r\n {\r\n name: 'comment[modification parameters]',\r\n type: ColumnType.COMMENT,\r\n description: 'Protein modifications',\r\n category: SdrfColumnCategory.MODIFICATIONS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'comment[cleavage agent details]',\r\n type: ColumnType.COMMENT,\r\n description: 'Digestion enzyme information',\r\n category: SdrfColumnCategory.MODIFICATIONS,\r\n isRequired: true\r\n },\r\n\r\n // Mass tolerances\r\n {\r\n name: 'comment[fragment mass tolerance]',\r\n type: ColumnType.COMMENT,\r\n description: 'Fragment ion mass tolerance',\r\n category: SdrfColumnCategory.MASS_TOLERANCES\r\n },\r\n {\r\n name: 'comment[precursor mass tolerance]',\r\n type: ColumnType.COMMENT,\r\n description: 'Precursor ion mass tolerance',\r\n category: SdrfColumnCategory.MASS_TOLERANCES\r\n },\r\n\r\n // Additional technical parameters\r\n {\r\n name: 'comment[MS2 analyzer type]',\r\n type: ColumnType.COMMENT,\r\n description: 'MS2 analyzer type',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n {\r\n name: 'comment[collision energy]',\r\n type: ColumnType.COMMENT,\r\n description: 'Collision energy used',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n {\r\n name: 'comment[dissociation method]',\r\n type: ColumnType.COMMENT,\r\n description: 'Fragmentation method',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n {\r\n name: 'comment[proteomics data acquisition method]',\r\n type: ColumnType.COMMENT,\r\n description: 'DDA, DIA, etc.',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n {\r\n name: 'comment[MS1 scan range]',\r\n type: ColumnType.COMMENT,\r\n description: 'MS1 scan range for DIA',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n {\r\n name: 'comment[scan window lower limit]',\r\n type: ColumnType.COMMENT,\r\n description: 'Scan window lower limit',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n {\r\n name: 'comment[scan window upper limit]',\r\n type: ColumnType.COMMENT,\r\n description: 'Scan window upper limit',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n\r\n // Sample preparation\r\n {\r\n name: 'comment[depletion]',\r\n type: ColumnType.COMMENT,\r\n description: 'Depletion method applied',\r\n category: SdrfColumnCategory.SAMPLE_PREP\r\n },\r\n {\r\n name: 'comment[reduction reagent]',\r\n type: ColumnType.COMMENT,\r\n description: 'Reduction reagent used',\r\n category: SdrfColumnCategory.SAMPLE_PREP\r\n },\r\n {\r\n name: 'comment[alkylation reagent]',\r\n type: ColumnType.COMMENT,\r\n description: 'Alkylation reagent used',\r\n category: SdrfColumnCategory.SAMPLE_PREP\r\n },\r\n {\r\n name: 'comment[fractionation method]',\r\n type: ColumnType.COMMENT,\r\n description: 'Fractionation method',\r\n category: SdrfColumnCategory.SAMPLE_PREP\r\n },\r\n\r\n // File and project information\r\n {\r\n name: 'comment[file uri]',\r\n type: ColumnType.COMMENT,\r\n description: 'Public URI of the file',\r\n category: SdrfColumnCategory.FILE_PROJECT\r\n },\r\n {\r\n name: 'comment[proteomexchange accession number]',\r\n type: ColumnType.COMMENT,\r\n description: 'ProteomeXchange accession',\r\n category: SdrfColumnCategory.FILE_PROJECT\r\n }\r\n];\r\n\r\n// Helper functions\r\nexport function getSdrfColumnsByCategory(category?: SdrfColumnCategory): SdrfColumnConfig[] {\r\n if (!category) {\r\n return OFFICIAL_SDRF_COLUMNS;\r\n }\r\n return OFFICIAL_SDRF_COLUMNS.filter(col => col.category === category);\r\n}\r\n\r\nexport function getRequiredSdrfColumns(): SdrfColumnConfig[] {\r\n return OFFICIAL_SDRF_COLUMNS.filter(col => col.isRequired === true);\r\n}\r\n\r\nexport function getSdrfColumnByName(name: string): SdrfColumnConfig \| undefined {\r\n return OFFICIAL_SDRF_COLUMNS.find(col => col.name.toLowerCase() === name.toLowerCase());\r\n}\r\n\r\nexport function isSdrfColumnRequired(name: string): boolean {\r\n const column = getSdrfColumnByName(name);\r\n return column?.isRequired === true;\r\n}","// Task status and type definitions\r\nexport type TaskStatus = 'QUEUED' \| 'STARTED' \| 'SUCCESS' \| 'FAILURE' \| 'CANCELLED';\r\n\r\nexport type TaskType =\r\n \| 'EXPORT_EXCEL'\r\n \| 'EXPORT_SDRF'\r\n \| 'IMPORT_SDRF'\r\n \| 'IMPORT_EXCEL'\r\n \| 'EXPORT_MULTIPLE_SDRF'\r\n \| 'EXPORT_MULTIPLE_EXCEL'\r\n \| 'VALIDATE_TABLE'\r\n \| 'REORDER_TABLE_COLUMNS'\r\n \| 'REORDER_TEMPLATE_COLUMNS';\r\n\r\nexport interface AsyncTaskStatus {\r\n id: string;\r\n taskType: TaskType;\r\n status: TaskStatus;\r\n user: number;\r\n userUsername?: string;\r\n metadataTable?: number;\r\n metadataTableName?: string;\r\n taskTypeDisplay?: string;\r\n statusDisplay?: string;\r\n parameters?: any;\r\n result?: any;\r\n errorMessage?: string;\r\n traceback?: string;\r\n createdAt: string;\r\n startedAt?: string;\r\n completedAt?: string;\r\n rqJobId?: string;\r\n queueName?: string;\r\n progressCurrent?: number;\r\n progressTotal?: number;\r\n progressDescription?: string;\r\n duration?: number;\r\n progressPercentage?: number;\r\n}\r\n\r\nexport interface TaskListItem {\r\n id: string;\r\n taskType: TaskType;\r\n taskTypeDisplay: string;\r\n status: TaskStatus;\r\n statusDisplay: string;\r\n user: number;\r\n userUsername: string;\r\n metadataTable: number \| null;\r\n metadataTableName: string \| null;\r\n progressPercentage: number;\r\n progressDescription: string;\r\n createdAt: string;\r\n startedAt: string \| null;\r\n completedAt: string \| null;\r\n duration: number \| null;\r\n errorMessage: string \| null;\r\n}\r\n\r\nexport interface TaskResult {\r\n id: number;\r\n task: string;\r\n file?: string;\r\n fileName?: string;\r\n contentType?: string;\r\n fileSize?: number;\r\n expiresAt: string;\r\n downloadCount?: number;\r\n lastDownloadedAt?: string;\r\n createdAt: string;\r\n}\r\n\r\n// Async Task Request/Response Interfaces\r\nexport interface MetadataExportRequest {\r\n metadataTableId: number;\r\n includePools?: boolean;\r\n metadataColumnIds?: number[];\r\n sampleNumber?: number;\r\n exportFormat?: string;\r\n labGroupIds?: number[];\r\n}\r\n\r\nexport interface BulkExportRequest {\r\n metadataTableIds: number[];\r\n includePools?: boolean;\r\n validateSdrf?: boolean;\r\n}\r\n\r\nexport interface BulkExcelExportRequest extends BulkExportRequest {\r\n metadataColumnIds?: number[];\r\n labGroupIds?: number[];\r\n}\r\n\r\nexport interface MetadataImportRequest {\r\n metadataTableId: number;\r\n file: File;\r\n replaceExisting?: boolean;\r\n validateOntologies?: boolean;\r\n}\r\n\r\nexport interface ChunkedImportRequest {\r\n metadataTableId: number;\r\n chunkedUploadId: string;\r\n replaceExisting?: boolean;\r\n validateOntologies?: boolean;\r\n createPools?: boolean;\r\n}\r\n\r\nexport interface MetadataValidationRequest {\r\n metadataTableId: number;\r\n validateSdrfFormat?: boolean;\r\n includePools?: boolean;\r\n}\r\n\r\nexport interface MetadataValidationConfig {\r\n metadataTableId: number;\r\n metadataTableName: string;\r\n}\r\n\r\nexport interface AsyncTaskCreateResponse {\r\n taskId: string;\r\n message: string;\r\n}\r\n\r\nexport interface DownloadUrlResponse {\r\n downloadUrl: string;\r\n filename: string;\r\n contentType: string;\r\n fileSize: number;\r\n expiresAt: string;\r\n expiresInHours: number;\r\n}\r\n\r\n// Query parameters for async tasks\r\nexport interface AsyncTaskQueryParams {\r\n taskType?: string;\r\n status?: string;\r\n metadataTable?: number;\r\n search?: string;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n// Helper constants\r\nexport const TASK_TYPE_LABELS: Record<TaskType, string> = {\r\n 'EXPORT_EXCEL': 'Export Excel Template',\r\n 'EXPORT_SDRF': 'Export SDRF File',\r\n 'IMPORT_SDRF': 'Import SDRF File',\r\n 'IMPORT_EXCEL': 'Import Excel File',\r\n 'EXPORT_MULTIPLE_SDRF': 'Export Multiple SDRF Files',\r\n 'EXPORT_MULTIPLE_EXCEL': 'Export Multiple Excel Templates',\r\n 'VALIDATE_TABLE': 'Validate Metadata Table',\r\n 'REORDER_TABLE_COLUMNS': 'Reorder Table Columns',\r\n 'REORDER_TEMPLATE_COLUMNS': 'Reorder Template Columns',\r\n};\r\n\r\nexport const TASK_STATUS_LABELS: Record<TaskStatus, string> = {\r\n 'QUEUED': 'Queued',\r\n 'STARTED': 'In Progress',\r\n 'SUCCESS': 'Completed',\r\n 'FAILURE': 'Failed',\r\n 'CANCELLED': 'Cancelled',\r\n};\r\n\r\nexport const TASK_STATUS_COLORS: Record<TaskStatus, string> = {\r\n 'QUEUED': 'secondary',\r\n 'STARTED': 'primary',\r\n 'SUCCESS': 'success',\r\n 'FAILURE': 'danger',\r\n 'CANCELLED': 'warning',\r\n};","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataTable,\r\n MetadataTableCreateRequest,\r\n MetadataTableUpdateRequest,\r\n MetadataTableQueryResponse,\r\n MetadataColumn,\r\n PaginatedResponse,\r\n SampleCountValidationRequest,\r\n SampleCountValidationResponse,\r\n SampleCountConfirmationError\r\n} from '../models';\r\n\r\nexport interface MetadataTableQueryParams {\r\n search?: string;\r\n ownerId?: number;\r\n labGroupId?: number;\r\n isPublished?: boolean;\r\n isLocked?: boolean;\r\n showShared?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class MetadataTableService extends BaseApiService {\r\n\r\n /*\r\n Get all metadata tables with optional filtering\r\n /\r\n getMetadataTables(params?: MetadataTableQueryParams): Observable<MetadataTableQueryResponse> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<MetadataTableQueryResponse>(`${this.apiUrl}/metadata-tables/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single metadata table by ID\r\n /\r\n getMetadataTable(id: number): Observable<MetadataTable> {\r\n return this.get<MetadataTable>(`${this.apiUrl}/metadata-tables/${id}/`);\r\n }\r\n\r\n /\r\n Create a new metadata table\r\n /\r\n createMetadataTable(table: MetadataTableCreateRequest): Observable<MetadataTable> {\r\n return this.post<MetadataTable>(`${this.apiUrl}/metadata-tables/`, table);\r\n }\r\n\r\n /\r\n Update an existing metadata table\r\n /\r\n updateMetadataTable(id: number, table: MetadataTableUpdateRequest): Observable<MetadataTable> {\r\n return this.put<MetadataTable>(`${this.apiUrl}/metadata-tables/${id}/`, table);\r\n }\r\n\r\n /\r\n Partially update a metadata table\r\n /\r\n patchMetadataTable(id: number, table: Partial<MetadataTableUpdateRequest>): Observable<MetadataTable> {\r\n return this.patch<MetadataTable>(`${this.apiUrl}/metadata-tables/${id}/`, table);\r\n }\r\n\r\n /\r\n Delete a metadata table\r\n /\r\n deleteMetadataTable(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/metadata-tables/${id}/`);\r\n }\r\n\r\n /\r\n Add a column to the metadata table\r\n /\r\n addColumn(id: number, columnData: any, position?: number): Observable<{ message: string; column: MetadataColumn }> {\r\n return this.post<{ message: string; column: MetadataColumn }>(`${this.apiUrl}/metadata-tables/${id}/add_column/`, {\r\n column_data: columnData,\r\n position\r\n });\r\n }\r\n\r\n /\r\n Add a column with automatic reordering\r\n /\r\n addColumnWithAutoReorder(id: number, request: { columnData: any }): Observable<{ message: string; column: MetadataColumn; reordered: boolean; schemaIdsUsed: number[] }> {\r\n return this.post<{ message: string; column: MetadataColumn; reordered: boolean; schemaIdsUsed: number[] }>(`${this.apiUrl}/metadata-tables/${id}/add_column_with_auto_reorder/`, request);\r\n }\r\n\r\n /\r\n Remove a column from the metadata table\r\n /\r\n removeColumn(id: number, columnId: number): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/metadata-tables/${id}/remove_column/`, {\r\n column_id: columnId\r\n });\r\n }\r\n\r\n /\r\n Reorder a column in the metadata table\r\n /\r\n reorderColumn(id: number, columnId: number, newPosition: number): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/metadata-tables/${id}/reorder_column/`, {\r\n column_id: columnId,\r\n new_position: newPosition\r\n });\r\n }\r\n\r\n /\r\n Normalize column positions\r\n /\r\n normalizeColumnPositions(id: number): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/metadata-tables/${id}/normalize_column_positions/`, {});\r\n }\r\n\r\n /\r\n Start async reordering of table columns by schema\r\n /\r\n reorderColumnsBySchemaAsync(id: number, schemaIds?: number[]): Observable<{\r\n taskId: string;\r\n message: string;\r\n metadataTableId: number;\r\n schemaIds: number[];\r\n }> {\r\n return this.post<{\r\n taskId: string;\r\n message: string;\r\n metadataTableId: number;\r\n schemaIds: number[];\r\n }>(`${this.apiUrl}/metadata-tables/${id}/reorder_columns_by_schema_async/`, {\r\n schemaIds: schemaIds \|\| []\r\n });\r\n }\r\n\r\n /\r\n Get all tables (admin only)\r\n /\r\n getAdminAllTables(): Observable<MetadataTable[]> {\r\n return this.get<MetadataTable[]>(`${this.apiUrl}/metadata-tables/admin_all_tables/`);\r\n }\r\n\r\n /\r\n Search metadata tables\r\n /\r\n searchMetadataTables(query: string): Observable<MetadataTableQueryResponse> {\r\n return this.getMetadataTables({ search: query });\r\n }\r\n\r\n /\r\n Get metadata tables by owner\r\n /\r\n getMetadataTablesByOwner(ownerId: number): Observable<MetadataTableQueryResponse> {\r\n return this.getMetadataTables({ ownerId: ownerId });\r\n }\r\n\r\n /\r\n Get shared metadata tables\r\n /\r\n getSharedMetadataTables(): Observable<MetadataTableQueryResponse> {\r\n return this.getMetadataTables({ showShared: true });\r\n }\r\n\r\n /\r\n Combine columns column-wise\r\n /\r\n combineColumnwise(request: { columnIds: number[] }): Observable<{ message: string; combinedColumn: any }> {\r\n return this.post<{ message: string; combinedColumn: any }>(`${this.apiUrl}/metadata-tables/combine_columnwise/`, request);\r\n }\r\n\r\n /\r\n Combine columns row-wise\r\n /\r\n combineRowwise(request: { columnIds: number[] }): Observable<{ message: string; combinedColumn: any }> {\r\n return this.post<{ message: string; combinedColumn: any }>(`${this.apiUrl}/metadata-tables/combine_rowwise/`, request);\r\n }\r\n\r\n validateSampleCountChange(id: number, request: SampleCountValidationRequest): Observable<SampleCountValidationResponse> {\r\n return this.post<SampleCountValidationResponse>(`${this.apiUrl}/metadata-tables/${id}/validate_sample_count_change/`, request);\r\n }\r\n\r\n updateSampleCount(id: number, newSampleCount: number, confirmed: boolean = false): Observable<{ message: string; oldSampleCount: number; newSampleCount: number; cleanupPerformed: boolean }> {\r\n return this.post<{ message: string; oldSampleCount: number; newSampleCount: number; cleanupPerformed: boolean }>(`${this.apiUrl}/metadata-tables/${id}/update_sample_count/`, {\r\n newSampleCount,\r\n confirmed\r\n });\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataColumn,\r\n MetadataColumnCreateRequest,\r\n MetadataColumnUpdateRequest,\r\n PaginatedResponse,\r\n OntologySuggestion\r\n} from '../models';\r\n\r\nexport interface MetadataColumnQueryParams {\r\n search?: string;\r\n metadataTableId?: number;\r\n type?: string;\r\n name?: string;\r\n hidden?: boolean;\r\n mandatory?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class MetadataColumnService extends BaseApiService {\r\n\r\n /\r\n Get all metadata columns with optional filtering\r\n /\r\n getMetadataColumns(params?: MetadataColumnQueryParams): Observable<PaginatedResponse<MetadataColumn>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<MetadataColumn>>(`${this.apiUrl}/metadata-columns/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single metadata column by ID\r\n /\r\n getMetadataColumn(id: number): Observable<MetadataColumn> {\r\n return this.get<MetadataColumn>(`${this.apiUrl}/metadata-columns/${id}/`);\r\n }\r\n\r\n /\r\n Create a new metadata column\r\n /\r\n createMetadataColumn(column: MetadataColumnCreateRequest): Observable<MetadataColumn> {\r\n return this.post<MetadataColumn>(`${this.apiUrl}/metadata-columns/`, column);\r\n }\r\n\r\n /\r\n Update an existing metadata column\r\n /\r\n updateMetadataColumn(id: number, column: MetadataColumnUpdateRequest): Observable<MetadataColumn> {\r\n return this.put<MetadataColumn>(`${this.apiUrl}/metadata-columns/${id}/`, column);\r\n }\r\n\r\n /\r\n Partially update a metadata column\r\n /\r\n patchMetadataColumn(id: number, column: Partial<MetadataColumnUpdateRequest>): Observable<MetadataColumn> {\r\n return this.patch<MetadataColumn>(`${this.apiUrl}/metadata-columns/${id}/`, column);\r\n }\r\n\r\n /\r\n Delete a metadata column\r\n /\r\n deleteMetadataColumn(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/metadata-columns/${id}/`);\r\n }\r\n\r\n /\r\n Bulk create metadata columns\r\n /\r\n bulkCreate(request: { columns: MetadataColumnCreateRequest[] }): Observable<MetadataColumn[]> {\r\n return this.post<MetadataColumn[]>(`${this.apiUrl}/metadata-columns/bulk_create/`, request);\r\n }\r\n\r\n /\r\n Validate SDRF data\r\n /\r\n validateSdrfData(request: { metadataIds: number[]; sampleNumber?: number }): Observable<{ valid: boolean; errors: any[]; sampleCount: number }> {\r\n return this.post<{ valid: boolean; errors: any[]; sampleCount: number }>(`${this.apiUrl}/metadata-columns/validate_sdrf_data/`, request);\r\n }\r\n\r\n /\r\n Get ontology suggestions for a column\r\n /\r\n getOntologySuggestions(params: { \r\n columnId: number; \r\n search?: string; \r\n limit?: number; \r\n searchType?: 'icontains' \| 'istartswith' \| 'exact';\r\n }): Observable<{\r\n ontologyType: string;\r\n suggestions: OntologySuggestion[];\r\n searchTerm: string;\r\n searchType: string;\r\n limit: number;\r\n count: number;\r\n customFilters: any;\r\n hasMore: boolean;\r\n }> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get(`${this.apiUrl}/metadata-columns/ontology_suggestions/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Validate value against column's ontology\r\n /\r\n validateValue(id: number, request: { value: string }): Observable<{ valid: boolean; value: string; ontologyType: string; suggestions?: any[] }> {\r\n return this.post(`${this.apiUrl}/metadata-columns/${id}/validate_value/`, request);\r\n }\r\n\r\n /\r\n Update column value with automatic modifier calculation\r\n /\r\n updateColumnValue(id: number, request: { \r\n value: string; \r\n sampleIndices?: number[]; \r\n valueType?: 'default' \| 'sample_specific' \| 'replace_all';\r\n }): Observable<{\r\n message: string;\r\n column: MetadataColumn;\r\n changes: any;\r\n valueType: string;\r\n }> {\r\n return this.post(`${this.apiUrl}/metadata-columns/${id}/update_column_value/`, request);\r\n }\r\n\r\n /\r\n Apply automatic ontology mapping to a column\r\n /\r\n applyOntologyMapping(id: number): Observable<{ applied: boolean; ontologyType: string; message: string }> {\r\n return this.post(`${this.apiUrl}/metadata-columns/${id}/apply_ontology_mapping/`, {});\r\n }\r\n\r\n /\r\n Detect ontology type for given column name and type\r\n /\r\n detectOntologyType(params: { name: string; type: string }): Observable<{ columnName: string; columnType: string; detectedOntologyType: string }> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get(`${this.apiUrl}/metadata-columns/detect_ontology_type/`, { params: httpParams });\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n SamplePool,\r\n SamplePoolCreateRequest,\r\n SamplePoolUpdateRequest,\r\n MetadataColumn,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\nexport interface SamplePoolQueryParams {\r\n search?: string;\r\n metadataTable?: number;\r\n isReference?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class SamplePoolService extends BaseApiService {\r\n\r\n /\r\n Get all sample pools with optional filtering\r\n /\r\n getSamplePools(params?: SamplePoolQueryParams): Observable<PaginatedResponse<SamplePool>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<SamplePool>>(`${this.apiUrl}/sample-pools/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single sample pool by ID\r\n /\r\n getSamplePool(id: number): Observable<SamplePool> {\r\n return this.get<SamplePool>(`${this.apiUrl}/sample-pools/${id}/`);\r\n }\r\n\r\n /\r\n Create a new sample pool\r\n /\r\n createSamplePool(pool: SamplePoolCreateRequest): Observable<SamplePool> {\r\n return this.post<SamplePool>(`${this.apiUrl}/sample-pools/`, pool);\r\n }\r\n\r\n /\r\n Update an existing sample pool\r\n /\r\n updateSamplePool(id: number, pool: SamplePoolUpdateRequest): Observable<SamplePool> {\r\n return this.put<SamplePool>(`${this.apiUrl}/sample-pools/${id}/`, pool);\r\n }\r\n\r\n /\r\n Partially update a sample pool\r\n /\r\n patchSamplePool(id: number, pool: Partial<SamplePoolUpdateRequest>): Observable<SamplePool> {\r\n return this.patch<SamplePool>(`${this.apiUrl}/sample-pools/${id}/`, pool);\r\n }\r\n\r\n /\r\n Delete a sample pool\r\n /\r\n deleteSamplePool(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/sample-pools/${id}/`);\r\n }\r\n\r\n /\r\n Get metadata columns associated with this pool\r\n /\r\n getMetadataColumns(id: number): Observable<MetadataColumn[]> {\r\n return this.get<MetadataColumn[]>(`${this.apiUrl}/sample-pools/${id}/metadata_columns/`);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataTableTemplate,\r\n MetadataTableTemplateCreateRequest,\r\n MetadataTableTemplateUpdateRequest,\r\n MetadataTableTemplateQueryResponse,\r\n MetadataTable,\r\n MetadataColumn,\r\n Schema,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\nexport interface MetadataTableTemplateQueryParams {\r\n search?: string;\r\n ownerId?: number;\r\n labGroupId?: number;\r\n visibility?: string;\r\n isDefault?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class MetadataTableTemplateService extends BaseApiService {\r\n\r\n /\r\n Get all metadata table templates with optional filtering\r\n /\r\n getMetadataTableTemplates(params?: MetadataTableTemplateQueryParams): Observable<MetadataTableTemplateQueryResponse> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<MetadataTableTemplateQueryResponse>(`${this.apiUrl}/metadata-table-templates/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single metadata table template by ID\r\n /\r\n getMetadataTableTemplate(id: number): Observable<MetadataTableTemplate> {\r\n return this.get<MetadataTableTemplate>(`${this.apiUrl}/metadata-table-templates/${id}/`);\r\n }\r\n\r\n /\r\n Create a new metadata table template\r\n /\r\n createMetadataTableTemplate(template: MetadataTableTemplateCreateRequest): Observable<MetadataTableTemplate> {\r\n return this.post<MetadataTableTemplate>(`${this.apiUrl}/metadata-table-templates/`, template);\r\n }\r\n\r\n /\r\n Update an existing metadata table template\r\n /\r\n updateMetadataTableTemplate(id: number, template: MetadataTableTemplateUpdateRequest): Observable<MetadataTableTemplate> {\r\n return this.put<MetadataTableTemplate>(`${this.apiUrl}/metadata-table-templates/${id}/`, template);\r\n }\r\n\r\n /\r\n Partially update a metadata table template\r\n /\r\n patchMetadataTableTemplate(id: number, template: Partial<MetadataTableTemplateUpdateRequest>): Observable<MetadataTableTemplate> {\r\n return this.patch<MetadataTableTemplate>(`${this.apiUrl}/metadata-table-templates/${id}/`, template);\r\n }\r\n\r\n /\r\n Delete a metadata table template\r\n /\r\n deleteMetadataTableTemplate(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/metadata-table-templates/${id}/`);\r\n }\r\n\r\n /\r\n Add a column to the template\r\n /\r\n addColumn(id: number, request: { column_data: any; position?: number }): Observable<{ message: string; column: MetadataColumn }> {\r\n return this.post<{ message: string; column: MetadataColumn }>(`${this.apiUrl}/metadata-table-templates/${id}/add_column/`, request);\r\n }\r\n\r\n /\r\n Remove a column from the template\r\n /\r\n removeColumn(id: number, request: { column_id: number }): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/metadata-table-templates/${id}/remove_column/`, request);\r\n }\r\n\r\n /\r\n Reorder a column within the template\r\n /\r\n reorderColumn(id: number, request: { column_id: number; new_position: number }): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/metadata-table-templates/${id}/reorder_column/`, request);\r\n }\r\n\r\n /\r\n Add a column with automatic reordering\r\n /\r\n addColumnWithAutoReorder(id: number, request: { columnData: any }): Observable<{ message: string; column: MetadataColumn; reordered: boolean; schemaIdsUsed: number[] }> {\r\n return this.post<{ message: string; column: MetadataColumn; reordered: boolean; schemaIdsUsed: number[] }>(`${this.apiUrl}/metadata-table-templates/${id}/add_column_with_auto_reorder/`, request);\r\n }\r\n\r\n /\r\n Duplicate a column within the template\r\n /\r\n duplicateColumn(id: number, request: { column_id: number }): Observable<{ message: string; duplicated_column: MetadataColumn }> {\r\n return this.post<{ message: string; duplicated_column: MetadataColumn }>(`${this.apiUrl}/metadata-table-templates/${id}/duplicate_column/`, request);\r\n }\r\n\r\n /\r\n Normalize column positions\r\n /\r\n normalizeColumnPositions(id: number): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/metadata-table-templates/${id}/normalize_column_positions/`, {});\r\n }\r\n\r\n /\r\n Start async reordering of template columns by schema\r\n /\r\n reorderColumnsBySchemaAsync(id: number, schemaIds?: number[]): Observable<{\r\n taskId: string;\r\n message: string;\r\n templateId: number;\r\n schemaIds: number[];\r\n }> {\r\n return this.post<{\r\n taskId: string;\r\n message: string;\r\n templateId: number;\r\n schemaIds: number[];\r\n }>(`${this.apiUrl}/metadata-table-templates/${id}/reorder_columns_by_schema_async/`, {\r\n schemaIds: schemaIds \|\| []\r\n });\r\n }\r\n\r\n /\r\n Apply this template to a metadata table\r\n /\r\n applyToMetadataTable(id: number, request: { metadata_table_id: number }): Observable<{ message: string; applied_columns: MetadataColumn[] }> {\r\n return this.post<{ message: string; applied_columns: MetadataColumn[] }>(`${this.apiUrl}/metadata-table-templates/${id}/apply_to_metadata_table/`, request);\r\n }\r\n\r\n /\r\n Update field mask for template\r\n /\r\n updateFieldMask(id: number, request: { field_mask: any }): Observable<{ message: string; field_mask: any }> {\r\n return this.post<{ message: string; field_mask: any }>(`${this.apiUrl}/metadata-table-templates/${id}/update_field_mask/`, request);\r\n }\r\n\r\n /\r\n Get field mask for template\r\n /\r\n getFieldMask(id: number): Observable<{ field_mask: any }> {\r\n return this.get<{ field_mask: any }>(`${this.apiUrl}/metadata-table-templates/${id}/get_field_mask/`);\r\n }\r\n\r\n /\r\n Get columns with field masks\r\n /\r\n getColumnsWithFieldMasks(id: number): Observable<{ columns: any[] }> {\r\n return this.get<{ columns: any[] }>(`${this.apiUrl}/metadata-table-templates/${id}/get_columns_with_field_masks/`);\r\n }\r\n\r\n /\r\n Get available schemas for creating templates\r\n /\r\n getAvailableSchemas(): Observable<Schema[]> {\r\n return this.get<Schema[]>(`${this.apiUrl}/metadata-table-templates/available_schemas/`);\r\n }\r\n\r\n /\r\n Create a new template from schema definitions\r\n /\r\n createFromSchema(request: { schemaIds: number[]; name: string; description?: string }): Observable<{ message: string; template: MetadataTableTemplate }> {\r\n return this.post<{ message: string; template: MetadataTableTemplate }>(`${this.apiUrl}/metadata-table-templates/create_from_schema/`, request);\r\n }\r\n\r\n /\r\n Create a new metadata table from an existing template\r\n /\r\n createTableFromTemplate(request: { templateId: number; name: string; description?: string; sampleCount: number }): Observable<MetadataTable> {\r\n return this.post<MetadataTable>(`${this.apiUrl}/metadata-table-templates/create_table_from_template/`, request);\r\n }\r\n\r\n /\r\n Create a new metadata table directly from schema definitions\r\n /\r\n createTableFromSchemas(request: { schemaIds: number[]; name: string; description?: string; sampleCount: number }): Observable<MetadataTable> {\r\n return this.post<MetadataTable>(`${this.apiUrl}/metadata-table-templates/create_table_from_schemas/`, request);\r\n }\r\n}\r\n","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n FavouriteMetadataOption,\r\n FavouriteMetadataOptionCreateRequest,\r\n FavouriteMetadataOptionUpdateRequest,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\nexport interface FavouriteMetadataOptionQueryParams {\r\n search?: string;\r\n name?: string;\r\n type?: string;\r\n userId?: number;\r\n labGroupId?: number;\r\n isGlobal?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class FavouriteMetadataOptionService extends BaseApiService {\r\n\r\n /\r\n Get all favourite metadata options with optional filtering\r\n /\r\n getFavouriteMetadataOptions(params?: FavouriteMetadataOptionQueryParams): Observable<PaginatedResponse<FavouriteMetadataOption>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<FavouriteMetadataOption>>(`${this.apiUrl}/favourite-options/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single favourite metadata option by ID\r\n /\r\n getFavouriteMetadataOption(id: number): Observable<FavouriteMetadataOption> {\r\n return this.get<FavouriteMetadataOption>(`${this.apiUrl}/favourite-options/${id}/`);\r\n }\r\n\r\n /\r\n Create a new favourite metadata option\r\n /\r\n createFavouriteMetadataOption(option: FavouriteMetadataOptionCreateRequest): Observable<FavouriteMetadataOption> {\r\n return this.post<FavouriteMetadataOption>(`${this.apiUrl}/favourite-options/`, option);\r\n }\r\n\r\n /\r\n Update an existing favourite metadata option\r\n /\r\n updateFavouriteMetadataOption(id: number, option: FavouriteMetadataOptionUpdateRequest): Observable<FavouriteMetadataOption> {\r\n return this.put<FavouriteMetadataOption>(`${this.apiUrl}/favourite-options/${id}/`, option);\r\n }\r\n\r\n /\r\n Partially update a favourite metadata option\r\n /\r\n patchFavouriteMetadataOption(id: number, option: Partial<FavouriteMetadataOptionUpdateRequest>): Observable<FavouriteMetadataOption> {\r\n return this.patch<FavouriteMetadataOption>(`${this.apiUrl}/favourite-options/${id}/`, option);\r\n }\r\n\r\n /\r\n Delete a favourite metadata option\r\n /\r\n deleteFavouriteMetadataOption(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/favourite-options/${id}/`);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataColumnTemplate,\r\n MetadataColumnTemplateCreateRequest,\r\n MetadataColumnTemplateUpdateRequest,\r\n MetadataColumn,\r\n OntologySuggestion,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\nexport interface MetadataColumnTemplateQueryParams {\r\n search?: string;\r\n type?: string;\r\n ontologyType?: string;\r\n isRequired?: boolean;\r\n isPublic?: boolean;\r\n ownerId?: number;\r\n labGroupId?: number;\r\n visibility?: string;\r\n isActive?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class MetadataColumnTemplateService extends BaseApiService {\r\n\r\n /\r\n Get all metadata column templates with optional filtering\r\n /\r\n getMetadataColumnTemplates(params?: MetadataColumnTemplateQueryParams): Observable<PaginatedResponse<MetadataColumnTemplate>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<MetadataColumnTemplate>>(`${this.apiUrl}/column-templates/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single metadata column template by ID\r\n /\r\n getMetadataColumnTemplate(id: number): Observable<MetadataColumnTemplate> {\r\n return this.get<MetadataColumnTemplate>(`${this.apiUrl}/column-templates/${id}/`);\r\n }\r\n\r\n /\r\n Create a new metadata column template\r\n /\r\n createMetadataColumnTemplate(template: MetadataColumnTemplateCreateRequest): Observable<MetadataColumnTemplate> {\r\n return this.post<MetadataColumnTemplate>(`${this.apiUrl}/column-templates/`, template);\r\n }\r\n\r\n /\r\n Update an existing metadata column template\r\n /\r\n updateMetadataColumnTemplate(id: number, template: MetadataColumnTemplateUpdateRequest): Observable<MetadataColumnTemplate> {\r\n return this.put<MetadataColumnTemplate>(`${this.apiUrl}/column-templates/${id}/`, template);\r\n }\r\n\r\n /\r\n Partially update a metadata column template\r\n /\r\n patchMetadataColumnTemplate(id: number, template: Partial<MetadataColumnTemplateUpdateRequest>): Observable<MetadataColumnTemplate> {\r\n return this.patch<MetadataColumnTemplate>(`${this.apiUrl}/column-templates/${id}/`, template);\r\n }\r\n\r\n /\r\n Delete a metadata column template\r\n /\r\n deleteMetadataColumnTemplate(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/column-templates/${id}/`);\r\n }\r\n\r\n /\r\n Create a MetadataColumn from this template\r\n /\r\n createMetadataColumn(id: number, request: { metadataTableId: number; columnPosition?: number }): Observable<{ message: string; column: MetadataColumn }> {\r\n return this.post<{ message: string; column: MetadataColumn }>(`${this.apiUrl}/column-templates/${id}/create_metadata_column/`, request);\r\n }\r\n\r\n /\r\n Share this template with another user\r\n /\r\n shareTemplate(id: number, request: { userId: number; canEdit?: boolean }): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/column-templates/${id}/share_template/`, request);\r\n }\r\n\r\n /\r\n Remove template sharing for a user\r\n /\r\n unshareTemplate(id: number, request: { userId: number }): Observable<{ message: string }> {\r\n return this.delete<{ message: string }>(`${this.apiUrl}/column-templates/${id}/unshare_template/`, { body: request });\r\n }\r\n\r\n /\r\n Get templates created by the current user\r\n /\r\n getMyTemplates(): Observable<MetadataColumnTemplate[]> {\r\n return this.get<MetadataColumnTemplate[]>(`${this.apiUrl}/column-templates/my_templates/`);\r\n }\r\n\r\n /\r\n Get most popular public templates\r\n /\r\n getPopularTemplates(): Observable<MetadataColumnTemplate[]> {\r\n return this.get<MetadataColumnTemplate[]>(`${this.apiUrl}/column-templates/popular_templates/`);\r\n }\r\n\r\n /\r\n Get ontology suggestions for this column template\r\n /\r\n getOntologySuggestions(params?: { \r\n search?: string; \r\n templateId?: number;\r\n limit?: number;\r\n searchType?: 'icontains' \| 'istartswith' \| 'exact';\r\n }): Observable<{\r\n ontologyType: string;\r\n suggestions: OntologySuggestion[];\r\n searchTerm: string;\r\n searchType: string;\r\n limit: number;\r\n count: number;\r\n customFilters: any;\r\n hasMore: boolean;\r\n }> {\r\n const httpParams = this.buildHttpParams({\r\n template_id: params?.templateId,\r\n search: params?.search,\r\n limit: params?.limit,\r\n search_type: params?.searchType\r\n });\r\n return this.get<{\r\n ontologyType: string;\r\n suggestions: OntologySuggestion[];\r\n searchTerm: string;\r\n searchType: string;\r\n limit: number;\r\n count: number;\r\n customFilters: any;\r\n hasMore: boolean;\r\n }>(`${this.apiUrl}/column-templates/ontology_suggestions/`, { params: httpParams });\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataColumnTemplateShare,\r\n MetadataColumnTemplateShareCreateRequest,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\nexport interface MetadataColumnTemplateShareQueryParams {\r\n template?: number;\r\n sharedWith?: number;\r\n sharedBy?: number;\r\n canEdit?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class MetadataColumnTemplateShareService extends BaseApiService {\r\n\r\n /\r\n Get all template shares with optional filtering\r\n /\r\n getMetadataColumnTemplateShares(params?: MetadataColumnTemplateShareQueryParams): Observable<PaginatedResponse<MetadataColumnTemplateShare>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<MetadataColumnTemplateShare>>(`${this.apiUrl}/template-shares/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single template share by ID\r\n /\r\n getMetadataColumnTemplateShare(id: number): Observable<MetadataColumnTemplateShare> {\r\n return this.get<MetadataColumnTemplateShare>(`${this.apiUrl}/template-shares/${id}/`);\r\n }\r\n\r\n /\r\n Create a new template share\r\n /\r\n createMetadataColumnTemplateShare(share: MetadataColumnTemplateShareCreateRequest): Observable<MetadataColumnTemplateShare> {\r\n return this.post<MetadataColumnTemplateShare>(`${this.apiUrl}/template-shares/`, share);\r\n }\r\n\r\n /\r\n Update an existing template share\r\n /\r\n updateMetadataColumnTemplateShare(id: number, share: { canEdit?: boolean }): Observable<MetadataColumnTemplateShare> {\r\n return this.put<MetadataColumnTemplateShare>(`${this.apiUrl}/template-shares/${id}/`, share);\r\n }\r\n\r\n /\r\n Delete a template share\r\n /\r\n deleteMetadataColumnTemplateShare(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/template-shares/${id}/`);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class MetadataManagementService extends BaseApiService {\r\n\r\n /\r\n Export metadata as Excel template (matching original CUPCAKE)\r\n /\r\n exportExcelTemplate(request: any): Observable<Blob> {\r\n return this.post(`${this.apiUrl}/metadata-management/export_excel_template/`, request, { responseType: 'blob' });\r\n }\r\n\r\n /\r\n Import metadata from SDRF file with intelligent column matching and schema organization\r\n /\r\n importSdrfFile(file: File, additionalData?: any): Observable<any> {\r\n const formData = new FormData();\r\n formData.append('file', file);\r\n if (additionalData) {\r\n Object.keys(additionalData).forEach(key => {\r\n formData.append(key, additionalData[key]);\r\n });\r\n }\r\n return this.post<any>(`${this.apiUrl}/metadata-management/import_sdrf_file/`, formData);\r\n }\r\n\r\n /\r\n Import metadata from Excel file (matching original CUPCAKE)\r\n /\r\n importExcelFile(file: File, additionalData?: any): Observable<any> {\r\n const formData = new FormData();\r\n formData.append('file', file);\r\n if (additionalData) {\r\n Object.keys(additionalData).forEach(key => {\r\n formData.append(key, additionalData[key]);\r\n });\r\n }\r\n return this.post<any>(`${this.apiUrl}/metadata-management/import_excel_file/`, formData);\r\n }\r\n\r\n /\r\n Collect metadata from metadata table\r\n /\r\n collectMetadata(params: any): Observable<any> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<any>(`${this.apiUrl}/metadata-management/collect_metadata/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Export metadata as SDRF file (matching original CUPCAKE)\r\n /\r\n exportSdrfFile(request: any): Observable<Blob> {\r\n return this.post(`${this.apiUrl}/metadata-management/export_sdrf_file/`, request, { responseType: 'blob' });\r\n }\r\n}","import { Injectable } from '@angular/core';\nimport { Observable } from 'rxjs';\nimport { WebSocketService as BaseWebSocketService, WebSocketMessage, AuthService, WEBSOCKET_ENDPOINT } from '@noatgnu/cupcake-core';\n\nexport type { WebSocketMessage };\n\n@Injectable({\n providedIn: 'root'\n})\nexport class Websocket extends BaseWebSocketService {\n\n constructor(authService: AuthService) {\n super(authService);\n this.endpoint = 'ccv/notifications';\n this.config.endpoint = 'ccv/notifications';\n this.config.url = this.getWebSocketUrl();\n }\n\n\n getMetadataTableUpdates(): Observable<WebSocketMessage> {\n return this.filterMessages('metadata_table.update');\n }\n\n getLabGroupUpdates(): Observable<WebSocketMessage> {\n return this.filterMessages('lab_group.update');\n }\n}\n","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { WebSocketService as BaseWebSocketService, WebSocketMessage, AuthService } from '@noatgnu/cupcake-core';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class AdminWebSocketService extends BaseWebSocketService {\r\n\r\n constructor(authService: AuthService) {\r\n super(authService);\r\n this.endpoint = 'ccv/admin';\r\n this.config.endpoint = 'ccv/admin';\r\n this.config.url = this.getWebSocketUrl();\r\n }\r\n\r\n getAdminNotifications(): Observable<WebSocketMessage> {\r\n return this.filterMessages('admin.notification');\r\n }\r\n\r\n override getSystemNotifications(): Observable<WebSocketMessage> {\r\n return this.filterMessages('system.notification');\r\n }\r\n}","import { Injectable, signal, computed, inject } from '@angular/core';\r\nimport { NotificationService as BaseNotificationService, NotificationItem, ToastService } from '@noatgnu/cupcake-core';\r\nimport { Websocket, WebSocketMessage } from './websocket';\r\nimport { AdminWebSocketService } from './admin-websocket';\r\n\r\nexport enum NotificationType {\r\n SYSTEM = 'system',\r\n METADATA_TABLE = 'metadata_table',\r\n LAB_GROUP = 'lab_group',\r\n FILE_UPLOAD = 'file_upload',\r\n DATA_PROCESSING = 'data_processing',\r\n ASYNC_TASK = 'async_task',\r\n USER = 'user'\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class NotificationService extends BaseNotificationService {\r\n private isConnected = signal(false);\r\n private isAdminConnected = signal(false);\r\n\r\n readonly isWebSocketConnected = computed(() => this.isConnected());\r\n readonly isAdminWebSocketConnected = computed(() => this.isAdminConnected());\r\n\r\n constructor(\r\n private websocketService: Websocket,\r\n private adminWebSocketService: AdminWebSocketService,\r\n toastService: ToastService\r\n ) {\r\n super(toastService);\r\n this.initializeWebSocket();\r\n }\r\n\r\n private initializeWebSocket(): void {\r\n this.websocketService.isConnected$.subscribe(connected => {\r\n this.isConnected.set(connected);\r\n if (connected) {\r\n console.log('CCV WebSocket connected - notifications active');\r\n }\r\n });\r\n\r\n this.adminWebSocketService.isConnected$.subscribe(connected => {\r\n this.isAdminConnected.set(connected);\r\n if (connected) {\r\n console.log('CCV Admin WebSocket connected - admin notifications active');\r\n }\r\n });\r\n\r\n this.websocketService.messages$.subscribe(message => {\r\n this.handleWebSocketMessage(message);\r\n });\r\n\r\n this.adminWebSocketService.messages$.subscribe(message => {\r\n this.handleAdminWebSocketMessage(message);\r\n });\r\n\r\n this.setupNotificationHandlers();\r\n }\r\n\r\n private setupNotificationHandlers(): void {\r\n this.websocketService.getSystemNotifications().subscribe(message => {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.SYSTEM);\r\n this.addNotification(notification);\r\n\r\n if (message['level'] === 'error') {\r\n this.toastService.error(message.message \|\| message['title']);\r\n } else if (message['level'] === 'warning') {\r\n this.toastService.warning(message.message \|\| message['title']);\r\n } else if (message['level'] === 'success') {\r\n this.toastService.success(message.message \|\| message['title']);\r\n } else {\r\n this.toastService.info(message.message \|\| message['title']);\r\n }\r\n });\r\n\r\n this.adminWebSocketService.getAdminNotifications().subscribe(message => {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.SYSTEM);\r\n this.addNotification(notification);\r\n\r\n const level = message['level'] \|\| 'info';\r\n const title = message['title'] \|\| 'Admin Notification';\r\n const messageText = message.message \|\| '';\r\n\r\n if (level === 'error') {\r\n this.toastService.error(`${title}: ${messageText}`, 10000);\r\n } else if (level === 'warning') {\r\n this.toastService.warning(`${title}: ${messageText}`, 8000);\r\n } else if (level === 'success') {\r\n this.toastService.success(`${title}: ${messageText}`, 6000);\r\n } else {\r\n this.toastService.info(`${title}: ${messageText}`, 5000);\r\n }\r\n });\r\n\r\n this.websocketService.getMetadataTableUpdates().subscribe(message => {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.METADATA_TABLE);\r\n this.addNotification(notification);\r\n });\r\n\r\n this.websocketService.getLabGroupUpdates().subscribe(message => {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.LAB_GROUP);\r\n this.addNotification(notification);\r\n });\r\n\r\n this.websocketService.filterMessages('async_task.update').subscribe(message => {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.ASYNC_TASK);\r\n this.addNotification(notification);\r\n });\r\n\r\n this.websocketService.filterMessages('notification_message').subscribe(message => {\r\n const notificationData = message['message'] \|\| message;\r\n\r\n let notificationType = 'info';\r\n let title = 'Notification';\r\n let messageText = '';\r\n\r\n if (typeof notificationData === 'object' && notificationData !== null) {\r\n notificationType = (notificationData as any)['type'] \|\| 'info';\r\n title = (notificationData as any)['title'] \|\| 'Notification';\r\n messageText = (notificationData as any)['message'] \|\| '';\r\n } else if (typeof notificationData === 'string') {\r\n messageText = notificationData;\r\n }\r\n\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.SYSTEM);\r\n this.addNotification(notification);\r\n\r\n if (notificationType === 'error') {\r\n this.toastService.error(`${title}: ${messageText}`, 8000);\r\n } else if (notificationType === 'warning') {\r\n this.toastService.warning(`${title}: ${messageText}`, 6000);\r\n } else if (notificationType === 'success') {\r\n this.toastService.success(`${title}: ${messageText}`, 5000);\r\n } else {\r\n this.toastService.info(`${title}: ${messageText}`, 4000);\r\n }\r\n });\r\n }\r\n\r\n private handleWebSocketMessage(message: WebSocketMessage): void {\r\n if (message.type === 'connection.established') {\r\n console.log('WebSocket connection established:', message);\r\n return;\r\n }\r\n\r\n if (message.type.includes('file.upload')) {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.FILE_UPLOAD);\r\n this.addNotification(notification);\r\n\r\n if (message.type === 'file.upload.completed') {\r\n this.toastService.success(`File upload completed: ${message['filename']}`);\r\n } else if (message.type === 'file.upload.failed') {\r\n this.toastService.error(`File upload failed: ${message['filename']}`);\r\n }\r\n } else if (message.type.includes('data.processing')) {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.DATA_PROCESSING);\r\n this.addNotification(notification);\r\n\r\n if (message.type === 'data.processing.completed') {\r\n this.toastService.success('Data processing completed');\r\n } else if (message.type === 'data.processing.failed') {\r\n this.toastService.error('Data processing failed');\r\n }\r\n }\r\n }\r\n\r\n private createNotificationFromWebSocket(message: WebSocketMessage, type: NotificationType): NotificationItem {\r\n const id = this.generateNotificationId();\r\n const timestamp = message.timestamp ? new Date(message.timestamp) : new Date();\r\n\r\n let title = '';\r\n let level: 'info' \| 'success' \| 'warning' \| 'error' = 'info';\r\n\r\n switch (type) {\r\n case NotificationType.SYSTEM:\r\n title = message['title'] \|\| 'System Notification';\r\n level = (message['level'] as any) \|\| 'info';\r\n break;\r\n case NotificationType.METADATA_TABLE:\r\n title = 'Metadata Table Update';\r\n level = message['action'] === 'deleted' ? 'warning' : 'info';\r\n break;\r\n case NotificationType.LAB_GROUP:\r\n title = 'Lab Group Update';\r\n level = 'info';\r\n break;\r\n case NotificationType.FILE_UPLOAD:\r\n title = 'File Upload';\r\n level = message.type.includes('failed') ? 'error' : 'success';\r\n break;\r\n case NotificationType.DATA_PROCESSING:\r\n title = 'Data Processing';\r\n level = message.type.includes('failed') ? 'error' : 'success';\r\n break;\r\n case NotificationType.ASYNC_TASK:\r\n title = this.getAsyncTaskTitle(message);\r\n level = this.getAsyncTaskLevel(message);\r\n break;\r\n default:\r\n title = 'Notification';\r\n }\r\n\r\n return {\r\n id,\r\n type,\r\n title,\r\n message: message.message \|\| '',\r\n timestamp,\r\n read: false,\r\n level,\r\n autoClose: level === 'success' \|\| level === 'info',\r\n data: message\r\n };\r\n }\r\n\r\n private getAsyncTaskTitle(message: WebSocketMessage): string {\r\n const taskType = message['task_type'];\r\n const status = message['status'];\r\n\r\n let operation = 'Task';\r\n switch (taskType) {\r\n case 'EXPORT_EXCEL':\r\n operation = 'Excel Export';\r\n break;\r\n case 'EXPORT_SDRF':\r\n operation = 'SDRF Export';\r\n break;\r\n case 'IMPORT_SDRF':\r\n operation = 'SDRF Import';\r\n break;\r\n case 'IMPORT_EXCEL':\r\n operation = 'Excel Import';\r\n break;\r\n case 'EXPORT_MULTIPLE_SDRF':\r\n operation = 'Bulk SDRF Export';\r\n break;\r\n case 'EXPORT_MULTIPLE_EXCEL':\r\n operation = 'Bulk Excel Export';\r\n break;\r\n case 'VALIDATE_TABLE':\r\n operation = 'Table Validation';\r\n break;\r\n case 'REORDER_TABLE_COLUMNS':\r\n operation = 'Column Reordering';\r\n break;\r\n case 'REORDER_TEMPLATE_COLUMNS':\r\n operation = 'Template Column Reordering';\r\n break;\r\n }\r\n\r\n switch (status) {\r\n case 'QUEUED':\r\n return `${operation} Queued`;\r\n case 'STARTED':\r\n return `${operation} In Progress`;\r\n case 'SUCCESS':\r\n return `${operation} Completed`;\r\n case 'FAILURE':\r\n return `${operation} Failed`;\r\n case 'CANCELLED':\r\n return `${operation} Cancelled`;\r\n default:\r\n return `${operation} Update`;\r\n }\r\n }\r\n\r\n private getAsyncTaskLevel(message: WebSocketMessage): 'info' \| 'success' \| 'warning' \| 'error' {\r\n const status = message['status'];\r\n\r\n switch (status) {\r\n case 'SUCCESS':\r\n return 'success';\r\n case 'FAILURE':\r\n return 'error';\r\n case 'CANCELLED':\r\n return 'warning';\r\n case 'STARTED':\r\n case 'QUEUED':\r\n default:\r\n return 'info';\r\n }\r\n }\r\n\r\n private handleAdminWebSocketMessage(message: WebSocketMessage): void {\r\n if (message.type === 'admin.notification') {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.SYSTEM);\r\n this.addNotification(notification);\r\n }\r\n }\r\n\r\n connect(): void {\r\n this.websocketService.connect();\r\n }\r\n\r\n connectAdmin(): void {\r\n this.adminWebSocketService.connect();\r\n }\r\n\r\n disconnect(): void {\r\n this.websocketService.disconnect();\r\n }\r\n\r\n disconnectAdmin(): void {\r\n this.adminWebSocketService.disconnect();\r\n }\r\n\r\n subscribeToMetadataTable(tableId: number): void {\r\n this.websocketService.subscribe('metadata_table_updates', { table_id: tableId });\r\n }\r\n\r\n createVanillaNotification(\r\n type: NotificationType,\r\n title: string,\r\n message: string,\r\n level: 'info' \| 'success' \| 'warning' \| 'error' = 'info',\r\n autoClose = true\r\n ): void {\r\n this.createLocalNotification(type, title, message, level, autoClose);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n OntologySuggestion\r\n} from '../models';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class OntologySearchService extends BaseApiService {\r\n\r\n /\r\n Get ontology suggestions across all sources for SDRF validation\r\n /\r\n suggest(params?: { query?: string; sources?: string[] }): Observable<OntologySuggestion[]> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<OntologySuggestion[]>(`${this.apiUrl}/ontology-search/suggest/`, { params: httpParams });\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n Schema,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\nexport interface SchemaQueryParams {\r\n search?: string;\r\n category?: string;\r\n isActive?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class SchemaService extends BaseApiService {\r\n\r\n /\r\n Get all schemas with optional filtering\r\n /\r\n getSchemas(params?: SchemaQueryParams): Observable<PaginatedResponse<Schema>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<Schema>>(`${this.apiUrl}/schemas/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single schema by ID\r\n /\r\n getSchema(id: number): Observable<Schema> {\r\n return this.get<Schema>(`${this.apiUrl}/schemas/${id}/`);\r\n }\r\n\r\n /\r\n Get list of available schemas for creating templates\r\n /\r\n getAvailableSchemas(): Observable<Schema[]> {\r\n return this.get<Schema[]>(`${this.apiUrl}/schemas/available/`);\r\n }\r\n\r\n /\r\n Sync builtin schemas from sdrf-pipelines package (admin only)\r\n /\r\n syncBuiltin(): Observable<{ message: string; synced_count: number }> {\r\n return this.post<{ message: string; synced_count: number }>(`${this.apiUrl}/schemas/sync_builtin/`, {});\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class SDRFDefaultsService extends BaseApiService {\r\n\r\n /\r\n Get all available SDRF columns with their default values\r\n /\r\n getColumns(): Observable<any[]> {\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/columns/`);\r\n }\r\n\r\n /\r\n Get default values for a specific column\r\n /\r\n getColumnValues(params: { column: string }): Observable<any[]> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/column_values/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Search for columns containing the query string\r\n /\r\n searchColumns(params: { query: string }): Observable<any[]> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/search/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get options for structured fields (key-value pairs)\r\n /\r\n getStructuredOptions(params: { field: string }): Observable<any[]> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/structured_options/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get all label options (TMT, SILAC, label-free)\r\n /\r\n getLabels(): Observable<any[]> {\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/labels/`);\r\n }\r\n\r\n /\r\n Get protein modification options (fixed and variable)\r\n /\r\n getModifications(): Observable<any[]> {\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/modifications/`);\r\n }\r\n\r\n /\r\n Get list of common instrument models\r\n /\r\n getInstruments(): Observable<any[]> {\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/instruments/`);\r\n }\r\n\r\n /\r\n Get cleavage agent options\r\n /\r\n getCleavageAgents(): Observable<any[]> {\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/cleavage_agents/`);\r\n }\r\n\r\n /\r\n Get all compound fields that require special handling\r\n /\r\n getCompoundFields(): Observable<any[]> {\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/compound_fields/`);\r\n }\r\n\r\n /\r\n Get schema for a specific compound field\r\n /\r\n getCompoundSchema(params: { field: string }): Observable<any> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<any>(`${this.apiUrl}/sdrf-defaults/compound_schema/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Validate a compound field value against its schema\r\n /\r\n validateCompound(request: { field: string; value: any }): Observable<{ valid: boolean; errors?: string[] }> {\r\n return this.post<{ valid: boolean; errors?: string[] }>(`${this.apiUrl}/sdrf-defaults/validate_compound/`, request);\r\n }\r\n\r\n /\r\n Get column name suggestions based on partial input\r\n /\r\n getSuggestions(params: { query: string }): Observable<string[]> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<string[]>(`${this.apiUrl}/sdrf-defaults/suggestions/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get quick access to commonly used value categories\r\n /\r\n getQuickValues(): Observable<any> {\r\n return this.get<any>(`${this.apiUrl}/sdrf-defaults/quick_values/`);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n AsyncTaskStatus,\r\n AsyncTaskQueryParams,\r\n AsyncTaskCreateResponse,\r\n DownloadUrlResponse,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class AsyncTaskService extends BaseApiService {\r\n\r\n /\r\n Get all async tasks for the current user with optional filtering\r\n /\r\n getAsyncTasks(params?: AsyncTaskQueryParams): Observable<PaginatedResponse<AsyncTaskStatus>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<AsyncTaskStatus>>(`${this.apiUrl}/async-tasks/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a specific async task by ID\r\n /\r\n getAsyncTask(id: string): Observable<AsyncTaskStatus> {\r\n return this.get<AsyncTaskStatus>(`${this.apiUrl}/async-tasks/${id}/`);\r\n }\r\n\r\n /\r\n Cancel a queued or running task\r\n /\r\n cancelTask(id: string): Observable<{ message: string }> {\r\n return this.delete<{ message: string }>(`${this.apiUrl}/async-tasks/${id}/cancel/`);\r\n }\r\n\r\n /\r\n Generate a signed download URL for task result file\r\n /\r\n getDownloadUrl(id: string): Observable<DownloadUrlResponse> {\r\n return this.get<DownloadUrlResponse>(`${this.apiUrl}/async-tasks/${id}/download_url/`);\r\n }\r\n\r\n /\r\n Direct download endpoint (returns blob for file download)\r\n /\r\n downloadTaskFile(id: string, token: string): Observable<Blob> {\r\n const httpParams = this.buildHttpParams({ token });\r\n return this.get(`${this.apiUrl}/async-tasks/${id}/download/`, { params: httpParams, responseType: 'blob' });\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataExportRequest,\r\n BulkExportRequest,\r\n BulkExcelExportRequest,\r\n AsyncTaskCreateResponse\r\n} from '../models';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class AsyncExportService extends BaseApiService {\r\n\r\n excelTemplate(request: MetadataExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-export/excel_template/`, request);\r\n }\r\n\r\n sdrfFile(request: MetadataExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-export/sdrf_file/`, request);\r\n }\r\n\r\n multipleSdrfFiles(request: BulkExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-export/multiple_sdrf_files/`, request);\r\n }\r\n\r\n multipleExcelTemplates(request: BulkExcelExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-export/multiple_excel_templates/`, request);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable, from } from 'rxjs';\r\nimport { switchMap } from 'rxjs/operators';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\nimport jsSHA from 'jssha';\r\n\r\nimport {\r\n ChunkedUploadStatus,\r\n ChunkedUploadRequest,\r\n ChunkedUploadResponse,\r\n ChunkedUploadCompletionRequest,\r\n ChunkedUploadCompletionResponse\r\n} from '../models';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class ChunkedUploadService extends BaseApiService {\r\n\r\n\r\n /\r\n Initialize or continue a chunked upload\r\n /\r\n uploadChunk(\r\n request: ChunkedUploadRequest,\r\n uploadId?: string,\r\n offset?: number,\r\n totalSize?: number\r\n ): Observable<ChunkedUploadResponse> {\r\n const formData = new FormData();\r\n formData.append('file', request.file);\r\n\r\n if (request.filename) {\r\n formData.append('filename', request.filename);\r\n }\r\n if (request.uploadSessionId) {\r\n formData.append('upload_session_id', request.uploadSessionId);\r\n }\r\n if (request.metadataTableId) {\r\n formData.append('metadata_table_id', request.metadataTableId.toString());\r\n }\r\n if (request.createPools !== undefined) {\r\n formData.append('create_pools', request.createPools.toString());\r\n }\r\n if (request.replaceExisting !== undefined) {\r\n formData.append('replace_existing', request.replaceExisting.toString());\r\n }\r\n\r\n const url = uploadId\r\n ? `${this.apiUrl}/chunked-upload/${uploadId}/`\r\n : `${this.apiUrl}/chunked-upload/`;\r\n\r\n const httpOptions: any = {};\r\n if (offset !== undefined && totalSize !== undefined) {\r\n const chunkEnd = offset + request.file.size - 1;\r\n httpOptions.headers = {\r\n 'Content-Range': `bytes ${offset}-${chunkEnd}/${totalSize}`\r\n };\r\n }\r\n\r\n if (uploadId) {\r\n return this.put<ChunkedUploadResponse>(url, formData, httpOptions);\r\n } else {\r\n return this.post<ChunkedUploadResponse>(url, formData, httpOptions);\r\n }\r\n }\r\n\r\n /\r\n Get chunked upload status\r\n /\r\n getUploadStatus(uploadId: string): Observable<ChunkedUploadStatus> {\r\n return this.get<ChunkedUploadStatus>(`${this.apiUrl}/chunked-upload/${uploadId}/`);\r\n }\r\n\r\n /\r\n Complete the chunked upload and process the file\r\n /\r\n completeUpload(uploadId: string, request?: ChunkedUploadCompletionRequest): Observable<ChunkedUploadCompletionResponse> {\r\n const formData = new FormData();\r\n\r\n if (request?.sha256) {\r\n formData.append('sha256', request.sha256);\r\n }\r\n if (request?.metadataTableId) {\r\n formData.append('metadata_table_id', request.metadataTableId.toString());\r\n }\r\n if (request?.createPools !== undefined) {\r\n formData.append('create_pools', request.createPools.toString());\r\n }\r\n if (request?.replaceExisting !== undefined) {\r\n formData.append('replace_existing', request.replaceExisting.toString());\r\n }\r\n\r\n return this.post<ChunkedUploadCompletionResponse>(`${this.apiUrl}/chunked-upload/${uploadId}/`, formData);\r\n }\r\n\r\n /\r\n Complete the chunked upload by uploading the entire file at once\r\n /\r\n completeUploadWithFile(request: ChunkedUploadRequest): Observable<ChunkedUploadCompletionResponse> {\r\n const hasher = new jsSHA('SHA-256', 'ARRAYBUFFER');\r\n const arrayBufferPromise = request.file.arrayBuffer();\r\n\r\n return from(arrayBufferPromise).pipe(\r\n switchMap((arrayBuffer) => {\r\n hasher.update(arrayBuffer);\r\n const hash = hasher.getHash('HEX');\r\n\r\n const formData = new FormData();\r\n formData.append('file', request.file);\r\n if (request.filename) {\r\n formData.append('filename', request.filename);\r\n }\r\n if (request.uploadSessionId) {\r\n formData.append('upload_session_id', request.uploadSessionId);\r\n }\r\n if (request.metadataTableId) {\r\n formData.append('metadata_table_id', request.metadataTableId.toString());\r\n }\r\n if (request.createPools !== undefined) {\r\n formData.append('create_pools', request.createPools.toString());\r\n }\r\n if (request.replaceExisting !== undefined) {\r\n formData.append('replace_existing', request.replaceExisting.toString());\r\n }\r\n formData.append('sha256', hash);\r\n\r\n return this.post<ChunkedUploadCompletionResponse>(`${this.apiUrl}/chunked-upload/`, formData);\r\n })\r\n );\r\n\r\n }\r\n\r\n /\r\n Delete/cancel a chunked upload\r\n /\r\n cancelUpload(uploadId: string): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/chunked-upload/${uploadId}/`);\r\n }\r\n\r\n /\r\n Helper method to upload a file in chunks with progress tracking\r\n /\r\n uploadFileInChunks(\r\n file: File,\r\n chunkSize: number = 1024 1024, // 1MB chunks by default\r\n options?: {\r\n metadataTableId?: number;\r\n createPools?: boolean;\r\n replaceExisting?: boolean;\r\n uploadSessionId?: string;\r\n onProgress?: (progress: number) => void;\r\n }\r\n ): Observable<ChunkedUploadCompletionResponse> {\r\n return new Observable(subscriber => {\r\n let uploadId: string \| undefined;\r\n let offset = 0;\r\n const totalSize = file.size;\r\n const sha256 = new jsSHA('SHA-256', 'ARRAYBUFFER');\r\n if (totalSize <= chunkSize) {\r\n this.completeUploadWithFile({\r\n file: file,\r\n filename: file.name,\r\n uploadSessionId: options?.uploadSessionId,\r\n metadataTableId: options?.metadataTableId,\r\n createPools: options?.createPools,\r\n replaceExisting: options?.replaceExisting\r\n }).subscribe({\r\n next: (result) => {\r\n subscriber.next(result);\r\n subscriber.complete();\r\n }\r\n })\r\n return;\r\n }\r\n const uploadNextChunk = () => {\r\n if (offset >= totalSize) {\r\n if (uploadId) {\r\n const calculatedHash = sha256.getHash('HEX');\r\n this.completeUpload(uploadId, {\r\n sha256: calculatedHash,\r\n metadataTableId: options?.metadataTableId,\r\n createPools: options?.createPools,\r\n replaceExisting: options?.replaceExisting\r\n }).subscribe({\r\n next: (result) => {\r\n subscriber.next(result);\r\n subscriber.complete();\r\n },\r\n error: (error) => subscriber.error(error)\r\n });\r\n } else {\r\n subscriber.error(new Error('Upload failed: No upload ID'));\r\n }\r\n return;\r\n }\r\n\r\n const end = Math.min(offset + chunkSize, totalSize);\r\n const chunk = file.slice(offset, end);\r\n const chunkFile = new File([chunk], file.name, { type: file.type });\r\n\r\n chunk.arrayBuffer().then(arrayBuffer => {\r\n sha256.update(arrayBuffer);\r\n\r\n this.uploadChunk({\r\n file: chunkFile,\r\n filename: file.name,\r\n uploadSessionId: options?.uploadSessionId,\r\n metadataTableId: options?.metadataTableId,\r\n createPools: options?.createPools,\r\n replaceExisting: options?.replaceExisting\r\n }, uploadId, offset, totalSize).subscribe({\r\n next: (response) => {\r\n uploadId = response.id;\r\n offset = response.offset;\r\n\r\n const progress = (offset / totalSize) * 100;\r\n if (options?.onProgress) {\r\n options.onProgress(progress);\r\n }\r\n\r\n uploadNextChunk();\r\n },\r\n error: (error) => subscriber.error(error)\r\n });\r\n }).catch(error => subscriber.error(error));\r\n };\r\n\r\n uploadNextChunk();\r\n });\r\n }\r\n}\r\n","import { Injectable } from '@angular/core';\r\nimport { Observable, from } from 'rxjs';\r\nimport { switchMap, map } from 'rxjs/operators';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\nimport { ChunkedUploadService } from './chunked-upload';\r\n\r\nimport {\r\n MetadataImportRequest,\r\n AsyncTaskCreateResponse\r\n} from '../models';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class AsyncImportService extends BaseApiService {\r\n\r\n constructor(private chunkedUploadService: ChunkedUploadService) {\r\n super();\r\n }\r\n\r\n sdrfFile(request: MetadataImportRequest): Observable<AsyncTaskCreateResponse> {\r\n // Always use chunked upload - it handles everything (SHA256, chunking, processing)\r\n return this.chunkedUploadService.uploadFileInChunks(\r\n request.file,\r\n 1024 * 1024, // 1MB chunks\r\n {\r\n metadataTableId: request.metadataTableId,\r\n createPools: true,\r\n replaceExisting: request.replaceExisting,\r\n onProgress: (progress) => {\r\n console.log(`SDRF upload progress: ${Math.round(progress)}%`);\r\n }\r\n }\r\n ).pipe(\r\n map(result => ({\r\n taskId: 'chunked-completed', // Processing is done immediately\r\n message: result.message \|\| 'SDRF file processed successfully',\r\n result: result\r\n } as AsyncTaskCreateResponse))\r\n );\r\n }\r\n\r\n excelFile(request: MetadataImportRequest): Observable<AsyncTaskCreateResponse> {\r\n // Always use chunked upload - it handles everything (SHA256, chunking, processing)\r\n return this.chunkedUploadService.uploadFileInChunks(\r\n request.file,\r\n 1024 * 1024, // 1MB chunks\r\n {\r\n metadataTableId: request.metadataTableId,\r\n createPools: true,\r\n replaceExisting: request.replaceExisting,\r\n onProgress: (progress) => {\r\n console.log(`Excel upload progress: ${Math.round(progress)}%`);\r\n }\r\n }\r\n ).pipe(\r\n map(result => ({\r\n taskId: 'chunked-completed', // Processing is done immediately\r\n message: result.message \|\| 'Excel file processed successfully',\r\n result: result\r\n } as AsyncTaskCreateResponse))\r\n );\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataValidationRequest,\r\n AsyncTaskCreateResponse\r\n} from '../models';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class AsyncValidationService extends BaseApiService {\r\n\r\n metadataTable(request: MetadataValidationRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-validation/metadata_table/`, request);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable, from, throwError } from 'rxjs';\r\nimport { switchMap, map, tap } from 'rxjs/operators';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\nimport { ChunkedUploadService } from './chunked-upload';\r\nimport { AsyncTaskCreateResponse, ChunkedImportRequest } from '../models';\r\n\r\nexport interface ChunkedFileImportRequest {\r\n file: File;\r\n metadataTableId: number;\r\n replaceExisting?: boolean;\r\n validateOntologies?: boolean;\r\n createPools?: boolean;\r\n}\r\n\r\nexport interface ChunkedImportProgress {\r\n uploadProgress: number;\r\n phase: 'uploading' \| 'processing' \| 'completed' \| 'failed';\r\n taskId?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class ChunkedImportService extends BaseApiService {\r\n\r\n constructor(private chunkedUploadService: ChunkedUploadService) {\r\n super();\r\n }\r\n\r\n /*\r\n Import SDRF file using chunked upload for better performance with large files\r\n /\r\n importSdrfFileChunked(request: ChunkedFileImportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.validateFileType(request.file, ['.txt', '.tsv', '.sdrf']).pipe(\r\n switchMap(() => this.uploadFileChunked(request))\r\n );\r\n }\r\n\r\n /\r\n Import Excel file using chunked upload for better performance with large files\r\n /\r\n importExcelFileChunked(request: ChunkedFileImportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.validateFileType(request.file, ['.xlsx', '.xls']).pipe(\r\n switchMap(() => this.uploadFileChunked(request))\r\n );\r\n }\r\n\r\n /\r\n Generic chunked import that auto-detects file type\r\n /\r\n importFileChunked(request: ChunkedFileImportRequest): Observable<AsyncTaskCreateResponse> {\r\n const fileExtension = this.getFileExtension(request.file.name);\r\n\r\n if (['.txt', '.tsv', '.sdrf'].includes(fileExtension)) {\r\n return this.importSdrfFileChunked(request);\r\n } else if (['.xlsx', '.xls'].includes(fileExtension)) {\r\n return this.importExcelFileChunked(request);\r\n } else {\r\n return throwError(() => new Error(`Unsupported file type: ${fileExtension}`));\r\n }\r\n }\r\n\r\n /\r\n Upload file using chunked upload with metadata processing\r\n /\r\n private uploadFileChunked(request: ChunkedFileImportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.chunkedUploadService.uploadFileInChunks(\r\n request.file,\r\n 1024 1024, // 1MB chunks\r\n {\r\n metadataTableId: request.metadataTableId,\r\n createPools: request.createPools,\r\n replaceExisting: request.replaceExisting,\r\n onProgress: (progress: number) => {\r\n // Upload progress callback - can be used for UI updates\r\n console.log(`Upload progress: ${Math.round(progress)}%`);\r\n }\r\n }\r\n ).pipe(\r\n switchMap((uploadResult) => {\r\n // Once upload is complete, trigger async processing\r\n return this.triggerAsyncImport(uploadResult, request);\r\n })\r\n );\r\n }\r\n\r\n /*\r\n Trigger async import processing after chunked upload completion\r\n * This uses the existing async-import endpoints but with chunked upload completion\r\n /\r\n private triggerAsyncImport(uploadResult: any, request: ChunkedFileImportRequest): Observable<AsyncTaskCreateResponse> {\r\n // The chunked upload has completed, now we need to trigger async processing\r\n // We'll use the file from the completed upload result\r\n\r\n const fileExtension = this.getFileExtension(request.file?.name \|\| '');\r\n\r\n if (['.txt', '.tsv', '.sdrf'].includes(fileExtension)) {\r\n // For SDRF files, we need to read the file content as text\r\n return from(request.file.text()).pipe(\r\n switchMap(fileContent => {\r\n const formData = new FormData();\r\n formData.append('metadata_table_id', request.metadataTableId.toString());\r\n formData.append('file_content', fileContent);\r\n formData.append('filename', request.file.name);\r\n\r\n if (request.replaceExisting !== undefined) {\r\n formData.append('replace_existing', request.replaceExisting.toString());\r\n }\r\n if (request.validateOntologies !== undefined) {\r\n formData.append('validate_ontologies', request.validateOntologies.toString());\r\n }\r\n\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-import/sdrf_file/`, formData);\r\n })\r\n );\r\n } else {\r\n // For Excel files, we can pass the file directly\r\n const formData = new FormData();\r\n formData.append('metadata_table_id', request.metadataTableId.toString());\r\n formData.append('file', request.file);\r\n\r\n if (request.replaceExisting !== undefined) {\r\n formData.append('replace_existing', request.replaceExisting.toString());\r\n }\r\n if (request.validateOntologies !== undefined) {\r\n formData.append('validate_ontologies', request.validateOntologies.toString());\r\n }\r\n\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-import/excel_file/`, formData);\r\n }\r\n }\r\n\r\n /\r\n Validate file type\r\n /\r\n private validateFileType(file: File, allowedExtensions: string[]): Observable<File> {\r\n const fileExtension = this.getFileExtension(file.name);\r\n\r\n if (!allowedExtensions.includes(fileExtension)) {\r\n return throwError(() => new Error(\r\n `Invalid file type. Expected: ${allowedExtensions.join(', ')}, got: ${fileExtension}`\r\n ));\r\n }\r\n\r\n return from(Promise.resolve(file));\r\n }\r\n\r\n /\r\n Get file extension from filename\r\n /\r\n private getFileExtension(filename: string): string {\r\n const lastDot = filename.lastIndexOf('.');\r\n return lastDot !== -1 ? filename.substring(lastDot).toLowerCase() : '';\r\n }\r\n\r\n /\r\n Create progress observable for UI updates\r\n /\r\n createProgressObservable(\r\n request: ChunkedFileImportRequest,\r\n onProgress?: (progress: ChunkedImportProgress) => void\r\n ): Observable<AsyncTaskCreateResponse> {\r\n return new Observable(observer => {\r\n let currentPhase: ChunkedImportProgress['phase'] = 'uploading';\r\n\r\n // Report initial state\r\n if (onProgress) {\r\n onProgress({ uploadProgress: 0, phase: currentPhase });\r\n }\r\n\r\n // Start chunked upload with progress tracking\r\n this.chunkedUploadService.uploadFileInChunks(\r\n request.file,\r\n 1024 1024, // 1MB chunks\r\n {\r\n metadataTableId: request.metadataTableId,\r\n createPools: request.createPools,\r\n replaceExisting: request.replaceExisting,\r\n onProgress: (progress: number) => {\r\n if (onProgress && currentPhase === 'uploading') {\r\n onProgress({\r\n uploadProgress: progress,\r\n phase: currentPhase\r\n });\r\n }\r\n }\r\n }\r\n ).pipe(\r\n tap(() => {\r\n // Upload completed, now processing\r\n currentPhase = 'processing';\r\n if (onProgress) {\r\n onProgress({ uploadProgress: 100, phase: currentPhase });\r\n }\r\n }),\r\n switchMap((uploadResult) => {\r\n return this.triggerAsyncImport(uploadResult, request);\r\n })\r\n ).subscribe({\r\n next: (result) => {\r\n currentPhase = 'completed';\r\n if (onProgress) {\r\n onProgress({\r\n uploadProgress: 100,\r\n phase: currentPhase,\r\n taskId: result.taskId\r\n });\r\n }\r\n observer.next(result);\r\n observer.complete();\r\n },\r\n error: (error) => {\r\n currentPhase = 'failed';\r\n if (onProgress) {\r\n onProgress({ uploadProgress: 0, phase: currentPhase });\r\n }\r\n observer.error(error);\r\n }\r\n });\r\n });\r\n }\r\n\r\n /*\r\n Queue chunked file import task using completed chunked upload\r\n * This uses the new backend endpoint that processes already uploaded chunks\r\n /\r\n processChunkedUpload(request: ChunkedImportRequest): Observable<AsyncTaskCreateResponse> {\r\n const payload = {\r\n metadataTableId: request.metadataTableId,\r\n chunkedUploadId: request.chunkedUploadId,\r\n replaceExisting: request.replaceExisting,\r\n validateOntologies: request.validateOntologies,\r\n createPools: request.createPools\r\n };\r\n\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-import/chunked_file/`, payload);\r\n }\r\n}\r\n","import { Injectable } from '@angular/core';\n\nexport interface AgeFormat {\n years?: number;\n months?: number;\n days?: number;\n isRange?: boolean;\n rangeStart?: AgeFormat;\n rangeEnd?: AgeFormat;\n}\n\nexport interface ModificationParameters {\n NT?: string; // Name of Term (supports typeahead)\n AC?: string; // Accession\n CF?: string; // Chemical Formula\n MT?: string; // Modification Type (Fixed/Variable/Annotated)\n PP?: string; // Position in Polypeptide\n TA?: string; // Target Amino acid\n MM?: string; // Monoisotopic Mass\n TS?: string; // Target Site regex\n}\n\nexport interface CleavageAgentDetails {\n NT?: string; // Name of Term (supports typeahead)\n AC?: string; // Accession\n CS?: string; // Cleavage Site regex\n}\n\nexport interface SpikedCompound {\n SP?: string; // spike name\n CT?: string; // compound type\n QY?: string; // quantity\n PS?: string; // purity specification\n AC?: string; // accession\n CN?: string; // compound name\n CV?: string; // controlled vocabulary\n CS?: string; // chemical structure\n CF?: string; // chemical formula\n}\n\nexport interface PooledSample {\n value: 'not pooled' \| 'pooled' \| string; // string for SN=sample1,sample2 format\n sourceNames?: string[]; // parsed source names when SN= format is used\n}\n\nexport interface SyntheticPeptide {\n value: 'synthetic' \| 'not synthetic';\n}\n\nexport interface ValidationResult {\n isValid: boolean;\n errors: string[];\n warnings?: string[];\n}\n\nexport type SyntaxType = 'age' \| 'modification' \| 'cleavage' \| 'spiked_compound' \| 'pooled_sample' \| 'synthetic_peptide';\n\n@Injectable({\n providedIn: 'root'\n})\nexport class SdrfSyntaxService {\n\n private readonly SPECIAL_COLUMN_PATTERNS = {\n age: /^characteristics\\[age\\]$/i,\n modification: /^comment\\[modification parameters\\]$/i,\n cleavage: /^comment\\[cleavage agent details\\]$/i,\n spiked_compound: /^characteristics\\[spiked compound\\]$/i,\n pooled_sample: /^characteristics\\[pooled sample\\]$/i,\n synthetic_peptide: /^characteristics\\[synthetic peptide\\]$/i\n };\n\n private readonly MODIFICATION_KEYS = ['NT', 'AC', 'CF', 'MT', 'PP', 'TA', 'MM', 'TS'];\n private readonly CLEAVAGE_KEYS = ['NT', 'AC', 'CS'];\n private readonly SPIKED_COMPOUND_KEYS = ['SP', 'CT', 'QY', 'PS', 'AC', 'CN', 'CV', 'CS', 'CF'];\n private readonly POOLED_SAMPLE_VALUES = ['not pooled', 'pooled'];\n private readonly SYNTHETIC_PEPTIDE_VALUES = ['synthetic', 'not synthetic'];\n\n /\n Detects if a column requires special SDRF syntax handling\n /\n detectSpecialSyntax(columnName: string, columnType: string): SyntaxType \| null {\n const name = columnName.toLowerCase();\n const type = columnType.toLowerCase();\n\n if (this.SPECIAL_COLUMN_PATTERNS.age.test(name) \|\| this.SPECIAL_COLUMN_PATTERNS.age.test(type)) {\n return 'age';\n }\n \n if (this.SPECIAL_COLUMN_PATTERNS.modification.test(name) \|\| this.SPECIAL_COLUMN_PATTERNS.modification.test(type)) {\n return 'modification';\n }\n \n if (this.SPECIAL_COLUMN_PATTERNS.cleavage.test(name) \|\| this.SPECIAL_COLUMN_PATTERNS.cleavage.test(type)) {\n return 'cleavage';\n }\n \n if (this.SPECIAL_COLUMN_PATTERNS.spiked_compound.test(name) \|\| this.SPECIAL_COLUMN_PATTERNS.spiked_compound.test(type)) {\n return 'spiked_compound';\n }\n\n return null;\n }\n\n /\n Parses a value based on the syntax type\n /\n parseValue(syntaxType: SyntaxType, value: string): any {\n if (!value \|\| value.trim() === '') {\n return null;\n }\n\n try {\n switch (syntaxType) {\n case 'age':\n return this.parseAgeFormat(value);\n case 'modification':\n return this.parseKeyValuePairs(value, this.MODIFICATION_KEYS);\n case 'cleavage':\n return this.parseKeyValuePairs(value, this.CLEAVAGE_KEYS);\n case 'spiked_compound':\n return this.parseKeyValuePairs(value, this.SPIKED_COMPOUND_KEYS);\n default:\n throw new Error(`Unknown syntax type: ${syntaxType}`);\n }\n } catch (error) {\n console.error(`Error parsing ${syntaxType} value:`, error);\n return null;\n }\n }\n\n /\n Formats parsed data back to string format\n /\n formatValue(syntaxType: SyntaxType, data: any): string {\n if (!data) {\n return '';\n }\n\n try {\n switch (syntaxType) {\n case 'age':\n return this.formatAgeFormat(data as AgeFormat);\n case 'modification':\n case 'cleavage':\n case 'spiked_compound':\n return this.formatKeyValuePairs(data);\n default:\n throw new Error(`Unknown syntax type: ${syntaxType}`);\n }\n } catch (error) {\n console.error(`Error formatting ${syntaxType} value:`, error);\n return '';\n }\n }\n\n /\n Validates parsed data\n /\n validateValue(syntaxType: SyntaxType, data: any): ValidationResult {\n const result: ValidationResult = {\n isValid: true,\n errors: [],\n warnings: []\n };\n\n if (!data) {\n result.isValid = false;\n result.errors.push('Value is required');\n return result;\n }\n\n try {\n switch (syntaxType) {\n case 'age':\n return this.validateAgeFormat(data as AgeFormat);\n case 'modification':\n return this.validateModificationParameters(data as ModificationParameters);\n case 'cleavage':\n return this.validateCleavageAgentDetails(data as CleavageAgentDetails);\n case 'spiked_compound':\n return this.validateSpikedCompound(data as SpikedCompound);\n default:\n result.isValid = false;\n result.errors.push(`Unknown syntax type: ${syntaxType}`);\n }\n } catch (error) {\n result.isValid = false;\n result.errors.push(`Validation error: ${error}`);\n }\n\n return result;\n }\n\n\n private parseAgeFormat(value: string): AgeFormat {\n const trimmed = value.trim();\n \n if (trimmed.includes('-')) {\n const [startStr, endStr] = trimmed.split('-').map(s => s.trim());\n return {\n isRange: true,\n rangeStart: this.parseSingleAge(startStr),\n rangeEnd: this.parseSingleAge(endStr)\n };\n }\n\n return this.parseSingleAge(trimmed);\n }\n\n private parseSingleAge(ageStr: string): AgeFormat {\n const age: AgeFormat = {};\n \n const yearMatch = ageStr.match(/(\\d+)Y/);\n const monthMatch = ageStr.match(/(\\d+)M/);\n const dayMatch = ageStr.match(/(\\d+)D/);\n\n if (yearMatch) {\n age.years = parseInt(yearMatch[1], 10);\n }\n if (monthMatch) {\n age.months = parseInt(monthMatch[1], 10);\n }\n if (dayMatch) {\n age.days = parseInt(dayMatch[1], 10);\n }\n\n return age;\n }\n\n private formatAgeFormat(age: AgeFormat): string {\n if (age.isRange && age.rangeStart && age.rangeEnd) {\n return `${this.formatSingleAge(age.rangeStart)}-${this.formatSingleAge(age.rangeEnd)}`;\n }\n\n return this.formatSingleAge(age);\n }\n\n private formatSingleAge(age: AgeFormat): string {\n let result = '';\n if (age.years) result += `${age.years}Y`;\n if (age.months) result += `${age.months}M`;\n if (age.days) result += `${age.days}D`;\n return result;\n }\n\n private parseKeyValuePairs(value: string, validKeys: string[]): any {\n const result: any = {};\n \n const pairs = value.split(';').map(pair => pair.trim()).filter(pair => pair);\n \n for (const pair of pairs) {\n const [key, ...valueParts] = pair.split('=');\n const keyTrimmed = key?.trim();\n const valueTrimmed = valueParts.join('=').trim();\n\n if (keyTrimmed && validKeys.includes(keyTrimmed)) {\n result[keyTrimmed] = valueTrimmed;\n }\n }\n\n return result;\n }\n\n private formatKeyValuePairs(data: any): string {\n const pairs: string[] = [];\n \n for (const [key, value] of Object.entries(data)) {\n if (value !== null && value !== undefined && value !== '') {\n pairs.push(`${key}=${value}`);\n }\n }\n\n return pairs.join(';');\n }\n\n private validateAgeFormat(age: AgeFormat): ValidationResult {\n const result: ValidationResult = { isValid: true, errors: [], warnings: [] };\n\n if (age.isRange) {\n if (!age.rangeStart \|\| !age.rangeEnd) {\n result.isValid = false;\n result.errors.push('Range format requires both start and end values');\n return result;\n }\n\n const startValidation = this.validateSingleAge(age.rangeStart);\n const endValidation = this.validateSingleAge(age.rangeEnd);\n\n if (!startValidation.isValid) {\n result.isValid = false;\n result.errors.push(...startValidation.errors.map(e => `Range start: ${e}`));\n }\n\n if (!endValidation.isValid) {\n result.isValid = false;\n result.errors.push(...endValidation.errors.map(e => `Range end: ${e}`));\n }\n } else {\n const singleValidation = this.validateSingleAge(age);\n if (!singleValidation.isValid) {\n result.isValid = false;\n result.errors.push(...singleValidation.errors);\n }\n }\n\n return result;\n }\n\n private validateSingleAge(age: AgeFormat): ValidationResult {\n const result: ValidationResult = { isValid: true, errors: [] };\n\n if (!age.years && !age.months && !age.days) {\n result.isValid = false;\n result.errors.push('At least one age component (years, months, or days) is required');\n }\n\n if (age.years !== undefined && (age.years < 0 \|\| age.years > 200)) {\n result.isValid = false;\n result.errors.push('Years must be between 0 and 200');\n }\n\n if (age.months !== undefined && (age.months < 0 \|\| age.months > 11)) {\n result.isValid = false;\n result.errors.push('Months must be between 0 and 11');\n }\n\n if (age.days !== undefined && (age.days < 0 \|\| age.days > 31)) {\n result.isValid = false;\n result.errors.push('Days must be between 0 and 31');\n }\n\n return result;\n }\n\n private validateModificationParameters(params: ModificationParameters): ValidationResult {\n const result: ValidationResult = { isValid: true, errors: [], warnings: [] };\n\n const hasAnyParam = Object.values(params).some(value => value !== undefined && value !== '');\n if (!hasAnyParam) {\n result.isValid = false;\n result.errors.push('At least one modification parameter is required');\n }\n\n if (params.PP && !/^\\d+$/.test(params.PP)) {\n result.errors.push('PP (protein position) must be a number');\n result.isValid = false;\n }\n\n if (params.MM && !/^\\d+(\\.\\d+)?$/.test(params.MM)) {\n result.errors.push('MM (monoisotopic mass) must be a valid number');\n result.isValid = false;\n }\n\n return result;\n }\n\n private validateCleavageAgentDetails(details: CleavageAgentDetails): ValidationResult {\n const result: ValidationResult = { isValid: true, errors: [] };\n\n const hasAnyDetail = Object.values(details).some(value => value !== undefined && value !== '');\n if (!hasAnyDetail) {\n result.isValid = false;\n result.errors.push('At least one cleavage agent detail is required');\n }\n\n return result;\n }\n\n private validateSpikedCompound(compound: SpikedCompound): ValidationResult {\n const result: ValidationResult = { isValid: true, errors: [], warnings: [] };\n\n const hasAnyParam = Object.values(compound).some(value => value !== undefined && value !== '');\n if (!hasAnyParam) {\n result.isValid = false;\n result.errors.push('At least one spiked compound parameter is required');\n }\n\n if (compound.QY && !/^\\d+(\\.\\d+)?\\s(mg\|g\|kg\|μg\|ng\|pg\|M\|mM\|μM\|nM\|pM)?$/i.test(compound.QY)) {\n result.warnings?.push('QY (quantity) format may not be standard - consider using standard units');\n }\n\n return result;\n }\n\n getPooledSampleValues(): string[] {\n return [...this.POOLED_SAMPLE_VALUES];\n }\n\n getSyntheticPeptideValues(): string[] {\n return [...this.SYNTHETIC_PEPTIDE_VALUES];\n }\n}\n","import { Injectable } from '@angular/core';\r\nimport { Observable, NEVER } from 'rxjs';\r\n\r\nexport interface ElectronAPI {\r\n platform: string;\r\n isElectron: boolean;\r\n getAppVersion(): Promise<string>;\r\n getElectronVersion(): Promise<string>;\r\n minimize(): void;\r\n maximize(): void;\r\n close(): void;\r\n isMaximized(): Promise<boolean>;\r\n showOpenDialog(options?: any): Promise<any>;\r\n showSaveDialog(options?: any): Promise<any>;\r\n showMessageBox(options: any): Promise<any>;\r\n downloadFile(url: string, filename?: string): Promise<string>;\r\n getBackendPort(): Promise<number>;\r\n isBackendReady(): Promise<boolean>;\r\n onBackendStatusChange(callback: (status: any) => void): () => void;\r\n onWindowStateChange(callback: (state: 'maximized' \| 'unmaximized') => void): () => void;\r\n}\r\n\r\ndeclare global {\r\n interface Window {\r\n electronAPI?: ElectronAPI;\r\n }\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class ElectronService {\r\n private electronAPI: ElectronAPI \| null = null;\r\n\r\n constructor() {\r\n this.electronAPI = window.electronAPI \|\| null;\r\n }\r\n\r\n get isElectron(): boolean {\r\n return this.electronAPI?.isElectron ?? false;\r\n }\r\n\r\n get platform(): string {\r\n return this.electronAPI?.platform ?? 'web';\r\n }\r\n\r\n async getAppVersion(): Promise<string> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.getAppVersion();\r\n }\r\n\r\n async getElectronVersion(): Promise<string> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.getElectronVersion();\r\n }\r\n\r\n minimize(): void {\r\n if (!this.electronAPI) return;\r\n this.electronAPI.minimize();\r\n }\r\n\r\n maximize(): void {\r\n if (!this.electronAPI) return;\r\n this.electronAPI.maximize();\r\n }\r\n\r\n close(): void {\r\n if (!this.electronAPI) return;\r\n this.electronAPI.close();\r\n }\r\n\r\n async isMaximized(): Promise<boolean> {\r\n if (!this.electronAPI) return false;\r\n return this.electronAPI.isMaximized();\r\n }\r\n\r\n async showOpenDialog(options?: any): Promise<any> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.showOpenDialog(options);\r\n }\r\n\r\n async showSaveDialog(options?: any): Promise<any> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.showSaveDialog(options);\r\n }\r\n\r\n async showMessageBox(options: any): Promise<any> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.showMessageBox(options);\r\n }\r\n\r\n async downloadFile(url: string, filename?: string): Promise<string> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.downloadFile(url, filename);\r\n }\r\n\r\n async getBackendPort(): Promise<number> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.getBackendPort();\r\n }\r\n\r\n async isBackendReady(): Promise<boolean> {\r\n if (!this.electronAPI) return false;\r\n return this.electronAPI.isBackendReady();\r\n }\r\n\r\n onBackendStatusChange(): Observable<any> {\r\n if (!this.electronAPI) return NEVER;\r\n\r\n return new Observable(observer => {\r\n const unsubscribe = this.electronAPI!.onBackendStatusChange((status: any) => {\r\n observer.next(status);\r\n });\r\n\r\n return () => unsubscribe();\r\n });\r\n }\r\n\r\n onWindowStateChange(): Observable<'maximized' \| 'unmaximized'> {\r\n if (!this.electronAPI) return NEVER;\r\n\r\n return new Observable(observer => {\r\n const unsubscribe = this.electronAPI!.onWindowStateChange((state: 'maximized' \| 'unmaximized') => {\r\n observer.next(state);\r\n });\r\n\r\n return () => unsubscribe();\r\n });\r\n }\r\n}","import { Component, Input, Output, EventEmitter, OnInit, inject } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { SdrfSyntaxService, AgeFormat } from '../../services/sdrf-syntax';\n\n@Component({\n selector: 'ccv-sdrf-age-input',\n imports: [CommonModule, ReactiveFormsModule],\n templateUrl: './sdrf-age-input.html',\n styleUrl: './sdrf-age-input.scss'\n})\nexport class SdrfAgeInput implements OnInit {\n @Input() value: string = '';\n @Output() valueChange = new EventEmitter<string>();\n\n private fb = inject(FormBuilder);\n private sdrfSyntax = inject(SdrfSyntaxService);\n\n ageForm!: FormGroup;\n isRange = false;\n\n ngOnInit() {\n this.ageForm = this.fb.group({\n isRange: [false],\n years: [null, [Validators.min(0), Validators.max(200)]],\n months: [null, [Validators.min(0), Validators.max(11)]],\n days: [null, [Validators.min(0), Validators.max(31)]],\n weeks: [null, [Validators.min(0), Validators.max(520)]],\n rangeStartYears: [null, [Validators.min(0), Validators.max(200)]],\n rangeStartMonths: [null, [Validators.min(0), Validators.max(11)]],\n rangeEndYears: [null, [Validators.min(0), Validators.max(200)]],\n rangeEndMonths: [null, [Validators.min(0), Validators.max(11)]]\n });\n\n // Parse initial value\n if (this.value) {\n this.parseAndSetValue(this.value);\n }\n\n // Subscribe to form changes\n this.ageForm.valueChanges.subscribe(() => {\n this.updateValue();\n });\n\n // Subscribe to range toggle\n this.ageForm.get('isRange')?.valueChanges.subscribe((isRange) => {\n this.isRange = isRange;\n this.updateValue();\n });\n }\n\n private parseAndSetValue(value: string) {\n try {\n const parsed = this.sdrfSyntax.parseValue('age', value) as AgeFormat;\n if (parsed.isRange && parsed.rangeStart && parsed.rangeEnd) {\n this.ageForm.patchValue({\n isRange: true,\n rangeStartYears: parsed.rangeStart.years,\n rangeStartMonths: parsed.rangeStart.months,\n rangeEndYears: parsed.rangeEnd.years,\n rangeEndMonths: parsed.rangeEnd.months\n });\n this.isRange = true;\n } else {\n this.ageForm.patchValue({\n isRange: false,\n years: parsed.years,\n months: parsed.months,\n days: parsed.days\n });\n }\n } catch (error) {\n console.warn('Could not parse age value:', value);\n }\n }\n\n private updateValue() {\n const formValue = this.ageForm.value;\n \n if (formValue.isRange) {\n if (formValue.rangeStartYears \|\| formValue.rangeEndYears) {\n const ageData: AgeFormat = {\n isRange: true,\n rangeStart: {\n years: formValue.rangeStartYears \|\| 0,\n months: formValue.rangeStartMonths \|\| 0\n },\n rangeEnd: {\n years: formValue.rangeEndYears \|\| 0,\n months: formValue.rangeEndMonths \|\| 0\n }\n };\n \n const formatted = this.sdrfSyntax.formatValue('age', ageData);\n this.valueChange.emit(formatted);\n }\n } else {\n if (formValue.years \|\| formValue.months \|\| formValue.days \|\| formValue.weeks) {\n const ageData: AgeFormat = {\n years: formValue.years \|\| undefined,\n months: formValue.months \|\| undefined,\n days: formValue.days \|\| undefined\n };\n \n // Handle weeks separately (convert to special format)\n if (formValue.weeks && !formValue.years && !formValue.months && !formValue.days) {\n const formatted = `${formValue.weeks}W`;\n this.valueChange.emit(formatted);\n } else {\n const formatted = this.sdrfSyntax.formatValue('age', ageData);\n this.valueChange.emit(formatted);\n }\n }\n }\n }\n}\n","<form [formGroup]=\"ageForm\" class=\"age-input-form\">\n <!-- Range Toggle -->\n <div class=\"form-check mb-3\">\n <input class=\"form-check-input\" type=\"checkbox\" id=\"isRange\" formControlName=\"isRange\">\n <label class=\"form-check-label\" for=\"isRange\">\n Age Range\n </label>\n </div>\n\n <!-- Single Age Input -->\n @if (!isRange) {\n <div class=\"row g-2 mb-2\">\n <div class=\"col-sm-3\">\n <label for=\"years\" class=\"form-label\">Years</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"years\" \n formControlName=\"years\" placeholder=\"0\" min=\"0\" max=\"200\">\n </div>\n <div class=\"col-sm-3\">\n <label for=\"months\" class=\"form-label\">Months</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"months\" \n formControlName=\"months\" placeholder=\"0\" min=\"0\" max=\"11\">\n </div>\n <div class=\"col-sm-3\">\n <label for=\"days\" class=\"form-label\">Days</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"days\" \n formControlName=\"days\" placeholder=\"0\" min=\"0\" max=\"31\">\n </div>\n <div class=\"col-sm-3\">\n <label for=\"weeks\" class=\"form-label\">Weeks <small class=\"text-muted\">(alternative)</small></label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"weeks\" \n formControlName=\"weeks\" placeholder=\"0\" min=\"0\" max=\"520\">\n </div>\n </div>\n <div class=\"form-text\">\n Use weeks for very young subjects (e.g., \"8W\" for 8 weeks). Otherwise use years/months/days.\n </div>\n }\n\n <!-- Age Range Input -->\n @if (isRange) {\n <div class=\"row g-2 mb-2\">\n <div class=\"col-sm-6\">\n <label class=\"form-label fw-semibold\">Start Age</label>\n <div class=\"row g-1\">\n <div class=\"col-6\">\n <label for=\"rangeStartYears\" class=\"form-label small\">Years</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"rangeStartYears\" \n formControlName=\"rangeStartYears\" placeholder=\"0\" min=\"0\" max=\"200\">\n </div>\n <div class=\"col-6\">\n <label for=\"rangeStartMonths\" class=\"form-label small\">Months</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"rangeStartMonths\" \n formControlName=\"rangeStartMonths\" placeholder=\"0\" min=\"0\" max=\"11\">\n </div>\n </div>\n </div>\n <div class=\"col-sm-6\">\n <label class=\"form-label fw-semibold\">End Age</label>\n <div class=\"row g-1\">\n <div class=\"col-6\">\n <label for=\"rangeEndYears\" class=\"form-label small\">Years</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"rangeEndYears\" \n formControlName=\"rangeEndYears\" placeholder=\"0\" min=\"0\" max=\"200\">\n </div>\n <div class=\"col-6\">\n <label for=\"rangeEndMonths\" class=\"form-label small\">Months</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"rangeEndMonths\" \n formControlName=\"rangeEndMonths\" placeholder=\"0\" min=\"0\" max=\"11\">\n </div>\n </div>\n </div>\n </div>\n <div class=\"form-text\">\n Age range format: \"25Y-30Y\" or \"2Y6M-3Y\"\n </div>\n }\n\n <!-- Validation Messages -->\n @if (ageForm.invalid && ageForm.touched) {\n <div class=\"alert alert-warning alert-sm mt-2\">\n <small>\n <i class=\"bi bi-exclamation-triangle me-1\"></i>\n Please enter valid age values (0-200 years, 0-11 months, 0-31 days)\n </small>\n </div>\n }\n</form>\n","import { Component, Input, Output, EventEmitter, OnInit, OnChanges, SimpleChanges, inject, signal } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbTypeahead, NgbModule } from '@ng-bootstrap/ng-bootstrap';\nimport { Observable, OperatorFunction, debounceTime, distinctUntilChanged, filter, map, switchMap, of, catchError } from 'rxjs';\nimport { SdrfSyntaxService, ModificationParameters } from '../../services/sdrf-syntax';\nimport {\n OntologySuggestion,\n UnimodFullData,\n UnimodSpecification,\n isUnimodFullData,\n OntologyUtils,\n OntologyType\n} from '../../models';\nimport {\n MetadataColumnService,\n MetadataColumnTemplateService\n} from '../../services';\n\n@Component({\n selector: 'ccv-sdrf-modification-input',\n imports: [CommonModule, ReactiveFormsModule, NgbTypeahead, NgbModule],\n templateUrl: './sdrf-modification-input.html',\n styleUrl: './sdrf-modification-input.scss'\n})\nexport class SdrfModificationInput implements OnInit {\n @Input() value: string = '';\n @Input() templateId: number \| null = null; // Template ID for ontology suggestions\n @Input() columnId: number \| null = null; // Column ID for ontology suggestions (actual metadata column)\n @Output() valueChange = new EventEmitter<string>();\n\n // Search type for typeahead - internal signal\n searchType = signal<'icontains' \| 'istartswith'>('icontains');\n\n private fb = inject(FormBuilder);\n private sdrfSyntax = inject(SdrfSyntaxService);\n private metadataColumnService = inject(MetadataColumnService);\n private metadataColumnTemplateService = inject(MetadataColumnTemplateService);\n\n modificationForm!: FormGroup;\n\n // Predefined options for dropdowns\n modificationTypes = ['Fixed', 'Variable', 'Annotated'];\n positions = ['Anywhere', 'Protein N-term', 'Protein C-term', 'Any N-term', 'Any C-term'];\n\n // Unimod specification support\n selectedUnimodData = signal<UnimodFullData \| null>(null);\n availableSpecifications = signal<(UnimodSpecification & { specNumber: string })[]>([]);\n selectedSpecification = signal<string \| null>(null);\n showSpecifications = signal(false);\n showHiddenSpecifications = signal(false);\n hiddenSpecificationCount = signal(0);\n\n ngOnInit() {\n this.modificationForm = this.fb.group({\n NT: ['', Validators.required], // Name of Term - with typeahead\n AC: [''], // Accession\n CF: [''], // Chemical Formula\n MT: [''], // Modification Type\n PP: [''], // Position in Polypeptide\n TA: ['', Validators.required], // Target Amino acid\n MM: ['', [Validators.pattern(/^\\d+(\\.\\d+)?$/)]], // Monoisotopic Mass\n TS: [''] // Target Site regex\n });\n\n // Parse initial value\n if (this.value) {\n this.parseAndSetValue(this.value);\n }\n\n // Subscribe to form changes\n this.modificationForm.valueChanges.subscribe(() => {\n this.updateValue();\n });\n }\n\n private parseAndSetValue(value: string) {\n try {\n const parsed = this.sdrfSyntax.parseValue('modification', value) as ModificationParameters;\n this.modificationForm.patchValue(parsed);\n } catch (error) {\n console.warn('Could not parse modification value:', value);\n }\n }\n\n // Helper method to ensure we get string values from form controls\n private getStringValue(value: any): string {\n if (typeof value === 'string') {\n return value.trim();\n }\n \n // Handle objects from typeahead selection (OntologySuggestion)\n if (value && typeof value === 'object') {\n // For Unimod modifications, use the name from full_data\n if (value.fullData && value.fullData.name) {\n return value.fullData.name;\n }\n // For other ontology types, use the value property\n if (value.value) return value.value;\n if (value.name) return value.name;\n }\n \n // Fallback to string conversion\n return value ? String(value).trim() : '';\n }\n\n private updateValue() {\n const formValue = this.modificationForm.value;\n\n // Only emit if we have required fields\n if (formValue.NT && formValue.TA) {\n // Build cleaned value, ensuring NT is always included and properly stringified\n const cleanedValue: ModificationParameters = {\n NT: this.getStringValue(formValue.NT), // Always include NT field as string\n TA: this.getStringValue(formValue.TA) // Always include TA field as string\n };\n\n // Add other non-empty fields\n Object.keys(formValue).forEach(key => {\n if (key !== 'NT' && key !== 'TA') { // Skip NT and TA as they're already added\n const value = formValue[key];\n const stringValue = this.getStringValue(value);\n if (stringValue) {\n cleanedValue[key as keyof ModificationParameters] = stringValue;\n }\n }\n });\n\n const formatted = this.sdrfSyntax.formatValue('modification', cleanedValue);\n this.valueChange.emit(formatted);\n } else if (!formValue.NT && !formValue.TA) {\n // If both required fields are empty, emit empty string\n this.valueChange.emit('');\n }\n }\n\n // Typeahead for NT field (Name of Term) - using ontology suggestions from API\n searchModificationTerms: OperatorFunction<string, readonly OntologySuggestion[]> = (text$: Observable<string>) =>\n text$.pipe(\n debounceTime(200),\n distinctUntilChanged(),\n filter(term => term.length >= 2),\n switchMap(term => {\n // Use column ID first if available (for actual metadata columns), otherwise template ID (for templates/favorites)\n if (this.columnId) {\n return this.metadataColumnService.getOntologySuggestions({\n columnId: this.columnId,\n search: term,\n limit: 10,\n searchType: this.searchType()\n }).pipe(\n map(response => response.suggestions \|\| []),\n catchError(error => {\n console.warn(`Failed to get ontology suggestions for column ${this.columnId}:`, error);\n return of([]);\n })\n );\n } else if (this.templateId) {\n return this.metadataColumnTemplateService.getOntologySuggestions({\n templateId: this.templateId,\n search: term,\n limit: 10,\n searchType: this.searchType()\n }).pipe(\n map(response => response.suggestions \|\| []),\n catchError(error => {\n console.warn(`Failed to get ontology suggestions for template ${this.templateId}:`, error);\n return of([]);\n })\n );\n } else {\n // No ID available, return empty suggestions\n return of([]);\n }\n })\n );\n\n // Formatter for ontology suggestions\n formatOntologySuggestion = (suggestion: OntologySuggestion): string => {\n return suggestion.displayName \|\| suggestion.value;\n };\n\n // Handle ontology suggestion selection\n onOntologySuggestionSelected = (event: any): void => {\n const suggestion: OntologySuggestion = event.item;\n if (suggestion) {\n // Set the NT field value - use display name for Unimod, otherwise use value\n const ntValue = isUnimodFullData(suggestion) && suggestion.fullData.name\n ? suggestion.fullData.name\n : (suggestion.displayName \|\| suggestion.value);\n this.modificationForm.patchValue({ NT: ntValue });\n\n // Check if this is a Unimod modification with specifications\n if (isUnimodFullData(suggestion)) {\n this.selectedUnimodData.set(suggestion.fullData);\n this.updateAvailableSpecifications(suggestion);\n this.showSpecifications.set(this.availableSpecifications().length > 0);\n\n // Auto-fill some fields from main Unimod data\n if (suggestion.fullData.accession) {\n this.modificationForm.patchValue({ AC: suggestion.fullData.accession });\n }\n if (suggestion.fullData.deltaComposition) {\n this.modificationForm.patchValue({ CF: suggestion.fullData.deltaComposition });\n }\n if (suggestion.fullData.deltaMonoMass) {\n this.modificationForm.patchValue({ MM: suggestion.fullData.deltaMonoMass });\n }\n } else {\n // Not a Unimod modification, clear specification data\n this.selectedUnimodData.set(null);\n this.availableSpecifications.set([]);\n this.showSpecifications.set(false);\n this.selectedSpecification.set(null);\n }\n }\n };\n\n // Format TA field display (amino acids)\n formatTargetAminoAcids(value: string): string {\n if (!value) return '';\n // Split by comma and clean up\n return value.split(',').map(aa => aa.trim().toUpperCase()).join(', ');\n }\n\n onTargetAminoAcidChange(event: any) {\n const value = event.target.value;\n if (value) {\n // Format as uppercase and validate amino acid letters\n const formatted = value\n .replace(/[^A-Za-z,]/g, '') // Only allow letters and commas\n .split(',')\n .map((aa: string) => aa.trim().toUpperCase())\n .filter((aa: string) => aa.length > 0)\n .join(',');\n\n this.modificationForm.patchValue({ TA: formatted });\n }\n }\n\n // Handle specification selection\n onSpecificationSelected(specNumber: string): void {\n this.selectedSpecification.set(specNumber);\n const unimodData = this.selectedUnimodData();\n\n if (unimodData && unimodData.specifications[specNumber]) {\n const spec = unimodData.specifications[specNumber];\n\n // Ensure NT field is preserved (use the Unimod name)\n const currentNT = this.modificationForm.get('NT')?.value;\n if (!currentNT && unimodData.name) {\n this.modificationForm.patchValue({ NT: unimodData.name });\n }\n\n // Update form fields with specification data\n if (spec['site']) {\n this.modificationForm.patchValue({ TA: spec['site'] });\n }\n if (spec['position']) {\n // Map Unimod position to our dropdown values\n const mappedPosition = this.mapUnimodPosition(spec['position']);\n this.modificationForm.patchValue({ PP: mappedPosition });\n }\n if (spec['classification']) {\n // Map classification to modification type if possible\n const mappedType = this.mapClassificationToType(spec['classification']);\n if (mappedType) {\n this.modificationForm.patchValue({ MT: mappedType });\n }\n }\n }\n }\n\n // Map Unimod position to our dropdown values\n private mapUnimodPosition(unimodPosition: string): string {\n const positionMap: Record<string, string> = {\n 'Anywhere': 'Anywhere',\n 'Protein N-term': 'Protein N-term',\n 'Protein C-term': 'Protein C-term',\n 'Any N-term': 'Any N-term',\n 'Any C-term': 'Any C-term'\n };\n\n return positionMap[unimodPosition] \|\| 'Anywhere';\n }\n\n // Map classification to modification type\n private mapClassificationToType(classification: string): string \| null {\n const classificationMap: Record<string, string> = {\n 'Post-translational': 'Variable',\n 'Chemical derivatization': 'Fixed',\n 'Artefact': 'Variable',\n 'Pre-translational': 'Fixed',\n 'Multiple': 'Variable',\n 'Other': 'Variable'\n };\n\n return classificationMap[classification] \|\| null;\n }\n\n // Get specification display text\n getSpecificationDisplay(spec: UnimodSpecification & { specNumber: string }): string {\n const parts = [];\n if (spec['site']) parts.push(`Site: ${spec['site']}`);\n if (spec['position']) parts.push(`Position: ${spec['position']}`);\n if (spec['classification']) parts.push(`Class: ${spec['classification']}`);\n\n return parts.join(' \| ') \|\| `Specification ${spec.specNumber}`;\n }\n\n // Handle search type change\n onSearchTypeChange(type: 'icontains' \| 'istartswith'): void {\n this.searchType.set(type);\n }\n\n // Update available specifications based on toggle state\n private updateAvailableSpecifications(suggestion: OntologySuggestion): void {\n if (!isUnimodFullData(suggestion)) return;\n\n const allSpecs = OntologyUtils.getUnimodSpecifications(suggestion);\n const activeSpecs = OntologyUtils.getActiveUnimodSpecifications(suggestion);\n \n // Calculate hidden count\n this.hiddenSpecificationCount.set(allSpecs.length - activeSpecs.length);\n \n // Set available specifications based on toggle\n const specsToShow = this.showHiddenSpecifications() ? allSpecs : activeSpecs;\n this.availableSpecifications.set(specsToShow);\n }\n\n // Toggle hidden specifications visibility\n toggleHiddenSpecifications(): void {\n this.showHiddenSpecifications.set(!this.showHiddenSpecifications());\n \n // Update available specifications\n const unimodData = this.selectedUnimodData();\n if (unimodData) {\n // Create a mock suggestion object to pass to updateAvailableSpecifications\n const mockSuggestion: OntologySuggestion = {\n id: '',\n value: '',\n displayName: '',\n ontologyType: OntologyType.UNIMOD,\n fullData: unimodData\n };\n this.updateAvailableSpecifications(mockSuggestion);\n }\n }\n}\n","<form [formGroup]=\"modificationForm\" class=\"modification-input-form\">\n\n <!-- Search Type Selection for Typeahead -->\n @if (templateId \|\| columnId) {\n <div class=\"mb-3\">\n <small class=\"text-muted d-block mb-1\">Search Mode for Name of Term:</small>\n <div class=\"btn-group btn-group-sm\" role=\"group\">\n <button\n type=\"button\"\n class=\"btn\"\n [class]=\"searchType() === 'icontains' ? 'btn-primary' : 'btn-outline-primary'\"\n (click)=\"onSearchTypeChange('icontains')\">\n <i class=\"bi bi-search me-1\"></i>Contains\n </button>\n <button\n type=\"button\"\n class=\"btn\"\n [class]=\"searchType() === 'istartswith' ? 'btn-primary' : 'btn-outline-primary'\"\n (click)=\"onSearchTypeChange('istartswith')\">\n <i class=\"bi bi-arrow-right me-1\"></i>Starts with\n </button>\n </div>\n </div>\n }\n\n <div class=\"row g-3\">\n\n <!-- Name of Term (NT) - Required with Typeahead -->\n <div class=\"col-md-6\">\n <label for=\"NT\" class=\"form-label\">\n Name of Term <span class=\"text-danger\"></span>\n <small class=\"text-muted\">(NT)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"NT\"\n formControlName=\"NT\"\n placeholder=\"e.g., Oxidation, Acetyl, Phospho\"\n [ngbTypeahead]=\"searchModificationTerms\"\n [resultFormatter]=\"formatOntologySuggestion\"\n [inputFormatter]=\"formatOntologySuggestion\"\n (selectItem)=\"onOntologySuggestionSelected($event)\"\n [editable]=\"true\"\n [showHint]=\"true\"\n [focusFirst]=\"false\"\n container=\"body\"\n [class.is-invalid]=\"modificationForm.get('NT')?.invalid && modificationForm.get('NT')?.touched\">\n <div class=\"form-text\">\n @if (templateId \|\| columnId) {\n Typeahead search: {{ searchType() === 'icontains' ? 'Contains' : 'Starts with' }} mode\n } @else {\n Common modifications: Oxidation, Carbamidomethyl, Acetyl\n }\n </div>\n <div class=\"invalid-feedback\">\n Name of Term is required\n </div>\n </div>\n\n <!-- Unimod Specification Selection -->\n @if (showSpecifications() && availableSpecifications().length > 0) {\n <div class=\"col-md-12\">\n <div class=\"mb-3\">\n <div class=\"d-flex justify-content-between align-items-center mb-2\">\n <label class=\"form-label mb-0\">\n Unimod Specifications\n <small class=\"text-muted\">(Select to auto-fill fields)</small>\n </label>\n \n @if (hiddenSpecificationCount() > 0) {\n <div class=\"form-check form-switch\">\n <input \n class=\"form-check-input\" \n type=\"checkbox\" \n id=\"showHiddenSpecs\"\n [checked]=\"showHiddenSpecifications()\"\n (change)=\"toggleHiddenSpecifications()\">\n <label class=\"form-check-label small text-muted\" for=\"showHiddenSpecs\">\n Show {{ hiddenSpecificationCount() }} hidden spec{{ hiddenSpecificationCount() === 1 ? '' : 's' }}\n </label>\n </div>\n }\n </div>\n \n <div class=\"border rounded p-2 bg-body-secondary\">\n <div class=\"mb-2\">\n <small class=\"text-info fw-semibold\">\n <i class=\"bi bi-info-circle me-1\"></i>\n {{ showHiddenSpecifications() ? 'All' : 'Visible' }} specifications for {{ selectedUnimodData()?.name }}\n @if (!showHiddenSpecifications() && hiddenSpecificationCount() > 0) {\n <span class=\"text-muted\">({{ hiddenSpecificationCount() }} hidden)</span>\n }\n </small>\n </div>\n <div class=\"row g-2\">\n @for (spec of availableSpecifications(); track spec.specNumber) {\n <div class=\"col-md-6\">\n <div class=\"form-check\">\n <input\n class=\"form-check-input\"\n type=\"radio\"\n [id]=\"'spec_' + spec.specNumber\"\n [value]=\"spec.specNumber\"\n [checked]=\"selectedSpecification() === spec.specNumber\"\n (change)=\"onSpecificationSelected(spec.specNumber)\">\n <label\n class=\"form-check-label small\"\n [for]=\"'spec_' + spec.specNumber\">\n <div class=\"fw-semibold\">\n Spec {{ spec.specNumber }}\n @if (spec['hidden'] === '1') {\n <span class=\"badge bg-warning text-dark ms-1\" title=\"Hidden specification\">Hidden</span>\n }\n </div>\n <div class=\"text-muted\">{{ getSpecificationDisplay(spec) }}</div>\n </label>\n </div>\n </div>\n }\n </div>\n @if (selectedSpecification()) {\n <div class=\"mt-2 p-2 bg-body border rounded\">\n <small class=\"text-success\">\n <i class=\"bi bi-check-circle me-1\"></i>\n Fields auto-filled from specification {{ selectedSpecification() }}\n </small>\n </div>\n }\n </div>\n </div>\n </div>\n }\n\n <!-- Target Amino Acid (TA) - Required -->\n <div class=\"col-md-6\">\n <label for=\"TA\" class=\"form-label\">\n Target Amino Acid <span class=\"text-danger\"></span>\n <small class=\"text-muted\">(TA)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"TA\"\n formControlName=\"TA\"\n placeholder=\"e.g., M, S,T,Y, C\"\n (input)=\"onTargetAminoAcidChange($event)\"\n [class.is-invalid]=\"modificationForm.get('TA')?.invalid && modificationForm.get('TA')?.touched\">\n <div class=\"form-text\">Single letter amino acid codes, comma-separated</div>\n <div class=\"invalid-feedback\">\n Target amino acid is required\n </div>\n </div>\n\n <!-- Accession (AC) -->\n <div class=\"col-md-6\">\n <label for=\"AC\" class=\"form-label\">\n Accession <small class=\"text-muted\">(AC)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"AC\"\n formControlName=\"AC\"\n placeholder=\"e.g., UNIMOD:35, PSI-MOD:00719\">\n <div class=\"form-text\">UNIMOD or PSI-MOD accession</div>\n </div>\n\n <!-- Modification Type (MT) -->\n <div class=\"col-md-6\">\n <label for=\"MT\" class=\"form-label\">\n Modification Type <small class=\"text-muted\">(MT)</small>\n </label>\n <select class=\"form-select\" id=\"MT\" formControlName=\"MT\">\n <option value=\"\">Select type...</option>\n @for (type of modificationTypes; track type) {\n <option [value]=\"type\">{{ type }}</option>\n }\n </select>\n <div class=\"form-text\">Fixed, Variable, or Annotated</div>\n </div>\n\n <!-- Position (PP) -->\n <div class=\"col-md-6\">\n <label for=\"PP\" class=\"form-label\">\n Position <small class=\"text-muted\">(PP)</small>\n </label>\n <select class=\"form-select\" id=\"PP\" formControlName=\"PP\">\n <option value=\"\">Select position...</option>\n @for (position of positions; track position) {\n <option [value]=\"position\">{{ position }}</option>\n }\n </select>\n <div class=\"form-text\">Where the modification occurs</div>\n </div>\n\n <!-- Chemical Formula (CF) -->\n <div class=\"col-md-6\">\n <label for=\"CF\" class=\"form-label\">\n Chemical Formula <small class=\"text-muted\">(CF)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"CF\"\n formControlName=\"CF\"\n placeholder=\"e.g., H(2)C(2)O\">\n <div class=\"form-text\">Follow UNIMOD format: H(2)C(2)O</div>\n </div>\n\n <!-- Monoisotopic Mass (MM) -->\n <div class=\"col-md-6\">\n <label for=\"MM\" class=\"form-label\">\n Monoisotopic Mass <small class=\"text-muted\">(MM)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"MM\"\n formControlName=\"MM\"\n placeholder=\"e.g., 42.010565\"\n [class.is-invalid]=\"modificationForm.get('MM')?.invalid && modificationForm.get('MM')?.touched\">\n <div class=\"form-text\">Mass shift in Da (5+ decimal places)</div>\n <div class=\"invalid-feedback\">\n Please enter a valid mass (numbers and decimal point only)\n </div>\n </div>\n\n <!-- Target Site (TS) -->\n <div class=\"col-md-6\">\n <label for=\"TS\" class=\"form-label\">\n Target Site <small class=\"text-muted\">(TS)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"TS\"\n formControlName=\"TS\"\n placeholder=\"e.g., N[^P][ST]\">\n <div class=\"form-text\">Regular expression for complex site rules</div>\n </div>\n\n </div>\n\n <!-- Preview -->\n @if (modificationForm.valid && (modificationForm.get('NT')?.value \|\| modificationForm.get('TA')?.value)) {\n <div class=\"mt-3 p-2 bg-body-secondary border rounded\">\n <small class=\"text-muted fw-semibold\">Preview:</small>\n <div class=\"font-monospace small\">{{ value \|\| 'Building...' }}</div>\n </div>\n }\n\n <!-- Validation Summary -->\n @if (modificationForm.invalid && modificationForm.touched) {\n <div class=\"alert alert-warning mt-3\">\n <small>\n <i class=\"bi bi-exclamation-triangle me-1\"></i>\n <strong>Required fields:</strong> Name of Term (NT) and Target Amino Acid (TA) must be filled.\n </small>\n </div>\n }\n</form>\n","import { Component, Input, Output, EventEmitter, OnInit, inject } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { SdrfSyntaxService, SpikedCompound } from '../../services/sdrf-syntax';\n\n@Component({\n selector: 'ccv-sdrf-spiked-compound-input',\n imports: [CommonModule, ReactiveFormsModule],\n templateUrl: './sdrf-spiked-compound-input.html',\n styleUrl: './sdrf-spiked-compound-input.scss'\n})\nexport class SdrfSpikedCompoundInput implements OnInit {\n @Input() value: string = '';\n @Output() valueChange = new EventEmitter<string>();\n\n private fb = inject(FormBuilder);\n private sdrfSyntax = inject(SdrfSyntaxService);\n\n spikedForm!: FormGroup;\n \n // Predefined options\n compoundTypes = ['protein', 'peptide', 'mixture', 'other'];\n\n ngOnInit() {\n this.spikedForm = this.fb.group({\n CT: ['', Validators.required], // Compound type - MANDATORY\n QY: ['', Validators.required], // Quantity - MANDATORY\n SP: [''], // Species - Optional\n PS: [''], // Peptide sequence - For peptides\n AC: [''], // Uniprot Accession - For proteins\n CN: [''], // Compound name - Optional\n CV: [''], // Compound vendor - Optional\n CS: [''], // Compound specification URI - Optional\n CF: [''] // Compound formula - Optional\n });\n\n // Parse initial value\n if (this.value) {\n this.parseAndSetValue(this.value);\n }\n\n // Subscribe to form changes\n this.spikedForm.valueChanges.subscribe(() => {\n this.updateValue();\n });\n }\n\n private parseAndSetValue(value: string) {\n try {\n const parsed = this.sdrfSyntax.parseValue('spiked_compound', value) as SpikedCompound;\n this.spikedForm.patchValue(parsed);\n } catch (error) {\n console.warn('Could not parse spiked compound value:', value);\n }\n }\n\n // Helper method to ensure we get string values from form controls\n private getStringValue(value: any): string {\n if (typeof value === 'string') {\n return value.trim();\n }\n \n // Handle objects from typeahead selection (OntologySuggestion)\n if (value && typeof value === 'object') {\n // For ontology suggestions, use the value property\n if (value.value) return value.value;\n if (value.name) return value.name;\n }\n \n // Fallback to string conversion\n return value ? String(value).trim() : '';\n }\n\n private updateValue() {\n const formValue = this.spikedForm.value;\n \n // Only emit if we have both required fields\n if (formValue.CT && formValue.QY) {\n // Filter out empty values and convert to strings\n const cleanedValue: SpikedCompound = {};\n Object.keys(formValue).forEach(key => {\n const stringValue = this.getStringValue(formValue[key]);\n if (stringValue) {\n cleanedValue[key as keyof SpikedCompound] = stringValue;\n }\n });\n\n const formatted = this.sdrfSyntax.formatValue('spiked_compound', cleanedValue);\n this.valueChange.emit(formatted);\n } else if (!formValue.CT && !formValue.QY) {\n // If both required fields are empty, emit empty string\n this.valueChange.emit('');\n }\n }\n\n get showProteinFields(): boolean {\n return this.spikedForm.get('CT')?.value === 'protein';\n }\n\n get showPeptideFields(): boolean {\n return this.spikedForm.get('CT')?.value === 'peptide';\n }\n}\n","<form [formGroup]=\"spikedForm\" class=\"spiked-compound-input-form\">\n <div class=\"row g-3\">\n \n <!-- Compound Type (CT) - Required -->\n <div class=\"col-md-6\">\n <label for=\"CT\" class=\"form-label\">\n Compound Type <span class=\"text-danger\"></span>\n <small class=\"text-muted\">(CT)</small>\n </label>\n <select class=\"form-select\" id=\"CT\" formControlName=\"CT\"\n [class.is-invalid]=\"spikedForm.get('CT')?.invalid && spikedForm.get('CT')?.touched\">\n <option value=\"\">Select compound type...</option>\n @for (type of compoundTypes; track type) {\n <option [value]=\"type\">{{ type }}</option>\n }\n </select>\n <div class=\"form-text\">Type of spiked compound</div>\n <div class=\"invalid-feedback\">\n Compound type is required\n </div>\n </div>\n\n <!-- Quantity (QY) - Required -->\n <div class=\"col-md-6\">\n <label for=\"QY\" class=\"form-label\">\n Quantity <span class=\"text-danger\"></span>\n <small class=\"text-muted\">(QY)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"QY\"\n formControlName=\"QY\"\n placeholder=\"e.g., 10 fmol, 50 ng\"\n [class.is-invalid]=\"spikedForm.get('QY')?.invalid && spikedForm.get('QY')?.touched\">\n <div class=\"form-text\">Quantity with units (molar or mass)</div>\n <div class=\"invalid-feedback\">\n Quantity is required\n </div>\n </div>\n\n <!-- Species (SP) -->\n <div class=\"col-md-6\">\n <label for=\"SP\" class=\"form-label\">\n Species <small class=\"text-muted\">(SP)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"SP\"\n formControlName=\"SP\"\n placeholder=\"e.g., homo sapiens\">\n <div class=\"form-text\">Species of origin</div>\n </div>\n\n <!-- Compound Name (CN) -->\n <div class=\"col-md-6\">\n <label for=\"CN\" class=\"form-label\">\n Compound Name <small class=\"text-muted\">(CN)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"CN\"\n formControlName=\"CN\"\n placeholder=\"e.g., Myoglobin\">\n <div class=\"form-text\">Name of the compound</div>\n </div>\n\n <!-- Protein-specific fields -->\n @if (showProteinFields) {\n <div class=\"col-md-12\">\n <label for=\"AC\" class=\"form-label\">\n Uniprot Accession <small class=\"text-muted\">(AC)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"AC\"\n formControlName=\"AC\"\n placeholder=\"e.g., P68871\">\n <div class=\"form-text\">Uniprot accession for protein compounds</div>\n </div>\n }\n\n <!-- Peptide-specific fields -->\n @if (showPeptideFields) {\n <div class=\"col-md-12\">\n <label for=\"PS\" class=\"form-label\">\n Peptide Sequence <small class=\"text-muted\">(PS)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"PS\"\n formControlName=\"PS\"\n placeholder=\"e.g., PEPTIDESEQ\">\n <div class=\"form-text\">Peptide sequence for peptide compounds</div>\n </div>\n }\n\n <!-- Compound Vendor (CV) -->\n <div class=\"col-md-6\">\n <label for=\"CV\" class=\"form-label\">\n Compound Vendor <small class=\"text-muted\">(CV)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"CV\"\n formControlName=\"CV\"\n placeholder=\"e.g., Sigma-Aldrich\">\n <div class=\"form-text\">Vendor or supplier name</div>\n </div>\n\n <!-- Compound Formula (CF) -->\n <div class=\"col-md-6\">\n <label for=\"CF\" class=\"form-label\">\n Compound Formula <small class=\"text-muted\">(CF)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"CF\"\n formControlName=\"CF\"\n placeholder=\"e.g., C8H14N4O2\">\n <div class=\"form-text\">Chemical formula</div>\n </div>\n\n <!-- Compound Specification URI (CS) -->\n <div class=\"col-md-12\">\n <label for=\"CS\" class=\"form-label\">\n Compound Specification URI <small class=\"text-muted\">(CS)</small>\n </label>\n <input \n type=\"url\" \n class=\"form-control\" \n id=\"CS\"\n formControlName=\"CS\"\n placeholder=\"https://example.com/compound-spec\">\n <div class=\"form-text\">URI to compound specification or documentation</div>\n </div>\n\n </div>\n\n <!-- Preview -->\n @if (spikedForm.valid && (spikedForm.get('CT')?.value && spikedForm.get('QY')?.value)) {\n <div class=\"mt-3 p-2 bg-body-secondary border rounded\">\n <small class=\"text-muted fw-semibold\">Preview:</small>\n <div class=\"font-monospace small\">{{ value \|\| 'Building...' }}</div>\n </div>\n }\n\n <!-- Validation Summary -->\n @if (spikedForm.invalid && spikedForm.touched) {\n <div class=\"alert alert-warning mt-3\">\n <small>\n <i class=\"bi bi-exclamation-triangle me-1\"></i>\n <strong>Required fields:</strong> Compound Type (CT) and Quantity (QY) must be filled.\n </small>\n </div>\n }\n</form>\n","import { Component, Input, Output, EventEmitter, OnInit, inject, signal } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbTypeahead, NgbModule } from '@ng-bootstrap/ng-bootstrap';\nimport { Observable, OperatorFunction, debounceTime, distinctUntilChanged, filter, map, switchMap, of, catchError } from 'rxjs';\nimport { SdrfSyntaxService, CleavageAgentDetails } from '../../services/sdrf-syntax';\nimport { OntologySuggestion } from '../../models';\nimport { MetadataColumnService, MetadataColumnTemplateService } from '../../services';\n\n@Component({\n selector: 'ccv-sdrf-cleavage-input',\n imports: [CommonModule, ReactiveFormsModule, NgbTypeahead, NgbModule],\n templateUrl: './sdrf-cleavage-input.html',\n styleUrl: './sdrf-cleavage-input.scss'\n})\nexport class SdrfCleavageInput implements OnInit {\n @Input() value: string = '';\n @Input() templateId: number \| null = null; // Template ID for ontology suggestions\n @Input() columnId: number \| null = null; // Column ID for ontology suggestions (actual metadata column)\n @Output() valueChange = new EventEmitter<string>();\n\n // Search type for typeahead - internal signal\n searchType = signal<'icontains' \| 'istartswith'>('icontains');\n\n private fb = inject(FormBuilder);\n private sdrfSyntax = inject(SdrfSyntaxService);\n private metadataColumnService = inject(MetadataColumnService);\n private metadataColumnTemplateService = inject(MetadataColumnTemplateService);\n\n cleavageForm!: FormGroup;\n\n ngOnInit() {\n this.cleavageForm = this.fb.group({\n NT: ['', Validators.required], // Name of Term - will use ontology typeahead from parent\n AC: [''], // Accession\n CS: [''] // Cleavage Site pattern\n });\n\n // Parse initial value\n if (this.value) {\n this.parseAndSetValue(this.value);\n }\n\n // Subscribe to form changes\n this.cleavageForm.valueChanges.subscribe(() => {\n this.updateValue();\n });\n }\n\n private parseAndSetValue(value: string) {\n try {\n const parsed = this.sdrfSyntax.parseValue('cleavage', value) as CleavageAgentDetails;\n this.cleavageForm.patchValue(parsed);\n } catch (error) {\n console.warn('Could not parse cleavage agent value:', value);\n }\n }\n\n // Helper method to ensure we get string values from form controls\n private getStringValue(value: any): string {\n if (typeof value === 'string') {\n return value.trim();\n }\n \n // Handle objects from typeahead selection (OntologySuggestion)\n if (value && typeof value === 'object') {\n // For cleavage agents: display_name for NT, value for AC\n if (value.displayName) return value.displayName;\n if (value.value) return value.value;\n if (value.name) return value.name;\n }\n \n // Fallback to string conversion\n return value ? String(value).trim() : '';\n }\n\n private updateValue() {\n const formValue = this.cleavageForm.value;\n\n // Only emit if we have required field\n if (formValue.NT) {\n // Filter out empty values and convert to strings\n const cleanedValue: CleavageAgentDetails = {};\n Object.keys(formValue).forEach(key => {\n const stringValue = this.getStringValue(formValue[key]);\n if (stringValue) {\n cleanedValue[key as keyof CleavageAgentDetails] = stringValue;\n }\n });\n\n const formatted = this.sdrfSyntax.formatValue('cleavage', cleanedValue);\n this.valueChange.emit(formatted);\n } else if (!formValue.NT) {\n // If required field is empty, emit empty string\n this.valueChange.emit('');\n }\n }\n\n // Typeahead for NT field (Name of Term) - using ontology suggestions from API\n searchCleavageTerms: OperatorFunction<string, readonly OntologySuggestion[]> = (text$: Observable<string>) =>\n text$.pipe(\n debounceTime(200),\n distinctUntilChanged(),\n filter(term => term.length >= 2),\n switchMap(term => {\n // Use column ID first if available (for actual metadata columns), otherwise template ID (for templates/favorites)\n if (this.columnId) {\n return this.metadataColumnService.getOntologySuggestions({\n columnId: this.columnId,\n search: term,\n limit: 10,\n searchType: this.searchType()\n }).pipe(\n map(response => response.suggestions \|\| []),\n catchError(error => {\n console.warn(`Failed to get ontology suggestions for column ${this.columnId}:`, error);\n return of([]);\n })\n );\n } else if (this.templateId) {\n return this.metadataColumnTemplateService.getOntologySuggestions({\n templateId: this.templateId,\n search: term,\n limit: 10,\n searchType: this.searchType()\n }).pipe(\n map(response => response.suggestions \|\| []),\n catchError(error => {\n console.warn(`Failed to get ontology suggestions for template ${this.templateId}:`, error);\n return of([]);\n })\n );\n } else {\n // No ID available, return empty suggestions\n return of([]);\n }\n })\n );\n\n // Formatter for ontology suggestions\n formatOntologySuggestion = (suggestion: OntologySuggestion): string => {\n return suggestion.displayName \|\| suggestion.value;\n };\n\n // Handle ontology suggestion selection\n onOntologySuggestionSelected = (event: any): void => {\n const suggestion: OntologySuggestion = event.item;\n if (suggestion) {\n // Set the NT field value\n this.cleavageForm.patchValue({ NT: suggestion.value });\n\n // Auto-fill AC field if available (use the ID as accession)\n if (suggestion.id) {\n this.cleavageForm.patchValue({ AC: suggestion.id });\n }\n }\n };\n\n // Handle search type change\n onSearchTypeChange(type: 'icontains' \| 'istartswith'): void {\n this.searchType.set(type);\n }\n}\n","<form [formGroup]=\"cleavageForm\" class=\"cleavage-input-form\">\n\n <!-- Search Type Selection for Typeahead -->\n @if (templateId \|\| columnId) {\n <div class=\"mb-3\">\n <small class=\"text-muted d-block mb-1\">Search Mode for Name of Term:</small>\n <div class=\"btn-group btn-group-sm\" role=\"group\">\n <button\n type=\"button\"\n class=\"btn\"\n [class]=\"searchType() === 'icontains' ? 'btn-primary' : 'btn-outline-primary'\"\n (click)=\"onSearchTypeChange('icontains')\">\n <i class=\"bi bi-search me-1\"></i>Contains\n </button>\n <button\n type=\"button\"\n class=\"btn\"\n [class]=\"searchType() === 'istartswith' ? 'btn-primary' : 'btn-outline-primary'\"\n (click)=\"onSearchTypeChange('istartswith')\">\n <i class=\"bi bi-arrow-right me-1\"></i>Starts with\n </button>\n </div>\n </div>\n }\n\n <div class=\"row g-3\">\n\n <!-- Name of Term (NT) - Required -->\n <div class=\"col-md-6\">\n <label for=\"NT\" class=\"form-label\">\n Name of Term <span class=\"text-danger\"></span>\n <small class=\"text-muted\">(NT)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"NT\"\n formControlName=\"NT\"\n placeholder=\"e.g., Trypsin, Chymotrypsin\"\n [ngbTypeahead]=\"searchCleavageTerms\"\n [resultFormatter]=\"formatOntologySuggestion\"\n [inputFormatter]=\"formatOntologySuggestion\"\n (selectItem)=\"onOntologySuggestionSelected($event)\"\n [editable]=\"true\"\n [showHint]=\"true\"\n [focusFirst]=\"false\"\n container=\"body\"\n [class.is-invalid]=\"cleavageForm.get('NT')?.invalid && cleavageForm.get('NT')?.touched\">\n <div class=\"form-text\">\n @if (templateId \|\| columnId) {\n Typeahead search: {{ searchType() === 'icontains' ? 'Contains' : 'Starts with' }} mode\n } @else {\n Cleavage agent name (uses ontology typeahead when available)\n }\n </div>\n <div class=\"invalid-feedback\">\n Name of Term is required\n </div>\n </div>\n\n <!-- Accession (AC) -->\n <div class=\"col-md-6\">\n <label for=\"AC\" class=\"form-label\">\n Accession <small class=\"text-muted\">(AC)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"AC\"\n formControlName=\"AC\"\n placeholder=\"e.g., PSI-MS:1001251\">\n <div class=\"form-text\">PSI-MS or other ontology accession</div>\n </div>\n\n <!-- Cleavage Site (CS) -->\n <div class=\"col-md-12\">\n <label for=\"CS\" class=\"form-label\">\n Cleavage Site <small class=\"text-muted\">(CS)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"CS\"\n formControlName=\"CS\"\n placeholder=\"e.g., (?<=[KR])(?![P])\">\n <div class=\"form-text\">Regular expression pattern for cleavage site specificity</div>\n </div>\n\n </div>\n\n <!-- Preview -->\n @if (cleavageForm.valid && cleavageForm.get('NT')?.value) {\n <div class=\"mt-3 p-2 bg-body-secondary border rounded\">\n <small class=\"text-muted fw-semibold\">Preview:</small>\n <div class=\"font-monospace small\">{{ value \|\| 'Building...' }}</div>\n </div>\n }\n\n <!-- Validation Summary -->\n @if (cleavageForm.invalid && cleavageForm.touched) {\n <div class=\"alert alert-warning mt-3\">\n <small>\n <i class=\"bi bi-exclamation-triangle me-1\"></i>\n <strong>Required field:</strong> Name of Term (NT) must be filled.\n </small>\n </div>\n }\n</form>\n","import { Component, Input, Output, EventEmitter, OnInit, signal, inject } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbActiveModal, NgbModule, NgbNavModule } from '@ng-bootstrap/ng-bootstrap';\nimport { Observable, of, catchError, debounceTime, distinctUntilChanged, tap, switchMap, map } from 'rxjs';\nimport { MetadataColumn, OntologySuggestion, FavouriteMetadataOption, FavouriteMetadataOptionCreateRequest, OntologyType } from '../../models';\nimport { FavouriteMetadataOptionService, MetadataColumnService, MetadataColumnTemplateService } from '../../services';\nimport { AuthService, User, LabGroupService } from '@noatgnu/cupcake-core';\nimport { SdrfSyntaxService, SyntaxType } from '../../services/sdrf-syntax';\nimport { SdrfAgeInput, SdrfModificationInput, SdrfCleavageInput, SdrfSpikedCompoundInput } from '../';\n\n\nexport interface MetadataValueEditConfig {\n columnId?: number;\n columnName: string;\n columnType: string;\n ontologyType?: string;\n enableTypeahead?: boolean;\n currentValue?: string;\n context: 'template' \| 'table' \| 'pool' \| 'favorite_management';\n templateId?: number;\n tableId?: number;\n poolId?: number;\n customOntologyFilters?: Record<string, any>;\n enableMultiSampleEdit?: boolean;\n sampleData?: { index: number; value: string; sourceName?: string }[];\n maxSampleCount?: number;\n}\n\n@Component({\n selector: 'ccv-metadata-value-edit-modal',\n standalone: true,\n imports: [\n CommonModule,\n ReactiveFormsModule,\n NgbModule,\n NgbNavModule,\n SdrfAgeInput,\n SdrfModificationInput,\n SdrfCleavageInput,\n SdrfSpikedCompoundInput\n ],\n templateUrl: './metadata-value-edit-modal.html',\n styleUrl: './metadata-value-edit-modal.scss'\n})\nexport class MetadataValueEditModal implements OnInit {\n @Input() config!: MetadataValueEditConfig;\n @Output() valueSaved = new EventEmitter<string \| { value: string; sampleIndices: number[] }>();\n\n editForm: FormGroup;\n isLoading = signal(false);\n isLoadingSuggestions = signal(false);\n searchType = signal<'icontains' \| 'istartswith'>('icontains');\n\n isLoadingFavorites = signal(false);\n userFavorites = signal<FavouriteMetadataOption[]>([]);\n labGroupFavorites = signal<FavouriteMetadataOption[]>([]);\n globalFavorites = signal<FavouriteMetadataOption[]>([]);\n selectedFavorite = signal<FavouriteMetadataOption \| null>(null);\n\n currentUser = signal<User \| null>(null);\n userLabGroups = signal<number[]>([]);\n\n activeFavoritesTab: 'user' \| 'lab_group' \| 'global' = 'user';\n\n private sdrfSyntaxService = inject(SdrfSyntaxService);\n specialSyntaxType = signal<SyntaxType \| null>(null);\n showSpecialInput = signal(false);\n specialInputValue = signal('');\n\n selectedSampleIndices = signal<Set<number>>(new Set());\n showSamplePanel = signal(false);\n\n constructor(\n private fb: FormBuilder,\n private activeModal: NgbActiveModal,\n private authService: AuthService,\n private favouriteMetadataOptionService: FavouriteMetadataOptionService,\n private metadataColumnService: MetadataColumnService,\n private metadataColumnTemplateService: MetadataColumnTemplateService,\n private labGroupService: LabGroupService\n ) {\n this.editForm = this.fb.group({\n value: ['', [Validators.maxLength(500)]]\n });\n }\n\n ngOnInit() {\n\n const syntaxType = this.sdrfSyntaxService.detectSpecialSyntax(\n this.config.columnName,\n this.config.columnType\n );\n\n if (syntaxType) {\n this.specialSyntaxType.set(syntaxType);\n this.showSpecialInput.set(true);\n this.specialInputValue.set(this.config?.currentValue \|\| '');\n }\n\n if (this.config?.currentValue) {\n this.editForm.patchValue({\n value: this.config.currentValue\n });\n }\n\n this.currentUser.set(this.authService.getCurrentUser());\n\n if (this.currentUser()) {\n this.loadUserLabGroups();\n }\n\n this.loadFavoriteOptions();\n\n\n if (this.config?.enableMultiSampleEdit && this.config?.sampleData) {\n this.showSamplePanel.set(true);\n console.log('Multi-sample editing enabled with', this.config.sampleData.length, 'samples');\n } else {\n console.log('Multi-sample editing not enabled:', {\n enableMultiSampleEdit: this.config?.enableMultiSampleEdit,\n hasSampleData: !!this.config?.sampleData,\n sampleDataLength: this.config?.sampleData?.length\n });\n }\n\n this.editForm.get('value')?.valueChanges.subscribe((newValue) => {\n const selected = this.selectedFavorite();\n if (selected && selected.value !== newValue) {\n this.selectedFavorite.set(null);\n }\n });\n }\n\n\n onCancel() {\n this.activeModal.dismiss();\n }\n\n onClose() {\n this.isLoading.set(false);\n this.activeModal.close();\n }\n\n get title(): string {\n return `Edit ${this.config?.columnName \|\| 'Metadata Value'}`;\n }\n\n get hasOntologyType(): boolean {\n return !!(this.config?.ontologyType && this.config.ontologyType.length > 0 && this.config.enableTypeahead);\n }\n\n get ontologyTypeLabel(): string {\n return this.config?.ontologyType \|\| '';\n }\n\n get isFromFavoriteManagement(): boolean {\n return this.config?.context === 'favorite_management';\n }\n\n // Ontology autocomplete methods\n searchOntology = (text$: Observable<string>): Observable<OntologySuggestion[]> => {\n return text$.pipe(\n debounceTime(200),\n distinctUntilChanged(),\n tap(() => this.isLoadingSuggestions.set(true)),\n switchMap(term => {\n if (term.length < 2 \|\| !this.hasOntologyType) {\n this.isLoadingSuggestions.set(false);\n return of([]);\n }\n\n if (this.config.context === 'table' && this.config.columnId) {\n return this.metadataColumnService.getOntologySuggestions({\n columnId: this.config.columnId,\n search: term,\n limit: 10,\n searchType: this.searchType()\n }).pipe(\n switchMap(response => of(response.suggestions \|\| [])),\n catchError(() => of([])),\n tap(() => this.isLoadingSuggestions.set(false))\n );\n } else if ((this.config.context === 'template' \|\| this.config.context === 'favorite_management') && this.config.templateId) {\n return this.metadataColumnTemplateService.getOntologySuggestions({\n templateId: this.config.templateId,\n search: term,\n limit: 10,\n searchType: this.searchType()\n }).pipe(\n map(response => response.suggestions \|\| []),\n catchError(error => {\n console.error('Error getting ontology suggestions:', error);\n return of([]);\n }),\n tap(() => this.isLoadingSuggestions.set(false))\n );\n } else {\n this.isLoadingSuggestions.set(false);\n return of([]);\n }\n })\n );\n };\n\n formatSuggestion = (suggestion: OntologySuggestion): string => {\n return suggestion.displayName \|\| suggestion.value;\n };\n\n inputFormatter = (suggestion: OntologySuggestion): string => {\n if (suggestion && suggestion.ontologyType === OntologyType.MS_UNIQUE_VOCABULARIES && suggestion.fullData && suggestion.fullData.name) {\n if (suggestion.fullData.accession) {\n return `NT=${suggestion.fullData.name};AC=${suggestion.fullData.accession}`;\n } else {\n return suggestion.fullData.name;\n }\n }\n\n // For other ontology types, use regular value\n return suggestion.displayName \|\| suggestion.value \|\| String(suggestion);\n };\n\n onSuggestionSelected = (event: any): void => {\n if (event.item) {\n const suggestion = event.item;\n let displayValue: string;\n\n // Extract the proper display value based on suggestion type\n if (suggestion.fullData && suggestion.fullData.name) {\n // For ontology suggestions with fullData, format according to SDRF syntax\n if (suggestion.fullData.accession) {\n // Use SDRF syntax: NT={name};AC={accession}\n displayValue = `NT=${suggestion.fullData.name};AC=${suggestion.fullData.accession}`;\n } else {\n // Only name available, use just the name\n displayValue = suggestion.fullData.name;\n }\n } else if (suggestion.displayName) {\n // For standard ontology suggestions, use displayName\n displayValue = suggestion.displayName;\n } else if (suggestion.value) {\n // Fallback to basic value\n displayValue = suggestion.value;\n } else {\n // Last resort\n displayValue = String(suggestion);\n }\n\n this.editForm.get('value')?.setValue(displayValue);\n this.editForm.get('value')?.markAsTouched();\n }\n };\n\n onSearchTypeChange(type: 'icontains' \| 'istartswith'): void {\n this.searchType.set(type);\n }\n\n clearValue(): void {\n this.editForm.get('value')?.setValue('');\n this.editForm.get('value')?.markAsTouched();\n this.selectedFavorite.set(null); // Clear selected favorite when manually clearing\n }\n\n // Favorite options methods\n loadFavoriteOptions(): void {\n if (!this.config?.columnName \|\| !this.config?.columnType) return;\n\n this.isLoadingFavorites.set(true);\n\n // Build base query parameters for column name\n const baseQueryParams = {\n name: this.config.columnName,\n limit: 10\n };\n\n // Load user favorites\n const currentUser = this.currentUser();\n if (currentUser?.id) {\n this.favouriteMetadataOptionService.getFavouriteMetadataOptions({\n ...baseQueryParams,\n userId: currentUser.id\n }).subscribe({\n next: (response) => {\n this.userFavorites.set(response.results);\n },\n error: () => this.userFavorites.set([])\n });\n }\n\n // Load lab group favorites - load for first lab group if user has any\n const userLabGroups = this.userLabGroups();\n if (userLabGroups.length > 0) {\n this.favouriteMetadataOptionService.getFavouriteMetadataOptions({\n ...baseQueryParams,\n labGroupId: userLabGroups[0] // Use first lab group for now\n }).subscribe({\n next: (response) => {\n this.labGroupFavorites.set(response.results);\n },\n error: () => this.labGroupFavorites.set([])\n });\n } else {\n this.labGroupFavorites.set([]);\n }\n\n // Load global favorites\n this.favouriteMetadataOptionService.getFavouriteMetadataOptions({\n ...baseQueryParams,\n isGlobal: true\n }).subscribe({\n next: (response) => {\n this.globalFavorites.set(response.results);\n this.isLoadingFavorites.set(false);\n // Set initial active tab based on available favorites\n this.setInitialActiveFavoritesTab();\n },\n error: () => {\n this.globalFavorites.set([]);\n this.isLoadingFavorites.set(false);\n // Set initial active tab based on available favorites\n this.setInitialActiveFavoritesTab();\n }\n });\n }\n\n selectFavorite(favorite: FavouriteMetadataOption): void {\n const favoriteValue = favorite.value \|\| '';\n\n // Set the form value\n this.editForm.get('value')?.setValue(favoriteValue);\n this.editForm.get('value')?.markAsTouched();\n this.selectedFavorite.set(favorite);\n\n if (this.showSpecialInput() && this.specialSyntaxType()) {\n this.specialInputValue.set(favoriteValue);\n }\n\n if (favorite.columnTemplate && favorite.columnTemplate !== this.config.templateId) {\n this.config.templateId = favorite.columnTemplate;\n }\n\n if (this.hasCustomDisplayValue(favorite)) {\n console.log(`Selected \"${favorite.displayValue}\" (value: ${favorite.value})`);\n }\n }\n\n onFavoriteSelected(event: Event, favoritesList: FavouriteMetadataOption[]): void {\n const selectElement = event.target as HTMLSelectElement;\n const favoriteId = selectElement.value;\n\n if (!favoriteId) {\n return; // No selection made\n }\n\n const selectedFavorite = favoritesList.find(fav => fav.id?.toString() === favoriteId);\n if (selectedFavorite) {\n this.selectFavorite(selectedFavorite);\n }\n }\n\n setActiveFavoritesTab(tab: 'user' \| 'lab_group' \| 'global'): void {\n this.activeFavoritesTab = tab;\n }\n\n setInitialActiveFavoritesTab(): void {\n // Set the first available tab as active\n if (this.userFavorites().length > 0) {\n this.activeFavoritesTab = 'user';\n } else if (this.labGroupFavorites().length > 0) {\n this.activeFavoritesTab = 'lab_group';\n } else if (this.globalFavorites().length > 0) {\n this.activeFavoritesTab = 'global';\n }\n }\n\n addToFavorites(scope: 'user' \| 'lab_group' \| 'global' = 'user'): void {\n const value = this.editForm.get('value')?.value;\n if (!value \|\| !this.config?.columnName \|\| !this.config?.columnType) return;\n\n const newFavorite: FavouriteMetadataOptionCreateRequest = {\n name: this.config.columnName,\n type: this.config.columnType,\n columnTemplate: this.config.templateId \|\| undefined,\n value: value,\n displayValue: value,\n isGlobal: scope === 'global',\n user: scope === 'user' ? this.currentUser()?.id : undefined,\n labGroup: scope === 'lab_group' ? this.userLabGroups()[0] \|\| undefined : undefined\n };\n\n this.favouriteMetadataOptionService.createFavouriteMetadataOption(newFavorite).subscribe({\n next: (created) => {\n // Add to appropriate list\n if (scope === 'user') {\n this.userFavorites.set([...this.userFavorites(), created]);\n } else if (scope === 'lab_group') {\n this.labGroupFavorites.set([...this.labGroupFavorites(), created]);\n } else {\n this.globalFavorites.set([...this.globalFavorites(), created]);\n }\n },\n error: (error) => {\n console.error('Error adding to favorites:', error);\n }\n });\n }\n\n get hasFavorites(): boolean {\n return this.userFavorites().length > 0 \|\|\n this.labGroupFavorites().length > 0 \|\|\n this.globalFavorites().length > 0;\n }\n\n getFavoriteDisplayValue(favorite: FavouriteMetadataOption): string {\n return favorite.displayValue \|\| favorite.value \|\| '';\n }\n\n getFavoriteTooltip(favorite: FavouriteMetadataOption): string {\n const displayValue = favorite.displayValue \|\| favorite.value \|\| '';\n const actualValue = favorite.value \|\| '';\n\n if (favorite.displayValue && favorite.displayValue !== actualValue) {\n return `${displayValue}\\n\\nActual value: ${actualValue}`;\n }\n\n return displayValue;\n }\n\n hasCustomDisplayValue(favorite: FavouriteMetadataOption): boolean {\n return !!(favorite.displayValue &&\n favorite.displayValue !== favorite.value &&\n favorite.displayValue.trim() !== '');\n }\n\n getSelectedFavoriteInfo(): string {\n const selected = this.selectedFavorite();\n const currentValue = this.editForm.get('value')?.value;\n\n if (!selected \|\| !currentValue \|\| selected.value !== currentValue) {\n return '';\n }\n\n if (this.hasCustomDisplayValue(selected)) {\n return `Selected from favorite: \"${selected.displayValue}\"`;\n }\n\n return '';\n }\n\n loadUserLabGroups(): void {\n // Load user's lab groups\n this.labGroupService.getMyLabGroups({ limit: 10 }).subscribe({\n next: (response) => {\n const labGroupIds = response.results.map(group => group.id!);\n this.userLabGroups.set(labGroupIds);\n },\n error: (error) => {\n console.error('Error loading user lab groups:', error);\n this.userLabGroups.set([]);\n }\n });\n }\n\n // SDRF Special Syntax Methods\n onSpecialInputChange(value: string): void {\n this.specialInputValue.set(value);\n this.editForm.patchValue({ value });\n }\n\n toggleSpecialInput(): void {\n this.showSpecialInput.set(!this.showSpecialInput());\n\n if (!this.showSpecialInput()) {\n // Switching to normal input, sync the current value\n this.editForm.patchValue({ value: this.specialInputValue() });\n }\n }\n\n getSpecialInputTitle(): string {\n const syntaxType = this.specialSyntaxType();\n switch (syntaxType) {\n case 'age': return 'Age Format Editor';\n case 'modification': return 'Modification Parameters Editor';\n case 'cleavage': return 'Cleavage Agent Editor';\n case 'spiked_compound': return 'Spiked Compound Editor';\n default: return 'Special Format Editor';\n }\n }\n\n // Multi-sample editing methods\n get hasMultiSampleEdit(): boolean {\n return !!(this.config?.enableMultiSampleEdit && this.config?.sampleData && this.config.sampleData.length > 0);\n }\n\n get sampleData(): { index: number; value: string; sourceName?: string }[] {\n return this.config?.sampleData \|\| [];\n }\n\n toggleSampleSelection(sampleIndex: number): void {\n const current = new Set(this.selectedSampleIndices());\n if (current.has(sampleIndex)) {\n current.delete(sampleIndex);\n } else {\n current.add(sampleIndex);\n }\n this.selectedSampleIndices.set(current);\n }\n\n selectAllSamples(): void {\n const allIndices = new Set(this.sampleData.map(s => s.index));\n this.selectedSampleIndices.set(allIndices);\n }\n\n clearSampleSelection(): void {\n this.selectedSampleIndices.set(new Set());\n }\n\n get selectedSampleCount(): number {\n return this.selectedSampleIndices().size;\n }\n\n get totalSampleCount(): number {\n return this.sampleData.length;\n }\n\n isSampleSelected(sampleIndex: number): boolean {\n return this.selectedSampleIndices().has(sampleIndex);\n }\n\n // Override the onSubmit method to handle multi-sample editing\n onSubmit(): void {\n if (this.editForm.valid) {\n this.isLoading.set(true);\n const rawValue = this.editForm.get('value')?.value \|\| '';\n\n // If the form contains an object (ontology suggestion), format it properly\n let value: string;\n if (typeof rawValue === 'object' && rawValue !== null) {\n // For MS Unique Vocabularies, use SDRF formatting\n if (rawValue.ontologyType === OntologyType.MS_UNIQUE_VOCABULARIES && rawValue.fullData && rawValue.fullData.name) {\n if (rawValue.fullData.accession) {\n value = `NT=${rawValue.fullData.name};AC=${rawValue.fullData.accession}`;\n } else {\n value = rawValue.fullData.name;\n }\n } else {\n // For other ontology types, use the regular value\n value = rawValue.displayName \|\| rawValue.value \|\| String(rawValue);\n }\n } else {\n value = String(rawValue);\n }\n\n\n // If multi-sample editing is enabled and samples are selected, include the sample indices\n if (this.hasMultiSampleEdit && this.selectedSampleCount > 0) {\n const selectedIndices = Array.from(this.selectedSampleIndices());\n this.valueSaved.emit({ value, sampleIndices: selectedIndices });\n } else {\n this.valueSaved.emit(value);\n }\n }\n }\n}\n","<div class=\"modal-header\">\n <h4 class=\"modal-title\">\n <i class=\"bi bi-pencil-square me-2\"></i>{{ title }}\n </h4>\n <button type=\"button\" class=\"btn-close\" (click)=\"onCancel()\"></button>\n</div>\n\n<div class=\"modal-body\">\n <div class=\"row\">\n <!-- Main Content -->\n <div [class]=\"hasMultiSampleEdit ? 'col-md-8' : 'col-12'\">\n <form [formGroup]=\"editForm\" (ngSubmit)=\"onSubmit()\">\n\n <!-- Column Information -->\n <div class=\"mb-3\">\n <div class=\"row\">\n <div class=\"col-md-6\">\n <small class=\"text-muted\">Column Name:</small>\n <div class=\"fw-semibold\">{{ config.columnName }}</div>\n </div>\n <div class=\"col-md-6\">\n <small class=\"text-muted\">Column Type:</small>\n <div><span class=\"badge bg-light text-dark\">{{ config.columnType }}</span></div>\n </div>\n </div>\n @if (hasOntologyType) {\n <div class=\"mt-2\">\n <small class=\"text-muted\">Ontology Type:</small>\n <div><span class=\"badge bg-info\">{{ ontologyTypeLabel }}</span></div>\n </div>\n }\n </div>\n\n <hr class=\"mb-4\">\n\n <!-- Favorite Options Section -->\n @if (hasFavorites && !isLoadingFavorites()) {\n <div class=\"mb-4\">\n <h6 class=\"text-muted mb-3\">\n <i class=\"bi bi-heart-fill me-2 text-danger\"></i>Recommended Values\n </h6>\n\n <!-- Favorites Navigation Tabs -->\n <ul ngbNav #favoritesNav=\"ngbNav\" [(activeId)]=\"activeFavoritesTab\" class=\"nav-tabs\">\n @if (userFavorites().length > 0) {\n <li [ngbNavItem]=\"'user'\">\n <button ngbNavLink>\n <i class=\"bi bi-person-fill me-1\"></i>Your Favorites\n <span class=\"badge bg-primary ms-1\">{{ userFavorites().length }}</span>\n </button>\n <ng-template ngbNavContent>\n <div class=\"mt-3\">\n <select \n class=\"form-select\" \n size=\"5\" \n (change)=\"onFavoriteSelected($event, userFavorites())\">\n <option value=\"\">Select a favorite value...</option>\n @for (favorite of userFavorites(); track favorite.id) {\n <option [value]=\"favorite.id\">\n {{ getFavoriteDisplayValue(favorite) }}\n @if (hasCustomDisplayValue(favorite)) { (Custom Display) }\n </option>\n }\n </select>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>Your personal favorite values for this column\n </div>\n </div>\n </ng-template>\n </li>\n }\n\n @if (labGroupFavorites().length > 0) {\n <li [ngbNavItem]=\"'lab_group'\">\n <button ngbNavLink>\n <i class=\"bi bi-people-fill me-1\"></i>Lab Group\n <span class=\"badge bg-info ms-1\">{{ labGroupFavorites().length }}</span>\n </button>\n <ng-template ngbNavContent>\n <div class=\"mt-3\">\n <select \n class=\"form-select\" \n size=\"5\" \n (change)=\"onFavoriteSelected($event, labGroupFavorites())\">\n <option value=\"\">Select a favorite value...</option>\n @for (favorite of labGroupFavorites(); track favorite.id) {\n <option [value]=\"favorite.id\">\n {{ getFavoriteDisplayValue(favorite) }}\n @if (hasCustomDisplayValue(favorite)) { (Custom Display) }\n </option>\n }\n </select>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>Favorite values shared by your lab group\n </div>\n </div>\n </ng-template>\n </li>\n }\n\n @if (globalFavorites().length > 0) {\n <li [ngbNavItem]=\"'global'\">\n <button ngbNavLink>\n <i class=\"bi bi-globe me-1\"></i>Global\n <span class=\"badge bg-success ms-1\">{{ globalFavorites().length }}</span>\n </button>\n <ng-template ngbNavContent>\n <div class=\"mt-3\">\n <select \n class=\"form-select\" \n size=\"5\" \n (change)=\"onFavoriteSelected($event, globalFavorites())\">\n <option value=\"\">Select a favorite value...</option>\n @for (favorite of globalFavorites(); track favorite.id) {\n <option [value]=\"favorite.id\">\n {{ getFavoriteDisplayValue(favorite) }}\n @if (hasCustomDisplayValue(favorite)) { (Custom Display) }\n </option>\n }\n </select>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>Globally recommended values for this column\n </div>\n </div>\n </ng-template>\n </li>\n }\n </ul>\n\n <div [ngbNavOutlet]=\"favoritesNav\" class=\"mt-3\"></div>\n\n <hr class=\"my-3\">\n </div>\n }\n\n @if (isLoadingFavorites()) {\n <div class=\"text-center mb-4\">\n <div class=\"spinner-border spinner-border-sm text-primary me-2\"></div>\n <small class=\"text-muted\">Loading favorite options...</small>\n </div>\n <hr class=\"my-3\">\n }\n\n <!-- Value Input Section -->\n <div class=\"mb-3\">\n <div class=\"d-flex justify-content-between align-items-center mb-2\">\n <label for=\"metadataValue\" class=\"form-label mb-0\">\n Metadata Value\n @if (hasOntologyType) {\n <span class=\"badge bg-success ms-2\">\n <i class=\"bi bi-search me-1\"></i>Autocomplete Available\n </span>\n }\n @if (specialSyntaxType()) {\n <span class=\"badge bg-info ms-2\">\n <i class=\"bi bi-gear me-1\"></i>{{ getSpecialInputTitle() }}\n </span>\n }\n </label>\n\n @if (specialSyntaxType()) {\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"specialInputToggle\"\n [checked]=\"showSpecialInput()\"\n (change)=\"toggleSpecialInput()\">\n <label class=\"form-check-label small text-muted\" for=\"specialInputToggle\">\n Enhanced Editor\n </label>\n </div>\n }\n </div>\n\n <!-- Special SDRF Syntax Input Components -->\n @if (showSpecialInput() && specialSyntaxType()) {\n <div class=\"border rounded p-3 mb-3 bg-body-secondary\">\n <div class=\"mb-2\">\n <small class=\"text-muted fw-semibold\">\n <i class=\"bi bi-gear me-1\"></i>{{ getSpecialInputTitle() }}\n </small>\n </div>\n\n @switch (specialSyntaxType()) {\n @case ('age') {\n <ccv-sdrf-age-input\n [value]=\"specialInputValue()\"\n (valueChange)=\"onSpecialInputChange($event)\">\n </ccv-sdrf-age-input>\n }\n @case ('modification') {\n <ccv-sdrf-modification-input\n [value]=\"specialInputValue()\"\n [columnId]=\"config.columnId ?? null\"\n [templateId]=\"config.templateId ?? null\"\n (valueChange)=\"onSpecialInputChange($event)\">\n </ccv-sdrf-modification-input>\n }\n @case ('cleavage') {\n <ccv-sdrf-cleavage-input\n [value]=\"specialInputValue()\"\n [columnId]=\"config.columnId ?? null\"\n [templateId]=\"config.templateId ?? null\"\n (valueChange)=\"onSpecialInputChange($event)\">\n </ccv-sdrf-cleavage-input>\n }\n @case ('spiked_compound') {\n <ccv-sdrf-spiked-compound-input\n [value]=\"specialInputValue()\"\n (valueChange)=\"onSpecialInputChange($event)\">\n </ccv-sdrf-spiked-compound-input>\n }\n }\n\n <div class=\"form-text mt-2\">\n <i class=\"bi bi-info-circle me-1\"></i>\n Use the enhanced editor for structured input, or toggle off for manual text entry.\n </div>\n </div>\n }\n\n @if (hasOntologyType && !showSpecialInput()) {\n <!-- Search type selection for ontology -->\n <div class=\"mb-2\">\n <small class=\"text-muted d-block mb-1\">Search Mode:</small>\n <div class=\"btn-group btn-group-sm\" role=\"group\">\n <button\n type=\"button\"\n class=\"btn\"\n [class]=\"searchType() === 'icontains' ? 'btn-primary' : 'btn-outline-primary'\"\n (click)=\"onSearchTypeChange('icontains')\">\n <i class=\"bi bi-search me-1\"></i>Contains\n </button>\n <button\n type=\"button\"\n class=\"btn\"\n [class]=\"searchType() === 'istartswith' ? 'btn-primary' : 'btn-outline-primary'\"\n (click)=\"onSearchTypeChange('istartswith')\">\n <i class=\"bi bi-arrow-right me-1\"></i>Starts with\n </button>\n </div>\n </div>\n\n <!-- Typeahead input for ontology suggestions -->\n <div class=\"input-group\">\n <input\n type=\"text\"\n class=\"form-control\"\n [class.border-success]=\"selectedFavorite() !== null\"\n id=\"metadataValue\"\n formControlName=\"value\"\n placeholder=\"Type to search ontology suggestions...\"\n [ngbTypeahead]=\"searchOntology\"\n [resultFormatter]=\"formatSuggestion\"\n [inputFormatter]=\"inputFormatter\"\n (selectItem)=\"onSuggestionSelected($event)\"\n [editable]=\"true\"\n [showHint]=\"true\"\n [focusFirst]=\"false\"\n container=\"body\">\n @if (isLoadingSuggestions()) {\n <span class=\"input-group-text\">\n <div class=\"spinner-border spinner-border-sm\" role=\"status\">\n <span class=\"visually-hidden\">Loading...</span>\n </div>\n </span>\n } @else {\n <span class=\"input-group-text\">\n <i class=\"bi bi-search text-muted\"></i>\n </span>\n }\n <button\n type=\"button\"\n class=\"btn btn-outline-secondary\"\n (click)=\"clearValue()\"\n title=\"Clear value\">\n <i class=\"bi bi-x\"></i>\n </button>\n </div>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>\n Search {{ searchType() === 'icontains' ? 'contains' : 'starts with' }} for {{ ontologyTypeLabel }} ontology\n </div>\n } @else if (!showSpecialInput()) {\n <!-- Regular input when no ontology type or special input is disabled -->\n <div class=\"input-group\">\n <input\n type=\"text\"\n class=\"form-control\"\n [class.border-success]=\"selectedFavorite() !== null\"\n id=\"metadataValue\"\n formControlName=\"value\"\n placeholder=\"Enter metadata value\">\n <button\n type=\"button\"\n class=\"btn btn-outline-secondary\"\n (click)=\"clearValue()\"\n title=\"Clear value\">\n <i class=\"bi bi-x\"></i>\n </button>\n </div>\n <div class=\"form-text text-muted\">\n @if (specialSyntaxType()) {\n Manual text entry mode. Use the Enhanced Editor toggle for structured {{ specialSyntaxType() }} input.\n } @else {\n Enter the value manually (no ontology suggestions available for this column type)\n }\n </div>\n }\n </div>\n\n <!-- Character count and value info -->\n <div class=\"mb-3\">\n <div class=\"d-flex justify-content-between align-items-center\">\n <small class=\"text-muted\">\n Characters: {{ editForm.get('value')?.value?.length \|\| 0 }}/500\n </small>\n @if (getSelectedFavoriteInfo()) {\n <small class=\"text-info\">\n <i class=\"bi bi-info-circle me-1\"></i>{{ getSelectedFavoriteInfo() }}\n </small>\n }\n </div>\n </div>\n\n </form>\n </div>\n\n <!-- Sample Selection Panel -->\n @if (hasMultiSampleEdit) {\n <div class=\"col-md-4\">\n <div class=\"border-start ps-3\">\n <div class=\"d-flex justify-content-between align-items-center mb-3\">\n <h6 class=\"mb-0 text-muted\">\n <i class=\"bi bi-list-check me-1\"></i>Apply to Samples\n </h6>\n <span class=\"badge bg-primary\">\n {{ selectedSampleCount }}/{{ totalSampleCount }}\n </span>\n </div>\n\n <!-- Select All/Clear All Controls -->\n <div class=\"d-flex gap-1 mb-3\">\n <button \n type=\"button\" \n class=\"btn btn-outline-primary btn-sm flex-fill\"\n (click)=\"selectAllSamples()\"\n [disabled]=\"selectedSampleCount === totalSampleCount\">\n <i class=\"bi bi-check-all me-1\"></i>All\n </button>\n <button \n type=\"button\" \n class=\"btn btn-outline-secondary btn-sm flex-fill\"\n (click)=\"clearSampleSelection()\"\n [disabled]=\"selectedSampleCount === 0\">\n <i class=\"bi bi-x me-1\"></i>Clear\n </button>\n </div>\n\n <!-- Sample List -->\n <div class=\"sample-list\" style=\"max-height: 400px; overflow-y: auto;\">\n @for (sample of sampleData; track sample.index) {\n <div class=\"form-check d-flex align-items-center mb-2 p-2 rounded border-bottom\">\n <input \n class=\"form-check-input me-2\" \n type=\"checkbox\" \n [id]=\"'sample-' + sample.index\"\n [checked]=\"isSampleSelected(sample.index)\"\n (change)=\"toggleSampleSelection(sample.index)\">\n <label \n [for]=\"'sample-' + sample.index\" \n class=\"form-check-label flex-grow-1 cursor-pointer\">\n <div class=\"d-flex justify-content-between align-items-center\">\n <div>\n <div class=\"fw-semibold\">Sample {{ sample.index }}</div>\n @if (sample.sourceName) {\n <small class=\"text-muted\">{{ sample.sourceName }}</small>\n }\n </div>\n <div class=\"text-end\">\n <small class=\"text-muted\">Current:</small>\n <div class=\"small fw-mono\" [title]=\"sample.value \|\| ''\">\n {{ (sample.value && sample.value.length > 15) ? (sample.value \| slice:0:15) + '...' : (sample.value \|\| '-') }}\n </div>\n </div>\n </div>\n </label>\n </div>\n }\n </div>\n\n @if (selectedSampleCount > 0) {\n <div class=\"alert alert-info mt-3 p-2\">\n <small>\n <i class=\"bi bi-info-circle me-1\"></i>\n The value will be applied to {{ selectedSampleCount }} selected sample{{ selectedSampleCount !== 1 ? 's' : '' }}.\n </small>\n </div>\n }\n </div>\n </div>\n }\n </div>\n</div>\n\n<div class=\"modal-footer\">\n <div class=\"me-auto\">\n @if (editForm.get('value')?.value && !isLoading() && !isFromFavoriteManagement) {\n <div class=\"btn-group dropup\" ngbDropdown>\n <button\n type=\"button\"\n class=\"btn btn-outline-warning btn-sm dropdown-toggle\"\n ngbDropdownToggle>\n <i class=\"bi bi-heart me-1\"></i>Add to Favorites\n </button>\n <div class=\"dropdown-menu\" ngbDropdownMenu>\n <button\n type=\"button\"\n class=\"dropdown-item\"\n (click)=\"addToFavorites('user')\">\n <i class=\"bi bi-person me-2\"></i>Personal Favorite\n </button>\n <button\n type=\"button\"\n class=\"dropdown-item\"\n (click)=\"addToFavorites('lab_group')\">\n <i class=\"bi bi-people me-2\"></i>Lab Group Favorite\n </button>\n <button\n type=\"button\"\n class=\"dropdown-item\"\n (click)=\"addToFavorites('global')\">\n <i class=\"bi bi-globe me-2\"></i>Global Recommendation\n </button>\n </div>\n </div>\n }\n </div>\n\n <div class=\"d-flex gap-2\">\n <button type=\"button\" class=\"btn btn-outline-secondary\" (click)=\"onCancel()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n <button\n type=\"button\"\n class=\"btn btn-primary\"\n (click)=\"onSubmit()\"\n [disabled]=\"editForm.invalid \|\| isLoading()\">\n @if (isLoading()) {\n <span class=\"spinner-border spinner-border-sm me-2\"></span>\n }\n <i class=\"bi bi-check-circle me-1\"></i>\n Save Value\n </button>\n </div>\n</div>\n","import { Component, inject, signal, computed, OnInit } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { FormsModule } from '@angular/forms';\nimport { NgbActiveModal } from '@ng-bootstrap/ng-bootstrap';\nimport { LabGroup, LabGroupService } from '@noatgnu/cupcake-core';\n\nexport interface ExcelExportOptions {\n includeLabGroups: 'none' \| 'selected' \| 'all';\n selectedLabGroupIds: number[];\n includePools: boolean;\n}\n\n@Component({\n selector: 'ccv-excel-export-modal',\n standalone: true,\n imports: [CommonModule, FormsModule],\n templateUrl: './excel-export-modal.html',\n styleUrl: './excel-export-modal.scss'\n})\nexport class ExcelExportModalComponent implements OnInit {\n activeModal = inject(NgbActiveModal);\n labGroupService = inject(LabGroupService);\n\n // State\n isLoadingLabGroups = signal(false);\n availableLabGroups = signal<LabGroup[]>([]);\n \n // Form data\n includeLabGroups = signal<'none' \| 'selected' \| 'all'>('none');\n selectedLabGroupIds = signal<number[]>([]);\n includePools = signal(true);\n\n // Computed\n showLabGroupSelection = computed(() => this.includeLabGroups() === 'selected');\n canConfirm = computed(() => {\n if (this.includeLabGroups() === 'selected') {\n return this.selectedLabGroupIds().length > 0;\n }\n return true;\n });\n\n ngOnInit(): void {\n this.loadLabGroups();\n }\n\n private loadLabGroups(): void {\n this.isLoadingLabGroups.set(true);\n this.labGroupService.getMyLabGroups().subscribe({\n next: (response) => {\n this.availableLabGroups.set(response.results \|\| []);\n this.isLoadingLabGroups.set(false);\n },\n error: (error) => {\n console.error('Error loading lab groups:', error);\n this.isLoadingLabGroups.set(false);\n }\n });\n }\n\n onLabGroupToggle(labGroupId: number, checked: boolean): void {\n const currentIds = this.selectedLabGroupIds();\n if (checked) {\n if (!currentIds.includes(labGroupId)) {\n this.selectedLabGroupIds.set([...currentIds, labGroupId]);\n }\n } else {\n this.selectedLabGroupIds.set(currentIds.filter(id => id !== labGroupId));\n }\n }\n\n isLabGroupSelected(labGroupId: number): boolean {\n return this.selectedLabGroupIds().includes(labGroupId);\n }\n\n onIncludeLabGroupsChange(value: 'none' \| 'selected' \| 'all'): void {\n this.includeLabGroups.set(value);\n if (value !== 'selected') {\n this.selectedLabGroupIds.set([]);\n }\n }\n\n selectAllLabGroups(): void {\n const allIds = this.availableLabGroups().map(lg => lg.id);\n this.selectedLabGroupIds.set(allIds);\n }\n\n deselectAllLabGroups(): void {\n this.selectedLabGroupIds.set([]);\n }\n\n confirm(): void {\n const options: ExcelExportOptions = {\n includeLabGroups: this.includeLabGroups(),\n selectedLabGroupIds: this.selectedLabGroupIds(),\n includePools: this.includePools()\n };\n this.activeModal.close(options);\n }\n\n cancel(): void {\n this.activeModal.dismiss();\n }\n}\n","<div class=\"modal-header\">\n <h4 class=\"modal-title\">Excel Export Options</h4>\n <button type=\"button\" class=\"btn-close\" aria-label=\"Close\" (click)=\"cancel()\"></button>\n</div>\n\n<div class=\"modal-body\">\n <!-- Lab Groups Section -->\n <div class=\"mb-4\">\n <h6 class=\"fw-semibold mb-3\">\n <i class=\"bi bi-people me-2\"></i>Lab Group Recommendations\n </h6>\n \n <div class=\"form-check mb-2\">\n <input \n class=\"form-check-input\" \n type=\"radio\" \n name=\"includeLabGroups\"\n id=\"labGroups_none\"\n [checked]=\"includeLabGroups() === 'none'\"\n (change)=\"onIncludeLabGroupsChange('none')\">\n <label class=\"form-check-label\" for=\"labGroups_none\">\n <strong>None</strong> - Only user-specific and global recommendations\n </label>\n </div>\n\n <div class=\"form-check mb-2\">\n <input \n class=\"form-check-input\" \n type=\"radio\" \n name=\"includeLabGroups\"\n id=\"labGroups_selected\"\n [checked]=\"includeLabGroups() === 'selected'\"\n (change)=\"onIncludeLabGroupsChange('selected')\">\n <label class=\"form-check-label\" for=\"labGroups_selected\">\n <strong>Selected groups</strong> - Choose specific lab groups\n </label>\n </div>\n\n <div class=\"form-check mb-3\">\n <input \n class=\"form-check-input\" \n type=\"radio\" \n name=\"includeLabGroups\"\n id=\"labGroups_all\"\n [checked]=\"includeLabGroups() === 'all'\"\n (change)=\"onIncludeLabGroupsChange('all')\">\n <label class=\"form-check-label\" for=\"labGroups_all\">\n <strong>All groups</strong> - Include all available lab group recommendations\n </label>\n </div>\n\n <!-- Lab Group Selection -->\n @if (showLabGroupSelection()) {\n <div class=\"border rounded p-3 bg-light\">\n @if (isLoadingLabGroups()) {\n <div class=\"text-center\">\n <div class=\"spinner-border spinner-border-sm me-2\" role=\"status\"></div>\n Loading lab groups...\n </div>\n } @else if (availableLabGroups().length === 0) {\n <div class=\"text-muted text-center\">\n <i class=\"bi bi-info-circle me-2\"></i>\n No lab groups available\n </div>\n } @else {\n <div class=\"d-flex justify-content-between align-items-center mb-3\">\n <h6 class=\"mb-0\">Select Lab Groups:</h6>\n <div class=\"btn-group btn-group-sm\">\n <button \n type=\"button\" \n class=\"btn btn-outline-secondary btn-sm\"\n (click)=\"selectAllLabGroups()\"\n [disabled]=\"selectedLabGroupIds().length === availableLabGroups().length\">\n Select All\n </button>\n <button \n type=\"button\" \n class=\"btn btn-outline-secondary btn-sm\"\n (click)=\"deselectAllLabGroups()\"\n [disabled]=\"selectedLabGroupIds().length === 0\">\n Clear All\n </button>\n </div>\n </div>\n\n <div class=\"row\">\n @for (labGroup of availableLabGroups(); track labGroup.id) {\n <div class=\"col-md-6 mb-2\">\n <div class=\"form-check\">\n <input \n class=\"form-check-input\" \n type=\"checkbox\" \n [id]=\"'labGroup_' + labGroup.id\"\n [checked]=\"isLabGroupSelected(labGroup.id)\"\n (change)=\"onLabGroupToggle(labGroup.id, $event.target.checked)\">\n <label class=\"form-check-label\" [for]=\"'labGroup_' + labGroup.id\">\n {{ labGroup.name }}\n @if (labGroup.description) {\n <small class=\"text-muted d-block\">{{ labGroup.description }}</small>\n }\n </label>\n </div>\n </div>\n }\n </div>\n\n @if (selectedLabGroupIds().length > 0) {\n <div class=\"mt-2\">\n <small class=\"text-success\">\n <i class=\"bi bi-check-circle me-1\"></i>\n {{ selectedLabGroupIds().length }} group{{ selectedLabGroupIds().length > 1 ? 's' : '' }} selected\n </small>\n </div>\n }\n }\n </div>\n }\n </div>\n\n <!-- Pools Section -->\n <div class=\"mb-4\">\n <h6 class=\"fw-semibold mb-3\">\n <i class=\"bi bi-collection me-2\"></i>Sample Pools\n </h6>\n <div class=\"form-check\">\n <input \n class=\"form-check-input\" \n type=\"checkbox\" \n id=\"includePools\"\n [checked]=\"includePools()\"\n (change)=\"includePools.set($event.target.checked)\">\n <label class=\"form-check-label\" for=\"includePools\">\n Include sample pools in export\n </label>\n <small class=\"form-text text-muted d-block mt-1\">\n Creates additional worksheets with pool information and mappings\n </small>\n </div>\n </div>\n\n <!-- Summary -->\n <div class=\"alert alert-info\">\n <h6 class=\"alert-heading\">\n <i class=\"bi bi-info-circle me-2\"></i>Export Summary\n </h6>\n <ul class=\"mb-0\">\n <li>\n <strong>Lab Groups:</strong>\n @switch (includeLabGroups()) {\n @case ('none') { None - only user and global recommendations }\n @case ('selected') { \n @if (selectedLabGroupIds().length > 0) {\n {{ selectedLabGroupIds().length }} selected group{{ selectedLabGroupIds().length > 1 ? 's' : '' }}\n } @else {\n No groups selected\n }\n }\n @case ('all') { All available lab groups }\n }\n </li>\n <li><strong>Sample Pools:</strong> {{ includePools() ? 'Included' : 'Excluded' }}</li>\n </ul>\n </div>\n</div>\n\n<div class=\"modal-footer\">\n <button type=\"button\" class=\"btn btn-secondary\" (click)=\"cancel()\">\n Cancel\n </button>\n <button \n type=\"button\" \n class=\"btn btn-primary\"\n [disabled]=\"!canConfirm()\"\n (click)=\"confirm()\">\n <i class=\"bi bi-file-earmark-spreadsheet me-2\"></i>\n Export Excel\n </button>\n</div>\n","import { Component, inject, Input } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { NgbActiveModal, NgbModule } from '@ng-bootstrap/ng-bootstrap';\n\nexport interface ValidationResults {\n success: boolean;\n metadata_table_id: number;\n metadata_table_name: string;\n validation_timestamp: string;\n errors: string[];\n warnings: string[];\n}\n\n@Component({\n selector: 'ccv-validation-results-modal',\n imports: [CommonModule, NgbModule],\n templateUrl: './validation-results-modal.html',\n styleUrl: './validation-results-modal.scss'\n})\nexport class ValidationResultsModal {\n @Input() results?: ValidationResults;\n \n activeModal = inject(NgbActiveModal);\n \n formatTimestamp(timestamp: string): string {\n try {\n const date = new Date(timestamp);\n return date.toLocaleString();\n } catch (error) {\n return timestamp;\n }\n }\n}\n","<div class=\"modal-header\">\n <h4 class=\"modal-title\">\n @if (results?.success) {\n <i class=\"fa fa-check-circle me-2 text-success\"></i>\n Validation Passed\n } @else {\n <i class=\"fa fa-exclamation-triangle me-2 text-danger\"></i>\n Validation Failed\n }\n </h4>\n <button \n type=\"button\" \n class=\"btn-close\" \n aria-label=\"Close\"\n (click)=\"activeModal.dismiss()\">\n </button>\n</div>\n\n<div class=\"modal-body\">\n @if (results) {\n <div class=\"mb-3\">\n <h6 class=\"mb-2\">\n <i class=\"fa fa-table me-2 text-primary\"></i>\n {{ results.metadata_table_name }}\n </h6>\n <small class=\"text-muted\">\n <i class=\"fa fa-clock me-1\"></i>\n Validated: {{ formatTimestamp(results.validation_timestamp) }}\n </small>\n </div>\n\n @if (results.success) {\n <!-- Success message -->\n <div class=\"alert alert-success\">\n <i class=\"fa fa-check-circle me-2\"></i>\n <strong>Validation Successful!</strong>\n <p class=\"mb-0 mt-2\">\n Your metadata table complies with SDRF format standards and contains no validation errors.\n </p>\n </div>\n } @else {\n <!-- Validation failed - show errors and warnings -->\n <div class=\"alert alert-danger mb-3\">\n <i class=\"fa fa-exclamation-triangle me-2\"></i>\n <strong>Validation Failed</strong>\n <p class=\"mb-0 mt-2\">\n Your metadata table contains validation issues that need to be resolved.\n </p>\n </div>\n\n <!-- Summary -->\n <div class=\"row mb-3\">\n <div class=\"col-md-6\">\n <div class=\"card border-danger\">\n <div class=\"card-body text-center\">\n <h5 class=\"card-title text-danger\">{{ results.errors.length }}</h5>\n <p class=\"card-text\">Error{{ results.errors.length !== 1 ? 's' : '' }}</p>\n </div>\n </div>\n </div>\n <div class=\"col-md-6\">\n <div class=\"card border-warning\">\n <div class=\"card-body text-center\">\n <h5 class=\"card-title text-warning\">{{ results.warnings.length }}</h5>\n <p class=\"card-text\">Warning{{ results.warnings.length !== 1 ? 's' : '' }}</p>\n </div>\n </div>\n </div>\n </div>\n\n <!-- Errors -->\n @if (results.errors.length > 0) {\n <div class=\"mb-3\">\n <h6 class=\"text-danger\">\n <i class=\"fa fa-times-circle me-2\"></i>\n Errors ({{ results.errors.length }})\n </h6>\n <div class=\"validation-issues\">\n @for (error of results.errors; track $index) {\n <div class=\"alert alert-danger py-2 px-3\">\n <i class=\"fa fa-times-circle me-2\"></i>\n {{ error }}\n </div>\n }\n </div>\n </div>\n }\n\n <!-- Warnings -->\n @if (results.warnings.length > 0) {\n <div class=\"mb-3\">\n <h6 class=\"text-warning\">\n <i class=\"fa fa-exclamation-triangle me-2\"></i>\n Warnings ({{ results.warnings.length }})\n </h6>\n <div class=\"validation-issues\">\n @for (warning of results.warnings; track $index) {\n <div class=\"alert alert-warning py-2 px-3\">\n <i class=\"fa fa-exclamation-triangle me-2\"></i>\n {{ warning }}\n </div>\n }\n </div>\n </div>\n }\n\n <!-- Help text -->\n <div class=\"alert alert-info\">\n <i class=\"fa fa-info-circle me-2\"></i>\n <strong>Need Help?</strong>\n <ul class=\"mb-0 mt-2\">\n <li>Errors must be fixed before your metadata can be exported as valid SDRF</li>\n <li>Warnings indicate potential issues but don't prevent SDRF export</li>\n <li>Check the <a href=\"/help/sdrf-validation\" target=\"_blank\">SDRF validation guide</a> for detailed explanations</li>\n </ul>\n </div>\n }\n }\n</div>\n\n<div class=\"modal-footer\">\n <button \n type=\"button\" \n class=\"btn btn-secondary\"\n (click)=\"activeModal.dismiss()\">\n Close\n </button>\n</div>\n","import { Injectable, OnDestroy, inject } from '@angular/core';\r\nimport { BehaviorSubject, Observable, Subject } from 'rxjs';\r\nimport { takeUntil, filter, map, tap } from 'rxjs/operators';\r\nimport { NgbModal } from '@ng-bootstrap/ng-bootstrap';\r\nimport {\r\n AsyncTaskStatus,\r\n AsyncTaskCreateResponse,\r\n MetadataImportRequest,\r\n MetadataExportRequest,\r\n BulkExportRequest,\r\n BulkExcelExportRequest,\r\n MetadataValidationRequest\r\n} from '../models';\r\nimport {\r\n AsyncTaskService as LibraryAsyncTaskService,\r\n AsyncExportService,\r\n AsyncImportService,\r\n AsyncValidationService,\r\n Websocket,\r\n ElectronService\r\n} from '../services';\r\nimport { ToastService } from '@noatgnu/cupcake-core';\r\nimport { ValidationResultsModal, ValidationResults } from './validation-results-modal/validation-results-modal';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class AsyncTaskUIService implements OnDestroy {\r\n private destroy$ = new Subject<void>();\r\n private tasksSubject = new BehaviorSubject<AsyncTaskStatus[]>([]);\r\n private isSubscribed = false;\r\n private metadataTableRefreshSubject = new Subject<number>();\r\n private taskCompletedSubject = new Subject<AsyncTaskStatus>();\r\n private exportTaskCompletedSubject = new Subject<AsyncTaskStatus>();\r\n\r\n private readonly sessionId = this.generateSessionId();\r\n private initiatedTasks = new Set<string>();\r\n\r\n private libraryAsyncTaskService = inject(LibraryAsyncTaskService);\r\n private asyncExportService = inject(AsyncExportService);\r\n private asyncImportService = inject(AsyncImportService);\r\n private asyncValidationService = inject(AsyncValidationService);\r\n private toastService = inject(ToastService);\r\n private websocket = inject(Websocket);\r\n private modalService = inject(NgbModal);\r\n private electronService = inject(ElectronService);\r\n\r\n public tasks$ = this.tasksSubject.asObservable();\r\n public activeTasks$ = this.tasks$.pipe(\r\n map(tasks => {\r\n const taskArray = Array.isArray(tasks) ? tasks : [];\r\n return taskArray.filter(task => task.status === 'QUEUED' \|\| task.status === 'STARTED');\r\n })\r\n );\r\n\r\n public metadataTableRefresh$ = this.metadataTableRefreshSubject.asObservable();\r\n public taskCompleted$ = this.taskCompletedSubject.asObservable();\r\n public exportTaskCompleted$ = this.exportTaskCompletedSubject.asObservable();\r\n\r\n constructor() {\r\n this.initializeService();\r\n }\r\n\r\n ngOnDestroy(): void {\r\n this.destroy$.next();\r\n this.destroy$.complete();\r\n }\r\n\r\n private initializeService(): void {\r\n this.startRealtimeUpdates();\r\n }\r\n\r\n startRealtimeUpdates(): void {\r\n if (this.isSubscribed) {\r\n return;\r\n }\r\n\r\n this.isSubscribed = true;\r\n\r\n if (!this.websocket.connectionState$() \|\| this.websocket.connectionState$() === 'disconnected') {\r\n this.websocket.connect();\r\n }\r\n\r\n this.websocket.isConnected$.pipe(\r\n takeUntil(this.destroy$),\r\n filter(connected => connected)\r\n ).subscribe(() => {\r\n this.websocket.subscribe('async_task_updates');\r\n });\r\n\r\n this.websocket.filterMessages('async_task.update').pipe(\r\n takeUntil(this.destroy$)\r\n ).subscribe((message: any) => {\r\n this.handleTaskUpdate(message);\r\n });\r\n\r\n this.getTasks().subscribe({\r\n next: tasks => {\r\n const taskArray = Array.isArray(tasks) ? tasks : [];\r\n this.tasksSubject.next(taskArray);\r\n },\r\n error: error => {\r\n console.error('Error loading initial tasks:', error);\r\n }\r\n });\r\n }\r\n\r\n stopRealtimeUpdates(): void {\r\n this.isSubscribed = false;\r\n this.destroy$.next();\r\n }\r\n\r\n getTasks(): Observable<AsyncTaskStatus[]> {\r\n return this.libraryAsyncTaskService.getAsyncTasks().pipe(\r\n map(response => response.results \|\| [])\r\n );\r\n }\r\n\r\n getTask(taskId: string): Observable<AsyncTaskStatus> {\r\n return this.libraryAsyncTaskService.getAsyncTask(taskId);\r\n }\r\n\r\n cancelTask(taskId: string): Observable<{message: string}> {\r\n return this.libraryAsyncTaskService.cancelTask(taskId);\r\n }\r\n\r\n private generateSessionId(): string {\r\n return `session_${Date.now()}_${Math.random().toString(36).substr(2, 9)}`;\r\n }\r\n\r\n private isTaskInitiatedByThisTab(taskId: string): boolean {\r\n return this.initiatedTasks.has(taskId);\r\n }\r\n\r\n /\r\n Mark a task as initiated by this tab for tracking purposes\r\n /\r\n monitorTask(taskId: string): void {\r\n this.initiatedTasks.add(taskId);\r\n }\r\n\r\n queueExcelExport(request: MetadataExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncExportService.excelTemplate(request).pipe(\r\n tap(response => {\r\n this.initiatedTasks.add(response.taskId);\r\n })\r\n );\r\n }\r\n\r\n queueSdrfExport(request: MetadataExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncExportService.sdrfFile(request).pipe(\r\n tap(response => {\r\n this.initiatedTasks.add(response.taskId);\r\n })\r\n );\r\n }\r\n\r\n queueSdrfImport(request: MetadataImportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncImportService.sdrfFile(request).pipe(\r\n tap(response => {\r\n this.initiatedTasks.add(response.taskId);\r\n })\r\n );\r\n }\r\n\r\n queueExcelImport(request: MetadataImportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncImportService.excelFile(request);\r\n }\r\n\r\n queueBulkSdrfExport(request: BulkExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncExportService.multipleSdrfFiles(request).pipe(\r\n tap(response => {\r\n this.initiatedTasks.add(response.taskId);\r\n })\r\n );\r\n }\r\n\r\n queueBulkExcelExport(request: BulkExcelExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncExportService.multipleExcelTemplates(request);\r\n }\r\n\r\n downloadTaskResult(taskId: string): void {\r\n this.libraryAsyncTaskService.getDownloadUrl(taskId).subscribe({\r\n next: (response) => {\r\n console.log('Download task result - checking Electron service:', {\r\n isElectron: this.electronService.isElectron,\r\n downloadUrl: response.downloadUrl\r\n });\r\n\r\n if (this.electronService.isElectron) {\r\n console.log('Using Electron download for:', response.downloadUrl);\r\n this.electronService.downloadFile(response.downloadUrl)\r\n .then((filePath: string) => {\r\n console.log('Electron download successful:', filePath);\r\n this.toastService.success(`File downloaded to: ${filePath}`);\r\n })\r\n .catch((error: any) => {\r\n console.error('Error downloading file with Electron:', error);\r\n this.toastService.error('Failed to download file');\r\n });\r\n } else {\r\n console.log('Using browser fallback for:', response.downloadUrl);\r\n window.open(response.downloadUrl, '_blank');\r\n }\r\n },\r\n error: (error) => {\r\n console.error('Error getting download URL:', error);\r\n this.toastService.error('Failed to get download URL');\r\n }\r\n });\r\n }\r\n\r\n validateMetadataTable(validationRequest: MetadataValidationRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncValidationService.metadataTable(validationRequest).pipe(\r\n tap(response => {\r\n this.initiatedTasks.add(response.taskId);\r\n })\r\n );\r\n }\r\n\r\n private handleTaskUpdate(message: any): void {\r\n const taskId = message.task_id;\r\n const currentTasks = this.tasksSubject.value;\r\n const existingTaskIndex = currentTasks.findIndex(t => t.id === taskId);\r\n\r\n if (existingTaskIndex >= 0) {\r\n const existingTask = currentTasks[existingTaskIndex];\r\n const wasRunning = existingTask.status === 'QUEUED' \|\| existingTask.status === 'STARTED';\r\n\r\n const updatedTask: AsyncTaskStatus = {\r\n ...existingTask,\r\n status: message.status,\r\n progressPercentage: message.progress_percentage \|\| existingTask.progressPercentage,\r\n progressDescription: message.progress_description \|\| existingTask.progressDescription,\r\n errorMessage: message.error_message \|\| existingTask.errorMessage,\r\n result: message.result \|\| existingTask.result,\r\n };\r\n\r\n const updatedTasks = [...currentTasks];\r\n updatedTasks[existingTaskIndex] = updatedTask;\r\n this.tasksSubject.next(updatedTasks);\r\n\r\n if (message.status === 'STARTED') {\r\n this.showTaskProgressNotification(updatedTask, existingTask);\r\n }\r\n\r\n if (wasRunning && (message.status === 'SUCCESS' \|\| message.status === 'FAILURE' \|\| message.status === 'CANCELLED')) {\r\n this.showTaskCompletionNotification(updatedTask);\r\n \r\n const isTaskFromThisTab = this.isTaskInitiatedByThisTab(updatedTask.id);\r\n this.taskCompletedSubject.next(updatedTask);\r\n\r\n if (message.status === 'SUCCESS') {\r\n if (this.isImportTask(updatedTask.taskType) && updatedTask.metadataTable) {\r\n this.metadataTableRefreshSubject.next(updatedTask.metadataTable);\r\n }\r\n\r\n if (this.isExportTask(updatedTask.taskType)) {\r\n this.exportTaskCompletedSubject.next(updatedTask);\r\n this.handleExportTaskCompletion(updatedTask);\r\n }\r\n\r\n if (updatedTask.taskType === 'VALIDATE_TABLE' && updatedTask.metadataTable) {\r\n this.metadataTableRefreshSubject.next(updatedTask.metadataTable);\r\n }\r\n\r\n if ((updatedTask.taskType === 'REORDER_TABLE_COLUMNS') && updatedTask.metadataTable) {\r\n this.metadataTableRefreshSubject.next(updatedTask.metadataTable);\r\n }\r\n }\r\n\r\n if (isTaskFromThisTab) {\r\n this.initiatedTasks.delete(updatedTask.id);\r\n }\r\n }\r\n } else {\r\n this.getTasks().subscribe(tasks => {\r\n const taskArray = Array.isArray(tasks) ? tasks : [];\r\n this.tasksSubject.next(taskArray);\r\n\r\n const refreshedTask = taskArray.find(t => t.id === taskId);\r\n if (refreshedTask && (message.status === 'SUCCESS' \|\| message.status === 'FAILURE' \|\| message.status === 'CANCELLED')) {\r\n this.showTaskCompletionNotification(refreshedTask);\r\n \r\n const isTaskFromThisTab = this.isTaskInitiatedByThisTab(refreshedTask.id);\r\n this.taskCompletedSubject.next(refreshedTask);\r\n\r\n if (message.status === 'SUCCESS') {\r\n if (this.isImportTask(refreshedTask.taskType) && refreshedTask.metadataTable) {\r\n this.metadataTableRefreshSubject.next(refreshedTask.metadataTable);\r\n }\r\n\r\n if (this.isExportTask(refreshedTask.taskType)) {\r\n this.exportTaskCompletedSubject.next(refreshedTask);\r\n this.handleExportTaskCompletion(refreshedTask);\r\n }\r\n\r\n if (refreshedTask.taskType === 'VALIDATE_TABLE' && refreshedTask.metadataTable) {\r\n this.metadataTableRefreshSubject.next(refreshedTask.metadataTable);\r\n }\r\n\r\n if ((refreshedTask.taskType === 'REORDER_TABLE_COLUMNS') && refreshedTask.metadataTable) {\r\n this.metadataTableRefreshSubject.next(refreshedTask.metadataTable);\r\n }\r\n }\r\n\r\n if (isTaskFromThisTab) {\r\n this.initiatedTasks.delete(refreshedTask.id);\r\n }\r\n }\r\n });\r\n }\r\n }\r\n\r\n private showTaskProgressNotification(updatedTask: AsyncTaskStatus, previousTask: AsyncTaskStatus): void {\r\n const taskName = this.getTaskDisplayName(updatedTask.taskType);\r\n const tableName = updatedTask.metadataTableName ? ` for \"${updatedTask.metadataTableName}\"` : '';\r\n\r\n const progressChanged = Math.floor((updatedTask.progressPercentage \|\| 0) / 25) !== Math.floor((previousTask.progressPercentage \|\| 0) / 25);\r\n const descriptionChanged = updatedTask.progressDescription !== previousTask.progressDescription;\r\n\r\n if (progressChanged \|\| (descriptionChanged && updatedTask.progressDescription)) {\r\n let message = `${taskName}${tableName}`;\r\n if (updatedTask.progressPercentage && updatedTask.progressPercentage > 0) {\r\n message += ` (${updatedTask.progressPercentage}%)`;\r\n }\r\n if (updatedTask.progressDescription) {\r\n message += `: ${updatedTask.progressDescription}`;\r\n }\r\n\r\n this.toastService.info(message, 3000);\r\n }\r\n }\r\n\r\n private showTaskCompletionNotification(task: AsyncTaskStatus): void {\r\n const taskName = this.getTaskDisplayName(task.taskType);\r\n const tableName = task.metadataTableName ? ` for \"${task.metadataTableName}\"` : '';\r\n\r\n if (task.taskType === 'VALIDATE_TABLE') {\r\n this.handleValidationTaskCompletion(task);\r\n return;\r\n }\r\n\r\n if (task.taskType === 'IMPORT_SDRF' \|\| task.taskType === 'IMPORT_EXCEL') {\r\n this.handleImportTaskCompletion(task);\r\n return;\r\n }\r\n\r\n if (task.taskType === 'REORDER_TABLE_COLUMNS' \|\| task.taskType === 'REORDER_TEMPLATE_COLUMNS') {\r\n this.handleReorderTaskCompletion(task);\r\n return;\r\n }\r\n\r\n const progressInfo = task.progressPercentage && task.progressPercentage > 0 ? ` (${task.progressPercentage}%)` : '';\r\n const progressDesc = task.progressDescription ? `: ${task.progressDescription}` : '';\r\n\r\n switch (task.status) {\r\n case 'SUCCESS':\r\n this.toastService.success(\r\n `Task Completed: ${taskName}${tableName}${progressInfo} completed successfully${progressDesc}`\r\n );\r\n break;\r\n case 'FAILURE':\r\n this.toastService.error(\r\n `Task Failed: ${taskName}${tableName}${progressInfo} failed: ${task.errorMessage \|\| 'Unknown error'}${progressDesc}`\r\n );\r\n break;\r\n case 'CANCELLED':\r\n this.toastService.warning(\r\n `Task Cancelled: ${taskName}${tableName}${progressInfo} was cancelled${progressDesc}`\r\n );\r\n break;\r\n }\r\n }\r\n\r\n getTaskDisplayName(taskType: string): string {\r\n const typeMap: Record<string, string> = {\r\n 'EXPORT_EXCEL': 'Excel export',\r\n 'EXPORT_SDRF': 'SDRF export',\r\n 'IMPORT_SDRF': 'SDRF import',\r\n 'IMPORT_EXCEL': 'Excel import',\r\n 'EXPORT_MULTIPLE_SDRF': 'Bulk SDRF export',\r\n 'EXPORT_MULTIPLE_EXCEL': 'Bulk Excel export',\r\n 'VALIDATE_TABLE': 'Table validation',\r\n 'REORDER_TABLE_COLUMNS': 'Column reordering',\r\n 'REORDER_TEMPLATE_COLUMNS': 'Template column reordering',\r\n };\r\n return typeMap[taskType] \|\| taskType;\r\n }\r\n\r\n getTaskStatusClass(status: string): string {\r\n const statusMap: Record<string, string> = {\r\n 'QUEUED': 'badge-secondary',\r\n 'STARTED': 'badge-primary',\r\n 'SUCCESS': 'badge-success',\r\n 'FAILURE': 'badge-danger',\r\n 'CANCELLED': 'badge-warning',\r\n };\r\n return statusMap[status] \|\| 'badge-secondary';\r\n }\r\n\r\n formatDuration(duration: number \| null): string {\r\n if (!duration) {\r\n return '-';\r\n }\r\n\r\n if (duration < 60) {\r\n return `${Math.round(duration)}s`;\r\n } else if (duration < 3600) {\r\n return `${Math.round(duration / 60)}m`;\r\n } else {\r\n const hours = Math.floor(duration / 3600);\r\n const minutes = Math.round((duration % 3600) / 60);\r\n return `${hours}h ${minutes}m`;\r\n }\r\n }\r\n\r\n canCancelTask(status: string): boolean {\r\n return status === 'QUEUED' \|\| status === 'STARTED';\r\n }\r\n\r\n canDownloadResult(task: AsyncTaskStatus): boolean {\r\n return task.status === 'SUCCESS' &&\r\n (task.taskType === 'EXPORT_EXCEL' \|\| task.taskType === 'EXPORT_SDRF' \|\|\r\n task.taskType === 'EXPORT_MULTIPLE_SDRF' \|\| task.taskType === 'EXPORT_MULTIPLE_EXCEL');\r\n }\r\n\r\n private isImportTask(taskType: string): boolean {\r\n return taskType === 'IMPORT_SDRF' \|\| taskType === 'IMPORT_EXCEL';\r\n }\r\n\r\n private isExportTask(taskType: string): boolean {\r\n return taskType === 'EXPORT_SDRF' \|\| taskType === 'EXPORT_EXCEL' \|\|\r\n taskType === 'EXPORT_MULTIPLE_SDRF' \|\| taskType === 'EXPORT_MULTIPLE_EXCEL';\r\n }\r\n\r\n private handleExportTaskCompletion(task: AsyncTaskStatus): void {\r\n const taskName = this.getTaskDisplayName(task.taskType);\r\n const tableName = task.metadataTableName ? ` for \"${task.metadataTableName}\"` : '';\r\n\r\n if (task.taskType === 'EXPORT_SDRF' \|\| task.taskType === 'EXPORT_EXCEL') {\r\n setTimeout(() => {\r\n this.downloadTaskResult(task.id);\r\n }, 1500);\r\n\r\n this.toastService.success(\r\n `${taskName}${tableName} completed! Starting download...`,\r\n 4000\r\n );\r\n } else {\r\n this.toastService.success(\r\n `${taskName}${tableName} completed! Check your downloads.`,\r\n 6000\r\n );\r\n }\r\n }\r\n\r\n private handleValidationTaskCompletion(task: AsyncTaskStatus): void {\r\n const taskName = this.getTaskDisplayName(task.taskType);\r\n const tableName = task.metadataTableName ? ` for \"${task.metadataTableName}\"` : '';\r\n const progressInfo = task.progressPercentage && task.progressPercentage > 0 ? ` (${task.progressPercentage}%)` : '';\r\n const progressDesc = task.progressDescription ? `: ${task.progressDescription}` : '';\r\n\r\n switch (task.status) {\r\n case 'SUCCESS':\r\n const result = task.result as any;\r\n if (result && result.success === false) {\r\n const errorCount = result.errors?.length \|\| 0;\r\n const warningCount = result.warnings?.length \|\| 0;\r\n\r\n this.toastService.error(\r\n `Validation Failed${progressInfo}: Found ${errorCount} error(s) and ${warningCount} warning(s) in \"${task.metadataTableName}\". Click to view details.${progressDesc}`,\r\n 10000\r\n );\r\n\r\n this.showValidationResultsModal(result);\r\n } else {\r\n this.toastService.success(\r\n `Validation Passed${progressInfo}: ${task.metadataTableName} is valid and complies with SDRF format${progressDesc}`\r\n );\r\n\r\n if (result) {\r\n this.showValidationResultsModal(result);\r\n }\r\n }\r\n break;\r\n case 'FAILURE':\r\n this.toastService.error(\r\n `Validation Error: ${taskName}${tableName} failed: ${task.errorMessage \|\| 'Unknown error'}`\r\n );\r\n break;\r\n case 'CANCELLED':\r\n this.toastService.warning(\r\n `Validation Cancelled: ${taskName}${tableName} was cancelled`\r\n );\r\n break;\r\n }\r\n }\r\n\r\n private showValidationResultsModal(validationResults: ValidationResults): void {\r\n const modalRef = this.modalService.open(ValidationResultsModal, {\r\n size: 'lg',\r\n backdrop: 'static',\r\n keyboard: false\r\n });\r\n\r\n modalRef.componentInstance.results = validationResults;\r\n\r\n modalRef.result.then((result) => {\r\n if (result === 'edit') {\r\n console.log('User wants to edit table to fix validation issues');\r\n }\r\n }).catch(() => {\r\n // Modal dismissed\r\n });\r\n }\r\n\r\n private handleImportTaskCompletion(task: AsyncTaskStatus): void {\r\n const taskName = this.getTaskDisplayName(task.taskType);\r\n const tableName = task.metadataTableName ? ` for \"${task.metadataTableName}\"` : '';\r\n const progressInfo = task.progressPercentage && task.progressPercentage > 0 ? ` (${task.progressPercentage}%)` : '';\r\n const progressDesc = task.progressDescription ? `: ${task.progressDescription}` : '';\r\n\r\n switch (task.status) {\r\n case 'SUCCESS':\r\n const result = task.result as any;\r\n let message = `${taskName}${tableName} completed successfully!`;\r\n\r\n if (result) {\r\n const details = [];\r\n if (result.columnsCreated \|\| result.totalColumns) {\r\n details.push(`${result.columnsCreated \|\| result.totalColumns \|\| 0} columns processed`);\r\n }\r\n if (result.poolsCreated) {\r\n details.push(`${result.poolsCreated} pools created`);\r\n }\r\n if (result.samplesProcessed) {\r\n details.push(`${result.samplesProcessed} samples processed`);\r\n }\r\n\r\n if (details.length > 0) {\r\n message = `${taskName}${tableName}${progressInfo} completed! ${details.join(', ')}.${progressDesc}`;\r\n } else {\r\n message = `${taskName}${tableName}${progressInfo} completed successfully!${progressDesc}`;\r\n }\r\n }\r\n\r\n this.toastService.success(message, 6000);\r\n break;\r\n\r\n case 'FAILURE':\r\n this.toastService.error(\r\n `${taskName} Failed${progressInfo}: ${task.errorMessage \|\| 'Import failed due to an unknown error'}${progressDesc}`\r\n );\r\n break;\r\n\r\n case 'CANCELLED':\r\n this.toastService.warning(\r\n `${taskName} Cancelled${progressInfo}: Import was cancelled${progressDesc}`\r\n );\r\n break;\r\n }\r\n }\r\n\r\n private handleReorderTaskCompletion(task: AsyncTaskStatus): void {\r\n const taskName = this.getTaskDisplayName(task.taskType);\r\n const tableName = task.metadataTableName ? ` for \"${task.metadataTableName}\"` : '';\r\n const progressInfo = task.progressPercentage && task.progressPercentage > 0 ? ` (${task.progressPercentage}%)` : '';\r\n const progressDesc = task.progressDescription ? `: ${task.progressDescription}` : '';\r\n\r\n switch (task.status) {\r\n case 'SUCCESS':\r\n const result = task.result as any;\r\n let message = `${taskName}${tableName} completed successfully!`;\r\n\r\n if (result) {\r\n const details = [];\r\n if (result.reorderedColumns) {\r\n details.push(`${result.reorderedColumns} columns reordered`);\r\n }\r\n if (result.reorderedPools) {\r\n details.push(`${result.reorderedPools} pools updated`);\r\n }\r\n if (result.schemaIdsUsed && result.schemaIdsUsed.length > 0) {\r\n details.push(`using ${result.schemaIdsUsed.length} schema(s)`);\r\n }\r\n\r\n if (details.length > 0) {\r\n message += `\\n${details.join(', ')}`;\r\n }\r\n }\r\n\r\n this.toastService.success(message, 5000);\r\n break;\r\n\r\n case 'FAILURE':\r\n this.toastService.error(\r\n `${taskName} Failed: ${task.errorMessage \|\| 'Unknown error'}${progressInfo}${progressDesc}`\r\n );\r\n break;\r\n\r\n case 'CANCELLED':\r\n this.toastService.warning(\r\n `${taskName} Cancelled: ${taskName}${tableName} was cancelled`\r\n );\r\n break;\r\n }\r\n }\r\n}","import { Component, inject, Input, signal } from '@angular/core';\r\nimport { CommonModule } from '@angular/common';\r\nimport { ReactiveFormsModule, FormBuilder } from '@angular/forms';\r\nimport { NgbActiveModal, NgbModule } from '@ng-bootstrap/ng-bootstrap';\r\n\r\nimport { AsyncTaskUIService } from '../async-task-ui';\r\nimport { ToastService } from '@noatgnu/cupcake-core';\r\nimport { MetadataValidationRequest, MetadataValidationConfig, AsyncTaskCreateResponse } from '../../models/async-task';\r\n\r\n@Component({\r\n selector: 'ccv-metadata-validation-modal',\r\n standalone: true,\r\n imports: [CommonModule, ReactiveFormsModule, NgbModule],\r\n templateUrl: './metadata-validation-modal.html',\r\n styleUrl: './metadata-validation-modal.scss'\r\n})\r\nexport class MetadataValidationModal {\r\n @Input() config?: MetadataValidationConfig;\r\n \r\n private fb = inject(FormBuilder);\r\n private asyncTaskService = inject(AsyncTaskUIService);\r\n private toastService = inject(ToastService);\r\n \r\n activeModal = inject(NgbActiveModal);\r\n \r\n isValidating = signal(false);\r\n validationError = signal<string \| null>(null);\r\n \r\n validationForm = this.fb.group({\r\n validate_sdrf_format: [true]\r\n });\r\n \r\n onSubmit(): void {\r\n if (this.validationForm.invalid \|\| !this.config) {\r\n return;\r\n }\r\n \r\n this.isValidating.set(true);\r\n this.validationError.set(null);\r\n \r\n const formValue = this.validationForm.value;\r\n const request: MetadataValidationRequest = {\r\n metadataTableId: this.config.metadataTableId,\r\n validateSdrfFormat: formValue.validate_sdrf_format ?? true\r\n };\r\n \r\n this.asyncTaskService.validateMetadataTable(request).subscribe({\r\n next: (response) => {\r\n this.toastService.success(\r\n `Validation started successfully for \"${this.config?.metadataTableName}\"`\r\n );\r\n this.activeModal.close({\r\n success: true,\r\n task_id: response.taskId,\r\n message: response.message\r\n });\r\n },\r\n error: (error) => {\r\n this.isValidating.set(false);\r\n const errorMessage = error?.error?.error \|\| error?.message \|\| 'Failed to start validation';\r\n this.validationError.set(errorMessage);\r\n this.toastService.error(`Validation failed: ${errorMessage}`);\r\n }\r\n });\r\n }\r\n}","<div class=\"modal-header\">\r\n <h4 class=\"modal-title\">\r\n <i class=\"bi bi-check-circle me-2 text-success\"></i>\r\n Validate Metadata Table\r\n </h4>\r\n <button \r\n type=\"button\" \r\n class=\"btn-close\" \r\n aria-label=\"Close\"\r\n (click)=\"activeModal.dismiss()\"\r\n [disabled]=\"isValidating()\">\r\n </button>\r\n</div>\r\n\r\n<form [formGroup]=\"validationForm\" (ngSubmit)=\"onSubmit()\">\r\n <div class=\"modal-body\">\r\n <div class=\"alert alert-info\">\r\n <i class=\"bi bi-info-circle me-2\"></i>\r\n <strong>{{ config?.metadataTableName }}</strong> will be validated against SDRF format standards using SDRFDataFrame.\r\n </div>\r\n\r\n <div class=\"row\">\r\n <div class=\"col-md-6\">\r\n <h6 class=\"mb-3\">Validation Options</h6>\r\n \r\n <div class=\"form-check mb-3\">\r\n <input \r\n class=\"form-check-input\" \r\n type=\"checkbox\" \r\n id=\"validate_sdrf_format\"\r\n formControlName=\"validate_sdrf_format\">\r\n <label class=\"form-check-label\" for=\"validate_sdrf_format\">\r\n <i class=\"bi bi-file-earmark-text me-1 text-warning\"></i>\r\n SDRF Format Validation\r\n </label>\r\n <small class=\"form-text text-muted d-block\">\r\n Validate against MAGE-TAB SDRF standard format using SDRFDataFrame\r\n </small>\r\n </div>\r\n </div>\r\n\r\n <div class=\"col-md-6\">\r\n <h6 class=\"mb-3\">What gets checked?</h6>\r\n \r\n <div class=\"validation-info\">\r\n <div class=\"mb-2\">\r\n <i class=\"bi bi-check-circle text-success me-2\"></i>\r\n Required SDRF columns presence\r\n </div>\r\n <div class=\"mb-2\">\r\n <i class=\"bi bi-check-circle text-success me-2\"></i>\r\n SDRF format compliance\r\n </div>\r\n <div class=\"mb-2\">\r\n <i class=\"bi bi-check-circle text-success me-2\"></i>\r\n Column header validation\r\n </div>\r\n <div class=\"mb-2\">\r\n <i class=\"bi bi-check-circle text-success me-2\"></i>\r\n Data structure integrity\r\n </div>\r\n </div>\r\n </div>\r\n </div>\r\n\r\n @if (validationError()) {\r\n <div class=\"alert alert-danger mt-3\">\r\n <i class=\"bi bi-exclamation-triangle me-2\"></i>\r\n {{ validationError() }}\r\n </div>\r\n }\r\n </div>\r\n\r\n <div class=\"modal-footer\">\r\n <button \r\n type=\"button\" \r\n class=\"btn btn-secondary\"\r\n (click)=\"activeModal.dismiss()\"\r\n [disabled]=\"isValidating()\">\r\n Cancel\r\n </button>\r\n \r\n <button \r\n type=\"submit\" \r\n class=\"btn btn-success\"\r\n [disabled]=\"validationForm.invalid \|\| isValidating()\">\r\n @if (isValidating()) {\r\n <span class=\"spinner-border spinner-border-sm me-2\" role=\"status\"></span>\r\n Starting Validation...\r\n } @else {\r\n <i class=\"bi bi-play me-2\"></i>\r\n Start Validation\r\n }\r\n </button>\r\n </div>\r\n</form>","import { Component, Input, Output, EventEmitter, OnInit, signal } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbActiveModal, NgbModule, NgbModal } from '@ng-bootstrap/ng-bootstrap';\nimport { MetadataTable, MetadataTableUpdateRequest, MetadataTableCreateRequest, SampleCountConfirmationError } from '../../models/metadata-table';\nimport { MetadataTableService } from '../../services/metadata-table';\nimport { LabGroupService, LabGroup } from '@noatgnu/cupcake-core';\n\n@Component({\n selector: 'ccv-metadata-table-edit-modal',\n standalone: true,\n imports: [CommonModule, ReactiveFormsModule, NgbModule],\n templateUrl: './metadata-table-edit-modal.html',\n styleUrl: './metadata-table-edit-modal.scss'\n})\nexport class MetadataTableEditModal implements OnInit {\n @Input() table?: MetadataTable; // Make optional for creation mode\n @Input() isCreateMode: boolean = false; // Add flag to determine mode\n @Output() tableSaved = new EventEmitter<MetadataTable>();\n\n editForm: FormGroup;\n isLoading = signal(false);\n availableLabGroups = signal<LabGroup[]>([]);\n isLoadingLabGroups = signal(false);\n\n constructor(\n private fb: FormBuilder,\n private activeModal: NgbActiveModal,\n private modalService: NgbModal,\n private metadataTableService: MetadataTableService,\n private labGroupService: LabGroupService\n ) {\n this.editForm = this.fb.group({\n name: ['', [Validators.required, Validators.maxLength(255)]],\n description: [''],\n sampleCount: [1, [Validators.required, Validators.min(1), Validators.max(10000)]],\n version: ['', [Validators.maxLength(50)]],\n labGroup: [null]\n });\n }\n\n ngOnInit() {\n if (this.table) {\n this.editForm.patchValue({\n name: this.table.name,\n description: this.table.description \|\| '',\n sampleCount: this.table.sampleCount,\n version: this.table.version,\n labGroup: this.table.labGroup \|\| null\n });\n }\n \n this.loadLabGroups();\n }\n\n loadLabGroups(): void {\n this.isLoadingLabGroups.set(true);\n \n this.labGroupService.getMyLabGroups({ limit: 10 }).subscribe({\n next: (response) => {\n this.availableLabGroups.set(response.results);\n this.isLoadingLabGroups.set(false);\n },\n error: (error) => {\n console.error('Error loading lab groups:', error);\n this.availableLabGroups.set([]);\n this.isLoadingLabGroups.set(false);\n }\n });\n }\n\n onSubmit(): void {\n if (this.editForm.valid) {\n this.isLoading.set(true);\n\n const formValue = this.editForm.value;\n\n if (this.isCreateMode) {\n const createData: MetadataTableCreateRequest = {\n name: formValue.name.trim(),\n description: formValue.description?.trim() \|\| undefined,\n sampleCount: formValue.sampleCount,\n version: formValue.version?.trim() \|\| undefined,\n labGroup: formValue.labGroup \|\| undefined,\n sourceApp: 'cupcake-vanilla'\n };\n\n this.performCreate(createData);\n } else if (this.table?.id) {\n const updateData: MetadataTableUpdateRequest = {\n name: formValue.name.trim(),\n description: formValue.description?.trim() \|\| undefined,\n sampleCount: formValue.sampleCount,\n version: formValue.version?.trim() \|\| undefined,\n labGroup: formValue.labGroup \|\| undefined\n };\n\n this.performUpdate(updateData);\n }\n }\n }\n\n private performCreate(createData: MetadataTableCreateRequest): void {\n this.metadataTableService.createMetadataTable(createData).subscribe({\n next: (newTable) => {\n this.tableSaved.emit(newTable);\n this.activeModal.close(newTable);\n },\n error: (error) => {\n console.error('Error creating metadata table:', error);\n this.isLoading.set(false);\n }\n });\n }\n\n private performUpdate(updateData: MetadataTableUpdateRequest, confirmed: boolean = false): void {\n if (!this.table?.id) return;\n\n if (confirmed) {\n updateData.sampleCountConfirmed = true;\n }\n\n this.metadataTableService.updateMetadataTable(this.table.id, updateData).subscribe({\n next: (updatedTable) => {\n this.tableSaved.emit(updatedTable);\n this.activeModal.close(updatedTable);\n },\n error: (error) => {\n if (this.isSampleCountConfirmationError(error)) {\n this.handleSampleCountConfirmation(error.error, updateData);\n } else {\n console.error('Error updating metadata table:', error);\n this.isLoading.set(false);\n }\n }\n });\n }\n\n private handleSampleCountConfirmation(errorData: SampleCountConfirmationError, updateData: MetadataTableUpdateRequest): void {\n this.isLoading.set(false);\n const details = errorData.sampleCountConfirmationDetails;\n\n const message = `Reducing sample count from ${details.currentSampleCount} to ${details.newSampleCount} will remove data:\n\n${details.validationResult.warnings.join('\\n')}\n\n${this.formatAffectedData(details.validationResult)}\n\nDo you want to continue?`;\n\n if (confirm(message)) {\n this.isLoading.set(true);\n this.performUpdate(updateData, true);\n }\n }\n\n private formatAffectedData(validationResult: any): string {\n let message = '';\n\n if (validationResult.affectedModifiers?.length > 0) {\n message += `\\nAffected column modifiers (${validationResult.affectedModifiers.length}):`;\n validationResult.affectedModifiers.slice(0, 5).forEach((modifier: any) => {\n message += `\\n- ${modifier.columnName} (samples: ${modifier.samples})`;\n });\n if (validationResult.affectedModifiers.length > 5) {\n message += `\\n- ... and ${validationResult.affectedModifiers.length - 5} more`;\n }\n }\n\n if (validationResult.affectedPools?.length > 0) {\n message += `\\nAffected sample pools (${validationResult.affectedPools.length}):`;\n validationResult.affectedPools.slice(0, 5).forEach((pool: any) => {\n message += `\\n- ${pool.poolName}`;\n });\n if (validationResult.affectedPools.length > 5) {\n message += `\\n- ... and ${validationResult.affectedPools.length - 5} more`;\n }\n }\n\n return message;\n }\n\n private isSampleCountConfirmationError(error: any): error is { error: SampleCountConfirmationError } {\n return error?.error?.sampleCountConfirmationDetails &&\n error?.error?.sampleCountConfirmationDetails?.requiresConfirmation === true;\n }\n\n onCancel(): void {\n this.activeModal.dismiss();\n }\n\n get title(): string {\n if (this.isCreateMode) {\n return 'Create New Metadata Table';\n }\n return `Edit ${this.table?.name \|\| 'Metadata Table'}`;\n }\n\n get hasChanges(): boolean {\n if (this.isCreateMode) {\n return this.editForm.dirty; // For creation mode, any change is valid\n }\n\n if (!this.table) return false;\n\n const formValue = this.editForm.value;\n return (\n formValue.name !== this.table.name \|\|\n formValue.description !== (this.table.description \|\| '') \|\|\n formValue.sampleCount !== this.table.sampleCount \|\|\n formValue.version !== this.table.version \|\|\n formValue.labGroup !== this.table.labGroup\n );\n }\n\n // Form validation helpers\n isFieldInvalid(fieldName: string): boolean {\n const field = this.editForm.get(fieldName);\n return !!(field && field.invalid && field.touched);\n }\n\n getFieldError(fieldName: string): string {\n const field = this.editForm.get(fieldName);\n if (!field \|\| !field.errors) return '';\n \n const displayName = this.getFieldDisplayName(fieldName);\n \n if (field.errors['required']) {\n return `${displayName} is required`;\n }\n if (field.errors['maxlength']) {\n return `${displayName} must be less than ${field.errors['maxlength'].requiredLength} characters`;\n }\n if (field.errors['min']) {\n return `${displayName} must be at least ${field.errors['min'].min}`;\n }\n if (field.errors['max']) {\n return `${displayName} must be no more than ${field.errors['max'].max}`;\n }\n \n return 'Invalid value';\n }\n\n private getFieldDisplayName(fieldName: string): string {\n const displayNames: Record<string, string> = {\n 'name': 'Table name',\n 'description': 'Description', \n 'sampleCount': 'Sample count',\n 'version': 'Version',\n 'labGroup': 'Lab group'\n };\n return displayNames[fieldName] \|\| fieldName;\n }\n}","<div class=\"modal-header\">\n <h4 class=\"modal-title\">\n <i class=\"bi bi-table me-2\"></i>{{ title }}\n </h4>\n <button type=\"button\" class=\"btn-close\" (click)=\"onCancel()\"></button>\n</div>\n\n<div class=\"modal-body\">\n <form [formGroup]=\"editForm\" (ngSubmit)=\"onSubmit()\">\n\n <!-- Table Name -->\n <div class=\"mb-3\">\n <label for=\"tableName\" class=\"form-label\">\n Table Name \n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"tableName\"\n formControlName=\"name\"\n [class.is-invalid]=\"isFieldInvalid('name')\"\n placeholder=\"Enter table name\"\n maxlength=\"255\">\n @if (isFieldInvalid('name')) {\n <div class=\"invalid-feedback\">\n {{ getFieldError('name') }}\n </div>\n }\n </div>\n\n <!-- Description -->\n <div class=\"mb-3\">\n <label for=\"tableDescription\" class=\"form-label\">\n Description\n </label>\n <textarea\n class=\"form-control\"\n id=\"tableDescription\"\n formControlName=\"description\"\n rows=\"3\"\n placeholder=\"Optional description of the metadata table\"></textarea>\n <div class=\"form-text\">\n Provide a brief description of what this metadata table contains or its purpose.\n </div>\n </div>\n\n <!-- Sample Count and Version Row -->\n <div class=\"row\">\n <div class=\"col-md-6 mb-3\">\n <label for=\"sampleCount\" class=\"form-label\">\n Sample Count \n </label>\n <input\n type=\"number\"\n class=\"form-control\"\n id=\"sampleCount\"\n formControlName=\"sampleCount\"\n [class.is-invalid]=\"isFieldInvalid('sampleCount')\"\n placeholder=\"Number of samples\"\n min=\"1\"\n max=\"10000\">\n @if (isFieldInvalid('sampleCount')) {\n <div class=\"invalid-feedback\">\n {{ getFieldError('sampleCount') }}\n </div>\n }\n <div class=\"form-text\">\n Number of samples in this metadata table (1-10,000).\n </div>\n </div>\n\n <div class=\"col-md-6 mb-3\">\n <label for=\"version\" class=\"form-label\">\n Version\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"version\"\n formControlName=\"version\"\n [class.is-invalid]=\"isFieldInvalid('version')\"\n placeholder=\"e.g., 1.0, v2.1\"\n maxlength=\"50\">\n @if (isFieldInvalid('version')) {\n <div class=\"invalid-feedback\">\n {{ getFieldError('version') }}\n </div>\n }\n <div class=\"form-text\">\n Version identifier for this table.\n </div>\n </div>\n </div>\n\n <!-- Lab Group Assignment -->\n <div class=\"mb-3\">\n <label for=\"labGroup\" class=\"form-label\">\n Lab Group Assignment\n </label>\n @if (isLoadingLabGroups()) {\n <div class=\"d-flex align-items-center\">\n <div class=\"spinner-border spinner-border-sm me-2\" role=\"status\">\n <span class=\"visually-hidden\">Loading...</span>\n </div>\n <span class=\"text-muted\">Loading lab groups...</span>\n </div>\n } @else {\n <select\n class=\"form-select\"\n id=\"labGroup\"\n formControlName=\"labGroup\">\n <option [value]=\"null\">No lab group (Personal)</option>\n @for (group of availableLabGroups(); track group.id) {\n <option [value]=\"group.id\">{{ group.name }}</option>\n }\n </select>\n }\n <div class=\"form-text\">\n Assign this table to a lab group for shared access, or leave unassigned for personal use.\n </div>\n </div>\n\n <!-- Table Status Info (Read-only) -->\n @if (table) {\n <div class=\"mb-3\">\n <label class=\"form-label\">Current Status</label>\n <div class=\"d-flex gap-2\">\n @if (table.isLocked) {\n <span class=\"badge bg-warning\">\n <i class=\"bi bi-lock me-1\"></i>Locked\n </span>\n } @else {\n <span class=\"badge bg-success\">\n <i class=\"bi bi-unlock me-1\"></i>Unlocked\n </span>\n }\n @if (table.isPublished) {\n <span class=\"badge bg-info\">\n <i class=\"bi bi-check-circle me-1\"></i>Published\n </span>\n } @else {\n <span class=\"badge bg-secondary\">\n <i class=\"bi bi-clock me-1\"></i>Draft\n </span>\n }\n </div>\n <div class=\"form-text\">\n Lock status and publication state can be managed through advanced options.\n </div>\n </div>\n }\n\n <!-- Character Count -->\n <div class=\"mb-2\">\n <div class=\"d-flex justify-content-between align-items-center\">\n <small class=\"text-muted\">\n Name: {{ editForm.get('name')?.value?.length \|\| 0 }}/255 characters\n </small>\n @if (hasChanges) {\n <small class=\"text-info\">\n <i class=\"bi bi-info-circle me-1\"></i>Changes detected\n </small>\n }\n </div>\n </div>\n\n </form>\n</div>\n\n<div class=\"modal-footer\">\n <button type=\"button\" class=\"btn btn-outline-secondary\" (click)=\"onCancel()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n <button\n type=\"button\"\n class=\"btn btn-primary\"\n (click)=\"onSubmit()\"\n [disabled]=\"editForm.invalid \|\| isLoading() \|\| (!isCreateMode && !hasChanges)\">\n @if (isLoading()) {\n <span class=\"spinner-border spinner-border-sm me-2\"></span>\n }\n @if (isCreateMode) {\n <i class=\"bi bi-plus-circle me-1\"></i>\n Create Table\n } @else {\n <i class=\"bi bi-check-circle me-1\"></i>\n Save Changes\n }\n </button>\n</div>\n","import { Component, Input, Output, EventEmitter, OnInit, signal } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators, FormsModule } from '@angular/forms';\nimport { NgbActiveModal, NgbModule, NgbModal } from '@ng-bootstrap/ng-bootstrap';\nimport { MetadataColumn, PaginatedResponse, MetadataColumnTemplate, ONTOLOGY_TYPE_CONFIGS, COLUMN_TYPE_CONFIGS, OntologyTypeConfig, ColumnTypeConfig, ColumnType, OntologyType, OFFICIAL_SDRF_COLUMNS, SdrfColumnConfig, getSdrfColumnsByCategory, getSdrfColumnByName } from '../../../models';\nimport { MetadataValueEditModal, MetadataValueEditConfig } from '../../metadata-value-edit-modal/metadata-value-edit-modal';\nimport { MetadataColumnTemplateService, MetadataColumnTemplateQueryParams } from '../../../services/metadata-column-template';\nimport { SdrfSyntaxService } from '../../../services/sdrf-syntax';\n\n@Component({\n selector: 'ccv-column-edit-modal',\n imports: [CommonModule, ReactiveFormsModule, FormsModule, NgbModule],\n templateUrl: './column-edit-modal.html',\n styleUrl: './column-edit-modal.scss'\n})\nexport class ColumnEditModal implements OnInit {\n @Input() column: MetadataColumn \| null = null;\n @Input() templateId: number \| null = null; // Add template ID for API calls\n @Input() isEdit = false;\n @Output() columnSaved = new EventEmitter<Partial<MetadataColumn>>();\n\n editForm: FormGroup;\n isLoading = signal(false);\n showAdvancedMode = signal(false);\n\n // Selected ontology configuration (includes custom filters)\n selectedOntologyConfig: OntologyTypeConfig \| null = null;\n\n // Available options for dropdowns from library\n columnTypes: ColumnTypeConfig[] = COLUMN_TYPE_CONFIGS;\n ontologyTypes: OntologyTypeConfig[] = ONTOLOGY_TYPE_CONFIGS;\n\n // Template selection properties\n templateFilter = '';\n selectedTemplateId: number \| string = '';\n selectedTemplate: MetadataColumnTemplate \| null = null;\n templates: MetadataColumnTemplate[] = [];\n isLoadingTemplates = false;\n\n // Pagination\n currentTemplatePage = 1;\n templatePageSize = 5;\n totalTemplates = 0;\n totalTemplatePages = 0;\n Math = Math;\n\n // Official SDRF column configurations from library\n officialSdrfColumns: SdrfColumnConfig[] = OFFICIAL_SDRF_COLUMNS;\n\n // Column selection mode\n showOfficialColumns = false;\n selectedOfficialColumn: SdrfColumnConfig \| null = null;\n availableOfficialColumns: SdrfColumnConfig[] = [];\n\n // Template swapping for existing columns\n showTemplateSwap = false;\n showCreateCustomTemplate = false;\n\n constructor(\n private fb: FormBuilder,\n private activeModal: NgbActiveModal,\n private modalService: NgbModal,\n private metadataColumnTemplateService: MetadataColumnTemplateService,\n private sdrfSyntaxService: SdrfSyntaxService\n ) {\n this.editForm = this.fb.group({\n name: ['', [Validators.required, Validators.minLength(1)]],\n type: [ColumnType.CHARACTERISTICS, Validators.required],\n value: [''],\n ontologyType: ['0'],\n enableTypeahead: [false],\n mandatory: [false],\n hidden: [false],\n readonly: [false],\n notApplicable: [false]\n });\n }\n\n ngOnInit() {\n // Always disable name and type fields since they're managed through templates\n this.editForm.get('name')?.disable();\n this.editForm.get('type')?.disable();\n\n if (this.column && this.isEdit) {\n this.populateForm();\n }\n\n if (!this.isEdit) {\n this.loadColumnTemplates();\n }\n }\n\n private populateForm() {\n if (this.column) {\n const ontologyTypeIndex = this.column.ontologyType\n ? this.ontologyTypes.findIndex(o => o.value === this.column!.ontologyType)\n : 0;\n\n this.editForm.patchValue({\n name: this.column.name,\n type: this.getCorrectedColumnType(this.column.name, this.column.type),\n value: this.column.value \|\| '',\n ontologyType: ontologyTypeIndex >= 0 ? ontologyTypeIndex.toString() : '0',\n enableTypeahead: this.column.enableTypeahead \|\| false,\n mandatory: this.column.mandatory \|\| false,\n hidden: this.column.hidden \|\| false,\n readonly: this.column.readonly \|\| false,\n notApplicable: this.column.notApplicable \|\| false\n });\n }\n }\n\n onSubmit() {\n // For new columns, require either template or official column selection\n if (!this.isEdit && !this.selectedTemplate && !this.selectedOfficialColumn) {\n alert('Please select from official SDRF columns or choose an existing template before proceeding.');\n return;\n }\n\n if (this.editForm.valid) {\n this.isLoading.set(true);\n const formValue = this.editForm.getRawValue();\n\n const ontologyTypeIndex = parseInt(formValue.ontologyType);\n const ontologyTypeValue = ontologyTypeIndex > 0 ? this.ontologyTypes[ontologyTypeIndex]?.value as OntologyType : undefined;\n\n const columnData: Partial<MetadataColumn> = {\n name: formValue.name,\n type: formValue.type,\n value: formValue.value \|\| '',\n ontologyType: ontologyTypeValue,\n enableTypeahead: formValue.enableTypeahead \|\| false,\n mandatory: formValue.mandatory \|\| false,\n hidden: formValue.hidden \|\| false,\n readonly: formValue.readonly \|\| false,\n notApplicable: formValue.notApplicable \|\| false\n };\n\n this.columnSaved.emit(columnData);\n } else {\n this.markFormGroupTouched();\n }\n }\n\n private markFormGroupTouched() {\n Object.keys(this.editForm.controls).forEach(key => {\n const control = this.editForm.get(key);\n control?.markAsTouched();\n });\n }\n\n onCancel() {\n this.activeModal.dismiss();\n }\n\n onClose() {\n this.isLoading.set(false);\n this.activeModal.close();\n }\n\n getFieldError(fieldName: string): string {\n const control = this.editForm.get(fieldName);\n if (control?.errors && control.touched) {\n if (control.errors['required']) return `${fieldName} is required`;\n if (control.errors['minlength']) return `${fieldName} must be at least ${control.errors['minlength'].requiredLength} characters`;\n }\n return '';\n }\n\n get title(): string {\n return this.isEdit ? 'Edit Column' : 'Add Column';\n }\n\n get hasOntologyType(): boolean {\n const ontologyTypeIndex = this.editForm.get('ontologyType')?.value;\n return !!(ontologyTypeIndex && ontologyTypeIndex !== '0');\n }\n\n get hasTypeaheadEnabled(): boolean {\n return this.hasOntologyType && this.editForm.get('enableTypeahead')?.value === true;\n }\n\n openValueEditModal(): void {\n // Get custom filters from selected ontology type or template\n let customFilters = this.selectedTemplate?.customOntologyFilters;\n let ontologyType = '';\n\n // If in advanced mode and an ontology type is selected, use its custom filters\n if (this.showAdvancedMode() && this.selectedOntologyConfig) {\n ontologyType = this.selectedOntologyConfig.value;\n if (this.selectedOntologyConfig.customFilters) {\n customFilters = this.selectedOntologyConfig.customFilters;\n }\n }\n\n const config: MetadataValueEditConfig = {\n columnId: this.column?.id,\n columnName: this.editForm.get('name')?.value \|\| 'Column',\n columnType: this.editForm.get('type')?.value \|\| '',\n ontologyType: ontologyType,\n enableTypeahead: this.editForm.get('enableTypeahead')?.value \|\| false,\n currentValue: this.editForm.get('value')?.value \|\| '',\n context: this.isEdit ? 'table' : 'template',\n templateId: this.selectedTemplate?.id \|\| this.templateId \|\| undefined,\n customOntologyFilters: customFilters\n };\n\n const modalRef = this.modalService.open(MetadataValueEditModal, {\n size: 'lg',\n backdrop: 'static'\n });\n\n modalRef.componentInstance.config = config;\n modalRef.componentInstance.valueSaved.subscribe((result: string \| { value: string; sampleIndices: number[] }) => {\n // Extract the actual value from the result\n const newValue = typeof result === 'string' ? result : result.value;\n this.editForm.get('value')?.setValue(newValue);\n this.editForm.get('value')?.markAsTouched();\n modalRef.componentInstance.onClose();\n });\n }\n\n // Template selection methods\n private loadColumnTemplates(): void {\n this.isLoadingTemplates = true;\n const offset = (this.currentTemplatePage - 1) this.templatePageSize;\n const params: MetadataColumnTemplateQueryParams = {\n limit: this.templatePageSize,\n offset: offset,\n isActive: true,\n search: this.templateFilter \|\| undefined\n };\n\n this.metadataColumnTemplateService.getMetadataColumnTemplates(params).subscribe({\n next: (response: PaginatedResponse<MetadataColumnTemplate>) => {\n this.templates = response.results \|\| [];\n this.totalTemplates = response.count \|\| 0;\n this.totalTemplatePages = Math.ceil(this.totalTemplates / this.templatePageSize);\n this.isLoadingTemplates = false;\n },\n error: (error: any) => {\n console.error('Error loading column templates:', error);\n this.isLoadingTemplates = false;\n }\n });\n }\n\n onTemplateFilterChange(): void {\n this.currentTemplatePage = 1;\n this.loadColumnTemplates();\n }\n\n clearTemplateFilter(): void {\n this.templateFilter = '';\n this.currentTemplatePage = 1;\n this.loadColumnTemplates();\n }\n\n onTemplatePageChange(page: number): void {\n this.currentTemplatePage = page;\n this.loadColumnTemplates();\n }\n\n onTemplateSelectionChange(): void {\n if (this.selectedTemplateId) {\n const template = this.templates.find(t => t.id === Number(this.selectedTemplateId));\n if (template) {\n this.selectedTemplate = template;\n\n // Enable controls to update values, then disable again\n this.editForm.get('name')?.enable();\n this.editForm.get('type')?.enable();\n\n // Auto-fill form with template data\n const ontologyTypeIndex = template.ontologyType\n ? this.ontologyTypes.findIndex(o => o.value === template.ontologyType)\n : 0;\n\n this.editForm.patchValue({\n name: template.columnName,\n type: template.columnType,\n value: template.defaultValue \|\| '',\n ontologyType: ontologyTypeIndex >= 0 ? ontologyTypeIndex.toString() : '0',\n enableTypeahead: template.enableTypeahead \|\| false,\n mandatory: false,\n hidden: false,\n readonly: false,\n notApplicable: false\n });\n\n // Disable controls again\n this.editForm.get('name')?.disable();\n this.editForm.get('type')?.disable();\n\n // Mark form as touched to trigger validation display\n Object.keys(this.editForm.controls).forEach(key => {\n this.editForm.get(key)?.markAsTouched();\n });\n }\n } else {\n this.clearTemplate();\n }\n }\n\n clearTemplate(): void {\n this.selectedTemplate = null;\n this.selectedTemplateId = '';\n\n // Enable controls to reset values, then disable again\n this.editForm.get('name')?.enable();\n this.editForm.get('type')?.enable();\n\n // Reset form to default values\n this.editForm.reset({\n name: '',\n type: ColumnType.CHARACTERISTICS,\n value: '',\n ontologyType: '0',\n enableTypeahead: false,\n mandatory: false,\n hidden: false,\n readonly: false,\n notApplicable: false\n });\n\n // Disable controls again\n this.editForm.get('name')?.disable();\n this.editForm.get('type')?.disable();\n }\n\n getOntologyTypeLabel(ontologyType: string): string {\n const ontology = this.ontologyTypes.find(o => o.value === ontologyType);\n return ontology ? ontology.label : ontologyType;\n }\n\n // Official column selection methods\n toggleOfficialColumns(): void {\n this.showOfficialColumns = !this.showOfficialColumns;\n if (this.showOfficialColumns) {\n this.filterOfficialColumns();\n }\n }\n\n selectOfficialColumn(column: SdrfColumnConfig): void {\n this.selectedOfficialColumn = column;\n\n // Enable controls to update values, then disable again\n this.editForm.get('name')?.enable();\n this.editForm.get('type')?.enable();\n\n const ontologyTypeValue = this.getDefaultOntologyTypeForColumn(column.name);\n const ontologyTypeIndex = ontologyTypeValue\n ? this.ontologyTypes.findIndex(o => o.value === ontologyTypeValue)\n : 0;\n\n this.editForm.patchValue({\n name: column.name,\n type: column.type,\n value: '',\n ontologyType: ontologyTypeIndex >= 0 ? ontologyTypeIndex.toString() : '0',\n enableTypeahead: this.shouldEnableTypeaheadForColumn(column.name),\n mandatory: this.isColumnMandatory(column.name),\n hidden: false,\n readonly: false,\n notApplicable: false\n });\n\n // Disable controls again\n this.editForm.get('name')?.disable();\n this.editForm.get('type')?.disable();\n\n // Mark form as touched\n Object.keys(this.editForm.controls).forEach(key => {\n this.editForm.get(key)?.markAsTouched();\n });\n\n this.showOfficialColumns = false;\n }\n\n private filterOfficialColumns(): void {\n // Filter out columns that already have templates with the same name\n this.availableOfficialColumns = this.officialSdrfColumns.filter(officialCol => {\n return !this.templates.some(template =>\n template.columnName.toLowerCase() === officialCol.name.toLowerCase()\n );\n });\n }\n\n private getDefaultOntologyTypeForColumn(columnName: string): string {\n const lowerName = columnName.toLowerCase();\n\n // Based on backend configure_ontology_options method - use exact matches\n switch (lowerName) {\n case 'characteristics[organism]':\n return 'species';\n case 'characteristics[disease]':\n return 'human_disease';\n case 'characteristics[organism part]':\n return 'tissue';\n case 'characteristics[cell type]':\n return 'cell_ontology';\n case 'comment[instrument]':\n return 'ms_unique_vocabularies';\n case 'comment[modification parameters]':\n return 'unimod';\n case 'comment[ms2 analyzer type]':\n return 'ms_unique_vocabularies';\n case 'comment[cleavage agent details]':\n return 'ms_unique_vocabularies';\n case 'characteristics[ancestry category]':\n return 'ms_unique_vocabularies';\n case 'characteristics[sex]':\n return 'ms_unique_vocabularies';\n case 'characteristics[developmental stage]':\n return 'ms_unique_vocabularies';\n case 'comment[label]':\n return 'ms_unique_vocabularies';\n default:\n return '';\n }\n }\n\n private shouldEnableTypeaheadForColumn(columnName: string): boolean {\n const ontologyType = this.getDefaultOntologyTypeForColumn(columnName);\n return ontologyType.length > 0;\n }\n\n private isColumnMandatory(columnName: string): boolean {\n const lowerName = columnName.toLowerCase();\n\n switch (lowerName) {\n case 'source name':\n case 'characteristics[organism]':\n case 'characteristics[disease]':\n case 'characteristics[organism part]':\n case 'characteristics[cell type]':\n case 'assay name':\n case 'comment[fraction identifier]':\n case 'comment[label]':\n case 'comment[data file]':\n case 'comment[instrument]':\n case 'comment[technical replicate]':\n case 'characteristics[biological replicate]':\n return true;\n default:\n return false;\n }\n }\n\n\n // Template swapping methods\n showTemplateSwapOptions(): void {\n if (!this.isEdit) return;\n\n this.showTemplateSwap = true;\n this.loadColumnTemplates();\n }\n\n swapToTemplate(template: MetadataColumnTemplate): void {\n this.selectedTemplate = template;\n this.selectedTemplateId = template.id;\n\n // Update form with template data, preserving current value\n const currentValue = this.editForm.get('value')?.value \|\| '';\n\n // Enable controls to update values, then disable again\n this.editForm.get('name')?.enable();\n this.editForm.get('type')?.enable();\n\n const ontologyTypeIndex = template.ontologyType\n ? this.ontologyTypes.findIndex(o => o.value === template.ontologyType)\n : 0;\n\n this.editForm.patchValue({\n name: template.columnName,\n type: template.columnType,\n value: currentValue,\n ontologyType: ontologyTypeIndex >= 0 ? ontologyTypeIndex.toString() : '0',\n enableTypeahead: template.enableTypeahead \|\| false,\n mandatory: this.editForm.get('mandatory')?.value \|\| false,\n hidden: this.editForm.get('hidden')?.value \|\| false,\n readonly: this.editForm.get('readonly')?.value \|\| false,\n notApplicable: this.editForm.get('notApplicable')?.value \|\| false\n });\n\n // Disable controls again\n this.editForm.get('name')?.disable();\n this.editForm.get('type')?.disable();\n\n // Mark form as touched\n Object.keys(this.editForm.controls).forEach(key => {\n this.editForm.get(key)?.markAsTouched();\n });\n\n this.showTemplateSwap = false;\n }\n\n showCreateCustomTemplateOption(): void {\n this.showCreateCustomTemplate = true;\n }\n\n createCustomTemplate(): void {\n // This would open a new modal to create a custom template\n // For now, we'll just enable manual editing\n this.editForm.get('name')?.enable();\n this.showCreateCustomTemplate = false;\n\n // Show info message\n alert('Custom template creation would open a new dialog. For now, you can manually edit the column name.');\n }\n\n cancelTemplateSwap(): void {\n this.showTemplateSwap = false;\n this.showCreateCustomTemplate = false;\n }\n\n // Toggle advanced mode\n toggleAdvancedMode(): void {\n this.showAdvancedMode.set(!this.showAdvancedMode());\n\n // Reset ontology type when disabling advanced mode\n if (!this.showAdvancedMode()) {\n this.editForm.patchValue({\n ontologyType: '0',\n enableTypeahead: false\n });\n this.selectedOntologyConfig = null;\n }\n }\n\n // Handle ontology type selection change\n onOntologyTypeChange(event: Event): void {\n const selectElement = event.target as HTMLSelectElement;\n const selectedIndex = parseInt(selectElement.value);\n this.selectedOntologyConfig = this.ontologyTypes[selectedIndex] \|\| null;\n }\n\n private getCorrectedColumnType(columnName: string, columnType: string): string {\n const syntaxType = this.sdrfSyntaxService.detectSpecialSyntax(columnName, columnType);\n if (syntaxType) {\n // Return a specific type based on SDRF syntax detection\n switch (syntaxType) {\n case 'age':\n return 'characteristics[age]';\n case 'modification':\n return 'comment[modification parameters]';\n case 'cleavage':\n return 'comment[cleavage agent details]';\n case 'spiked_compound':\n return 'characteristics[spiked compound]';\n default:\n return columnType;\n }\n }\n return columnType;\n }\n}\n","<div class=\"modal-header\">\n <h4 class=\"modal-title\">\n <i class=\"bi bi-columns-gap me-2\"></i>{{ title }}\n </h4>\n <button type=\"button\" class=\"btn-close\" (click)=\"onCancel()\"></button>\n</div>\n\n<div class=\"modal-body\">\n <form [formGroup]=\"editForm\" (ngSubmit)=\"onSubmit()\">\n <div class=\"row\">\n <!-- Selection Required Notice for New Columns -->\n @if (!isEdit) {\n <div class=\"col-12 mb-3\">\n <div class=\"alert alert-warning\">\n <h6 class=\"alert-heading\">\n <i class=\"bi bi-exclamation-triangle me-2\"></i>Column Selection Required\n </h6>\n <p class=\"mb-0\">\n You must select from official SDRF columns or existing templates to ensure data compliance and consistency.\n </p>\n </div>\n </div>\n }\n\n <!-- Official SDRF Columns -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-file-earmark-check me-2\"></i>Official SDRF Columns\n <small class=\"text-muted ms-2\">\n @if (!isEdit) {\n (Step 1: Select from standardized SDRF-Proteomics column names)\n } @else {\n (Recommended - select from standardized SDRF-Proteomics column names)\n }\n </small>\n </h6>\n </div>\n\n @if (!isEdit) {\n <div class=\"col-12 mb-3\">\n @if (!showOfficialColumns) {\n <button\n type=\"button\"\n class=\"btn btn-primary mb-3\"\n (click)=\"toggleOfficialColumns()\">\n <i class=\"bi bi-list-ul me-2\"></i>\n Select from Official SDRF Columns\n </button>\n } @else {\n <button\n type=\"button\"\n class=\"btn btn-outline-secondary mb-3\"\n (click)=\"toggleOfficialColumns()\">\n <i class=\"bi bi-x me-2\"></i>\n Hide Official Columns\n </button>\n }\n </div>\n } @else {\n <div class=\"col-12 mb-3\">\n <button\n type=\"button\"\n class=\"btn btn-outline-info mb-3\"\n (click)=\"toggleOfficialColumns()\">\n <i class=\"bi bi-list-ul me-2\"></i>\n {{ showOfficialColumns ? 'Hide' : 'Show' }} Official Column Names\n </button>\n </div>\n }\n\n @if (showOfficialColumns) {\n <div class=\"col-12 mb-3\">\n <div class=\"border rounded p-3\">\n <p class=\"mb-3 text-muted\">\n <i class=\"bi bi-info-circle me-2\"></i>\n Select from official SDRF-Proteomics column names. Only columns without existing templates are shown.\n </p>\n\n @if (availableOfficialColumns.length === 0) {\n <div class=\"alert alert-warning\">\n <i class=\"bi bi-exclamation-triangle me-2\"></i>\n All official SDRF columns already have templates created.\n </div>\n } @else {\n <div class=\"row\">\n @for (column of availableOfficialColumns; track column.name) {\n <div class=\"col-md-6 mb-2\">\n <div class=\"card h-100 cursor-pointer border-info\"\n (click)=\"selectOfficialColumn(column)\"\n [class.border-primary]=\"selectedOfficialColumn?.name === column.name\">\n <div class=\"card-body py-2\">\n <h6 class=\"card-title mb-1 font-monospace\">\n {{ column.name }}\n </h6>\n <p class=\"card-text small mb-1\">\n <span class=\"badge\"\n [class]=\"column.type === 'characteristics' ? 'bg-primary' :\n column.type === 'comment' ? 'bg-success' :\n column.type === 'factor_value' ? 'bg-warning' : 'bg-secondary'\">\n {{ column.type }}\n </span>\n </p>\n <p class=\"card-text small mb-0\">{{ column.description }}</p>\n </div>\n </div>\n </div>\n }\n </div>\n }\n </div>\n </div>\n }\n\n <!-- Template Swapping for Edit Mode -->\n @if (isEdit && showTemplateSwap) {\n <div class=\"col-12 mb-3\">\n <div class=\"alert alert-info\">\n <h6 class=\"alert-heading\">\n <i class=\"bi bi-arrow-left-right me-2\"></i>Swap to Different Template\n </h6>\n <p class=\"mb-3\">\n Choose a different template to change the column name and settings. Your current value will be preserved.\n </p>\n\n <div class=\"mb-3\">\n <input\n type=\"text\"\n class=\"form-control mb-2\"\n placeholder=\"Search templates...\"\n [(ngModel)]=\"templateFilter\"\n [ngModelOptions]=\"{standalone: true}\"\n (input)=\"onTemplateFilterChange()\">\n\n <select\n class=\"form-select mb-3\"\n size=\"4\"\n [disabled]=\"isLoadingTemplates\">\n @if (isLoadingTemplates) {\n <option value=\"\" disabled>Loading templates...</option>\n } @else {\n @for (template of templates; track template.id) {\n <option\n [value]=\"template.id\"\n (click)=\"swapToTemplate(template)\"\n style=\"cursor: pointer;\">\n {{ template.columnName }} - {{ template.columnType }}@if (template.ontologyType) { ({{ getOntologyTypeLabel(template.ontologyType) }})}\n </option>\n }\n }\n </select>\n </div>\n\n <div class=\"d-flex justify-content-between\">\n <button\n type=\"button\"\n class=\"btn btn-success\"\n (click)=\"showCreateCustomTemplateOption()\">\n <i class=\"bi bi-plus-circle me-1\"></i>Create Custom Template\n </button>\n <button\n type=\"button\"\n class=\"btn btn-secondary\"\n (click)=\"cancelTemplateSwap()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n </div>\n </div>\n </div>\n }\n\n <!-- Custom Template Creation Option -->\n @if (isEdit && showCreateCustomTemplate) {\n <div class=\"col-12 mb-3\">\n <div class=\"alert alert-warning\">\n <h6 class=\"alert-heading\">\n <i class=\"bi bi-plus-circle me-2\"></i>Create Custom Template\n </h6>\n <p class=\"mb-3\">\n This will create a new custom template with your desired column name and settings.\n </p>\n\n <div class=\"d-flex justify-content-between\">\n <button\n type=\"button\"\n class=\"btn btn-warning\"\n (click)=\"createCustomTemplate()\">\n <i class=\"bi bi-gear me-1\"></i>Create & Apply Template\n </button>\n <button\n type=\"button\"\n class=\"btn btn-secondary\"\n (click)=\"cancelTemplateSwap()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n </div>\n </div>\n </div>\n }\n\n <!-- Template Selection -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-file-earmark-text me-2\"></i>Template Selection\n <small class=\"text-muted ms-2\">\n @if (!isEdit) {\n (Step 2: Or select from existing templates)\n } @else {\n (Optional - select a template to auto-fill column settings)\n }\n </small>\n </h6>\n </div>\n\n <div class=\"col-12 mb-3\">\n <div class=\"input-group mb-3\">\n <span class=\"input-group-text\">\n <i class=\"bi bi-search\"></i>\n </span>\n <input \n type=\"text\" \n class=\"form-control\" \n placeholder=\"Search column templates...\"\n [(ngModel)]=\"templateFilter\"\n [ngModelOptions]=\"{standalone: true}\"\n (input)=\"onTemplateFilterChange()\">\n @if (templateFilter) {\n <button class=\"btn btn-outline-secondary\" type=\"button\" (click)=\"clearTemplateFilter()\">\n <i class=\"bi bi-x\"></i>\n </button>\n }\n </div>\n\n <select \n class=\"form-select mb-3\"\n size=\"5\"\n [(ngModel)]=\"selectedTemplateId\"\n [ngModelOptions]=\"{standalone: true}\"\n (change)=\"onTemplateSelectionChange()\"\n [disabled]=\"isLoadingTemplates\">\n <option value=\"\">No template selected</option>\n @if (isLoadingTemplates) {\n <option value=\"\" disabled>Loading templates...</option>\n } @else {\n @for (template of templates; track template.id) {\n <option [value]=\"template.id\">\n {{ template.columnName }} - {{ template.columnType }}@if (template.ontologyType) { ({{ getOntologyTypeLabel(template.ontologyType) }})}\n </option>\n }\n }\n </select>\n\n @if (totalTemplatePages > 1) {\n <div class=\"d-flex justify-content-between align-items-center\">\n <small class=\"text-muted\">\n Showing {{ (currentTemplatePage - 1) * templatePageSize + 1 }}-{{ Math.min(currentTemplatePage * templatePageSize, totalTemplates) }}\n of {{ totalTemplates }}\n </small>\n <ngb-pagination\n [collectionSize]=\"totalTemplates\"\n [page]=\"currentTemplatePage\"\n [pageSize]=\"templatePageSize\"\n [maxSize]=\"3\"\n [boundaryLinks]=\"true\"\n [rotate]=\"true\"\n (pageChange)=\"onTemplatePageChange($event)\"\n class=\"pagination-sm mb-0\">\n </ngb-pagination>\n </div>\n }\n\n @if (selectedTemplate) {\n <div class=\"alert alert-info mt-3\">\n <i class=\"bi bi-info-circle me-2\"></i>\n Template \"{{ selectedTemplate.name }}\" selected. Settings will be applied automatically.\n <button type=\"button\" class=\"btn btn-sm btn-outline-info float-end\" (click)=\"clearTemplate()\">\n Clear Selection\n </button>\n </div>\n }\n </div>\n\n <!-- Manual Entry -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-pencil me-2\"></i>Column Details\n @if (selectedTemplate) {\n <small class=\"text-muted ms-2\">(Auto-filled from template - you can modify as needed)</small>\n }\n </h6>\n </div>\n \n <div class=\"col-12 mb-3\">\n <label for=\"columnName\" class=\"form-label\">\n Column Name \n <span class=\"text-muted ms-2\">\n <i class=\"bi bi-info-circle\"></i>\n Column names are managed through templates\n </span>\n </label>\n <div class=\"input-group\">\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"columnName\"\n formControlName=\"name\"\n [class.is-invalid]=\"editForm.get('name')?.invalid && editForm.get('name')?.touched\"\n readonly\n placeholder=\"Select from official columns or templates below\">\n @if (isEdit) {\n <button\n type=\"button\"\n class=\"btn btn-outline-secondary\"\n (click)=\"showTemplateSwapOptions()\"\n title=\"Change to different template\">\n <i class=\"bi bi-arrow-left-right\"></i> Swap Template\n </button>\n }\n </div>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>\n @if (isEdit) {\n To change the column name, swap to a different template or create a new custom template.\n } @else {\n Select from official SDRF columns or existing templates below to ensure compliance.\n }\n </div>\n </div>\n\n <div class=\"col-md-6 mb-3\">\n <label for=\"columnType\" class=\"form-label\">\n Column Type \n <span class=\"text-muted ms-2\">\n <i class=\"bi bi-info-circle\"></i>\n Managed through templates\n </span>\n </label>\n <select\n class=\"form-select\"\n id=\"columnType\"\n formControlName=\"type\"\n [class.is-invalid]=\"editForm.get('type')?.invalid && editForm.get('type')?.touched\">\n @for (type of columnTypes; track type.value) {\n <option [value]=\"type.value\">{{ type.label }}</option>\n }\n </select>\n </div>\n\n <!-- Advanced Mode Toggle -->\n <div class=\"col-12 mb-3\">\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"advancedMode\"\n [checked]=\"showAdvancedMode()\"\n (change)=\"toggleAdvancedMode()\">\n <label class=\"form-check-label\" for=\"advancedMode\">\n <i class=\"bi bi-gear me-1\"></i>Advanced Mode\n </label>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>\n Show advanced options for ontology configuration and column settings\n </div>\n </div>\n </div>\n\n @if (showAdvancedMode()) {\n <div class=\"col-md-6 mb-3\">\n <label for=\"ontologyType\" class=\"form-label\">\n Ontology Type\n <span class=\"badge bg-warning ms-2\">\n <i class=\"bi bi-exclamation-triangle me-1\"></i>Advanced\n </span>\n </label>\n <select\n class=\"form-select\"\n id=\"ontologyType\"\n formControlName=\"ontologyType\"\n (change)=\"onOntologyTypeChange($event)\">\n @for (ontology of ontologyTypes; track $index) {\n <option [value]=\"$index\">{{ ontology.label }}</option>\n }\n </select>\n\n @if (hasOntologyType) {\n <div class=\"form-text mt-2\">\n <i class=\"bi bi-info-circle me-1\"></i>\n Custom ontology filters will be applied based on the selected type\n </div>\n }\n </div>\n\n @if (hasOntologyType) {\n <div class=\"col-12 mb-3\">\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"enableTypeahead\"\n formControlName=\"enableTypeahead\">\n <label class=\"form-check-label\" for=\"enableTypeahead\">\n <i class=\"bi bi-search me-1\"></i>Enable Typeahead Autocomplete\n </label>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>\n Enable autocomplete suggestions from {{ selectedOntologyConfig?.label \|\| 'selected' }} ontology when editing values\n </div>\n </div>\n </div>\n }\n\n <!-- Column Options - Advanced Mode Only -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-sliders me-2\"></i>Column Options\n <span class=\"badge bg-warning ms-2\">\n <i class=\"bi bi-exclamation-triangle me-1\"></i>Advanced\n </span>\n </h6>\n </div>\n\n <div class=\"col-12 mb-3\">\n <div class=\"row\">\n <div class=\"col-md-3\">\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"mandatory\"\n formControlName=\"mandatory\">\n <label class=\"form-check-label\" for=\"mandatory\">\n <i class=\"bi bi-exclamation-circle me-1\"></i>Mandatory\n </label>\n </div>\n </div>\n <div class=\"col-md-3\">\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"hidden\"\n formControlName=\"hidden\">\n <label class=\"form-check-label\" for=\"hidden\">\n <i class=\"bi bi-eye-slash me-1\"></i>Hidden\n </label>\n </div>\n </div>\n <div class=\"col-md-3\">\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"readonly\"\n formControlName=\"readonly\">\n <label class=\"form-check-label\" for=\"readonly\">\n <i class=\"bi bi-lock me-1\"></i>Read Only\n </label>\n </div>\n </div>\n <div class=\"col-md-3\">\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"notApplicable\"\n formControlName=\"notApplicable\">\n <label class=\"form-check-label\" for=\"notApplicable\">\n <i class=\"bi bi-dash-circle me-1\"></i>N/A\n </label>\n </div>\n </div>\n </div>\n </div>\n }\n\n <div class=\"col-12 mb-3\">\n <label for=\"defaultValue\" class=\"form-label\">\n Default Value\n @if (hasTypeaheadEnabled) {\n <span class=\"badge bg-success ms-2\">\n <i class=\"bi bi-search me-1\"></i>Typeahead Enabled\n </span>\n }\n </label>\n \n <div class=\"input-group\">\n <input \n type=\"text\" \n class=\"form-control\"\n id=\"defaultValue\"\n formControlName=\"value\"\n placeholder=\"Enter default value\"\n readonly>\n <button \n type=\"button\" \n class=\"btn btn-outline-primary\"\n (click)=\"openValueEditModal()\"\n title=\"Open advanced value editor\">\n <i class=\"bi bi-pencil me-1\"></i>Edit\n </button>\n </div>\n \n <div class=\"form-text\">\n @if (hasTypeaheadEnabled) {\n <i class=\"bi bi-info-circle me-1\"></i>\n Click \"Edit\" to use autocomplete suggestions from {{ selectedOntologyConfig?.label \|\| 'selected' }} ontology\n } @else if (hasOntologyType) {\n <i class=\"bi bi-info-circle me-1\"></i>\n Click \"Edit\" to set default value. Enable typeahead in Advanced Mode for autocomplete suggestions.\n } @else if (showAdvancedMode()) {\n <i class=\"bi bi-info-circle me-1\"></i>\n Click \"Edit\" to set the default value (select an ontology type above for smart suggestions)\n } @else {\n <i class=\"bi bi-info-circle me-1\"></i>\n Click \"Edit\" to set the default value (enable Advanced Mode for ontology autocomplete)\n }\n </div>\n </div>\n\n </div>\n </form>\n</div>\n\n<div class=\"modal-footer\">\n <button type=\"button\" class=\"btn btn-outline-secondary\" (click)=\"onCancel()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n <button \n type=\"button\" \n class=\"btn btn-primary\" \n (click)=\"onSubmit()\"\n [disabled]=\"editForm.invalid \|\| isLoading()\">\n @if (isLoading()) {\n <span class=\"spinner-border spinner-border-sm me-2\"></span>\n }\n <i class=\"bi bi-check-circle me-1\"></i>\n {{ isEdit ? 'Update' : 'Add' }} Column\n </button>\n</div>\n","import { Component, Input, Output, EventEmitter, OnInit, signal, computed } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbActiveModal, NgbModule, NgbModal } from '@ng-bootstrap/ng-bootstrap';\nimport { DragDropModule, CdkDragDrop, moveItemInArray } from '@angular/cdk/drag-drop';\nimport { LabGroup, ResourceVisibility } from '@noatgnu/cupcake-core';\nimport { MetadataTableTemplate, MetadataColumn } from '../../../models';\nimport { MetadataTableTemplateService } from '../../../services/metadata-table-template';\nimport { ColumnEditModal } from '../column-edit-modal/column-edit-modal';\nimport { ToastService } from '@noatgnu/cupcake-core';\n\n@Component({\n selector: 'ccv-metadata-table-template-edit-modal',\n imports: [CommonModule, ReactiveFormsModule, NgbModule, DragDropModule],\n templateUrl: './metadata-table-template-edit-modal.html',\n styleUrl: './metadata-table-template-edit-modal.scss'\n})\nexport class MetadataTableTemplateEditModal implements OnInit {\n @Input() template: MetadataTableTemplate \| null = null;\n @Input() labGroups: LabGroup[] = [];\n @Input() isEdit = false;\n @Output() templateSaved = new EventEmitter<Partial<MetadataTableTemplate>>();\n\n editForm: FormGroup;\n isLoading = signal(false);\n \n // Column management\n _templateColumns = signal<MetadataColumn[]>([]);\n templateColumns = computed(() => {\n // Sort columns by position, then by name+type for grouping same columns together\n return this._templateColumns().sort((a, b) => {\n if (a.columnPosition !== b.columnPosition) {\n return (a.columnPosition \|\| 0) - (b.columnPosition \|\| 0);\n }\n // Secondary sort: group columns with same name and type together\n const aKey = `${a.name}_${a.type}`;\n const bKey = `${b.name}_${b.type}`;\n return aKey.localeCompare(bKey);\n });\n });\n\n // Available options for dropdowns\n visibilityOptions = [\n { value: ResourceVisibility.PRIVATE, label: 'Private' },\n { value: ResourceVisibility.GROUP, label: 'Lab Group' },\n { value: ResourceVisibility.PUBLIC, label: 'Public' }\n ];\n\n constructor(\n private fb: FormBuilder,\n private activeModal: NgbActiveModal,\n private modalService: NgbModal,\n private metadataTableTemplateService: MetadataTableTemplateService,\n private toastService: ToastService\n ) {\n this.editForm = this.fb.group({\n name: ['', [Validators.required, Validators.minLength(3)]],\n description: [''],\n visibility: [ResourceVisibility.PRIVATE],\n isDefault: [false],\n labGroupId: [null]\n });\n }\n\n ngOnInit() {\n if (this.template && this.isEdit) {\n this.populateForm();\n }\n }\n\n private populateForm() {\n if (this.template) {\n const labGroupId = this.template.labGroup;\n \n this.editForm.patchValue({\n name: this.template.name,\n description: this.template.description \|\| '',\n visibility: this.template.visibility \|\| ResourceVisibility.PRIVATE,\n isDefault: this.template.isDefault \|\| false,\n labGroupId: labGroupId \|\| null\n });\n \n // Load existing columns if editing\n if (this.template.userColumns) {\n this._templateColumns.set([...this.template.userColumns]);\n }\n }\n }\n\n onSubmit() {\n if (this.editForm.valid) {\n this.isLoading.set(true);\n const formValue = this.editForm.value;\n \n // Clean up form data\n const templateData: Partial<MetadataTableTemplate> = {\n name: formValue.name,\n description: formValue.description \|\| '',\n visibility: formValue.visibility \|\| ResourceVisibility.PRIVATE,\n isDefault: formValue.isDefault \|\| false,\n labGroup: formValue.labGroupId \|\| null,\n // Include updated columns\n userColumns: this._templateColumns(),\n // Keep existing field mapping if editing\n ...(this.template && {\n fieldMaskMapping: this.template.fieldMaskMapping\n })\n };\n\n this.templateSaved.emit(templateData);\n } else {\n this.markFormGroupTouched();\n }\n }\n\n private markFormGroupTouched() {\n Object.keys(this.editForm.controls).forEach(key => {\n const control = this.editForm.get(key);\n control?.markAsTouched();\n });\n }\n\n onCancel() {\n this.activeModal.dismiss();\n }\n\n onClose() {\n this.isLoading.set(false);\n this.activeModal.close();\n }\n\n getFieldError(fieldName: string): string {\n const control = this.editForm.get(fieldName);\n if (control?.errors && control.touched) {\n if (control.errors['required']) return `${fieldName} is required`;\n if (control.errors['minlength']) return `${fieldName} must be at least ${control.errors['minlength'].requiredLength} characters`;\n }\n return '';\n }\n\n get title(): string {\n return this.isEdit ? 'Edit Table Template' : 'Create Table Template';\n }\n\n // Column Management Methods\n\n addColumn() {\n this.openColumnModal(null, false);\n }\n\n addColumnWithAutoReorder() {\n // Only available for existing templates\n if (!this.isEdit \|\| !this.template?.id) {\n this.toastService.error('Auto-reorder is only available for existing templates');\n return;\n }\n this.openColumnModal(null, false, true);\n }\n\n editColumn(column: MetadataColumn) {\n this.openColumnModal(column, true);\n }\n\n duplicateColumn(column: MetadataColumn) {\n const currentColumns = this._templateColumns();\n const newColumn: MetadataColumn = {\n ...column,\n id: this.generateTempId(), // Generate temporary ID for tracking\n name: `${column.name} (Copy)`,\n columnPosition: this.getNextPositionForSameType(column)\n };\n\n // Add the duplicated column right after columns with same name/type\n const updatedColumns = [...currentColumns, newColumn];\n this.normalizeColumnPositions(updatedColumns);\n this._templateColumns.set(updatedColumns);\n }\n\n removeColumn(column: MetadataColumn) {\n const confirmMessage = `Are you sure you want to remove the column \"${column.name}\"?`;\n \n if (confirm(confirmMessage)) {\n const currentColumns = this._templateColumns();\n const updatedColumns = currentColumns.filter(col => col.id !== column.id);\n this.normalizeColumnPositions(updatedColumns);\n this._templateColumns.set(updatedColumns);\n }\n }\n\n onColumnDrop(event: CdkDragDrop<MetadataColumn[]>) {\n // If dropped in the same position, no action needed\n if (event.previousIndex === event.currentIndex) {\n return;\n }\n\n const currentColumns = [...this._templateColumns()];\n \n // Move the item in the array\n moveItemInArray(currentColumns, event.previousIndex, event.currentIndex);\n \n // Normalize positions and ensure same name/type grouping\n this.normalizeColumnPositions(currentColumns);\n this.enforceGrouping(currentColumns);\n \n this._templateColumns.set(currentColumns);\n }\n\n private openColumnModal(column: MetadataColumn \| null, isEdit: boolean, useAutoReorder: boolean = false) {\n const modalRef = this.modalService.open(ColumnEditModal, {\n size: 'lg',\n backdrop: 'static',\n keyboard: false\n });\n\n modalRef.componentInstance.column = column;\n modalRef.componentInstance.templateId = this.template?.id \|\| null;\n modalRef.componentInstance.isEdit = isEdit;\n\n modalRef.componentInstance.columnSaved.subscribe((columnData: Partial<MetadataColumn>) => {\n if (useAutoReorder && this.template?.id) {\n this.handleColumnSaveWithAutoReorder(columnData);\n } else {\n this.handleColumnSave(columnData, column, isEdit);\n }\n modalRef.componentInstance.onClose();\n });\n }\n\n private handleColumnSave(columnData: Partial<MetadataColumn>, originalColumn: MetadataColumn \| null, isEdit: boolean) {\n const currentColumns = this._templateColumns();\n \n if (isEdit && originalColumn) {\n // Update existing column\n const updatedColumns = currentColumns.map(col => \n col.id === originalColumn.id \n ? { ...col, ...columnData }\n : col\n );\n \n // Check if name/type changed and needs regrouping\n if (columnData.name !== originalColumn.name \|\| columnData.type !== originalColumn.type) {\n this.enforceGrouping(updatedColumns);\n }\n \n this.normalizeColumnPositions(updatedColumns);\n this._templateColumns.set(updatedColumns);\n } else {\n // Add new column\n const newColumn: MetadataColumn = {\n ...columnData as MetadataColumn,\n id: this.generateTempId(),\n columnPosition: this.getNextPositionForNameType(columnData.name!, columnData.type!)\n };\n \n const updatedColumns = [...currentColumns, newColumn];\n this.enforceGrouping(updatedColumns);\n this.normalizeColumnPositions(updatedColumns);\n this._templateColumns.set(updatedColumns);\n }\n }\n\n private handleColumnSaveWithAutoReorder(columnData: Partial<MetadataColumn>): void {\n if (!this.template?.id) {\n this.toastService.error('Template ID not found');\n return;\n }\n\n this.isLoading.set(true);\n \n this.metadataTableTemplateService.addColumnWithAutoReorder(this.template.id, {\n columnData: columnData\n }).subscribe({\n next: (response: { message: string; column: any; reordered: boolean; schemaIdsUsed: number[] }) => {\n this.isLoading.set(false);\n \n // Refresh the template data by reloading it\n this.reloadTemplateColumns();\n \n // Show success message with reordering info\n let message = `Column \"${response.column.name}\" added successfully!`;\n if (response.reordered) {\n message += ` Columns reordered using ${response.schemaIdsUsed.length} schema(s).`;\n }\n \n this.toastService.success(message);\n },\n error: (error) => {\n this.isLoading.set(false);\n console.error('Error adding column with auto-reorder:', error);\n this.toastService.error('Failed to add column with auto-reorder');\n }\n });\n }\n\n private reloadTemplateColumns(): void {\n if (this.template?.id) {\n this.metadataTableTemplateService.getMetadataTableTemplate(this.template.id).subscribe({\n next: (updatedTemplate) => {\n this._templateColumns.set([...updatedTemplate.userColumns \|\| []]);\n },\n error: (error) => {\n console.error('Error reloading template columns:', error);\n }\n });\n }\n }\n\n private generateTempId(): number {\n // Generate a temporary negative ID for new columns\n const currentColumns = this._templateColumns();\n const minId = Math.min(0, ...currentColumns.map(col => col.id \|\| 0));\n return minId - 1;\n }\n\n private getNextPositionForSameType(column: MetadataColumn): number {\n const currentColumns = this._templateColumns();\n const sameNameTypeColumns = currentColumns.filter(col => \n col.name === column.name && col.type === column.type\n );\n \n if (sameNameTypeColumns.length === 0) {\n return currentColumns.length;\n }\n \n const maxPosition = Math.max(...sameNameTypeColumns.map(col => col.columnPosition \|\| 0));\n return maxPosition + 1;\n }\n\n private getNextPositionForNameType(name: string, type: string): number {\n const currentColumns = this._templateColumns();\n const sameNameTypeColumns = currentColumns.filter(col => \n col.name === name && col.type === type\n );\n \n if (sameNameTypeColumns.length === 0) {\n return currentColumns.length;\n }\n \n const maxPosition = Math.max(...sameNameTypeColumns.map(col => col.columnPosition \|\| 0));\n return maxPosition + 1;\n }\n\n private normalizeColumnPositions(columns: MetadataColumn[]) {\n columns.forEach((col, index) => {\n col.columnPosition = index;\n });\n }\n\n private enforceGrouping(columns: MetadataColumn[]) {\n // Group columns by name+type and ensure they are together\n const groups = new Map<string, MetadataColumn[]>();\n \n columns.forEach(col => {\n const key = `${col.name}_${col.type}`;\n if (!groups.has(key)) {\n groups.set(key, []);\n }\n groups.get(key)!.push(col);\n });\n \n // Rebuild array with proper grouping\n let position = 0;\n const regroupedColumns: MetadataColumn[] = [];\n \n for (const [key, groupColumns] of groups) {\n // Sort within group by original position to maintain relative order\n groupColumns.sort((a, b) => (a.columnPosition \|\| 0) - (b.columnPosition \|\| 0));\n \n groupColumns.forEach(col => {\n col.columnPosition = position++;\n regroupedColumns.push(col);\n });\n }\n \n // Replace original array contents\n columns.length = 0;\n columns.push(...regroupedColumns);\n }\n}\n","<div class=\"modal-header\">\n <h4 class=\"modal-title\">\n <i class=\"bi bi-file-earmark-text me-2\"></i>{{ title }}\n </h4>\n <button type=\"button\" class=\"btn-close\" (click)=\"onCancel()\"></button>\n</div>\n\n<div class=\"modal-body\">\n <form [formGroup]=\"editForm\" (ngSubmit)=\"onSubmit()\">\n <div class=\"row\">\n <!-- Basic Information -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-info-circle me-2\"></i>Basic Information\n </h6>\n </div>\n \n <div class=\"col-12 mb-3\">\n <label for=\"templateName\" class=\"form-label\">Template Name </label>\n <input \n type=\"text\" \n class=\"form-control\"\n id=\"templateName\"\n formControlName=\"name\"\n [class.is-invalid]=\"editForm.get('name')?.invalid && editForm.get('name')?.touched\"\n placeholder=\"Enter template name\">\n <div class=\"invalid-feedback\">\n {{ getFieldError('name') }}\n </div>\n </div>\n\n <div class=\"col-12 mb-3\">\n <label for=\"description\" class=\"form-label\">Description</label>\n <textarea \n class=\"form-control\" \n id=\"description\"\n formControlName=\"description\"\n rows=\"3\"\n placeholder=\"Optional description\"></textarea>\n </div>\n\n <!-- Configuration -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-gear me-2\"></i>Configuration\n </h6>\n </div>\n\n <div class=\"col-md-6 mb-3\">\n <label for=\"labGroup\" class=\"form-label\">Lab Group</label>\n <select \n class=\"form-select\"\n id=\"labGroup\"\n formControlName=\"labGroupId\">\n <option [ngValue]=\"null\">No Lab Group</option>\n @for (group of labGroups; track group.id) {\n <option [ngValue]=\"group.id\">{{ group.name }}</option>\n }\n </select>\n </div>\n\n <div class=\"col-12 mb-3\">\n <div class=\"row\">\n <div class=\"col-md-6\">\n <label for=\"visibility\" class=\"form-label\">Visibility</label>\n <select \n class=\"form-select\"\n id=\"visibility\"\n formControlName=\"visibility\">\n @for (option of visibilityOptions; track option.value) {\n <option [value]=\"option.value\">{{ option.label }}</option>\n }\n </select>\n </div>\n <div class=\"col-md-6\">\n <div class=\"form-check form-switch\">\n <input \n class=\"form-check-input\" \n type=\"checkbox\" \n id=\"isDefault\"\n formControlName=\"isDefault\">\n <label class=\"form-check-label\" for=\"isDefault\">\n <i class=\"bi bi-star me-1\"></i>Default Template\n </label>\n <small class=\"form-text text-muted d-block\">Use as default for new projects</small>\n </div>\n </div>\n </div>\n </div>\n\n <!-- Column Management -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-columns-gap me-2\"></i>Template Columns\n <button type=\"button\" class=\"btn btn-sm btn-outline-primary ms-2\" (click)=\"addColumn()\">\n <i class=\"bi bi-plus me-1\"></i>Add Column\n </button>\n @if (isEdit && template?.id) {\n <button type=\"button\" class=\"btn btn-sm btn-success ms-2\" (click)=\"addColumnWithAutoReorder()\" \n [disabled]=\"isLoading()\"\n title=\"Add column with automatic schema-based reordering\">\n <i class=\"bi bi-plus-circle me-1\"></i>Add Column (Auto-Reorder)\n </button>\n }\n </h6>\n </div>\n\n <div class=\"col-12 mb-3\">\n @if (templateColumns().length > 0) {\n <div class=\"table-responsive\">\n <table class=\"table table-sm table-hover\">\n <thead class=\"table-light\">\n <tr>\n <th style=\"width: 40px;\"><i class=\"bi bi-arrows-move\"></i></th>\n <th>Position</th>\n <th>Column Name</th>\n <th>Type</th>\n <th>Default Value</th>\n <th>Options</th>\n <th style=\"width: 120px;\">Actions</th>\n </tr>\n </thead>\n <tbody cdkDropList (cdkDropListDropped)=\"onColumnDrop($event)\" [cdkDropListData]=\"_templateColumns()\">\n @for (column of _templateColumns(); track column.id; let i = $index) {\n <tr cdkDrag [cdkDragData]=\"column\" class=\"column-row\" [attr.data-column-id]=\"column.id\">\n <td class=\"text-center\">\n <i class=\"bi bi-grip-vertical drag-handle\" cdkDragHandle></i>\n </td>\n <td>\n <span class=\"badge bg-secondary\">{{ i + 1 }}</span>\n </td>\n <td>\n <strong>{{ column.name }}</strong>\n </td>\n <td>\n <span class=\"badge bg-info\">{{ column.type }}</span>\n </td>\n <td>\n <span class=\"text-muted\">{{ column.value \|\| '-' }}</span>\n </td>\n <td>\n <div class=\"d-flex gap-1\">\n @if (column.mandatory) {\n <span class=\"badge badge-pill bg-warning\" title=\"Mandatory\">\n <i class=\"bi bi-exclamation-circle\"></i>\n </span>\n }\n @if (column.hidden) {\n <span class=\"badge badge-pill bg-secondary\" title=\"Hidden\">\n <i class=\"bi bi-eye-slash\"></i>\n </span>\n }\n @if (column.readonly) {\n <span class=\"badge badge-pill bg-dark\" title=\"Read Only\">\n <i class=\"bi bi-lock\"></i>\n </span>\n }\n @if (column.ontologyType) {\n <span class=\"badge badge-pill bg-success\" title=\"Has Ontology\">\n <i class=\"bi bi-tags\"></i>\n </span>\n }\n </div>\n </td>\n <td>\n <div class=\"btn-group btn-group-sm\" role=\"group\">\n <button \n type=\"button\"\n class=\"btn btn-outline-primary\" \n (click)=\"editColumn(column)\"\n title=\"Edit column\">\n <i class=\"bi bi-pencil\"></i>\n </button>\n <button \n type=\"button\"\n class=\"btn btn-outline-info\" \n (click)=\"duplicateColumn(column)\"\n title=\"Duplicate column\">\n <i class=\"bi bi-copy\"></i>\n </button>\n <button \n type=\"button\"\n class=\"btn btn-outline-danger\" \n (click)=\"removeColumn(column)\"\n title=\"Remove column\">\n <i class=\"bi bi-trash\"></i>\n </button>\n </div>\n </td>\n </tr>\n }\n </tbody>\n </table>\n </div>\n } @else {\n <div class=\"text-center py-4 text-muted\">\n <i class=\"bi bi-columns-gap fs-1 mb-2\"></i>\n <p>No columns in this template yet.</p>\n <div class=\"d-flex gap-2 justify-content-center\">\n <button type=\"button\" class=\"btn btn-primary btn-sm\" (click)=\"addColumn()\">\n <i class=\"bi bi-plus me-1\"></i>Add First Column\n </button>\n @if (isEdit && template?.id) {\n <button type=\"button\" class=\"btn btn-success btn-sm\" (click)=\"addColumnWithAutoReorder()\" \n [disabled]=\"isLoading()\"\n title=\"Add column with automatic schema-based reordering\">\n <i class=\"bi bi-plus-circle me-1\"></i>Add with Auto-Reorder\n </button>\n }\n </div>\n </div>\n }\n </div>\n </div>\n </form>\n</div>\n\n<div class=\"modal-footer\">\n <button type=\"button\" class=\"btn btn-outline-secondary\" (click)=\"onCancel()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n <button \n type=\"button\" \n class=\"btn btn-primary\" \n (click)=\"onSubmit()\"\n [disabled]=\"editForm.invalid \|\| isLoading()\">\n @if (isLoading()) {\n <span class=\"spinner-border spinner-border-sm me-2\"></span>\n }\n <i class=\"bi bi-check-circle me-1\"></i>\n {{ isEdit ? 'Update' : 'Create' }} Template\n </button>\n</div>\n","import { Component, EventEmitter, Input, Output, signal, computed } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbActiveModal, NgbModule } from '@ng-bootstrap/ng-bootstrap';\nimport { ResourceVisibility } from '@noatgnu/cupcake-core';\n\nexport interface TemplateSchemaSelectionResult {\n name: string;\n description: string;\n schemaIds: number[];\n labGroupId?: number;\n visibility: ResourceVisibility;\n isDefault: boolean;\n}\n\n@Component({\n selector: 'ccv-template-schema-selection-modal',\n standalone: true,\n imports: [CommonModule, ReactiveFormsModule, NgbModule],\n templateUrl: './schema-selection-modal.html',\n styleUrl: './schema-selection-modal.scss'\n})\nexport class TemplateSchemaSelectionModal {\n @Input() availableSchemas: any[] = [];\n @Input() labGroups: any[] = [];\n @Output() templateCreated = new EventEmitter<TemplateSchemaSelectionResult>();\n\n templateForm: FormGroup;\n selectedSchemas = signal<Set<number>>(new Set());\n\n // Computed values\n selectedSchemasCount = computed(() => this.selectedSchemas().size);\n\n constructor(\n private fb: FormBuilder,\n public activeModal: NgbActiveModal\n ) {\n this.templateForm = this.fb.group({\n name: ['', [Validators.required, Validators.minLength(1)]],\n description: [''],\n labGroupId: [null],\n visibility: [ResourceVisibility.PRIVATE],\n isDefault: [false]\n });\n }\n\n toggleSchema(schemaId: number) {\n const current = this.selectedSchemas();\n const updated = new Set(current);\n \n if (updated.has(schemaId)) {\n updated.delete(schemaId);\n } else {\n updated.add(schemaId);\n }\n \n this.selectedSchemas.set(updated);\n this.updateDescription();\n }\n\n onSchemaCheckChange(event: Event, schemaId: number) {\n // Prevent event propagation to avoid double-toggle from card click\n event.stopPropagation();\n // Toggle the schema selection when checkbox is clicked\n this.toggleSchema(schemaId);\n }\n\n isSchemaSelected(schemaId: number): boolean {\n return this.selectedSchemas().has(schemaId);\n }\n\n getSelectedSchemas(): number[] {\n return [...this.selectedSchemas()];\n }\n\n removeSchema(schemaId: number) {\n const current = this.selectedSchemas();\n const updated = new Set(current);\n updated.delete(schemaId);\n this.selectedSchemas.set(updated);\n this.updateDescription();\n }\n\n getSchemaDisplayName(schemaId: number): string {\n const schema = this.availableSchemas.find(s => s.id === schemaId);\n return schema?.displayName \|\| schema?.name \|\| `Schema ${schemaId}`;\n }\n\n private updateDescription() {\n const selectedSchemas = this.getSelectedSchemas();\n if (selectedSchemas.length > 0 && !this.templateForm.get('description')?.dirty) {\n const schemaNames = selectedSchemas.map(id => this.getSchemaDisplayName(id)).join(', ');\n this.templateForm.patchValue({\n description: `Template created from schemas: ${schemaNames}`\n });\n }\n }\n\n canCreateTemplate(): boolean {\n const formValid = this.templateForm.valid;\n const hasSchemas = this.selectedSchemasCount() > 0;\n \n // Debug logging\n if (!formValid) {\n console.log('Form errors:', this.templateForm.errors);\n console.log('Form controls errors:', Object.keys(this.templateForm.controls).reduce((acc, key) => {\n const control = this.templateForm.get(key);\n if (control?.errors) {\n acc[key] = control.errors;\n }\n return acc;\n }, {} as any));\n }\n \n console.log('canCreateTemplate:', { formValid, hasSchemas, result: formValid && hasSchemas });\n return formValid && hasSchemas;\n }\n\n onCreateTemplate() {\n if (!this.canCreateTemplate()) {\n // Mark all fields as touched to show validation errors\n this.templateForm.markAllAsTouched();\n return;\n }\n\n const formValue = this.templateForm.value;\n const result: TemplateSchemaSelectionResult = {\n name: formValue.name,\n description: formValue.description \|\| '',\n schemaIds: this.getSelectedSchemas(),\n labGroupId: formValue.labGroupId \|\| undefined,\n visibility: formValue.visibility \|\| ResourceVisibility.PRIVATE,\n isDefault: formValue.isDefault \|\| false\n };\n\n this.templateCreated.emit(result);\n }\n\n onCancel() {\n this.activeModal.dismiss();\n }\n}\n","<div class=\"modal-header\">\n <h4 class=\"modal-title\">\n <i class=\"bi bi-file-earmark-plus me-2\"></i>Create Template from Schemas\n </h4>\n <button\n type=\"button\"\n class=\"btn-close\"\n aria-label=\"Close\"\n (click)=\"onCancel()\">\n </button>\n</div>\n\n<div class=\"modal-body\">\n <form [formGroup]=\"templateForm\" class=\"needs-validation\" novalidate>\n <!-- Template Basic Information -->\n <div class=\"card mb-4\">\n <div class=\"card-header\">\n <h6 class=\"mb-0\">\n <i class=\"bi bi-info-circle me-1\"></i>Template Information\n </h6>\n </div>\n <div class=\"card-body\">\n <div class=\"row\">\n <div class=\"col-12 mb-3\">\n <div class=\"form-floating\">\n <input\n type=\"text\"\n class=\"form-control\"\n [class.is-invalid]=\"templateForm.get('name')?.invalid && templateForm.get('name')?.touched\"\n id=\"templateName\"\n formControlName=\"name\"\n placeholder=\"Enter template name\">\n <label for=\"templateName\">Template Name </label>\n @if (templateForm.get('name')?.invalid && templateForm.get('name')?.touched) {\n <div class=\"invalid-feedback\">\n Template name is required.\n </div>\n }\n </div>\n </div>\n <div class=\"col-12 mb-3\">\n <div class=\"form-floating\">\n <textarea\n class=\"form-control\"\n id=\"templateDescription\"\n formControlName=\"description\"\n style=\"height: 80px\"\n placeholder=\"Enter template description\">\n </textarea>\n <label for=\"templateDescription\">Description</label>\n </div>\n </div>\n </div>\n </div>\n </div>\n\n <!-- Schema Selection -->\n <div class=\"card mb-4\">\n <div class=\"card-header d-flex justify-content-between align-items-center\">\n <h6 class=\"mb-0\">\n <i class=\"bi bi-check2-square me-1\"></i>Select Schemas\n </h6>\n <small class=\"text-muted\">{{ selectedSchemasCount() }} selected</small>\n </div>\n <div class=\"card-body\">\n @if (availableSchemas.length === 0) {\n <div class=\"text-center text-muted py-3\">\n <i class=\"bi bi-exclamation-triangle fs-4 d-block mb-2\"></i>\n No schemas available\n </div>\n } @else {\n <div class=\"row\">\n @for (schema of availableSchemas; track schema.id) {\n <div class=\"col-md-6 mb-2\">\n <div class=\"card schema-card\"\n [class.selected]=\"isSchemaSelected(schema.id)\"\n (click)=\"toggleSchema(schema.id)\">\n <div class=\"card-body p-3\">\n <div class=\"form-check\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n [id]=\"'schema-' + schema.id\"\n [checked]=\"isSchemaSelected(schema.id)\"\n (change)=\"onSchemaCheckChange($event, schema.id)\">\n <label class=\"form-check-label w-100\" [for]=\"'schema-' + schema.id\">\n <div class=\"d-flex justify-content-between align-items-start\">\n <div class=\"flex-grow-1\">\n <strong class=\"schema-title\">{{ schema.displayName }}</strong>\n @if (schema.description) {\n <p class=\"schema-description text-muted small mb-1\">\n {{ schema.description }}\n </p>\n }\n <div class=\"schema-metadata\">\n @if (schema.tags && schema.tags.length > 0) {\n @for (tag of schema.tags; track tag) {\n <span class=\"badge bg-secondary me-1\">{{ tag }}</span>\n }\n }\n @if (schema.usage_count > 0) {\n <small class=\"text-muted\">\n <i class=\"bi bi-graph-up me-1\"></i>{{ schema.usage_count }} uses\n </small>\n }\n </div>\n </div>\n </div>\n </label>\n </div>\n </div>\n </div>\n </div>\n }\n </div>\n\n @if (selectedSchemasCount() === 0) {\n <div class=\"alert alert-warning mt-3\" role=\"alert\">\n <i class=\"bi bi-exclamation-triangle me-2\"></i>\n Please select at least one schema to create a template.\n </div>\n }\n }\n </div>\n </div>\n\n <!-- Template Settings -->\n <div class=\"card mb-4\">\n <div class=\"card-header\">\n <h6 class=\"mb-0\">\n <i class=\"bi bi-gear me-1\"></i>Template Settings\n </h6>\n </div>\n <div class=\"card-body\">\n <div class=\"row\">\n <div class=\"col-md-6 mb-3\">\n <div class=\"form-floating\">\n <select\n class=\"form-select\"\n id=\"labGroup\"\n formControlName=\"labGroupId\">\n <option [ngValue]=\"null\">No Lab Group</option>\n @for (group of labGroups; track group.id) {\n <option [ngValue]=\"group.id\">{{ group.name }}</option>\n }\n </select>\n <label for=\"labGroup\">Lab Group</label>\n </div>\n </div>\n <div class=\"col-md-6\">\n <div class=\"form-check form-switch mb-3\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"isDefault\"\n formControlName=\"isDefault\">\n <label class=\"form-check-label\" for=\"isDefault\">\n <i class=\"bi bi-star me-1\"></i>Default Template\n </label>\n </div>\n </div>\n </div>\n </div>\n </div>\n\n <!-- Preview Section -->\n @if (selectedSchemasCount() > 0) {\n <div class=\"card\">\n <div class=\"card-header\">\n <h6 class=\"mb-0\">\n <i class=\"bi bi-eye me-1\"></i>Selected Schemas Preview\n </h6>\n </div>\n <div class=\"card-body\">\n <div class=\"d-flex flex-wrap gap-2\">\n @for (schemaId of getSelectedSchemas(); track schemaId) {\n <span class=\"badge bg-primary fs-6 py-2 px-3\">\n {{ getSchemaDisplayName(schemaId) }}\n <button\n type=\"button\"\n class=\"btn-close btn-close-white ms-2\"\n style=\"font-size: 0.6em;\"\n (click)=\"removeSchema(schemaId)\"\n [attr.aria-label]=\"'Remove ' + getSchemaDisplayName(schemaId)\">\n </button>\n </span>\n }\n </div>\n <p class=\"text-muted small mt-2 mb-0\">\n This template will combine columns from {{ selectedSchemasCount() }} schema{{ selectedSchemasCount() === 1 ? '' : 's' }}.\n </p>\n </div>\n </div>\n }\n </form>\n</div>\n\n<div class=\"modal-footer\">\n <button\n type=\"button\"\n class=\"btn btn-outline-secondary\"\n (click)=\"onCancel()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n <button\n type=\"button\"\n class=\"btn btn-primary\"\n [disabled]=\"!canCreateTemplate()\"\n (click)=\"onCreateTemplate()\">\n <i class=\"bi bi-plus-circle me-1\"></i>Create Template\n </button>\n</div>\n","import { Component, OnInit, OnDestroy, signal } from '@angular/core';\r\nimport { CommonModule } from '@angular/common';\r\nimport { FormsModule } from '@angular/forms';\r\nimport { NgbActiveModal, NgbModule } from '@ng-bootstrap/ng-bootstrap';\r\nimport { Subject } from 'rxjs';\r\nimport { takeUntil } from 'rxjs/operators';\r\nimport { Schema } from '../../models';\r\nimport { SchemaService } from '../../services';\r\nimport { ToastService } from '@noatgnu/cupcake-core';\r\n\r\nexport interface SchemaSelectionResult {\r\n selectedSchemaIds: number[];\r\n}\r\n\r\n@Component({\r\n selector: 'ccv-schema-selection-modal',\r\n standalone: true,\r\n imports: [CommonModule, FormsModule, NgbModule],\r\n templateUrl: './schema-selection-modal.html',\r\n styleUrl: './schema-selection-modal.scss'\r\n})\r\nexport class SchemaSelectionModal implements OnInit, OnDestroy {\r\n private destroy$ = new Subject<void>();\r\n\r\n // Modal configuration - set from parent\r\n title = 'Select Schemas for Column Reordering';\r\n description = 'Choose which schemas to use for reordering columns. Columns will be ordered based on the selected schemas.';\r\n\r\n // State signals\r\n isLoading = signal(false);\r\n availableSchemas = signal<Schema[]>([]);\r\n selectedSchemaIds = signal<Set<number>>(new Set());\r\n searchTerm = signal('');\r\n\r\n constructor(\r\n public activeModal: NgbActiveModal,\r\n private schemaService: SchemaService,\r\n private toastService: ToastService\r\n ) {}\r\n\r\n ngOnInit(): void {\r\n this.loadAvailableSchemas();\r\n }\r\n\r\n ngOnDestroy(): void {\r\n this.destroy$.next();\r\n this.destroy$.complete();\r\n }\r\n\r\n private loadAvailableSchemas(): void {\r\n this.isLoading.set(true);\r\n\r\n this.schemaService.getAvailableSchemas().pipe(\r\n takeUntil(this.destroy$)\r\n ).subscribe({\r\n next: (schemas) => {\r\n this.availableSchemas.set(schemas.filter(schema => schema.isActive));\r\n this.isLoading.set(false);\r\n },\r\n error: (error) => {\r\n console.error('Error loading schemas:', error);\r\n this.toastService.error('Failed to load available schemas');\r\n this.isLoading.set(false);\r\n }\r\n });\r\n }\r\n\r\n get filteredSchemas(): Schema[] {\r\n const schemas = this.availableSchemas();\r\n const search = this.searchTerm().toLowerCase();\r\n\r\n if (!search) {\r\n return schemas;\r\n }\r\n\r\n return schemas.filter(schema =>\r\n schema.name.toLowerCase().includes(search) \|\|\r\n schema.description?.toLowerCase().includes(search) \|\|\r\n schema.category?.toLowerCase().includes(search)\r\n );\r\n }\r\n\r\n toggleSchemaSelection(schemaId: number): void {\r\n const selected = new Set(this.selectedSchemaIds());\r\n\r\n if (selected.has(schemaId)) {\r\n selected.delete(schemaId);\r\n } else {\r\n selected.add(schemaId);\r\n }\r\n\r\n this.selectedSchemaIds.set(selected);\r\n }\r\n\r\n isSchemaSelected(schemaId: number): boolean {\r\n return this.selectedSchemaIds().has(schemaId);\r\n }\r\n\r\n selectAll(): void {\r\n const allIds = new Set(this.filteredSchemas.map(schema => schema.id));\r\n this.selectedSchemaIds.set(allIds);\r\n }\r\n\r\n clearSelection(): void {\r\n this.selectedSchemaIds.set(new Set());\r\n }\r\n\r\n onCancel(): void {\r\n this.activeModal.dismiss();\r\n }\r\n\r\n onConfirm(): void {\r\n const selectedIds = Array.from(this.selectedSchemaIds());\r\n\r\n if (selectedIds.length === 0) {\r\n this.toastService.warning('Please select at least one schema');\r\n return;\r\n }\r\n\r\n const result: SchemaSelectionResult = {\r\n selectedSchemaIds: selectedIds\r\n };\r\n\r\n this.activeModal.close(result);\r\n }\r\n\r\n getBadgeClass(category?: string): string {\r\n if (!category) return 'bg-secondary';\r\n\r\n const categoryMap: Record<string, string> = {\r\n 'proteomics': 'bg-primary',\r\n 'genomics': 'bg-success',\r\n 'metabolomics': 'bg-info',\r\n 'general': 'bg-secondary',\r\n 'custom': 'bg-warning'\r\n };\r\n\r\n return categoryMap[category.toLowerCase()] \|\| 'bg-secondary';\r\n }\r\n}","<!-- Schema Selection Modal -->\r\n<div class=\"modal-header\">\r\n <h4 class=\"modal-title\">\r\n <i class=\"bi bi-arrows-move me-2\"></i>{{ title }}\r\n </h4>\r\n <button type=\"button\" class=\"btn-close\" aria-label=\"Close\" (click)=\"onCancel()\"></button>\r\n</div>\r\n\r\n<div class=\"modal-body\">\r\n <!-- Description -->\r\n <div class=\"alert alert-info mb-4\">\r\n <div class=\"d-flex align-items-start\">\r\n <i class=\"bi bi-info-circle-fill me-2 mt-1\"></i>\r\n <div>\r\n <small>{{ description }}</small>\r\n <br>\r\n <small class=\"text-muted\">\r\n Leave empty to use all available schemas or select specific ones for custom ordering.\r\n </small>\r\n </div>\r\n </div>\r\n </div>\r\n\r\n <!-- Search and Actions -->\r\n <div class=\"row mb-3\">\r\n <div class=\"col-md-8\">\r\n <div class=\"input-group\">\r\n <span class=\"input-group-text\">\r\n <i class=\"bi bi-search\"></i>\r\n </span>\r\n <input\r\n type=\"text\"\r\n class=\"form-control\"\r\n placeholder=\"Search schemas...\"\r\n [(ngModel)]=\"searchTerm\"\r\n [ngModelOptions]=\"{updateOn: 'change'}\"\r\n >\r\n </div>\r\n </div>\r\n <div class=\"col-md-4\">\r\n <div class=\"btn-group w-100\" role=\"group\">\r\n <button\r\n type=\"button\"\r\n class=\"btn btn-outline-primary btn-sm\"\r\n (click)=\"selectAll()\"\r\n [disabled]=\"filteredSchemas.length === 0\"\r\n title=\"Select All Visible\">\r\n <i class=\"bi bi-check-all\"></i> All\r\n </button>\r\n <button\r\n type=\"button\"\r\n class=\"btn btn-outline-secondary btn-sm\"\r\n (click)=\"clearSelection()\"\r\n [disabled]=\"selectedSchemaIds().size === 0\"\r\n title=\"Clear Selection\">\r\n <i class=\"bi bi-x-circle\"></i> Clear\r\n </button>\r\n </div>\r\n </div>\r\n </div>\r\n\r\n <!-- Selection Summary -->\r\n @if (selectedSchemaIds().size > 0) {\r\n <div class=\"alert alert-success mb-3\">\r\n <i class=\"bi bi-check-circle me-2\"></i>\r\n <strong>{{ selectedSchemaIds().size }}</strong> schema{{ selectedSchemaIds().size !== 1 ? 's' : '' }} selected\r\n </div>\r\n }\r\n\r\n <!-- Loading State -->\r\n @if (isLoading()) {\r\n <div class=\"text-center py-4\">\r\n <div class=\"spinner-border text-primary\" role=\"status\">\r\n <span class=\"visually-hidden\">Loading schemas...</span>\r\n </div>\r\n <p class=\"text-muted mt-2\">Loading available schemas...</p>\r\n </div>\r\n } @else {\r\n <!-- Schema List -->\r\n <div class=\"schema-list\" style=\"max-height: 400px; overflow-y: auto;\">\r\n @if (filteredSchemas.length === 0) {\r\n <div class=\"text-center py-4 text-muted\">\r\n <i class=\"bi bi-search fs-1 mb-3 opacity-50\"></i>\r\n <h6>No schemas found</h6>\r\n <p class=\"small mb-0\">\r\n @if (searchTerm()) {\r\n Try adjusting your search terms\r\n } @else {\r\n No schemas are currently available\r\n }\r\n </p>\r\n </div>\r\n } @else {\r\n @for (schema of filteredSchemas; track schema.id) {\r\n <div\r\n class=\"schema-item border rounded p-3 mb-2\"\r\n [class.selected]=\"isSchemaSelected(schema.id)\"\r\n (click)=\"toggleSchemaSelection(schema.id)\"\r\n role=\"button\">\r\n\r\n <div class=\"d-flex align-items-start\">\r\n <!-- Checkbox -->\r\n <div class=\"form-check me-3\">\r\n <input\r\n class=\"form-check-input\"\r\n type=\"checkbox\"\r\n [checked]=\"isSchemaSelected(schema.id)\"\r\n [id]=\"'schema-' + schema.id\"\r\n (click)=\"$event.stopPropagation()\">\r\n <label class=\"form-check-label visually-hidden\" [for]=\"'schema-' + schema.id\">\r\n Select {{ schema.name }}\r\n </label>\r\n </div>\r\n\r\n <!-- Schema Info -->\r\n <div class=\"flex-grow-1\">\r\n <div class=\"d-flex justify-content-between align-items-start mb-2\">\r\n <h6 class=\"mb-0 text-truncate me-2\">\r\n {{ schema.name }}\r\n @if (schema.version) {\r\n <small class=\"text-muted\">v{{ schema.version }}</small>\r\n }\r\n </h6>\r\n\r\n <div class=\"flex-shrink-0\">\r\n @if (schema.category) {\r\n <span class=\"badge\" [class]=\"getBadgeClass(schema.category)\">\r\n {{ schema.category }}\r\n </span>\r\n }\r\n </div>\r\n </div>\r\n\r\n @if (schema.description) {\r\n <p class=\"text-muted small mb-1\">{{ schema.description }}</p>\r\n }\r\n\r\n <div class=\"d-flex align-items-center justify-content-between\">\r\n @if (schema.columnsCount !== undefined) {\r\n <small class=\"text-muted\">\r\n <i class=\"bi bi-columns me-1\"></i>{{ schema.columnsCount }} columns\r\n </small>\r\n }\r\n\r\n @if (schema.url) {\r\n <a\r\n [href]=\"schema.url\"\r\n target=\"_blank\"\r\n class=\"btn btn-sm btn-outline-secondary\"\r\n title=\"View Schema Documentation\"\r\n (click)=\"$event.stopPropagation()\">\r\n <i class=\"bi bi-box-arrow-up-right\"></i>\r\n </a>\r\n }\r\n </div>\r\n </div>\r\n </div>\r\n </div>\r\n }\r\n }\r\n </div>\r\n }\r\n</div>\r\n\r\n<div class=\"modal-footer\">\r\n <button type=\"button\" class=\"btn btn-secondary\" (click)=\"onCancel()\">\r\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\r\n </button>\r\n <button\r\n type=\"button\"\r\n class=\"btn btn-primary\"\r\n (click)=\"onConfirm()\"\r\n [disabled]=\"isLoading()\">\r\n <i class=\"bi bi-arrows-move me-1\"></i>\r\n @if (selectedSchemaIds().size > 0) {\r\n Reorder with {{ selectedSchemaIds().size }} Schema{{ selectedSchemaIds().size !== 1 ? 's' : '' }}\r\n } @else {\r\n Reorder with All Schemas\r\n }\r\n </button>\r\n</div>","import { Component, EventEmitter, Output, Input, OnInit } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbActiveModal } from '@ng-bootstrap/ng-bootstrap';\nimport { LabGroup } from '@noatgnu/cupcake-core';\nimport { MetadataTableTemplate } from '../../../models';\n\nexport interface TableCreationData {\n name: string;\n templateId: number;\n sampleCount?: number;\n description?: string;\n labGroupId?: number;\n}\n\n@Component({\n selector: 'ccv-table-creation-modal',\n standalone: true,\n imports: [CommonModule, ReactiveFormsModule],\n templateUrl: './table-creation-modal.html',\n styleUrl: './table-creation-modal.scss'\n})\nexport class TableCreationModalComponent implements OnInit {\n @Input() template!: MetadataTableTemplate;\n @Input() labGroups: LabGroup[] = [];\n @Input() selectedLabGroupId?: number;\n @Output() tableCreated = new EventEmitter<TableCreationData>();\n\n tableForm: FormGroup;\n isCreating = false;\n errorMessage: string \| null = null;\n\n constructor(\n private fb: FormBuilder,\n public activeModal: NgbActiveModal\n ) {\n this.tableForm = this.fb.group({\n name: ['', [Validators.required, Validators.minLength(2)]],\n sampleCount: [1, [Validators.required, Validators.min(1), Validators.max(10000)]],\n description: [''],\n labGroupId: [null]\n });\n }\n\n ngOnInit() {\n // Set default values\n if (this.template) {\n this.tableForm.patchValue({\n name: `${this.template.name} - Table`,\n labGroupId: this.selectedLabGroupId\n });\n }\n }\n\n onSubmit() {\n if (this.tableForm.valid && this.template) {\n this.isCreating = true;\n this.errorMessage = null;\n \n const formValue = this.tableForm.value;\n const tableData: TableCreationData = {\n name: formValue.name,\n templateId: this.template.id!,\n sampleCount: formValue.sampleCount \|\| 1,\n description: formValue.description \|\| undefined,\n labGroupId: formValue.labGroupId \|\| undefined\n };\n\n this.tableCreated.emit(tableData);\n }\n }\n\n onClose() {\n this.activeModal.dismiss();\n }\n\n setCreatingState(isCreating: boolean) {\n this.isCreating = isCreating;\n }\n\n setErrorMessage(message: string \| null) {\n this.errorMessage = message;\n }\n\n getFieldError(fieldName: string): string \| null {\n const field = this.tableForm.get(fieldName);\n if (field?.invalid && field?.touched) {\n if (field.errors?.['required']) {\n return `${this.getFieldLabel(fieldName)} is required`;\n }\n if (field.errors?.['minlength']) {\n return `${this.getFieldLabel(fieldName)} must be at least ${field.errors['minlength'].requiredLength} characters`;\n }\n if (field.errors?.['min']) {\n return `${this.getFieldLabel(fieldName)} must be at least ${field.errors['min'].min}`;\n }\n if (field.errors?.['max']) {\n return `${this.getFieldLabel(fieldName)} must be at most ${field.errors['max'].max}`;\n }\n }\n return null;\n }\n\n private getFieldLabel(fieldName: string): string {\n const labels: { [key: string]: string } = {\n name: 'Table name',\n sampleCount: 'Sample count',\n description: 'Description',\n labGroupId: 'Lab group'\n };\n return labels[fieldName] \|\| fieldName;\n }\n}\n","<div class=\"modal-header\">\n <h5 class=\"modal-title\">\n <i class=\"bi bi-table me-2\"></i>Create Table from Template\n </h5>\n <button type=\"button\" class=\"btn-close\" (click)=\"onClose()\" aria-label=\"Close\"></button>\n</div>\n\n<div class=\"modal-body\">\n @if (template) {\n <div class=\"alert alert-info d-flex align-items-center mb-4\">\n <i class=\"bi bi-info-circle me-2\"></i>\n <div>\n <strong>Template:</strong> {{ template.name }}\n @if (template.description) {\n <br><small>{{ template.description }}</small>\n }\n </div>\n </div>\n\n @if (errorMessage) {\n <div class=\"alert alert-danger d-flex align-items-center\">\n <i class=\"bi bi-exclamation-triangle me-2\"></i>\n {{ errorMessage }}\n </div>\n }\n\n <form [formGroup]=\"tableForm\" (ngSubmit)=\"onSubmit()\">\n <div class=\"row g-3\">\n <!-- Table Name -->\n <div class=\"col-12\">\n <div class=\"form-floating\">\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"tableName\"\n formControlName=\"name\"\n placeholder=\"Table name\"\n [class.is-invalid]=\"getFieldError('name')\">\n <label for=\"tableName\">Table Name </label>\n </div>\n @if (getFieldError('name')) {\n <div class=\"invalid-feedback d-block\">\n {{ getFieldError('name') }}\n </div>\n }\n </div>\n\n <!-- Sample Count -->\n <div class=\"col-md-6\">\n <div class=\"form-floating\">\n <input\n type=\"number\"\n class=\"form-control\"\n id=\"sampleCount\"\n formControlName=\"sampleCount\"\n placeholder=\"Sample count\"\n min=\"1\"\n max=\"10000\"\n [class.is-invalid]=\"getFieldError('sampleCount')\">\n <label for=\"sampleCount\">Number of Samples </label>\n </div>\n @if (getFieldError('sampleCount')) {\n <div class=\"invalid-feedback d-block\">\n {{ getFieldError('sampleCount') }}\n </div>\n }\n <div class=\"form-text\">\n Number of sample rows to create in the table (1-10,000)\n </div>\n </div>\n\n <!-- Lab Group -->\n <div class=\"col-md-6\">\n <div class=\"form-floating\">\n <select\n class=\"form-select\"\n id=\"labGroupSelect\"\n formControlName=\"labGroupId\">\n <option [ngValue]=\"null\">No Lab Group</option>\n @for (group of labGroups; track group.id) {\n <option [ngValue]=\"group.id\">{{ group.name }}</option>\n }\n </select>\n <label for=\"labGroupSelect\">Lab Group</label>\n </div>\n <div class=\"form-text\">\n Optional: Assign table to a specific lab group\n </div>\n </div>\n\n <!-- Description -->\n <div class=\"col-12\">\n <div class=\"form-floating\">\n <textarea\n class=\"form-control\"\n id=\"tableDescription\"\n formControlName=\"description\"\n placeholder=\"Description\"\n style=\"height: 100px\"></textarea>\n <label for=\"tableDescription\">Description (optional)</label>\n </div>\n <div class=\"form-text\">\n Optional description for the metadata table\n </div>\n </div>\n </div>\n </form>\n }\n</div>\n\n<div class=\"modal-footer\">\n <button type=\"button\" class=\"btn btn-secondary\" (click)=\"onClose()\" [disabled]=\"isCreating\">\n Cancel\n </button>\n <button\n type=\"submit\"\n class=\"btn btn-success\"\n (click)=\"onSubmit()\"\n [disabled]=\"tableForm.invalid \|\| isCreating\">\n @if (isCreating) {\n <span class=\"spinner-border spinner-border-sm me-2\" role=\"status\"></span>\n }\n <i class=\"bi bi-table me-1\"></i>Create Table\n </button>\n</div>\n","import { Component, OnInit, signal, computed, effect } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup } from '@angular/forms';\nimport { NgbModule, NgbModal } from '@ng-bootstrap/ng-bootstrap';\nimport { debounceTime, distinctUntilChanged } from 'rxjs';\nimport { MetadataTableTemplateEditModal } from './metadata-table-template-edit-modal/metadata-table-template-edit-modal';\nimport { TemplateSchemaSelectionModal, TemplateSchemaSelectionResult } from './schema-selection-modal/schema-selection-modal';\nimport { SchemaSelectionModal as ReorderSchemaSelectionModal, SchemaSelectionResult as ReorderSchemaSelectionResult } from '../schema-selection-modal/schema-selection-modal';\nimport { TableCreationModalComponent, TableCreationData } from './table-creation-modal/table-creation-modal';\nimport { LabGroupService } from '@noatgnu/cupcake-core';\nimport { AsyncTaskUIService } from '../async-task-ui';\nimport { LabGroup, LabGroupQueryResponse, ResourceVisibility } from '@noatgnu/cupcake-core';\nimport {\n MetadataTableTemplate,\n MetadataTableTemplateQueryResponse,\n MetadataTable,\n MetadataTableTemplateCreateRequest\n} from '../../models';\nimport { MetadataTableTemplateService } from '../../services/metadata-table-template';\nimport { ToastService } from '@noatgnu/cupcake-core';\n\n@Component({\n selector: 'ccv-metadata-table-templates',\n imports: [CommonModule, ReactiveFormsModule, NgbModule],\n templateUrl: './metadata-table-templates.html',\n styleUrl: './metadata-table-templates.scss'\n})\nexport class MetadataTableTemplates implements OnInit {\n searchForm: FormGroup;\n\n // Signals for reactive state management\n private searchParams = signal({\n search: '',\n labGroupId: null as number \| null,\n visibility: ResourceVisibility.PRIVATE,\n isDefault: false,\n limit: 10,\n offset: 0\n });\n\n private labGroupParams = signal({\n limit: 10,\n offset: 0\n });\n\n // Computed signals for better performance\n isLoading = signal(false);\n selectedLabGroup = signal<LabGroup \| null>(null);\n currentPage = signal(1);\n pageSize = signal(10);\n totalItems = signal(0);\n\n labGroupsCurrentPage = signal(1);\n labGroupsPageSize = signal(10);\n labGroupsTotalItems = signal(0);\n\n // Direct signal-based data management\n templatesData = signal<MetadataTableTemplateQueryResponse>({ count: 0, results: [] });\n labGroupsData = signal<LabGroupQueryResponse>({ count: 0, results: [] });\n\n\n // Computed values for better performance\n hasTemplates = computed(() => this.templatesData().results.length > 0);\n hasLabGroups = computed(() => this.labGroupsData().results.length > 0);\n showTemplatesPagination = computed(() => this.templatesData().count > this.pageSize());\n showLabGroupsPagination = computed(() => this.labGroupsData().count > this.labGroupsPageSize());\n\n // Schema-related properties\n availableSchemas = signal<any[]>([]);\n isLoadingSchemas = signal(false);\n\n constructor(\n private fb: FormBuilder,\n private metadataTableTemplateService: MetadataTableTemplateService,\n private labGroupService: LabGroupService,\n private modalService: NgbModal,\n private toastService: ToastService,\n private asyncTaskService: AsyncTaskUIService\n ) {\n this.searchForm = this.fb.group({\n search: [''],\n labGroupId: [null],\n visibility: [ResourceVisibility.PRIVATE],\n isDefault: [false]\n });\n\n // Effect to automatically reload templates when search params change\n effect(() => {\n const params = this.searchParams();\n this.loadTemplatesWithParams(params);\n });\n\n // Effect to automatically reload lab groups when params change\n effect(() => {\n const params = this.labGroupParams();\n this.loadLabGroupsWithParams(params);\n });\n }\n\n ngOnInit() {\n this.setupSearch();\n this.loadInitialData();\n this.loadAvailableSchemas();\n }\n\n private loadInitialData() {\n // Initial load - signals will handle subsequent updates via effects\n this.labGroupParams.set({\n limit: this.labGroupsPageSize(),\n offset: 0\n });\n\n this.searchParams.set({\n search: '',\n labGroupId: null,\n visibility: ResourceVisibility.PRIVATE,\n isDefault: false,\n limit: this.pageSize(),\n offset: 0\n });\n }\n\n private loadLabGroupsWithParams(params: { limit: number; offset: number }) {\n this.labGroupService.getMyLabGroups(params).subscribe({\n next: (response) => {\n this.labGroupsTotalItems.set(response.count);\n this.labGroupsData.set(response);\n },\n error: (error) => {\n console.error('Error loading lab groups:', error);\n this.labGroupsData.set({ count: 0, results: [] });\n }\n });\n }\n\n private setupSearch() {\n // Subscribe to form changes and update search params signal\n this.searchForm.valueChanges.pipe(\n debounceTime(300),\n distinctUntilChanged()\n ).subscribe(formValue => {\n // Reset to first page when searching\n this.currentPage.set(1);\n\n // Update search params signal - this will trigger the effect\n this.searchParams.set({\n search: formValue.search \|\| '',\n labGroupId: formValue.labGroupId \|\| null,\n visibility: formValue.visibility \|\| ResourceVisibility.PRIVATE,\n isDefault: formValue.isDefault \|\| false,\n limit: this.pageSize(),\n offset: 0 // Always start from first page when searching\n });\n });\n }\n\n private loadTemplatesWithParams(params: any) {\n this.isLoading.set(true);\n\n this.metadataTableTemplateService.getMetadataTableTemplates({\n search: params.search \|\| undefined,\n labGroupId: params.labGroupId \|\| undefined,\n visibility: params.visibility \|\| undefined,\n isDefault: params.isDefault \|\| undefined,\n limit: params.limit,\n offset: params.offset\n }).subscribe({\n next: (response) => {\n this.isLoading.set(false);\n this.totalItems.set(response.count);\n this.templatesData.set(response);\n },\n error: (error) => {\n this.isLoading.set(false);\n console.error('Error loading metadata table templates:', error);\n this.templatesData.set({ count: 0, results: [] });\n }\n });\n }\n\n onLabGroupChange(event: Event) {\n const target = event.target as HTMLSelectElement;\n const value = target.value;\n const id = value === 'null' ? null : Number(value);\n const labGroup = id ? this.findLabGroupById(id) : null;\n this.selectedLabGroup.set(labGroup);\n this.currentPage.set(1);\n\n // Update search params - effect will trigger reload\n this.searchParams.update(params => ({\n ...params,\n labGroupId: id,\n offset: 0\n }));\n }\n\n private findLabGroupById(id: number): LabGroup \| null {\n const labGroups = this.labGroupsData();\n return labGroups.results.find((group: LabGroup) => group.id === id) \|\| null;\n }\n\n getLabGroupName(labGroupId: number \| undefined): string {\n if (!labGroupId) return '-';\n const labGroup = this.findLabGroupById(labGroupId);\n return labGroup?.name \|\| labGroupId.toString();\n }\n\n onPageChange(page: number) {\n this.currentPage.set(page);\n this.searchParams.update(params => ({\n ...params,\n offset: (page - 1) * this.pageSize()\n }));\n }\n\n onLabGroupsPageChange(page: number) {\n this.labGroupsCurrentPage.set(page);\n this.labGroupParams.set({\n limit: this.labGroupsPageSize(),\n offset: (page - 1) * this.labGroupsPageSize()\n });\n }\n\n createTemplate() {\n this.openTemplateModal(null, false);\n }\n\n editTemplate(template: MetadataTableTemplate) {\n this.openTemplateModal(template, true);\n }\n\n deleteTemplate(template: MetadataTableTemplate) {\n // Enhanced delete confirmation with better UX\n const confirmMessage = `Are you sure you want to delete the template \"${template.name}\"?\\n\\nThis action cannot be undone.`;\n\n if (confirm(confirmMessage)) {\n this.isLoading.set(true);\n this.metadataTableTemplateService.deleteMetadataTableTemplate(template.id!).subscribe({\n next: () => {\n this.isLoading.set(false);\n console.log('Template deleted successfully');\n this.refreshTemplates();\n },\n error: (error) => {\n this.isLoading.set(false);\n console.error('Error deleting template:', error);\n alert('Failed to delete template. Please try again.');\n }\n });\n }\n }\n\n duplicateTemplate(template: MetadataTableTemplate) {\n const duplicatedTemplate: MetadataTableTemplateCreateRequest = {\n name: `${template.name} (Copy)`,\n description: template.description,\n userColumnIds: [...(template.userColumnIds \|\| [])],\n fieldMaskMapping: { ...template.fieldMaskMapping },\n visibility: ResourceVisibility.PRIVATE, // Always create as private\n isDefault: false, // Never default\n labGroup: template.labGroup \|\| this.selectedLabGroup()?.id \|\| undefined\n };\n\n this.isLoading.set(true);\n this.metadataTableTemplateService.createMetadataTableTemplate(duplicatedTemplate).subscribe({\n next: (newTemplate) => {\n this.isLoading.set(false);\n console.log('Template duplicated:', newTemplate);\n this.refreshTemplates();\n },\n error: (error) => {\n this.isLoading.set(false);\n console.error('Error duplicating template:', error);\n alert('Failed to duplicate template. Please try again.');\n }\n });\n }\n\n private openTemplateModal(template: MetadataTableTemplate \| null, isEdit: boolean) {\n const modalRef = this.modalService.open(MetadataTableTemplateEditModal, {\n size: 'lg',\n backdrop: 'static',\n keyboard: false\n });\n\n modalRef.componentInstance.template = template;\n modalRef.componentInstance.labGroups = this.labGroupsData().results;\n modalRef.componentInstance.isEdit = isEdit;\n\n modalRef.componentInstance.templateSaved.subscribe((templateData: Partial<MetadataTableTemplate>) => {\n this.handleTemplateSave(templateData, template?.id \|\| null, isEdit);\n modalRef.componentInstance.onClose();\n });\n }\n\n private handleTemplateSave(templateData: Partial<MetadataTableTemplate>, templateId: number \| null, isEdit: boolean) {\n this.isLoading.set(true);\n\n const apiCall = isEdit && templateId\n ? this.metadataTableTemplateService.updateMetadataTableTemplate(templateId, templateData)\n : this.metadataTableTemplateService.createMetadataTableTemplate(templateData as MetadataTableTemplateCreateRequest);\n\n apiCall.subscribe({\n next: (template) => {\n this.isLoading.set(false);\n console.log(`Metadata table template ${isEdit ? 'updated' : 'created'}:`, template);\n this.refreshTemplates();\n },\n error: (error) => {\n this.isLoading.set(false);\n console.error(`Error ${isEdit ? 'updating' : 'creating'} metadata table template:`, error);\n alert(`Failed to ${isEdit ? 'update' : 'create'} template. Please try again.`);\n }\n });\n }\n\n private refreshTemplates() {\n // Trigger a refresh by updating the search params\n this.searchParams.update(params => ({ ...params }));\n }\n\n private loadAvailableSchemas() {\n this.isLoadingSchemas.set(true);\n\n this.metadataTableTemplateService.getAvailableSchemas().subscribe({\n next: (schemas) => {\n this.availableSchemas.set(schemas);\n this.isLoadingSchemas.set(false);\n },\n error: (error) => {\n console.error('Error loading schemas:', error);\n this.isLoadingSchemas.set(false);\n }\n });\n }\n\n\n createTemplateWithCustomSchemas() {\n this.openSchemaSelectionModal();\n }\n\n private openSchemaSelectionModal() {\n const modalRef = this.modalService.open(TemplateSchemaSelectionModal, {\n size: 'xl',\n backdrop: 'static',\n keyboard: false\n });\n\n // Pass data to the modal\n modalRef.componentInstance.availableSchemas = this.availableSchemas();\n modalRef.componentInstance.labGroups = this.labGroupsData().results;\n\n // Handle modal result\n modalRef.componentInstance.templateCreated.subscribe((result: TemplateSchemaSelectionResult) => {\n this.handleSchemaTemplateCreation(result);\n modalRef.close();\n });\n }\n\n private handleSchemaTemplateCreation(result: TemplateSchemaSelectionResult) {\n this.isLoading.set(true);\n\n const templateData = {\n name: result.name,\n schemaIds: result.schemaIds,\n description: result.description,\n labGroupId: result.labGroupId,\n visibility: result.visibility,\n isDefault: result.isDefault\n };\n\n this.metadataTableTemplateService.createFromSchema({\n schemaIds: result.schemaIds,\n name: result.name,\n description: result.description\n }).subscribe({\n next: (response) => {\n this.isLoading.set(false);\n console.log('Template created from schemas:', response);\n this.refreshTemplates();\n },\n error: (error) => {\n this.isLoading.set(false);\n console.error('Error creating template from schemas:', error);\n alert('Failed to create template from schemas. Please try again.');\n }\n });\n }\n\n createTableFromTemplate(template: MetadataTableTemplate) {\n this.openTableCreationModal(template);\n }\n\n private openTableCreationModal(template: MetadataTableTemplate) {\n const modalRef = this.modalService.open(TableCreationModalComponent, {\n size: 'lg',\n backdrop: 'static',\n keyboard: false\n });\n\n modalRef.componentInstance.template = template;\n modalRef.componentInstance.labGroups = this.labGroupsData().results;\n modalRef.componentInstance.selectedLabGroupId = this.selectedLabGroup()?.id;\n\n modalRef.componentInstance.tableCreated.subscribe((tableData: TableCreationData) => {\n this.handleTableCreation(tableData, modalRef);\n });\n }\n\n private handleTableCreation = (data: TableCreationData, modalRef?: any): void => {\n this.isLoading.set(true);\n\n // Set creating state on modal if provided\n if (modalRef?.componentInstance) {\n modalRef.componentInstance.setCreatingState(true);\n }\n\n this.metadataTableTemplateService.createTableFromTemplate({\n templateId: data.templateId,\n name: data.name,\n description: data.description,\n sampleCount: data.sampleCount \|\| 1\n }).subscribe({\n next: (response: MetadataTable) => {\n this.isLoading.set(false);\n console.log('Metadata table created from template:', response);\n\n // Close modal and show success message\n if (modalRef) {\n modalRef.close();\n }\n\n this.toastService.success(`Table \"${response.name}\" created successfully!`);\n },\n error: (error: { error?: { detail?: string; message?: string }; message?: string }) => {\n this.isLoading.set(false);\n console.error('Error creating table from template:', error);\n\n // Reset creating state on modal if provided and show error\n if (modalRef?.componentInstance) {\n modalRef.componentInstance.setCreatingState(false);\n const errorMsg = error?.error?.detail \|\| error?.error?.message \|\| error?.message \|\| 'Failed to create table from template. Please try again.';\n modalRef.componentInstance.setErrorMessage(errorMsg);\n } else {\n const errorMsg = error?.error?.detail \|\| error?.error?.message \|\| error?.message \|\| 'Failed to create table from template. Please try again.';\n this.toastService.error(errorMsg);\n }\n }\n });\n }\n\n /*\n Reorder template columns by schema selection\n /\n reorderTemplateColumns(template: MetadataTableTemplate): void {\n if (!template.columnCount \|\| template.columnCount === 0) {\n this.toastService.warning('Template has no columns to reorder');\n return;\n }\n\n const modalRef = this.modalService.open(ReorderSchemaSelectionModal, {\n size: 'lg',\n backdrop: 'static'\n });\n\n modalRef.componentInstance.title = 'Reorder Template Columns by Schema';\n modalRef.componentInstance.description = `Select schemas to reorder columns in template \"${template.name}\". Columns will be arranged based on the selected schema order.`;\n\n modalRef.result.then((result: ReorderSchemaSelectionResult) => {\n if (result && result.selectedSchemaIds) {\n this.performTemplateColumnReorder(template.id, result.selectedSchemaIds);\n }\n }).catch(() => {\n // Modal was dismissed - no action needed\n });\n }\n\n /\n Perform the actual template column reordering with async task monitoring\n /\n private performTemplateColumnReorder(templateId: number, schemaIds: number[]): void {\n this.isLoading.set(true);\n\n this.metadataTableTemplateService.reorderColumnsBySchemaAsync(templateId, schemaIds).subscribe({\n next: (response) => {\n console.log('Template column reorder task started:', response);\n this.toastService.success(`Template column reorder task queued successfully! Task ID: ${response.taskId}`);\n \n // Mark task for monitoring and start real-time updates (same pattern as other async operations)\n this.asyncTaskService.monitorTask(response.taskId);\n this.asyncTaskService.startRealtimeUpdates();\n \n this.isLoading.set(false);\n },\n error: (error) => {\n console.error('Error starting template column reorder:', error);\n this.toastService.error('Failed to start template column reordering');\n this.isLoading.set(false);\n }\n });\n }\n}\n","<div class=\"metadata-table-templates-container\">\n <!-- Header Section -->\n <nav class=\"navbar navbar-expand-lg bg-body-tertiary shadow-sm\">\n <div class=\"container-fluid\">\n <div class=\"d-flex align-items-center justify-content-between w-100\">\n <div class=\"d-flex align-items-center\">\n <h4 class=\"navbar-brand m-0 fw-bold\">\n <i class=\"bi bi-file-earmark-text me-2\"></i>Table Templates\n </h4>\n @if (selectedLabGroup()) {\n <span class=\"badge bg-primary ms-3\">{{ selectedLabGroup()!.name }}</span>\n }\n </div>\n <div class=\"d-flex gap-2\">\n <div class=\"btn-group\" ngbDropdown>\n <button type=\"button\" class=\"btn btn-primary btn-sm dropdown-toggle\" ngbDropdownToggle>\n <i class=\"bi bi-plus me-1\"></i>New Template\n </button>\n <div class=\"dropdown-menu dropdown-menu-end\" ngbDropdownMenu>\n <a class=\"dropdown-item\" href=\"#\" (click)=\"createTemplateWithCustomSchemas(); $event.preventDefault()\"\n title=\"Select one or multiple schemas to create template\">\n <i class=\"bi bi-file-earmark-text me-2\"></i>\n <strong>Create from Schemas</strong>\n </a>\n <div class=\"dropdown-divider\"></div>\n <a class=\"dropdown-item\" href=\"#\" (click)=\"createTemplate(); $event.preventDefault()\"\n title=\"Create from scratch\">\n <i class=\"bi bi-wrench me-2\"></i>\n <strong>Manual Configuration</strong>\n </a>\n </div>\n </div>\n </div>\n </div>\n </div>\n </nav>\n\n <div class=\"templates-content p-4\">\n <!-- Search and Filters Section -->\n <div class=\"card mb-4\">\n <div class=\"card-header\">\n <h5 class=\"mb-0\">\n <i class=\"bi bi-search me-2\"></i>Search & Filters\n </h5>\n </div>\n <div class=\"card-body\">\n <form [formGroup]=\"searchForm\" class=\"row g-3\">\n <div class=\"col-md-3\">\n <div class=\"form-floating\">\n <input\n type=\"search\"\n class=\"form-control\"\n id=\"templateSearch\"\n formControlName=\"search\"\n placeholder=\"Search templates...\">\n <label for=\"templateSearch\">\n <i class=\"bi bi-search me-1\"></i>Search Templates\n </label>\n </div>\n </div>\n <div class=\"col-md-3\">\n <div class=\"form-floating\">\n <select\n class=\"form-select\"\n id=\"labGroupSelect\"\n formControlName=\"labGroupId\"\n (change)=\"onLabGroupChange($event)\">\n <option [ngValue]=\"null\">All Lab Groups</option>\n @if (hasLabGroups()) {\n @for (group of labGroupsData().results; track group.id) {\n <option [ngValue]=\"group.id\">{{ group.name }}</option>\n }\n }\n </select>\n <label for=\"labGroupSelect\">Lab Group</label>\n </div>\n\n <!-- Lab Groups Pagination -->\n @if (showLabGroupsPagination()) {\n <div class=\"d-flex justify-content-center mt-2\">\n <ngb-pagination\n [collectionSize]=\"labGroupsData().count\"\n [page]=\"labGroupsCurrentPage()\"\n [pageSize]=\"labGroupsPageSize()\"\n [maxSize]=\"3\"\n [boundaryLinks]=\"false\"\n [rotate]=\"true\"\n (pageChange)=\"onLabGroupsPageChange($event)\"\n class=\"pagination-sm\">\n </ngb-pagination>\n </div>\n }\n </div>\n <div class=\"col-md-3\">\n <div class=\"form-check form-switch mt-3\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"defaultTemplates\"\n formControlName=\"isDefault\">\n <label class=\"form-check-label\" for=\"defaultTemplates\">\n <i class=\"bi bi-star me-1\"></i>Default Templates Only\n </label>\n </div>\n </div>\n </form>\n </div>\n </div>\n\n <!-- Templates Table -->\n <div class=\"card\">\n <div class=\"card-header d-flex justify-content-between align-items-center\">\n <h5 class=\"mb-0\">\n <i class=\"bi bi-file-earmark-text me-2\"></i>Table Templates\n <span class=\"badge bg-primary ms-2\">{{ templatesData().count }}</span>\n </h5>\n @if (isLoading()) {\n <div class=\"spinner-border spinner-border-sm text-primary\" role=\"status\">\n <span class=\"visually-hidden\">Loading...</span>\n </div>\n }\n </div>\n <div class=\"card-body p-0\">\n @if (hasTemplates()) {\n <div class=\"table-responsive\">\n <table class=\"table table-hover mb-0\">\n <thead>\n <tr>\n <th><i class=\"bi bi-tag me-1\"></i>Template Name</th>\n <th><i class=\"bi bi-person me-1\"></i>Creator</th>\n <th><i class=\"bi bi-folder me-1\"></i>Lab Group</th>\n <th><i class=\"bi bi-list me-1\"></i>Columns</th>\n <th><i class=\"bi bi-eye me-1\"></i>Visibility</th>\n <th><i class=\"bi bi-star me-1\"></i>Default</th>\n <th><i class=\"bi bi-gear me-1\"></i>Actions</th>\n </tr>\n </thead>\n <tbody>\n @for (template of templatesData().results; track template.id) {\n <tr>\n <td>\n <strong>{{ template.name }}</strong>\n @if (template.description) {\n <br><small class=\"text-muted\">{{ template.description }}</small>\n }\n </td>\n <td>{{ template.ownerUsername \|\| 'System' }}</td>\n <td>\n @if (template.labGroup) {\n <span class=\"badge bg-info\">{{ getLabGroupName(template.labGroup) }}</span>\n } @else {\n <span class=\"text-muted\">-</span>\n }\n </td>\n <td>\n <span class=\"badge bg-secondary\">{{ template.columnCount \|\| 0 }}</span>\n </td>\n <td>\n @switch (template.visibility) {\n @case ('public') {\n <span class=\"badge bg-success\">Public</span>\n }\n @case ('group') {\n <span class=\"badge bg-info\">Lab Group</span>\n }\n @case ('private') {\n <span class=\"badge bg-warning\">Private</span>\n }\n @default {\n <span class=\"badge bg-secondary\">{{ template.visibility }}</span>\n }\n }\n </td>\n <td>\n @if (template.isDefault) {\n <i class=\"bi bi-star-fill text-warning\"></i>\n } @else {\n <span class=\"text-muted\">-</span>\n }\n </td>\n <td>\n <div class=\"btn-group btn-group-sm\" role=\"group\">\n <button\n class=\"btn btn-outline-success\"\n (click)=\"createTableFromTemplate(template)\"\n title=\"Create metadata table from this template\">\n <i class=\"bi bi-table\"></i>\n </button>\n <button\n class=\"btn btn-outline-primary\"\n (click)=\"editTemplate(template)\"\n title=\"Edit template\">\n <i class=\"bi bi-pencil\"></i>\n </button>\n <button\n class=\"btn btn-outline-info\"\n (click)=\"duplicateTemplate(template)\"\n title=\"Duplicate template\">\n <i class=\"bi bi-copy\"></i>\n </button>\n <button\n class=\"btn btn-outline-warning\"\n (click)=\"reorderTemplateColumns(template)\"\n title=\"Reorder columns by schema\"\n [disabled]=\"!template.columnCount \|\| template.columnCount === 0\">\n <i class=\"bi bi-arrows-move\"></i>\n </button>\n <button\n class=\"btn btn-outline-danger\"\n (click)=\"deleteTemplate(template)\"\n title=\"Delete template\">\n <i class=\"bi bi-trash\"></i>\n </button>\n </div>\n </td>\n </tr>\n }\n </tbody>\n </table>\n </div>\n\n <!-- Pagination -->\n @if (showTemplatesPagination()) {\n <div class=\"d-flex justify-content-center mt-3 p-3\">\n <ngb-pagination\n [collectionSize]=\"templatesData().count\"\n [page]=\"currentPage()\"\n [pageSize]=\"pageSize()\"\n [maxSize]=\"5\"\n [boundaryLinks]=\"true\"\n [rotate]=\"true\"\n (pageChange)=\"onPageChange($event)\"\n class=\"pagination-sm\">\n </ngb-pagination>\n </div>\n }\n } @else {\n <div class=\"empty-state text-center py-5\">\n <i class=\"bi bi-file-earmark-text fs-1 text-muted mb-3\"></i>\n <h5 class=\"text-muted\">No Table Templates Found</h5>\n <p class=\"text-muted\">\n @if (searchForm.get('search')?.value \|\| searchForm.get('labGroupId')?.value) {\n Try adjusting your search criteria or create a new template.\n } @else {\n Get started by creating your first table template.\n }\n </p>\n <button class=\"btn btn-primary\" (click)=\"createTemplate()\">\n <i class=\"bi bi-plus me-1\"></i>Create First Template\n </button>\n </div>\n }\n </div>\n </div>\n </div>\n</div>\n","export from './models';\nexport * from './services';\nexport * from './components';\n\nimport { Component } from '@angular/core';\n\n@Component({\n selector: 'ccv-cupcake-vanilla',\n imports: [],\n template: `\n <p>\n cupcake-vanilla works!\n </p>\n `,\n styles: ``\n})\nexport class CupcakeVanilla {\n\n}\n","/\n Public API Surface of cupcake-vanilla\n /\n\nexport from './lib/cupcake-vanilla';\nexport * from './lib/models';\nexport * from './lib/services';\nexport * from './lib/components';\n","/*\n Generated bundle index. Do not edit.\n /\n\nexport from 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1	+ 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enum OntologyType {\r\n NONE = '',\r\n SPECIES = 'species',\r\n TISSUE = 'tissue',\r\n HUMAN_DISEASE = 'human_disease',\r\n SUBCELLULAR_LOCATION = 'subcellular_location',\r\n UNIMOD = 'unimod',\r\n NCBI_TAXONOMY = 'ncbi_taxonomy',\r\n MONDO = 'mondo',\r\n UBERON = 'uberon',\r\n CHEBI = 'chebi',\r\n CELL_ONTOLOGY = 'cell_ontology',\r\n MS_UNIQUE_VOCABULARIES = 'ms_unique_vocabularies',\r\n PSI_MS = 'psi_ms'\r\n}\r\n\r\nexport const OntologyTypeLabels: Record<OntologyType, string> = {\r\n [OntologyType.NONE]: 'None',\r\n [OntologyType.SPECIES]: 'Species',\r\n [OntologyType.TISSUE]: 'Tissue',\r\n [OntologyType.HUMAN_DISEASE]: 'Human Disease',\r\n [OntologyType.SUBCELLULAR_LOCATION]: 'Subcellular Location',\r\n [OntologyType.UNIMOD]: 'Unimod Modifications',\r\n [OntologyType.NCBI_TAXONOMY]: 'NCBI Taxonomy',\r\n [OntologyType.MONDO]: 'MONDO Disease',\r\n [OntologyType.UBERON]: 'UBERON Anatomy',\r\n [OntologyType.CHEBI]: 'ChEBI',\r\n [OntologyType.CELL_ONTOLOGY]: 'Cell Ontology',\r\n [OntologyType.MS_UNIQUE_VOCABULARIES]: 'MS Unique Vocabularies',\r\n [OntologyType.PSI_MS]: 'PSI-MS Controlled Vocabulary'\r\n};\r\n\r\nexport enum TemplatePermissionLevel {\r\n READ = 'read',\r\n WRITE = 'write',\r\n ADMIN = 'admin'\r\n}\r\n\r\nexport const TemplatePermissionLabels: Record<TemplatePermissionLevel, string> = {\r\n [TemplatePermissionLevel.READ]: 'Read Only',\r\n [TemplatePermissionLevel.WRITE]: 'Read & Write',\r\n [TemplatePermissionLevel.ADMIN]: 'Administrator'\r\n};\r\n\r\nexport enum ColumnType {\r\n CHARACTERISTICS = 'characteristics',\r\n COMMENT = 'comment',\r\n FACTOR_VALUE = 'factor_value',\r\n SOURCE_NAME = 'source_name',\r\n SPECIAL = 'special'\r\n}","export interface UnimodSpecification {\r\n accession: string;\r\n name: string;\r\n definition: string;\r\n additionalData: Array<{id: string; description: string}>;\r\n generalProperties: Record<string, string>;\r\n specifications: Record<string, UnimodSpecification>;\r\n deltaMonoMass: string;\r\n deltaAvgeMass: string;\r\n deltaComposition: string;\r\n [key: string]: any;\r\n}\r\n\r\nexport interface UnimodFullData {\r\n accession: string;\r\n name: string;\r\n definition: string;\r\n additionalData: Array<{id: string; description: string}>;\r\n generalProperties: Record<string, string>;\r\n specifications: Record<string, UnimodSpecification>;\r\n deltaMonoMass: string;\r\n deltaAvgeMass: string;\r\n deltaComposition: string;\r\n [key: string]: any;\r\n}\r\n\r\nimport { OntologyType } from './enums';\r\n\r\nexport function isUnimodFullData(suggestion: any): suggestion is { fullData: UnimodFullData } {\r\n return suggestion &&\r\n suggestion.ontologyType === OntologyType.UNIMOD &&\r\n !!suggestion.fullData;\r\n}\r\n\r\nexport class OntologyUtils {\r\n static getUnimodSpecifications(suggestion: any): (UnimodSpecification & { specNumber: string })[] {\r\n if (!isUnimodFullData(suggestion)) return [];\r\n \r\n return Object.entries(suggestion.fullData.specifications).map(([specNum, spec]) => ({\r\n ...spec,\r\n specNumber: specNum\r\n }));\r\n }\r\n\r\n static getActiveUnimodSpecifications(suggestion: any): (UnimodSpecification & { specNumber: string })[] {\r\n return this.getUnimodSpecifications(suggestion).filter(spec => !spec['hidden']);\r\n }\r\n\r\n static formatUnimodName(data: UnimodFullData): string {\r\n return `${data.name} (${data.accession})`;\r\n }\r\n}","import { OntologyType, ColumnType } from './enums';\r\n\r\nexport interface OntologyCustomFilter {\r\n [ontologyType: string]: {\r\n [filterKey: string]: string \| number \| boolean;\r\n };\r\n}\r\n\r\nexport interface OntologyTypeConfig {\r\n value: string;\r\n label: string;\r\n customFilters?: OntologyCustomFilter;\r\n}\r\n\r\nexport interface ColumnTypeConfig {\r\n value: string;\r\n label: string;\r\n}\r\n\r\n// MS Unique Vocabularies term types based on backend load_ms_term.py\r\nexport enum MSTermType {\r\n INSTRUMENT = 'instrument',\r\n CLEAVAGE_AGENT = 'cleavage agent',\r\n DISSOCIATION_METHOD = 'dissociation method',\r\n SAMPLE_ATTRIBUTE = 'sample attribute',\r\n CELL_LINE = 'cell line',\r\n ENRICHMENT_PROCESS = 'enrichment process',\r\n FRACTIONATION_METHOD = 'fractionation method',\r\n DATA_ACQUISITION_METHOD = 'proteomics data acquisition method',\r\n REDUCTION_REAGENT = 'reduction reagent',\r\n ALKYLATION_REAGENT = 'alkylation reagent',\r\n MASS_ANALYZER_TYPE = 'mass analyzer type',\r\n ANCESTRAL_CATEGORY = 'ancestral category',\r\n SEX = 'sex',\r\n DEVELOPMENTAL_STAGE = 'developmental stage'\r\n}\r\n\r\n\r\n// Predefined ontology type configurations matching backend load_column_templates.py\r\nexport const ONTOLOGY_TYPE_CONFIGS: OntologyTypeConfig[] = [\r\n { value: OntologyType.NONE, label: 'None', customFilters: undefined },\r\n\r\n // Basic ontology types without custom filters\r\n { value: OntologyType.SPECIES, label: 'Species (UniProt)', customFilters: undefined },\r\n { value: OntologyType.NCBI_TAXONOMY, label: 'NCBI Taxonomy', customFilters: undefined },\r\n { value: OntologyType.TISSUE, label: 'Tissue (UniProt)', customFilters: undefined },\r\n { value: OntologyType.HUMAN_DISEASE, label: 'Human Disease (UniProt)', customFilters: undefined },\r\n { value: OntologyType.MONDO, label: 'MONDO Disease', customFilters: undefined },\r\n { value: OntologyType.UNIMOD, label: 'Modification (Unimod)', customFilters: undefined },\r\n { value: OntologyType.UBERON, label: 'Uberon Anatomy', customFilters: undefined },\r\n { value: OntologyType.SUBCELLULAR_LOCATION, label: 'Subcellular Location (UniProt)', customFilters: undefined },\r\n { value: OntologyType.CHEBI, label: 'ChEbi', customFilters: undefined },\r\n { value: OntologyType.CELL_ONTOLOGY, label: 'Cell Ontology', customFilters: undefined },\r\n { value: OntologyType.PSI_MS, label: 'PSI-MS', customFilters: undefined },\r\n\r\n // MS Unique Vocabularies with specific term_type filters\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Sample Attribute (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.SAMPLE_ATTRIBUTE } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Instrument (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.INSTRUMENT } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'MS Analyzer Type (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.MASS_ANALYZER_TYPE } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Cleavage Agent (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.CLEAVAGE_AGENT } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Dissociation Method (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.DISSOCIATION_METHOD } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Cell Line (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.CELL_LINE } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Enrichment Process (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.ENRICHMENT_PROCESS } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Fractionation Method (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.FRACTIONATION_METHOD } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Data Acquisition Method (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.DATA_ACQUISITION_METHOD } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Reduction Reagent (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.REDUCTION_REAGENT } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Alkylation Reagent (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.ALKYLATION_REAGENT } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Ancestral Category (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.ANCESTRAL_CATEGORY } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Sex (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.SEX } }\r\n },\r\n {\r\n value: OntologyType.MS_UNIQUE_VOCABULARIES,\r\n label: 'Developmental Stage (MS)',\r\n customFilters: { [OntologyType.MS_UNIQUE_VOCABULARIES]: { term_type: MSTermType.DEVELOPMENTAL_STAGE } }\r\n }\r\n];\r\n\r\nexport const COLUMN_TYPE_CONFIGS: ColumnTypeConfig[] = [\r\n { value: ColumnType.CHARACTERISTICS, label: 'Characteristics' },\r\n { value: ColumnType.COMMENT, label: 'Comment' },\r\n { value: ColumnType.FACTOR_VALUE, label: 'Factor Value' },\r\n { value: ColumnType.SOURCE_NAME, label: 'Source Name' },\r\n { value: ColumnType.SPECIAL, label: 'Special' }\r\n];","import { ColumnType } from './enums';\r\n\r\nexport interface SdrfColumnConfig {\r\n name: string;\r\n type: string;\r\n description: string;\r\n category?: SdrfColumnCategory;\r\n isRequired?: boolean;\r\n}\r\n\r\nexport enum SdrfColumnCategory {\r\n CORE_SAMPLE = 'Core Sample Metadata',\r\n CHARACTERISTICS = 'Characteristics',\r\n ASSAY = 'Assay Information',\r\n COMMENTS = 'Comments',\r\n MODIFICATIONS = 'Modifications & Enzymes',\r\n MASS_TOLERANCES = 'Mass Tolerances',\r\n TECHNICAL_PARAMS = 'Technical Parameters',\r\n SAMPLE_PREP = 'Sample Preparation',\r\n FILE_PROJECT = 'File & Project Information'\r\n}\r\n\r\n// Official SDRF-Proteomics column configurations based on specification\r\nexport const OFFICIAL_SDRF_COLUMNS: SdrfColumnConfig[] = [\r\n // Core sample metadata\r\n {\r\n name: 'source name',\r\n type: ColumnType.SOURCE_NAME,\r\n description: 'Unique sample identifier',\r\n category: SdrfColumnCategory.CORE_SAMPLE,\r\n isRequired: true\r\n },\r\n\r\n // Required characteristics\r\n {\r\n name: 'characteristics[organism]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Organism of the sample',\r\n category: SdrfColumnCategory.CHARACTERISTICS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'characteristics[disease]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Disease under study',\r\n category: SdrfColumnCategory.CHARACTERISTICS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'characteristics[organism part]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Part of organism anatomy',\r\n category: SdrfColumnCategory.CHARACTERISTICS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'characteristics[cell type]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Cell type',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n\r\n // Additional characteristics\r\n {\r\n name: 'characteristics[age]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Age of the individual',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[enrichment process]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Enrichment process applied',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[pooled sample]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Pooled sample indicator',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[spiked compound]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Spiked compound details',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[synthetic peptide]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Synthetic peptide indicator',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[xenograft]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Xenograft description',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[source name]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Reference to source sample',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[individual]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Patient identifier',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[mass]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Sample mass',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[biological replicate]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Biological replicate number',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[phenotype]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Sample phenotype',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n {\r\n name: 'characteristics[compound]',\r\n type: ColumnType.CHARACTERISTICS,\r\n description: 'Compound applied',\r\n category: SdrfColumnCategory.CHARACTERISTICS\r\n },\r\n\r\n // Assay information\r\n {\r\n name: 'assay name',\r\n type: ColumnType.SPECIAL,\r\n description: 'MS run identifier',\r\n category: SdrfColumnCategory.ASSAY,\r\n isRequired: true\r\n },\r\n {\r\n name: 'technology type',\r\n type: ColumnType.SPECIAL,\r\n description: 'Technology used for data generation',\r\n category: SdrfColumnCategory.ASSAY,\r\n isRequired: true\r\n },\r\n\r\n // Required comment fields\r\n {\r\n name: 'comment[fraction identifier]',\r\n type: ColumnType.COMMENT,\r\n description: 'Fraction number',\r\n category: SdrfColumnCategory.COMMENTS\r\n },\r\n {\r\n name: 'comment[label]',\r\n type: ColumnType.COMMENT,\r\n description: 'Label applied to sample',\r\n category: SdrfColumnCategory.COMMENTS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'comment[data file]',\r\n type: ColumnType.COMMENT,\r\n description: 'Raw data file name',\r\n category: SdrfColumnCategory.COMMENTS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'comment[instrument]',\r\n type: ColumnType.COMMENT,\r\n description: 'Mass spectrometer model',\r\n category: SdrfColumnCategory.COMMENTS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'comment[technical replicate]',\r\n type: ColumnType.COMMENT,\r\n description: 'Technical replicate number',\r\n category: SdrfColumnCategory.COMMENTS\r\n },\r\n\r\n // Modification and enzyme information\r\n {\r\n name: 'comment[modification parameters]',\r\n type: ColumnType.COMMENT,\r\n description: 'Protein modifications',\r\n category: SdrfColumnCategory.MODIFICATIONS,\r\n isRequired: true\r\n },\r\n {\r\n name: 'comment[cleavage agent details]',\r\n type: ColumnType.COMMENT,\r\n description: 'Digestion enzyme information',\r\n category: SdrfColumnCategory.MODIFICATIONS,\r\n isRequired: true\r\n },\r\n\r\n // Mass tolerances\r\n {\r\n name: 'comment[fragment mass tolerance]',\r\n type: ColumnType.COMMENT,\r\n description: 'Fragment ion mass tolerance',\r\n category: SdrfColumnCategory.MASS_TOLERANCES\r\n },\r\n {\r\n name: 'comment[precursor mass tolerance]',\r\n type: ColumnType.COMMENT,\r\n description: 'Precursor ion mass tolerance',\r\n category: SdrfColumnCategory.MASS_TOLERANCES\r\n },\r\n\r\n // Additional technical parameters\r\n {\r\n name: 'comment[MS2 analyzer type]',\r\n type: ColumnType.COMMENT,\r\n description: 'MS2 analyzer type',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n {\r\n name: 'comment[collision energy]',\r\n type: ColumnType.COMMENT,\r\n description: 'Collision energy used',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n {\r\n name: 'comment[dissociation method]',\r\n type: ColumnType.COMMENT,\r\n description: 'Fragmentation method',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n {\r\n name: 'comment[proteomics data acquisition method]',\r\n type: ColumnType.COMMENT,\r\n description: 'DDA, DIA, etc.',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n {\r\n name: 'comment[MS1 scan range]',\r\n type: ColumnType.COMMENT,\r\n description: 'MS1 scan range for DIA',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n {\r\n name: 'comment[scan window lower limit]',\r\n type: ColumnType.COMMENT,\r\n description: 'Scan window lower limit',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n {\r\n name: 'comment[scan window upper limit]',\r\n type: ColumnType.COMMENT,\r\n description: 'Scan window upper limit',\r\n category: SdrfColumnCategory.TECHNICAL_PARAMS\r\n },\r\n\r\n // Sample preparation\r\n {\r\n name: 'comment[depletion]',\r\n type: ColumnType.COMMENT,\r\n description: 'Depletion method applied',\r\n category: SdrfColumnCategory.SAMPLE_PREP\r\n },\r\n {\r\n name: 'comment[reduction reagent]',\r\n type: ColumnType.COMMENT,\r\n description: 'Reduction reagent used',\r\n category: SdrfColumnCategory.SAMPLE_PREP\r\n },\r\n {\r\n name: 'comment[alkylation reagent]',\r\n type: ColumnType.COMMENT,\r\n description: 'Alkylation reagent used',\r\n category: SdrfColumnCategory.SAMPLE_PREP\r\n },\r\n {\r\n name: 'comment[fractionation method]',\r\n type: ColumnType.COMMENT,\r\n description: 'Fractionation method',\r\n category: SdrfColumnCategory.SAMPLE_PREP\r\n },\r\n\r\n // File and project information\r\n {\r\n name: 'comment[file uri]',\r\n type: ColumnType.COMMENT,\r\n description: 'Public URI of the file',\r\n category: SdrfColumnCategory.FILE_PROJECT\r\n },\r\n {\r\n name: 'comment[proteomexchange accession number]',\r\n type: ColumnType.COMMENT,\r\n description: 'ProteomeXchange accession',\r\n category: SdrfColumnCategory.FILE_PROJECT\r\n }\r\n];\r\n\r\n// Helper functions\r\nexport function getSdrfColumnsByCategory(category?: SdrfColumnCategory): SdrfColumnConfig[] {\r\n if (!category) {\r\n return OFFICIAL_SDRF_COLUMNS;\r\n }\r\n return OFFICIAL_SDRF_COLUMNS.filter(col => col.category === category);\r\n}\r\n\r\nexport function getRequiredSdrfColumns(): SdrfColumnConfig[] {\r\n return OFFICIAL_SDRF_COLUMNS.filter(col => col.isRequired === true);\r\n}\r\n\r\nexport function getSdrfColumnByName(name: string): SdrfColumnConfig \| undefined {\r\n return OFFICIAL_SDRF_COLUMNS.find(col => col.name.toLowerCase() === name.toLowerCase());\r\n}\r\n\r\nexport function isSdrfColumnRequired(name: string): boolean {\r\n const column = getSdrfColumnByName(name);\r\n return column?.isRequired === true;\r\n}","// Task status and type definitions\r\nexport type TaskStatus = 'QUEUED' \| 'STARTED' \| 'SUCCESS' \| 'FAILURE' \| 'CANCELLED';\r\n\r\nexport type TaskType =\r\n \| 'EXPORT_EXCEL'\r\n \| 'EXPORT_SDRF'\r\n \| 'IMPORT_SDRF'\r\n \| 'IMPORT_EXCEL'\r\n \| 'EXPORT_MULTIPLE_SDRF'\r\n \| 'EXPORT_MULTIPLE_EXCEL'\r\n \| 'VALIDATE_TABLE'\r\n \| 'REORDER_TABLE_COLUMNS'\r\n \| 'REORDER_TEMPLATE_COLUMNS';\r\n\r\nexport interface AsyncTaskStatus {\r\n id: string;\r\n taskType: TaskType;\r\n status: TaskStatus;\r\n user: number;\r\n userUsername?: string;\r\n metadataTable?: number;\r\n metadataTableName?: string;\r\n taskTypeDisplay?: string;\r\n statusDisplay?: string;\r\n parameters?: any;\r\n result?: any;\r\n errorMessage?: string;\r\n traceback?: string;\r\n createdAt: string;\r\n startedAt?: string;\r\n completedAt?: string;\r\n rqJobId?: string;\r\n queueName?: string;\r\n progressCurrent?: number;\r\n progressTotal?: number;\r\n progressDescription?: string;\r\n duration?: number;\r\n progressPercentage?: number;\r\n}\r\n\r\nexport interface TaskListItem {\r\n id: string;\r\n taskType: TaskType;\r\n taskTypeDisplay: string;\r\n status: TaskStatus;\r\n statusDisplay: string;\r\n user: number;\r\n userUsername: string;\r\n metadataTable: number \| null;\r\n metadataTableName: string \| null;\r\n progressPercentage: number;\r\n progressDescription: string;\r\n createdAt: string;\r\n startedAt: string \| null;\r\n completedAt: string \| null;\r\n duration: number \| null;\r\n errorMessage: string \| null;\r\n}\r\n\r\nexport interface TaskResult {\r\n id: number;\r\n task: string;\r\n file?: string;\r\n fileName?: string;\r\n contentType?: string;\r\n fileSize?: number;\r\n expiresAt: string;\r\n downloadCount?: number;\r\n lastDownloadedAt?: string;\r\n createdAt: string;\r\n}\r\n\r\n// Async Task Request/Response Interfaces\r\nexport interface MetadataExportRequest {\r\n metadataTableId: number;\r\n includePools?: boolean;\r\n metadataColumnIds?: number[];\r\n sampleNumber?: number;\r\n exportFormat?: string;\r\n labGroupIds?: number[];\r\n}\r\n\r\nexport interface BulkExportRequest {\r\n metadataTableIds: number[];\r\n includePools?: boolean;\r\n validateSdrf?: boolean;\r\n}\r\n\r\nexport interface BulkExcelExportRequest extends BulkExportRequest {\r\n metadataColumnIds?: number[];\r\n labGroupIds?: number[];\r\n}\r\n\r\nexport interface MetadataImportRequest {\r\n metadataTableId: number;\r\n file: File;\r\n replaceExisting?: boolean;\r\n validateOntologies?: boolean;\r\n}\r\n\r\nexport interface ChunkedImportRequest {\r\n metadataTableId: number;\r\n chunkedUploadId: string;\r\n replaceExisting?: boolean;\r\n validateOntologies?: boolean;\r\n createPools?: boolean;\r\n}\r\n\r\nexport interface MetadataValidationRequest {\r\n metadataTableId: number;\r\n validateSdrfFormat?: boolean;\r\n includePools?: boolean;\r\n}\r\n\r\nexport interface MetadataValidationConfig {\r\n metadataTableId: number;\r\n metadataTableName: string;\r\n}\r\n\r\nexport interface AsyncTaskCreateResponse {\r\n taskId: string;\r\n message: string;\r\n}\r\n\r\nexport interface DownloadUrlResponse {\r\n downloadUrl: string;\r\n filename: string;\r\n contentType: string;\r\n fileSize: number;\r\n expiresAt: string;\r\n expiresInHours: number;\r\n}\r\n\r\n// Query parameters for async tasks\r\nexport interface AsyncTaskQueryParams {\r\n taskType?: string;\r\n status?: string;\r\n metadataTable?: number;\r\n search?: string;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n// Helper constants\r\nexport const TASK_TYPE_LABELS: Record<TaskType, string> = {\r\n 'EXPORT_EXCEL': 'Export Excel Template',\r\n 'EXPORT_SDRF': 'Export SDRF File',\r\n 'IMPORT_SDRF': 'Import SDRF File',\r\n 'IMPORT_EXCEL': 'Import Excel File',\r\n 'EXPORT_MULTIPLE_SDRF': 'Export Multiple SDRF Files',\r\n 'EXPORT_MULTIPLE_EXCEL': 'Export Multiple Excel Templates',\r\n 'VALIDATE_TABLE': 'Validate Metadata Table',\r\n 'REORDER_TABLE_COLUMNS': 'Reorder Table Columns',\r\n 'REORDER_TEMPLATE_COLUMNS': 'Reorder Template Columns',\r\n};\r\n\r\nexport const TASK_STATUS_LABELS: Record<TaskStatus, string> = {\r\n 'QUEUED': 'Queued',\r\n 'STARTED': 'In Progress',\r\n 'SUCCESS': 'Completed',\r\n 'FAILURE': 'Failed',\r\n 'CANCELLED': 'Cancelled',\r\n};\r\n\r\nexport const TASK_STATUS_COLORS: Record<TaskStatus, string> = {\r\n 'QUEUED': 'secondary',\r\n 'STARTED': 'primary',\r\n 'SUCCESS': 'success',\r\n 'FAILURE': 'danger',\r\n 'CANCELLED': 'warning',\r\n};","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataTable,\r\n MetadataTableCreateRequest,\r\n MetadataTableUpdateRequest,\r\n MetadataTableQueryResponse,\r\n MetadataColumn,\r\n PaginatedResponse,\r\n SampleCountValidationRequest,\r\n SampleCountValidationResponse,\r\n SampleCountConfirmationError\r\n} from '../models';\r\n\r\nexport interface MetadataTableQueryParams {\r\n search?: string;\r\n ownerId?: number;\r\n labGroupId?: number;\r\n isPublished?: boolean;\r\n isLocked?: boolean;\r\n showShared?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class MetadataTableService extends BaseApiService {\r\n\r\n /*\r\n Get all metadata tables with optional filtering\r\n /\r\n getMetadataTables(params?: MetadataTableQueryParams): Observable<MetadataTableQueryResponse> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<MetadataTableQueryResponse>(`${this.apiUrl}/metadata-tables/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single metadata table by ID\r\n /\r\n getMetadataTable(id: number): Observable<MetadataTable> {\r\n return this.get<MetadataTable>(`${this.apiUrl}/metadata-tables/${id}/`);\r\n }\r\n\r\n /\r\n Create a new metadata table\r\n /\r\n createMetadataTable(table: MetadataTableCreateRequest): Observable<MetadataTable> {\r\n return this.post<MetadataTable>(`${this.apiUrl}/metadata-tables/`, table);\r\n }\r\n\r\n /\r\n Update an existing metadata table\r\n /\r\n updateMetadataTable(id: number, table: MetadataTableUpdateRequest): Observable<MetadataTable> {\r\n return this.put<MetadataTable>(`${this.apiUrl}/metadata-tables/${id}/`, table);\r\n }\r\n\r\n /\r\n Partially update a metadata table\r\n /\r\n patchMetadataTable(id: number, table: Partial<MetadataTableUpdateRequest>): Observable<MetadataTable> {\r\n return this.patch<MetadataTable>(`${this.apiUrl}/metadata-tables/${id}/`, table);\r\n }\r\n\r\n /\r\n Delete a metadata table\r\n /\r\n deleteMetadataTable(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/metadata-tables/${id}/`);\r\n }\r\n\r\n /\r\n Add a column to the metadata table\r\n /\r\n addColumn(id: number, columnData: any, position?: number): Observable<{ message: string; column: MetadataColumn }> {\r\n return this.post<{ message: string; column: MetadataColumn }>(`${this.apiUrl}/metadata-tables/${id}/add_column/`, {\r\n column_data: columnData,\r\n position\r\n });\r\n }\r\n\r\n /\r\n Add a column with automatic reordering\r\n /\r\n addColumnWithAutoReorder(id: number, request: { columnData: any }): Observable<{ message: string; column: MetadataColumn; reordered: boolean; schemaIdsUsed: number[] }> {\r\n return this.post<{ message: string; column: MetadataColumn; reordered: boolean; schemaIdsUsed: number[] }>(`${this.apiUrl}/metadata-tables/${id}/add_column_with_auto_reorder/`, request);\r\n }\r\n\r\n /\r\n Remove a column from the metadata table\r\n /\r\n removeColumn(id: number, columnId: number): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/metadata-tables/${id}/remove_column/`, {\r\n column_id: columnId\r\n });\r\n }\r\n\r\n /\r\n Reorder a column in the metadata table\r\n /\r\n reorderColumn(id: number, columnId: number, newPosition: number): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/metadata-tables/${id}/reorder_column/`, {\r\n column_id: columnId,\r\n new_position: newPosition\r\n });\r\n }\r\n\r\n /\r\n Normalize column positions\r\n /\r\n normalizeColumnPositions(id: number): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/metadata-tables/${id}/normalize_column_positions/`, {});\r\n }\r\n\r\n /\r\n Start async reordering of table columns by schema\r\n /\r\n reorderColumnsBySchemaAsync(id: number, schemaIds?: number[]): Observable<{\r\n taskId: string;\r\n message: string;\r\n metadataTableId: number;\r\n schemaIds: number[];\r\n }> {\r\n return this.post<{\r\n taskId: string;\r\n message: string;\r\n metadataTableId: number;\r\n schemaIds: number[];\r\n }>(`${this.apiUrl}/metadata-tables/${id}/reorder_columns_by_schema_async/`, {\r\n schemaIds: schemaIds \|\| []\r\n });\r\n }\r\n\r\n /\r\n Get all tables (admin only)\r\n /\r\n getAdminAllTables(): Observable<MetadataTable[]> {\r\n return this.get<MetadataTable[]>(`${this.apiUrl}/metadata-tables/admin_all_tables/`);\r\n }\r\n\r\n /\r\n Search metadata tables\r\n /\r\n searchMetadataTables(query: string): Observable<MetadataTableQueryResponse> {\r\n return this.getMetadataTables({ search: query });\r\n }\r\n\r\n /\r\n Get metadata tables by owner\r\n /\r\n getMetadataTablesByOwner(ownerId: number): Observable<MetadataTableQueryResponse> {\r\n return this.getMetadataTables({ ownerId: ownerId });\r\n }\r\n\r\n /\r\n Get shared metadata tables\r\n /\r\n getSharedMetadataTables(): Observable<MetadataTableQueryResponse> {\r\n return this.getMetadataTables({ showShared: true });\r\n }\r\n\r\n /\r\n Combine columns column-wise\r\n /\r\n combineColumnwise(request: { columnIds: number[] }): Observable<{ message: string; combinedColumn: any }> {\r\n return this.post<{ message: string; combinedColumn: any }>(`${this.apiUrl}/metadata-tables/combine_columnwise/`, request);\r\n }\r\n\r\n /\r\n Combine columns row-wise\r\n /\r\n combineRowwise(request: { columnIds: number[] }): Observable<{ message: string; combinedColumn: any }> {\r\n return this.post<{ message: string; combinedColumn: any }>(`${this.apiUrl}/metadata-tables/combine_rowwise/`, request);\r\n }\r\n\r\n validateSampleCountChange(id: number, request: SampleCountValidationRequest): Observable<SampleCountValidationResponse> {\r\n return this.post<SampleCountValidationResponse>(`${this.apiUrl}/metadata-tables/${id}/validate_sample_count_change/`, request);\r\n }\r\n\r\n updateSampleCount(id: number, newSampleCount: number, confirmed: boolean = false): Observable<{ message: string; oldSampleCount: number; newSampleCount: number; cleanupPerformed: boolean }> {\r\n return this.post<{ message: string; oldSampleCount: number; newSampleCount: number; cleanupPerformed: boolean }>(`${this.apiUrl}/metadata-tables/${id}/update_sample_count/`, {\r\n newSampleCount,\r\n confirmed\r\n });\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataColumn,\r\n MetadataColumnCreateRequest,\r\n MetadataColumnUpdateRequest,\r\n PaginatedResponse,\r\n OntologySuggestion\r\n} from '../models';\r\n\r\nexport interface MetadataColumnQueryParams {\r\n search?: string;\r\n metadataTableId?: number;\r\n type?: string;\r\n name?: string;\r\n hidden?: boolean;\r\n mandatory?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class MetadataColumnService extends BaseApiService {\r\n\r\n /\r\n Get all metadata columns with optional filtering\r\n /\r\n getMetadataColumns(params?: MetadataColumnQueryParams): Observable<PaginatedResponse<MetadataColumn>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<MetadataColumn>>(`${this.apiUrl}/metadata-columns/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single metadata column by ID\r\n /\r\n getMetadataColumn(id: number): Observable<MetadataColumn> {\r\n return this.get<MetadataColumn>(`${this.apiUrl}/metadata-columns/${id}/`);\r\n }\r\n\r\n /\r\n Create a new metadata column\r\n /\r\n createMetadataColumn(column: MetadataColumnCreateRequest): Observable<MetadataColumn> {\r\n return this.post<MetadataColumn>(`${this.apiUrl}/metadata-columns/`, column);\r\n }\r\n\r\n /\r\n Update an existing metadata column\r\n /\r\n updateMetadataColumn(id: number, column: MetadataColumnUpdateRequest): Observable<MetadataColumn> {\r\n return this.put<MetadataColumn>(`${this.apiUrl}/metadata-columns/${id}/`, column);\r\n }\r\n\r\n /\r\n Partially update a metadata column\r\n /\r\n patchMetadataColumn(id: number, column: Partial<MetadataColumnUpdateRequest>): Observable<MetadataColumn> {\r\n return this.patch<MetadataColumn>(`${this.apiUrl}/metadata-columns/${id}/`, column);\r\n }\r\n\r\n /\r\n Delete a metadata column\r\n /\r\n deleteMetadataColumn(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/metadata-columns/${id}/`);\r\n }\r\n\r\n /\r\n Bulk create metadata columns\r\n /\r\n bulkCreate(request: { columns: MetadataColumnCreateRequest[] }): Observable<MetadataColumn[]> {\r\n return this.post<MetadataColumn[]>(`${this.apiUrl}/metadata-columns/bulk_create/`, request);\r\n }\r\n\r\n /\r\n Validate SDRF data\r\n /\r\n validateSdrfData(request: { metadataIds: number[]; sampleNumber?: number }): Observable<{ valid: boolean; errors: any[]; sampleCount: number }> {\r\n return this.post<{ valid: boolean; errors: any[]; sampleCount: number }>(`${this.apiUrl}/metadata-columns/validate_sdrf_data/`, request);\r\n }\r\n\r\n /\r\n Get ontology suggestions for a column\r\n /\r\n getOntologySuggestions(params: { \r\n columnId: number; \r\n search?: string; \r\n limit?: number; \r\n searchType?: 'icontains' \| 'istartswith' \| 'exact';\r\n }): Observable<{\r\n ontologyType: string;\r\n suggestions: OntologySuggestion[];\r\n searchTerm: string;\r\n searchType: string;\r\n limit: number;\r\n count: number;\r\n customFilters: any;\r\n hasMore: boolean;\r\n }> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get(`${this.apiUrl}/metadata-columns/ontology_suggestions/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Validate value against column's ontology\r\n /\r\n validateValue(id: number, request: { value: string }): Observable<{ valid: boolean; value: string; ontologyType: string; suggestions?: any[] }> {\r\n return this.post(`${this.apiUrl}/metadata-columns/${id}/validate_value/`, request);\r\n }\r\n\r\n /\r\n Update column value with automatic modifier calculation\r\n /\r\n updateColumnValue(id: number, request: { \r\n value: string; \r\n sampleIndices?: number[]; \r\n valueType?: 'default' \| 'sample_specific' \| 'replace_all';\r\n }): Observable<{\r\n message: string;\r\n column: MetadataColumn;\r\n changes: any;\r\n valueType: string;\r\n }> {\r\n return this.post(`${this.apiUrl}/metadata-columns/${id}/update_column_value/`, request);\r\n }\r\n\r\n /\r\n Apply automatic ontology mapping to a column\r\n /\r\n applyOntologyMapping(id: number): Observable<{ applied: boolean; ontologyType: string; message: string }> {\r\n return this.post(`${this.apiUrl}/metadata-columns/${id}/apply_ontology_mapping/`, {});\r\n }\r\n\r\n /\r\n Detect ontology type for given column name and type\r\n /\r\n detectOntologyType(params: { name: string; type: string }): Observable<{ columnName: string; columnType: string; detectedOntologyType: string }> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get(`${this.apiUrl}/metadata-columns/detect_ontology_type/`, { params: httpParams });\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n SamplePool,\r\n SamplePoolCreateRequest,\r\n SamplePoolUpdateRequest,\r\n MetadataColumn,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\nexport interface SamplePoolQueryParams {\r\n search?: string;\r\n metadataTable?: number;\r\n isReference?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class SamplePoolService extends BaseApiService {\r\n\r\n /\r\n Get all sample pools with optional filtering\r\n /\r\n getSamplePools(params?: SamplePoolQueryParams): Observable<PaginatedResponse<SamplePool>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<SamplePool>>(`${this.apiUrl}/sample-pools/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single sample pool by ID\r\n /\r\n getSamplePool(id: number): Observable<SamplePool> {\r\n return this.get<SamplePool>(`${this.apiUrl}/sample-pools/${id}/`);\r\n }\r\n\r\n /\r\n Create a new sample pool\r\n /\r\n createSamplePool(pool: SamplePoolCreateRequest): Observable<SamplePool> {\r\n return this.post<SamplePool>(`${this.apiUrl}/sample-pools/`, pool);\r\n }\r\n\r\n /\r\n Update an existing sample pool\r\n /\r\n updateSamplePool(id: number, pool: SamplePoolUpdateRequest): Observable<SamplePool> {\r\n return this.put<SamplePool>(`${this.apiUrl}/sample-pools/${id}/`, pool);\r\n }\r\n\r\n /\r\n Partially update a sample pool\r\n /\r\n patchSamplePool(id: number, pool: Partial<SamplePoolUpdateRequest>): Observable<SamplePool> {\r\n return this.patch<SamplePool>(`${this.apiUrl}/sample-pools/${id}/`, pool);\r\n }\r\n\r\n /\r\n Delete a sample pool\r\n /\r\n deleteSamplePool(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/sample-pools/${id}/`);\r\n }\r\n\r\n /\r\n Get metadata columns associated with this pool\r\n /\r\n getMetadataColumns(id: number): Observable<MetadataColumn[]> {\r\n return this.get<MetadataColumn[]>(`${this.apiUrl}/sample-pools/${id}/metadata_columns/`);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataTableTemplate,\r\n MetadataTableTemplateCreateRequest,\r\n MetadataTableTemplateUpdateRequest,\r\n MetadataTableTemplateQueryResponse,\r\n MetadataTable,\r\n MetadataColumn,\r\n Schema,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\nexport interface MetadataTableTemplateQueryParams {\r\n search?: string;\r\n ownerId?: number;\r\n labGroupId?: number;\r\n visibility?: string;\r\n isDefault?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class MetadataTableTemplateService extends BaseApiService {\r\n\r\n /\r\n Get all metadata table templates with optional filtering\r\n /\r\n getMetadataTableTemplates(params?: MetadataTableTemplateQueryParams): Observable<MetadataTableTemplateQueryResponse> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<MetadataTableTemplateQueryResponse>(`${this.apiUrl}/metadata-table-templates/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single metadata table template by ID\r\n /\r\n getMetadataTableTemplate(id: number): Observable<MetadataTableTemplate> {\r\n return this.get<MetadataTableTemplate>(`${this.apiUrl}/metadata-table-templates/${id}/`);\r\n }\r\n\r\n /\r\n Create a new metadata table template\r\n /\r\n createMetadataTableTemplate(template: MetadataTableTemplateCreateRequest): Observable<MetadataTableTemplate> {\r\n return this.post<MetadataTableTemplate>(`${this.apiUrl}/metadata-table-templates/`, template);\r\n }\r\n\r\n /\r\n Update an existing metadata table template\r\n /\r\n updateMetadataTableTemplate(id: number, template: MetadataTableTemplateUpdateRequest): Observable<MetadataTableTemplate> {\r\n return this.put<MetadataTableTemplate>(`${this.apiUrl}/metadata-table-templates/${id}/`, template);\r\n }\r\n\r\n /\r\n Partially update a metadata table template\r\n /\r\n patchMetadataTableTemplate(id: number, template: Partial<MetadataTableTemplateUpdateRequest>): Observable<MetadataTableTemplate> {\r\n return this.patch<MetadataTableTemplate>(`${this.apiUrl}/metadata-table-templates/${id}/`, template);\r\n }\r\n\r\n /\r\n Delete a metadata table template\r\n /\r\n deleteMetadataTableTemplate(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/metadata-table-templates/${id}/`);\r\n }\r\n\r\n /\r\n Add a column to the template\r\n /\r\n addColumn(id: number, request: { column_data: any; position?: number }): Observable<{ message: string; column: MetadataColumn }> {\r\n return this.post<{ message: string; column: MetadataColumn }>(`${this.apiUrl}/metadata-table-templates/${id}/add_column/`, request);\r\n }\r\n\r\n /\r\n Remove a column from the template\r\n /\r\n removeColumn(id: number, request: { column_id: number }): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/metadata-table-templates/${id}/remove_column/`, request);\r\n }\r\n\r\n /\r\n Reorder a column within the template\r\n /\r\n reorderColumn(id: number, request: { column_id: number; new_position: number }): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/metadata-table-templates/${id}/reorder_column/`, request);\r\n }\r\n\r\n /\r\n Add a column with automatic reordering\r\n /\r\n addColumnWithAutoReorder(id: number, request: { columnData: any }): Observable<{ message: string; column: MetadataColumn; reordered: boolean; schemaIdsUsed: number[] }> {\r\n return this.post<{ message: string; column: MetadataColumn; reordered: boolean; schemaIdsUsed: number[] }>(`${this.apiUrl}/metadata-table-templates/${id}/add_column_with_auto_reorder/`, request);\r\n }\r\n\r\n /\r\n Duplicate a column within the template\r\n /\r\n duplicateColumn(id: number, request: { column_id: number }): Observable<{ message: string; duplicated_column: MetadataColumn }> {\r\n return this.post<{ message: string; duplicated_column: MetadataColumn }>(`${this.apiUrl}/metadata-table-templates/${id}/duplicate_column/`, request);\r\n }\r\n\r\n /\r\n Normalize column positions\r\n /\r\n normalizeColumnPositions(id: number): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/metadata-table-templates/${id}/normalize_column_positions/`, {});\r\n }\r\n\r\n /\r\n Start async reordering of template columns by schema\r\n /\r\n reorderColumnsBySchemaAsync(id: number, schemaIds?: number[]): Observable<{\r\n taskId: string;\r\n message: string;\r\n templateId: number;\r\n schemaIds: number[];\r\n }> {\r\n return this.post<{\r\n taskId: string;\r\n message: string;\r\n templateId: number;\r\n schemaIds: number[];\r\n }>(`${this.apiUrl}/metadata-table-templates/${id}/reorder_columns_by_schema_async/`, {\r\n schemaIds: schemaIds \|\| []\r\n });\r\n }\r\n\r\n /\r\n Apply this template to a metadata table\r\n /\r\n applyToMetadataTable(id: number, request: { metadata_table_id: number }): Observable<{ message: string; applied_columns: MetadataColumn[] }> {\r\n return this.post<{ message: string; applied_columns: MetadataColumn[] }>(`${this.apiUrl}/metadata-table-templates/${id}/apply_to_metadata_table/`, request);\r\n }\r\n\r\n /\r\n Update field mask for template\r\n /\r\n updateFieldMask(id: number, request: { field_mask: any }): Observable<{ message: string; field_mask: any }> {\r\n return this.post<{ message: string; field_mask: any }>(`${this.apiUrl}/metadata-table-templates/${id}/update_field_mask/`, request);\r\n }\r\n\r\n /\r\n Get field mask for template\r\n /\r\n getFieldMask(id: number): Observable<{ field_mask: any }> {\r\n return this.get<{ field_mask: any }>(`${this.apiUrl}/metadata-table-templates/${id}/get_field_mask/`);\r\n }\r\n\r\n /\r\n Get columns with field masks\r\n /\r\n getColumnsWithFieldMasks(id: number): Observable<{ columns: any[] }> {\r\n return this.get<{ columns: any[] }>(`${this.apiUrl}/metadata-table-templates/${id}/get_columns_with_field_masks/`);\r\n }\r\n\r\n /\r\n Get available schemas for creating templates\r\n /\r\n getAvailableSchemas(): Observable<Schema[]> {\r\n return this.get<Schema[]>(`${this.apiUrl}/metadata-table-templates/available_schemas/`);\r\n }\r\n\r\n /\r\n Create a new template from schema definitions\r\n /\r\n createFromSchema(request: { schemaIds: number[]; name: string; description?: string }): Observable<{ message: string; template: MetadataTableTemplate }> {\r\n return this.post<{ message: string; template: MetadataTableTemplate }>(`${this.apiUrl}/metadata-table-templates/create_from_schema/`, request);\r\n }\r\n\r\n /\r\n Create a new metadata table from an existing template\r\n /\r\n createTableFromTemplate(request: { templateId: number; name: string; description?: string; sampleCount: number }): Observable<MetadataTable> {\r\n return this.post<MetadataTable>(`${this.apiUrl}/metadata-table-templates/create_table_from_template/`, request);\r\n }\r\n\r\n /\r\n Create a new metadata table directly from schema definitions\r\n /\r\n createTableFromSchemas(request: { schemaIds: number[]; name: string; description?: string; sampleCount: number }): Observable<MetadataTable> {\r\n return this.post<MetadataTable>(`${this.apiUrl}/metadata-table-templates/create_table_from_schemas/`, request);\r\n }\r\n}\r\n","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n FavouriteMetadataOption,\r\n FavouriteMetadataOptionCreateRequest,\r\n FavouriteMetadataOptionUpdateRequest,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\nexport interface FavouriteMetadataOptionQueryParams {\r\n search?: string;\r\n name?: string;\r\n type?: string;\r\n userId?: number;\r\n labGroupId?: number;\r\n isGlobal?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class FavouriteMetadataOptionService extends BaseApiService {\r\n\r\n /\r\n Get all favourite metadata options with optional filtering\r\n /\r\n getFavouriteMetadataOptions(params?: FavouriteMetadataOptionQueryParams): Observable<PaginatedResponse<FavouriteMetadataOption>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<FavouriteMetadataOption>>(`${this.apiUrl}/favourite-options/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single favourite metadata option by ID\r\n /\r\n getFavouriteMetadataOption(id: number): Observable<FavouriteMetadataOption> {\r\n return this.get<FavouriteMetadataOption>(`${this.apiUrl}/favourite-options/${id}/`);\r\n }\r\n\r\n /\r\n Create a new favourite metadata option\r\n /\r\n createFavouriteMetadataOption(option: FavouriteMetadataOptionCreateRequest): Observable<FavouriteMetadataOption> {\r\n return this.post<FavouriteMetadataOption>(`${this.apiUrl}/favourite-options/`, option);\r\n }\r\n\r\n /\r\n Update an existing favourite metadata option\r\n /\r\n updateFavouriteMetadataOption(id: number, option: FavouriteMetadataOptionUpdateRequest): Observable<FavouriteMetadataOption> {\r\n return this.put<FavouriteMetadataOption>(`${this.apiUrl}/favourite-options/${id}/`, option);\r\n }\r\n\r\n /\r\n Partially update a favourite metadata option\r\n /\r\n patchFavouriteMetadataOption(id: number, option: Partial<FavouriteMetadataOptionUpdateRequest>): Observable<FavouriteMetadataOption> {\r\n return this.patch<FavouriteMetadataOption>(`${this.apiUrl}/favourite-options/${id}/`, option);\r\n }\r\n\r\n /\r\n Delete a favourite metadata option\r\n /\r\n deleteFavouriteMetadataOption(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/favourite-options/${id}/`);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataColumnTemplate,\r\n MetadataColumnTemplateCreateRequest,\r\n MetadataColumnTemplateUpdateRequest,\r\n MetadataColumn,\r\n OntologySuggestion,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\nexport interface MetadataColumnTemplateQueryParams {\r\n search?: string;\r\n type?: string;\r\n ontologyType?: string;\r\n isRequired?: boolean;\r\n isPublic?: boolean;\r\n ownerId?: number;\r\n labGroupId?: number;\r\n visibility?: string;\r\n isActive?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class MetadataColumnTemplateService extends BaseApiService {\r\n\r\n /\r\n Get all metadata column templates with optional filtering\r\n /\r\n getMetadataColumnTemplates(params?: MetadataColumnTemplateQueryParams): Observable<PaginatedResponse<MetadataColumnTemplate>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<MetadataColumnTemplate>>(`${this.apiUrl}/column-templates/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single metadata column template by ID\r\n /\r\n getMetadataColumnTemplate(id: number): Observable<MetadataColumnTemplate> {\r\n return this.get<MetadataColumnTemplate>(`${this.apiUrl}/column-templates/${id}/`);\r\n }\r\n\r\n /\r\n Create a new metadata column template\r\n /\r\n createMetadataColumnTemplate(template: MetadataColumnTemplateCreateRequest): Observable<MetadataColumnTemplate> {\r\n return this.post<MetadataColumnTemplate>(`${this.apiUrl}/column-templates/`, template);\r\n }\r\n\r\n /\r\n Update an existing metadata column template\r\n /\r\n updateMetadataColumnTemplate(id: number, template: MetadataColumnTemplateUpdateRequest): Observable<MetadataColumnTemplate> {\r\n return this.put<MetadataColumnTemplate>(`${this.apiUrl}/column-templates/${id}/`, template);\r\n }\r\n\r\n /\r\n Partially update a metadata column template\r\n /\r\n patchMetadataColumnTemplate(id: number, template: Partial<MetadataColumnTemplateUpdateRequest>): Observable<MetadataColumnTemplate> {\r\n return this.patch<MetadataColumnTemplate>(`${this.apiUrl}/column-templates/${id}/`, template);\r\n }\r\n\r\n /\r\n Delete a metadata column template\r\n /\r\n deleteMetadataColumnTemplate(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/column-templates/${id}/`);\r\n }\r\n\r\n /\r\n Create a MetadataColumn from this template\r\n /\r\n createMetadataColumn(id: number, request: { metadataTableId: number; columnPosition?: number }): Observable<{ message: string; column: MetadataColumn }> {\r\n return this.post<{ message: string; column: MetadataColumn }>(`${this.apiUrl}/column-templates/${id}/create_metadata_column/`, request);\r\n }\r\n\r\n /\r\n Share this template with another user\r\n /\r\n shareTemplate(id: number, request: { userId: number; canEdit?: boolean }): Observable<{ message: string }> {\r\n return this.post<{ message: string }>(`${this.apiUrl}/column-templates/${id}/share_template/`, request);\r\n }\r\n\r\n /\r\n Remove template sharing for a user\r\n /\r\n unshareTemplate(id: number, request: { userId: number }): Observable<{ message: string }> {\r\n return this.delete<{ message: string }>(`${this.apiUrl}/column-templates/${id}/unshare_template/`, { body: request });\r\n }\r\n\r\n /\r\n Get templates created by the current user\r\n /\r\n getMyTemplates(): Observable<MetadataColumnTemplate[]> {\r\n return this.get<MetadataColumnTemplate[]>(`${this.apiUrl}/column-templates/my_templates/`);\r\n }\r\n\r\n /\r\n Get most popular public templates\r\n /\r\n getPopularTemplates(): Observable<MetadataColumnTemplate[]> {\r\n return this.get<MetadataColumnTemplate[]>(`${this.apiUrl}/column-templates/popular_templates/`);\r\n }\r\n\r\n /\r\n Get ontology suggestions for this column template\r\n /\r\n getOntologySuggestions(params?: { \r\n search?: string; \r\n templateId?: number;\r\n limit?: number;\r\n searchType?: 'icontains' \| 'istartswith' \| 'exact';\r\n }): Observable<{\r\n ontologyType: string;\r\n suggestions: OntologySuggestion[];\r\n searchTerm: string;\r\n searchType: string;\r\n limit: number;\r\n count: number;\r\n customFilters: any;\r\n hasMore: boolean;\r\n }> {\r\n const httpParams = this.buildHttpParams({\r\n template_id: params?.templateId,\r\n search: params?.search,\r\n limit: params?.limit,\r\n search_type: params?.searchType\r\n });\r\n return this.get<{\r\n ontologyType: string;\r\n suggestions: OntologySuggestion[];\r\n searchTerm: string;\r\n searchType: string;\r\n limit: number;\r\n count: number;\r\n customFilters: any;\r\n hasMore: boolean;\r\n }>(`${this.apiUrl}/column-templates/ontology_suggestions/`, { params: httpParams });\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataColumnTemplateShare,\r\n MetadataColumnTemplateShareCreateRequest,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\nexport interface MetadataColumnTemplateShareQueryParams {\r\n template?: number;\r\n sharedWith?: number;\r\n sharedBy?: number;\r\n canEdit?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class MetadataColumnTemplateShareService extends BaseApiService {\r\n\r\n /\r\n Get all template shares with optional filtering\r\n /\r\n getMetadataColumnTemplateShares(params?: MetadataColumnTemplateShareQueryParams): Observable<PaginatedResponse<MetadataColumnTemplateShare>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<MetadataColumnTemplateShare>>(`${this.apiUrl}/template-shares/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single template share by ID\r\n /\r\n getMetadataColumnTemplateShare(id: number): Observable<MetadataColumnTemplateShare> {\r\n return this.get<MetadataColumnTemplateShare>(`${this.apiUrl}/template-shares/${id}/`);\r\n }\r\n\r\n /\r\n Create a new template share\r\n /\r\n createMetadataColumnTemplateShare(share: MetadataColumnTemplateShareCreateRequest): Observable<MetadataColumnTemplateShare> {\r\n return this.post<MetadataColumnTemplateShare>(`${this.apiUrl}/template-shares/`, share);\r\n }\r\n\r\n /\r\n Update an existing template share\r\n /\r\n updateMetadataColumnTemplateShare(id: number, share: { canEdit?: boolean }): Observable<MetadataColumnTemplateShare> {\r\n return this.put<MetadataColumnTemplateShare>(`${this.apiUrl}/template-shares/${id}/`, share);\r\n }\r\n\r\n /\r\n Delete a template share\r\n /\r\n deleteMetadataColumnTemplateShare(id: number): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/template-shares/${id}/`);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class MetadataManagementService extends BaseApiService {\r\n\r\n /\r\n Export metadata as Excel template (matching original CUPCAKE)\r\n /\r\n exportExcelTemplate(request: any): Observable<Blob> {\r\n return this.post(`${this.apiUrl}/metadata-management/export_excel_template/`, request, { responseType: 'blob' });\r\n }\r\n\r\n /\r\n Import metadata from SDRF file with intelligent column matching and schema organization\r\n /\r\n importSdrfFile(file: File, additionalData?: any): Observable<any> {\r\n const formData = new FormData();\r\n formData.append('file', file);\r\n if (additionalData) {\r\n Object.keys(additionalData).forEach(key => {\r\n formData.append(key, additionalData[key]);\r\n });\r\n }\r\n return this.post<any>(`${this.apiUrl}/metadata-management/import_sdrf_file/`, formData);\r\n }\r\n\r\n /\r\n Import metadata from Excel file (matching original CUPCAKE)\r\n /\r\n importExcelFile(file: File, additionalData?: any): Observable<any> {\r\n const formData = new FormData();\r\n formData.append('file', file);\r\n if (additionalData) {\r\n Object.keys(additionalData).forEach(key => {\r\n formData.append(key, additionalData[key]);\r\n });\r\n }\r\n return this.post<any>(`${this.apiUrl}/metadata-management/import_excel_file/`, formData);\r\n }\r\n\r\n /\r\n Collect metadata from metadata table\r\n /\r\n collectMetadata(params: any): Observable<any> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<any>(`${this.apiUrl}/metadata-management/collect_metadata/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Export metadata as SDRF file (matching original CUPCAKE)\r\n /\r\n exportSdrfFile(request: any): Observable<Blob> {\r\n return this.post(`${this.apiUrl}/metadata-management/export_sdrf_file/`, request, { responseType: 'blob' });\r\n }\r\n}","import { Injectable } from '@angular/core';\nimport { Observable } from 'rxjs';\nimport { WebSocketService as BaseWebSocketService, WebSocketMessage, AuthService, WEBSOCKET_ENDPOINT } from '@noatgnu/cupcake-core';\n\nexport type { WebSocketMessage };\n\n@Injectable({\n providedIn: 'root'\n})\nexport class Websocket extends BaseWebSocketService {\n\n constructor(authService: AuthService) {\n super(authService);\n this.endpoint = 'ccv/notifications';\n this.config.endpoint = 'ccv/notifications';\n this.config.url = this.getWebSocketUrl();\n }\n\n\n getMetadataTableUpdates(): Observable<WebSocketMessage> {\n return this.filterMessages('metadata_table.update');\n }\n\n getLabGroupUpdates(): Observable<WebSocketMessage> {\n return this.filterMessages('lab_group.update');\n }\n}\n","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { WebSocketService as BaseWebSocketService, WebSocketMessage, AuthService } from '@noatgnu/cupcake-core';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class AdminWebSocketService extends BaseWebSocketService {\r\n\r\n constructor(authService: AuthService) {\r\n super(authService);\r\n this.endpoint = 'ccv/admin';\r\n this.config.endpoint = 'ccv/admin';\r\n this.config.url = this.getWebSocketUrl();\r\n }\r\n\r\n getAdminNotifications(): Observable<WebSocketMessage> {\r\n return this.filterMessages('admin.notification');\r\n }\r\n\r\n override getSystemNotifications(): Observable<WebSocketMessage> {\r\n return this.filterMessages('system.notification');\r\n }\r\n}","import { Injectable, signal, computed, inject } from '@angular/core';\r\nimport { NotificationService as BaseNotificationService, NotificationItem, ToastService } from '@noatgnu/cupcake-core';\r\nimport { Websocket, WebSocketMessage } from './websocket';\r\nimport { AdminWebSocketService } from './admin-websocket';\r\n\r\nexport enum NotificationType {\r\n SYSTEM = 'system',\r\n METADATA_TABLE = 'metadata_table',\r\n LAB_GROUP = 'lab_group',\r\n FILE_UPLOAD = 'file_upload',\r\n DATA_PROCESSING = 'data_processing',\r\n ASYNC_TASK = 'async_task',\r\n USER = 'user'\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class NotificationService extends BaseNotificationService {\r\n private isConnected = signal(false);\r\n private isAdminConnected = signal(false);\r\n\r\n readonly isWebSocketConnected = computed(() => this.isConnected());\r\n readonly isAdminWebSocketConnected = computed(() => this.isAdminConnected());\r\n\r\n constructor(\r\n private websocketService: Websocket,\r\n private adminWebSocketService: AdminWebSocketService,\r\n toastService: ToastService\r\n ) {\r\n super(toastService);\r\n this.initializeWebSocket();\r\n }\r\n\r\n private initializeWebSocket(): void {\r\n this.websocketService.isConnected$.subscribe(connected => {\r\n this.isConnected.set(connected);\r\n if (connected) {\r\n console.log('CCV WebSocket connected - notifications active');\r\n }\r\n });\r\n\r\n this.adminWebSocketService.isConnected$.subscribe(connected => {\r\n this.isAdminConnected.set(connected);\r\n if (connected) {\r\n console.log('CCV Admin WebSocket connected - admin notifications active');\r\n }\r\n });\r\n\r\n this.websocketService.messages$.subscribe(message => {\r\n this.handleWebSocketMessage(message);\r\n });\r\n\r\n this.adminWebSocketService.messages$.subscribe(message => {\r\n this.handleAdminWebSocketMessage(message);\r\n });\r\n\r\n this.setupNotificationHandlers();\r\n }\r\n\r\n private setupNotificationHandlers(): void {\r\n this.websocketService.getSystemNotifications().subscribe(message => {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.SYSTEM);\r\n this.addNotification(notification);\r\n\r\n if (message['level'] === 'error') {\r\n this.toastService.error(message.message \|\| message['title']);\r\n } else if (message['level'] === 'warning') {\r\n this.toastService.warning(message.message \|\| message['title']);\r\n } else if (message['level'] === 'success') {\r\n this.toastService.success(message.message \|\| message['title']);\r\n } else {\r\n this.toastService.info(message.message \|\| message['title']);\r\n }\r\n });\r\n\r\n this.adminWebSocketService.getAdminNotifications().subscribe(message => {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.SYSTEM);\r\n this.addNotification(notification);\r\n\r\n const level = message['level'] \|\| 'info';\r\n const title = message['title'] \|\| 'Admin Notification';\r\n const messageText = message.message \|\| '';\r\n\r\n if (level === 'error') {\r\n this.toastService.error(`${title}: ${messageText}`, 10000);\r\n } else if (level === 'warning') {\r\n this.toastService.warning(`${title}: ${messageText}`, 8000);\r\n } else if (level === 'success') {\r\n this.toastService.success(`${title}: ${messageText}`, 6000);\r\n } else {\r\n this.toastService.info(`${title}: ${messageText}`, 5000);\r\n }\r\n });\r\n\r\n this.websocketService.getMetadataTableUpdates().subscribe(message => {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.METADATA_TABLE);\r\n this.addNotification(notification);\r\n });\r\n\r\n this.websocketService.getLabGroupUpdates().subscribe(message => {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.LAB_GROUP);\r\n this.addNotification(notification);\r\n });\r\n\r\n this.websocketService.filterMessages('async_task.update').subscribe(message => {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.ASYNC_TASK);\r\n this.addNotification(notification);\r\n });\r\n\r\n this.websocketService.filterMessages('notification_message').subscribe(message => {\r\n const notificationData = message['message'] \|\| message;\r\n\r\n let notificationType = 'info';\r\n let title = 'Notification';\r\n let messageText = '';\r\n\r\n if (typeof notificationData === 'object' && notificationData !== null) {\r\n notificationType = (notificationData as any)['type'] \|\| 'info';\r\n title = (notificationData as any)['title'] \|\| 'Notification';\r\n messageText = (notificationData as any)['message'] \|\| '';\r\n } else if (typeof notificationData === 'string') {\r\n messageText = notificationData;\r\n }\r\n\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.SYSTEM);\r\n this.addNotification(notification);\r\n\r\n if (notificationType === 'error') {\r\n this.toastService.error(`${title}: ${messageText}`, 8000);\r\n } else if (notificationType === 'warning') {\r\n this.toastService.warning(`${title}: ${messageText}`, 6000);\r\n } else if (notificationType === 'success') {\r\n this.toastService.success(`${title}: ${messageText}`, 5000);\r\n } else {\r\n this.toastService.info(`${title}: ${messageText}`, 4000);\r\n }\r\n });\r\n }\r\n\r\n private handleWebSocketMessage(message: WebSocketMessage): void {\r\n if (message.type === 'connection.established') {\r\n console.log('WebSocket connection established:', message);\r\n return;\r\n }\r\n\r\n if (message.type.includes('file.upload')) {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.FILE_UPLOAD);\r\n this.addNotification(notification);\r\n\r\n if (message.type === 'file.upload.completed') {\r\n this.toastService.success(`File upload completed: ${message['filename']}`);\r\n } else if (message.type === 'file.upload.failed') {\r\n this.toastService.error(`File upload failed: ${message['filename']}`);\r\n }\r\n } else if (message.type.includes('data.processing')) {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.DATA_PROCESSING);\r\n this.addNotification(notification);\r\n\r\n if (message.type === 'data.processing.completed') {\r\n this.toastService.success('Data processing completed');\r\n } else if (message.type === 'data.processing.failed') {\r\n this.toastService.error('Data processing failed');\r\n }\r\n }\r\n }\r\n\r\n private createNotificationFromWebSocket(message: WebSocketMessage, type: NotificationType): NotificationItem {\r\n const id = this.generateNotificationId();\r\n const timestamp = message.timestamp ? new Date(message.timestamp) : new Date();\r\n\r\n let title = '';\r\n let level: 'info' \| 'success' \| 'warning' \| 'error' = 'info';\r\n\r\n switch (type) {\r\n case NotificationType.SYSTEM:\r\n title = message['title'] \|\| 'System Notification';\r\n level = (message['level'] as any) \|\| 'info';\r\n break;\r\n case NotificationType.METADATA_TABLE:\r\n title = 'Metadata Table Update';\r\n level = message['action'] === 'deleted' ? 'warning' : 'info';\r\n break;\r\n case NotificationType.LAB_GROUP:\r\n title = 'Lab Group Update';\r\n level = 'info';\r\n break;\r\n case NotificationType.FILE_UPLOAD:\r\n title = 'File Upload';\r\n level = message.type.includes('failed') ? 'error' : 'success';\r\n break;\r\n case NotificationType.DATA_PROCESSING:\r\n title = 'Data Processing';\r\n level = message.type.includes('failed') ? 'error' : 'success';\r\n break;\r\n case NotificationType.ASYNC_TASK:\r\n title = this.getAsyncTaskTitle(message);\r\n level = this.getAsyncTaskLevel(message);\r\n break;\r\n default:\r\n title = 'Notification';\r\n }\r\n\r\n return {\r\n id,\r\n type,\r\n title,\r\n message: message.message \|\| '',\r\n timestamp,\r\n read: false,\r\n level,\r\n autoClose: level === 'success' \|\| level === 'info',\r\n data: message\r\n };\r\n }\r\n\r\n private getAsyncTaskTitle(message: WebSocketMessage): string {\r\n const taskType = message['task_type'];\r\n const status = message['status'];\r\n\r\n let operation = 'Task';\r\n switch (taskType) {\r\n case 'EXPORT_EXCEL':\r\n operation = 'Excel Export';\r\n break;\r\n case 'EXPORT_SDRF':\r\n operation = 'SDRF Export';\r\n break;\r\n case 'IMPORT_SDRF':\r\n operation = 'SDRF Import';\r\n break;\r\n case 'IMPORT_EXCEL':\r\n operation = 'Excel Import';\r\n break;\r\n case 'EXPORT_MULTIPLE_SDRF':\r\n operation = 'Bulk SDRF Export';\r\n break;\r\n case 'EXPORT_MULTIPLE_EXCEL':\r\n operation = 'Bulk Excel Export';\r\n break;\r\n case 'VALIDATE_TABLE':\r\n operation = 'Table Validation';\r\n break;\r\n case 'REORDER_TABLE_COLUMNS':\r\n operation = 'Column Reordering';\r\n break;\r\n case 'REORDER_TEMPLATE_COLUMNS':\r\n operation = 'Template Column Reordering';\r\n break;\r\n }\r\n\r\n switch (status) {\r\n case 'QUEUED':\r\n return `${operation} Queued`;\r\n case 'STARTED':\r\n return `${operation} In Progress`;\r\n case 'SUCCESS':\r\n return `${operation} Completed`;\r\n case 'FAILURE':\r\n return `${operation} Failed`;\r\n case 'CANCELLED':\r\n return `${operation} Cancelled`;\r\n default:\r\n return `${operation} Update`;\r\n }\r\n }\r\n\r\n private getAsyncTaskLevel(message: WebSocketMessage): 'info' \| 'success' \| 'warning' \| 'error' {\r\n const status = message['status'];\r\n\r\n switch (status) {\r\n case 'SUCCESS':\r\n return 'success';\r\n case 'FAILURE':\r\n return 'error';\r\n case 'CANCELLED':\r\n return 'warning';\r\n case 'STARTED':\r\n case 'QUEUED':\r\n default:\r\n return 'info';\r\n }\r\n }\r\n\r\n private handleAdminWebSocketMessage(message: WebSocketMessage): void {\r\n if (message.type === 'admin.notification') {\r\n const notification = this.createNotificationFromWebSocket(message, NotificationType.SYSTEM);\r\n this.addNotification(notification);\r\n }\r\n }\r\n\r\n connect(): void {\r\n this.websocketService.connect();\r\n }\r\n\r\n connectAdmin(): void {\r\n this.adminWebSocketService.connect();\r\n }\r\n\r\n disconnect(): void {\r\n this.websocketService.disconnect();\r\n }\r\n\r\n disconnectAdmin(): void {\r\n this.adminWebSocketService.disconnect();\r\n }\r\n\r\n subscribeToMetadataTable(tableId: number): void {\r\n this.websocketService.subscribe('metadata_table_updates', { table_id: tableId });\r\n }\r\n\r\n createVanillaNotification(\r\n type: NotificationType,\r\n title: string,\r\n message: string,\r\n level: 'info' \| 'success' \| 'warning' \| 'error' = 'info',\r\n autoClose = true\r\n ): void {\r\n this.createLocalNotification(type, title, message, level, autoClose);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n OntologySuggestion\r\n} from '../models';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class OntologySearchService extends BaseApiService {\r\n\r\n /\r\n Get ontology suggestions across all sources for SDRF validation\r\n /\r\n suggest(params?: { query?: string; sources?: string[] }): Observable<OntologySuggestion[]> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<OntologySuggestion[]>(`${this.apiUrl}/ontology-search/suggest/`, { params: httpParams });\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n Schema,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\nexport interface SchemaQueryParams {\r\n search?: string;\r\n category?: string;\r\n isActive?: boolean;\r\n limit?: number;\r\n offset?: number;\r\n ordering?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class SchemaService extends BaseApiService {\r\n\r\n /\r\n Get all schemas with optional filtering\r\n /\r\n getSchemas(params?: SchemaQueryParams): Observable<PaginatedResponse<Schema>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<Schema>>(`${this.apiUrl}/schemas/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a single schema by ID\r\n /\r\n getSchema(id: number): Observable<Schema> {\r\n return this.get<Schema>(`${this.apiUrl}/schemas/${id}/`);\r\n }\r\n\r\n /\r\n Get list of available schemas for creating templates\r\n /\r\n getAvailableSchemas(): Observable<Schema[]> {\r\n return this.get<Schema[]>(`${this.apiUrl}/schemas/available/`);\r\n }\r\n\r\n /\r\n Sync builtin schemas from sdrf-pipelines package (admin only)\r\n /\r\n syncBuiltin(): Observable<{ message: string; synced_count: number }> {\r\n return this.post<{ message: string; synced_count: number }>(`${this.apiUrl}/schemas/sync_builtin/`, {});\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class SDRFDefaultsService extends BaseApiService {\r\n\r\n /\r\n Get all available SDRF columns with their default values\r\n /\r\n getColumns(): Observable<any[]> {\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/columns/`);\r\n }\r\n\r\n /\r\n Get default values for a specific column\r\n /\r\n getColumnValues(params: { column: string }): Observable<any[]> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/column_values/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Search for columns containing the query string\r\n /\r\n searchColumns(params: { query: string }): Observable<any[]> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/search/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get options for structured fields (key-value pairs)\r\n /\r\n getStructuredOptions(params: { field: string }): Observable<any[]> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/structured_options/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get all label options (TMT, SILAC, label-free)\r\n /\r\n getLabels(): Observable<any[]> {\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/labels/`);\r\n }\r\n\r\n /\r\n Get protein modification options (fixed and variable)\r\n /\r\n getModifications(): Observable<any[]> {\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/modifications/`);\r\n }\r\n\r\n /\r\n Get list of common instrument models\r\n /\r\n getInstruments(): Observable<any[]> {\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/instruments/`);\r\n }\r\n\r\n /\r\n Get cleavage agent options\r\n /\r\n getCleavageAgents(): Observable<any[]> {\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/cleavage_agents/`);\r\n }\r\n\r\n /\r\n Get all compound fields that require special handling\r\n /\r\n getCompoundFields(): Observable<any[]> {\r\n return this.get<any[]>(`${this.apiUrl}/sdrf-defaults/compound_fields/`);\r\n }\r\n\r\n /\r\n Get schema for a specific compound field\r\n /\r\n getCompoundSchema(params: { field: string }): Observable<any> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<any>(`${this.apiUrl}/sdrf-defaults/compound_schema/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Validate a compound field value against its schema\r\n /\r\n validateCompound(request: { field: string; value: any }): Observable<{ valid: boolean; errors?: string[] }> {\r\n return this.post<{ valid: boolean; errors?: string[] }>(`${this.apiUrl}/sdrf-defaults/validate_compound/`, request);\r\n }\r\n\r\n /\r\n Get column name suggestions based on partial input\r\n /\r\n getSuggestions(params: { query: string }): Observable<string[]> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<string[]>(`${this.apiUrl}/sdrf-defaults/suggestions/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get quick access to commonly used value categories\r\n /\r\n getQuickValues(): Observable<any> {\r\n return this.get<any>(`${this.apiUrl}/sdrf-defaults/quick_values/`);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n AsyncTaskStatus,\r\n AsyncTaskQueryParams,\r\n AsyncTaskCreateResponse,\r\n DownloadUrlResponse,\r\n PaginatedResponse\r\n} from '../models';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class AsyncTaskService extends BaseApiService {\r\n\r\n /\r\n Get all async tasks for the current user with optional filtering\r\n /\r\n getAsyncTasks(params?: AsyncTaskQueryParams): Observable<PaginatedResponse<AsyncTaskStatus>> {\r\n const httpParams = this.buildHttpParams(params);\r\n return this.get<PaginatedResponse<AsyncTaskStatus>>(`${this.apiUrl}/async-tasks/`, { params: httpParams });\r\n }\r\n\r\n /\r\n Get a specific async task by ID\r\n /\r\n getAsyncTask(id: string): Observable<AsyncTaskStatus> {\r\n return this.get<AsyncTaskStatus>(`${this.apiUrl}/async-tasks/${id}/`);\r\n }\r\n\r\n /\r\n Cancel a queued or running task\r\n /\r\n cancelTask(id: string): Observable<{ message: string }> {\r\n return this.delete<{ message: string }>(`${this.apiUrl}/async-tasks/${id}/cancel/`);\r\n }\r\n\r\n /\r\n Generate a signed download URL for task result file\r\n /\r\n getDownloadUrl(id: string): Observable<DownloadUrlResponse> {\r\n return this.get<DownloadUrlResponse>(`${this.apiUrl}/async-tasks/${id}/download_url/`);\r\n }\r\n\r\n /\r\n Direct download endpoint (returns blob for file download)\r\n /\r\n downloadTaskFile(id: string, token: string): Observable<Blob> {\r\n const httpParams = this.buildHttpParams({ token });\r\n return this.get(`${this.apiUrl}/async-tasks/${id}/download/`, { params: httpParams, responseType: 'blob' });\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataExportRequest,\r\n BulkExportRequest,\r\n BulkExcelExportRequest,\r\n AsyncTaskCreateResponse\r\n} from '../models';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class AsyncExportService extends BaseApiService {\r\n\r\n excelTemplate(request: MetadataExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-export/excel_template/`, request);\r\n }\r\n\r\n sdrfFile(request: MetadataExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-export/sdrf_file/`, request);\r\n }\r\n\r\n multipleSdrfFiles(request: BulkExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-export/multiple_sdrf_files/`, request);\r\n }\r\n\r\n multipleExcelTemplates(request: BulkExcelExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-export/multiple_excel_templates/`, request);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable, from } from 'rxjs';\r\nimport { switchMap } from 'rxjs/operators';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\nimport jsSHA from 'jssha';\r\n\r\nimport {\r\n ChunkedUploadStatus,\r\n ChunkedUploadRequest,\r\n ChunkedUploadResponse,\r\n ChunkedUploadCompletionRequest,\r\n ChunkedUploadCompletionResponse\r\n} from '../models';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class ChunkedUploadService extends BaseApiService {\r\n\r\n\r\n /\r\n Initialize or continue a chunked upload\r\n /\r\n uploadChunk(\r\n request: ChunkedUploadRequest,\r\n uploadId?: string,\r\n offset?: number,\r\n totalSize?: number\r\n ): Observable<ChunkedUploadResponse> {\r\n const formData = new FormData();\r\n formData.append('file', request.file);\r\n\r\n if (request.filename) {\r\n formData.append('filename', request.filename);\r\n }\r\n if (request.uploadSessionId) {\r\n formData.append('upload_session_id', request.uploadSessionId);\r\n }\r\n if (request.metadataTableId) {\r\n formData.append('metadata_table_id', request.metadataTableId.toString());\r\n }\r\n if (request.createPools !== undefined) {\r\n formData.append('create_pools', request.createPools.toString());\r\n }\r\n if (request.replaceExisting !== undefined) {\r\n formData.append('replace_existing', request.replaceExisting.toString());\r\n }\r\n\r\n const url = uploadId\r\n ? `${this.apiUrl}/chunked-upload/${uploadId}/`\r\n : `${this.apiUrl}/chunked-upload/`;\r\n\r\n const httpOptions: any = {};\r\n const isChunkedUpload = offset !== undefined && totalSize !== undefined;\r\n\r\n if (isChunkedUpload) {\r\n const chunkEnd = offset + request.file.size - 1;\r\n httpOptions.headers = {\r\n 'Content-Range': `bytes ${offset}-${chunkEnd}/${totalSize}`\r\n };\r\n }\r\n\r\n if (isChunkedUpload \|\| uploadId) {\r\n return this.put<ChunkedUploadResponse>(url, formData, httpOptions);\r\n } else {\r\n return this.post<ChunkedUploadResponse>(url, formData, httpOptions);\r\n }\r\n }\r\n\r\n /\r\n Get chunked upload status\r\n /\r\n getUploadStatus(uploadId: string): Observable<ChunkedUploadStatus> {\r\n return this.get<ChunkedUploadStatus>(`${this.apiUrl}/chunked-upload/${uploadId}/`);\r\n }\r\n\r\n /\r\n Complete the chunked upload and process the file\r\n /\r\n completeUpload(uploadId: string, request?: ChunkedUploadCompletionRequest): Observable<ChunkedUploadCompletionResponse> {\r\n const formData = new FormData();\r\n\r\n if (request?.sha256) {\r\n formData.append('sha256', request.sha256);\r\n }\r\n if (request?.metadataTableId) {\r\n formData.append('metadata_table_id', request.metadataTableId.toString());\r\n }\r\n if (request?.createPools !== undefined) {\r\n formData.append('create_pools', request.createPools.toString());\r\n }\r\n if (request?.replaceExisting !== undefined) {\r\n formData.append('replace_existing', request.replaceExisting.toString());\r\n }\r\n\r\n return this.post<ChunkedUploadCompletionResponse>(`${this.apiUrl}/chunked-upload/${uploadId}/`, formData);\r\n }\r\n\r\n /\r\n Complete the chunked upload by uploading the entire file at once\r\n /\r\n completeUploadWithFile(request: ChunkedUploadRequest): Observable<ChunkedUploadCompletionResponse> {\r\n const hasher = new jsSHA('SHA-256', 'ARRAYBUFFER');\r\n const arrayBufferPromise = request.file.arrayBuffer();\r\n\r\n return from(arrayBufferPromise).pipe(\r\n switchMap((arrayBuffer) => {\r\n hasher.update(arrayBuffer);\r\n const hash = hasher.getHash('HEX');\r\n\r\n const formData = new FormData();\r\n formData.append('file', request.file);\r\n if (request.filename) {\r\n formData.append('filename', request.filename);\r\n }\r\n if (request.uploadSessionId) {\r\n formData.append('upload_session_id', request.uploadSessionId);\r\n }\r\n if (request.metadataTableId) {\r\n formData.append('metadata_table_id', request.metadataTableId.toString());\r\n }\r\n if (request.createPools !== undefined) {\r\n formData.append('create_pools', request.createPools.toString());\r\n }\r\n if (request.replaceExisting !== undefined) {\r\n formData.append('replace_existing', request.replaceExisting.toString());\r\n }\r\n formData.append('sha256', hash);\r\n\r\n return this.post<ChunkedUploadCompletionResponse>(`${this.apiUrl}/chunked-upload/`, formData);\r\n })\r\n );\r\n\r\n }\r\n\r\n /\r\n Delete/cancel a chunked upload\r\n /\r\n cancelUpload(uploadId: string): Observable<void> {\r\n return this.delete<void>(`${this.apiUrl}/chunked-upload/${uploadId}/`);\r\n }\r\n\r\n /\r\n Helper method to upload a file in chunks with progress tracking\r\n /\r\n uploadFileInChunks(\r\n file: File,\r\n chunkSize: number = 1024 1024, // 1MB chunks by default\r\n options?: {\r\n metadataTableId?: number;\r\n createPools?: boolean;\r\n replaceExisting?: boolean;\r\n uploadSessionId?: string;\r\n onProgress?: (progress: number) => void;\r\n }\r\n ): Observable<ChunkedUploadCompletionResponse> {\r\n return new Observable(subscriber => {\r\n let uploadId: string \| undefined;\r\n let offset = 0;\r\n const totalSize = file.size;\r\n const sha256 = new jsSHA('SHA-256', 'ARRAYBUFFER');\r\n if (totalSize <= chunkSize) {\r\n this.completeUploadWithFile({\r\n file: file,\r\n filename: file.name,\r\n uploadSessionId: options?.uploadSessionId,\r\n metadataTableId: options?.metadataTableId,\r\n createPools: options?.createPools,\r\n replaceExisting: options?.replaceExisting\r\n }).subscribe({\r\n next: (result) => {\r\n subscriber.next(result);\r\n subscriber.complete();\r\n }\r\n })\r\n return;\r\n }\r\n const uploadNextChunk = () => {\r\n if (offset >= totalSize) {\r\n if (uploadId) {\r\n const calculatedHash = sha256.getHash('HEX');\r\n this.completeUpload(uploadId, {\r\n sha256: calculatedHash,\r\n metadataTableId: options?.metadataTableId,\r\n createPools: options?.createPools,\r\n replaceExisting: options?.replaceExisting\r\n }).subscribe({\r\n next: (result) => {\r\n subscriber.next(result);\r\n subscriber.complete();\r\n },\r\n error: (error) => subscriber.error(error)\r\n });\r\n } else {\r\n subscriber.error(new Error('Upload failed: No upload ID'));\r\n }\r\n return;\r\n }\r\n\r\n const end = Math.min(offset + chunkSize, totalSize);\r\n const chunk = file.slice(offset, end);\r\n const chunkFile = new File([chunk], file.name, { type: file.type });\r\n\r\n chunk.arrayBuffer().then(arrayBuffer => {\r\n sha256.update(arrayBuffer);\r\n\r\n this.uploadChunk({\r\n file: chunkFile,\r\n filename: file.name,\r\n uploadSessionId: options?.uploadSessionId,\r\n metadataTableId: options?.metadataTableId,\r\n createPools: options?.createPools,\r\n replaceExisting: options?.replaceExisting\r\n }, uploadId, offset, totalSize).subscribe({\r\n next: (response) => {\r\n uploadId = response.id;\r\n offset = response.offset;\r\n\r\n const progress = (offset / totalSize) * 100;\r\n if (options?.onProgress) {\r\n options.onProgress(progress);\r\n }\r\n\r\n uploadNextChunk();\r\n },\r\n error: (error) => subscriber.error(error)\r\n });\r\n }).catch(error => subscriber.error(error));\r\n };\r\n\r\n uploadNextChunk();\r\n });\r\n }\r\n}\r\n","import { Injectable } from '@angular/core';\r\nimport { Observable, from } from 'rxjs';\r\nimport { switchMap, map } from 'rxjs/operators';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\nimport { ChunkedUploadService } from './chunked-upload';\r\n\r\nimport {\r\n MetadataImportRequest,\r\n AsyncTaskCreateResponse\r\n} from '../models';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class AsyncImportService extends BaseApiService {\r\n\r\n constructor(private chunkedUploadService: ChunkedUploadService) {\r\n super();\r\n }\r\n\r\n sdrfFile(request: MetadataImportRequest): Observable<AsyncTaskCreateResponse> {\r\n // Always use chunked upload - it handles everything (SHA256, chunking, processing)\r\n return this.chunkedUploadService.uploadFileInChunks(\r\n request.file,\r\n 1024 * 1024, // 1MB chunks\r\n {\r\n metadataTableId: request.metadataTableId,\r\n createPools: true,\r\n replaceExisting: request.replaceExisting,\r\n onProgress: (progress) => {\r\n console.log(`SDRF upload progress: ${Math.round(progress)}%`);\r\n }\r\n }\r\n ).pipe(\r\n map(result => ({\r\n taskId: 'chunked-completed', // Processing is done immediately\r\n message: result.message \|\| 'SDRF file processed successfully',\r\n result: result\r\n } as AsyncTaskCreateResponse))\r\n );\r\n }\r\n\r\n excelFile(request: MetadataImportRequest): Observable<AsyncTaskCreateResponse> {\r\n // Always use chunked upload - it handles everything (SHA256, chunking, processing)\r\n return this.chunkedUploadService.uploadFileInChunks(\r\n request.file,\r\n 1024 * 1024, // 1MB chunks\r\n {\r\n metadataTableId: request.metadataTableId,\r\n createPools: true,\r\n replaceExisting: request.replaceExisting,\r\n onProgress: (progress) => {\r\n console.log(`Excel upload progress: ${Math.round(progress)}%`);\r\n }\r\n }\r\n ).pipe(\r\n map(result => ({\r\n taskId: 'chunked-completed', // Processing is done immediately\r\n message: result.message \|\| 'Excel file processed successfully',\r\n result: result\r\n } as AsyncTaskCreateResponse))\r\n );\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable } from 'rxjs';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\n\r\nimport {\r\n MetadataValidationRequest,\r\n AsyncTaskCreateResponse\r\n} from '../models';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class AsyncValidationService extends BaseApiService {\r\n\r\n metadataTable(request: MetadataValidationRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-validation/metadata_table/`, request);\r\n }\r\n}","import { Injectable } from '@angular/core';\r\nimport { Observable, from, throwError } from 'rxjs';\r\nimport { switchMap, map, tap } from 'rxjs/operators';\r\nimport { BaseApiService } from '@noatgnu/cupcake-core';\r\nimport { ChunkedUploadService } from './chunked-upload';\r\nimport { AsyncTaskCreateResponse, ChunkedImportRequest } from '../models';\r\n\r\nexport interface ChunkedFileImportRequest {\r\n file: File;\r\n metadataTableId: number;\r\n replaceExisting?: boolean;\r\n validateOntologies?: boolean;\r\n createPools?: boolean;\r\n}\r\n\r\nexport interface ChunkedImportProgress {\r\n uploadProgress: number;\r\n phase: 'uploading' \| 'processing' \| 'completed' \| 'failed';\r\n taskId?: string;\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class ChunkedImportService extends BaseApiService {\r\n\r\n constructor(private chunkedUploadService: ChunkedUploadService) {\r\n super();\r\n }\r\n\r\n /*\r\n Import SDRF file using chunked upload for better performance with large files\r\n /\r\n importSdrfFileChunked(request: ChunkedFileImportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.validateFileType(request.file, ['.txt', '.tsv', '.sdrf']).pipe(\r\n switchMap(() => this.uploadFileChunked(request))\r\n );\r\n }\r\n\r\n /\r\n Import Excel file using chunked upload for better performance with large files\r\n /\r\n importExcelFileChunked(request: ChunkedFileImportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.validateFileType(request.file, ['.xlsx', '.xls']).pipe(\r\n switchMap(() => this.uploadFileChunked(request))\r\n );\r\n }\r\n\r\n /\r\n Generic chunked import that auto-detects file type\r\n /\r\n importFileChunked(request: ChunkedFileImportRequest): Observable<AsyncTaskCreateResponse> {\r\n const fileExtension = this.getFileExtension(request.file.name);\r\n\r\n if (['.txt', '.tsv', '.sdrf'].includes(fileExtension)) {\r\n return this.importSdrfFileChunked(request);\r\n } else if (['.xlsx', '.xls'].includes(fileExtension)) {\r\n return this.importExcelFileChunked(request);\r\n } else {\r\n return throwError(() => new Error(`Unsupported file type: ${fileExtension}`));\r\n }\r\n }\r\n\r\n /\r\n Upload file using chunked upload with metadata processing\r\n /\r\n private uploadFileChunked(request: ChunkedFileImportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.chunkedUploadService.uploadFileInChunks(\r\n request.file,\r\n 1024 1024, // 1MB chunks\r\n {\r\n metadataTableId: request.metadataTableId,\r\n createPools: request.createPools,\r\n replaceExisting: request.replaceExisting,\r\n onProgress: (progress: number) => {\r\n // Upload progress callback - can be used for UI updates\r\n console.log(`Upload progress: ${Math.round(progress)}%`);\r\n }\r\n }\r\n ).pipe(\r\n switchMap((uploadResult) => {\r\n // Once upload is complete, trigger async processing\r\n return this.triggerAsyncImport(uploadResult, request);\r\n })\r\n );\r\n }\r\n\r\n /*\r\n Trigger async import processing after chunked upload completion\r\n * This uses the existing async-import endpoints but with chunked upload completion\r\n /\r\n private triggerAsyncImport(uploadResult: any, request: ChunkedFileImportRequest): Observable<AsyncTaskCreateResponse> {\r\n // The chunked upload has completed, now we need to trigger async processing\r\n // We'll use the file from the completed upload result\r\n\r\n const fileExtension = this.getFileExtension(request.file?.name \|\| '');\r\n\r\n if (['.txt', '.tsv', '.sdrf'].includes(fileExtension)) {\r\n // For SDRF files, we need to read the file content as text\r\n return from(request.file.text()).pipe(\r\n switchMap(fileContent => {\r\n const formData = new FormData();\r\n formData.append('metadata_table_id', request.metadataTableId.toString());\r\n formData.append('file_content', fileContent);\r\n formData.append('filename', request.file.name);\r\n\r\n if (request.replaceExisting !== undefined) {\r\n formData.append('replace_existing', request.replaceExisting.toString());\r\n }\r\n if (request.validateOntologies !== undefined) {\r\n formData.append('validate_ontologies', request.validateOntologies.toString());\r\n }\r\n\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-import/sdrf_file/`, formData);\r\n })\r\n );\r\n } else {\r\n // For Excel files, we can pass the file directly\r\n const formData = new FormData();\r\n formData.append('metadata_table_id', request.metadataTableId.toString());\r\n formData.append('file', request.file);\r\n\r\n if (request.replaceExisting !== undefined) {\r\n formData.append('replace_existing', request.replaceExisting.toString());\r\n }\r\n if (request.validateOntologies !== undefined) {\r\n formData.append('validate_ontologies', request.validateOntologies.toString());\r\n }\r\n\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-import/excel_file/`, formData);\r\n }\r\n }\r\n\r\n /\r\n Validate file type\r\n /\r\n private validateFileType(file: File, allowedExtensions: string[]): Observable<File> {\r\n const fileExtension = this.getFileExtension(file.name);\r\n\r\n if (!allowedExtensions.includes(fileExtension)) {\r\n return throwError(() => new Error(\r\n `Invalid file type. Expected: ${allowedExtensions.join(', ')}, got: ${fileExtension}`\r\n ));\r\n }\r\n\r\n return from(Promise.resolve(file));\r\n }\r\n\r\n /\r\n Get file extension from filename\r\n /\r\n private getFileExtension(filename: string): string {\r\n const lastDot = filename.lastIndexOf('.');\r\n return lastDot !== -1 ? filename.substring(lastDot).toLowerCase() : '';\r\n }\r\n\r\n /\r\n Create progress observable for UI updates\r\n /\r\n createProgressObservable(\r\n request: ChunkedFileImportRequest,\r\n onProgress?: (progress: ChunkedImportProgress) => void\r\n ): Observable<AsyncTaskCreateResponse> {\r\n return new Observable(observer => {\r\n let currentPhase: ChunkedImportProgress['phase'] = 'uploading';\r\n\r\n // Report initial state\r\n if (onProgress) {\r\n onProgress({ uploadProgress: 0, phase: currentPhase });\r\n }\r\n\r\n // Start chunked upload with progress tracking\r\n this.chunkedUploadService.uploadFileInChunks(\r\n request.file,\r\n 1024 1024, // 1MB chunks\r\n {\r\n metadataTableId: request.metadataTableId,\r\n createPools: request.createPools,\r\n replaceExisting: request.replaceExisting,\r\n onProgress: (progress: number) => {\r\n if (onProgress && currentPhase === 'uploading') {\r\n onProgress({\r\n uploadProgress: progress,\r\n phase: currentPhase\r\n });\r\n }\r\n }\r\n }\r\n ).pipe(\r\n tap(() => {\r\n // Upload completed, now processing\r\n currentPhase = 'processing';\r\n if (onProgress) {\r\n onProgress({ uploadProgress: 100, phase: currentPhase });\r\n }\r\n }),\r\n switchMap((uploadResult) => {\r\n return this.triggerAsyncImport(uploadResult, request);\r\n })\r\n ).subscribe({\r\n next: (result) => {\r\n currentPhase = 'completed';\r\n if (onProgress) {\r\n onProgress({\r\n uploadProgress: 100,\r\n phase: currentPhase,\r\n taskId: result.taskId\r\n });\r\n }\r\n observer.next(result);\r\n observer.complete();\r\n },\r\n error: (error) => {\r\n currentPhase = 'failed';\r\n if (onProgress) {\r\n onProgress({ uploadProgress: 0, phase: currentPhase });\r\n }\r\n observer.error(error);\r\n }\r\n });\r\n });\r\n }\r\n\r\n /*\r\n Queue chunked file import task using completed chunked upload\r\n * This uses the new backend endpoint that processes already uploaded chunks\r\n /\r\n processChunkedUpload(request: ChunkedImportRequest): Observable<AsyncTaskCreateResponse> {\r\n const payload = {\r\n metadataTableId: request.metadataTableId,\r\n chunkedUploadId: request.chunkedUploadId,\r\n replaceExisting: request.replaceExisting,\r\n validateOntologies: request.validateOntologies,\r\n createPools: request.createPools\r\n };\r\n\r\n return this.post<AsyncTaskCreateResponse>(`${this.apiUrl}/async-import/chunked_file/`, payload);\r\n }\r\n}\r\n","import { Injectable } from '@angular/core';\n\nexport interface AgeFormat {\n years?: number;\n months?: number;\n days?: number;\n isRange?: boolean;\n rangeStart?: AgeFormat;\n rangeEnd?: AgeFormat;\n}\n\nexport interface ModificationParameters {\n NT?: string; // Name of Term (supports typeahead)\n AC?: string; // Accession\n CF?: string; // Chemical Formula\n MT?: string; // Modification Type (Fixed/Variable/Annotated)\n PP?: string; // Position in Polypeptide\n TA?: string; // Target Amino acid\n MM?: string; // Monoisotopic Mass\n TS?: string; // Target Site regex\n}\n\nexport interface CleavageAgentDetails {\n NT?: string; // Name of Term (supports typeahead)\n AC?: string; // Accession\n CS?: string; // Cleavage Site regex\n}\n\nexport interface SpikedCompound {\n SP?: string; // spike name\n CT?: string; // compound type\n QY?: string; // quantity\n PS?: string; // purity specification\n AC?: string; // accession\n CN?: string; // compound name\n CV?: string; // controlled vocabulary\n CS?: string; // chemical structure\n CF?: string; // chemical formula\n}\n\nexport interface PooledSample {\n value: 'not pooled' \| 'pooled' \| string; // string for SN=sample1,sample2 format\n sourceNames?: string[]; // parsed source names when SN= format is used\n}\n\nexport interface SyntheticPeptide {\n value: 'synthetic' \| 'not synthetic';\n}\n\nexport interface ValidationResult {\n isValid: boolean;\n errors: string[];\n warnings?: string[];\n}\n\nexport type SyntaxType = 'age' \| 'modification' \| 'cleavage' \| 'spiked_compound' \| 'pooled_sample' \| 'synthetic_peptide';\n\n@Injectable({\n providedIn: 'root'\n})\nexport class SdrfSyntaxService {\n\n private readonly SPECIAL_COLUMN_PATTERNS = {\n age: /^characteristics\\[age\\]$/i,\n modification: /^comment\\[modification parameters\\]$/i,\n cleavage: /^comment\\[cleavage agent details\\]$/i,\n spiked_compound: /^characteristics\\[spiked compound\\]$/i,\n pooled_sample: /^characteristics\\[pooled sample\\]$/i,\n synthetic_peptide: /^characteristics\\[synthetic peptide\\]$/i\n };\n\n private readonly MODIFICATION_KEYS = ['NT', 'AC', 'CF', 'MT', 'PP', 'TA', 'MM', 'TS'];\n private readonly CLEAVAGE_KEYS = ['NT', 'AC', 'CS'];\n private readonly SPIKED_COMPOUND_KEYS = ['SP', 'CT', 'QY', 'PS', 'AC', 'CN', 'CV', 'CS', 'CF'];\n private readonly POOLED_SAMPLE_VALUES = ['not pooled', 'pooled'];\n private readonly SYNTHETIC_PEPTIDE_VALUES = ['synthetic', 'not synthetic'];\n\n /\n Detects if a column requires special SDRF syntax handling\n /\n detectSpecialSyntax(columnName: string, columnType: string): SyntaxType \| null {\n const name = columnName.toLowerCase();\n const type = columnType.toLowerCase();\n\n if (this.SPECIAL_COLUMN_PATTERNS.age.test(name) \|\| this.SPECIAL_COLUMN_PATTERNS.age.test(type)) {\n return 'age';\n }\n \n if (this.SPECIAL_COLUMN_PATTERNS.modification.test(name) \|\| this.SPECIAL_COLUMN_PATTERNS.modification.test(type)) {\n return 'modification';\n }\n \n if (this.SPECIAL_COLUMN_PATTERNS.cleavage.test(name) \|\| this.SPECIAL_COLUMN_PATTERNS.cleavage.test(type)) {\n return 'cleavage';\n }\n \n if (this.SPECIAL_COLUMN_PATTERNS.spiked_compound.test(name) \|\| this.SPECIAL_COLUMN_PATTERNS.spiked_compound.test(type)) {\n return 'spiked_compound';\n }\n\n return null;\n }\n\n /\n Parses a value based on the syntax type\n /\n parseValue(syntaxType: SyntaxType, value: string): any {\n if (!value \|\| value.trim() === '') {\n return null;\n }\n\n try {\n switch (syntaxType) {\n case 'age':\n return this.parseAgeFormat(value);\n case 'modification':\n return this.parseKeyValuePairs(value, this.MODIFICATION_KEYS);\n case 'cleavage':\n return this.parseKeyValuePairs(value, this.CLEAVAGE_KEYS);\n case 'spiked_compound':\n return this.parseKeyValuePairs(value, this.SPIKED_COMPOUND_KEYS);\n default:\n throw new Error(`Unknown syntax type: ${syntaxType}`);\n }\n } catch (error) {\n console.error(`Error parsing ${syntaxType} value:`, error);\n return null;\n }\n }\n\n /\n Formats parsed data back to string format\n /\n formatValue(syntaxType: SyntaxType, data: any): string {\n if (!data) {\n return '';\n }\n\n try {\n switch (syntaxType) {\n case 'age':\n return this.formatAgeFormat(data as AgeFormat);\n case 'modification':\n case 'cleavage':\n case 'spiked_compound':\n return this.formatKeyValuePairs(data);\n default:\n throw new Error(`Unknown syntax type: ${syntaxType}`);\n }\n } catch (error) {\n console.error(`Error formatting ${syntaxType} value:`, error);\n return '';\n }\n }\n\n /\n Validates parsed data\n /\n validateValue(syntaxType: SyntaxType, data: any): ValidationResult {\n const result: ValidationResult = {\n isValid: true,\n errors: [],\n warnings: []\n };\n\n if (!data) {\n result.isValid = false;\n result.errors.push('Value is required');\n return result;\n }\n\n try {\n switch (syntaxType) {\n case 'age':\n return this.validateAgeFormat(data as AgeFormat);\n case 'modification':\n return this.validateModificationParameters(data as ModificationParameters);\n case 'cleavage':\n return this.validateCleavageAgentDetails(data as CleavageAgentDetails);\n case 'spiked_compound':\n return this.validateSpikedCompound(data as SpikedCompound);\n default:\n result.isValid = false;\n result.errors.push(`Unknown syntax type: ${syntaxType}`);\n }\n } catch (error) {\n result.isValid = false;\n result.errors.push(`Validation error: ${error}`);\n }\n\n return result;\n }\n\n\n private parseAgeFormat(value: string): AgeFormat {\n const trimmed = value.trim();\n \n if (trimmed.includes('-')) {\n const [startStr, endStr] = trimmed.split('-').map(s => s.trim());\n return {\n isRange: true,\n rangeStart: this.parseSingleAge(startStr),\n rangeEnd: this.parseSingleAge(endStr)\n };\n }\n\n return this.parseSingleAge(trimmed);\n }\n\n private parseSingleAge(ageStr: string): AgeFormat {\n const age: AgeFormat = {};\n \n const yearMatch = ageStr.match(/(\\d+)Y/);\n const monthMatch = ageStr.match(/(\\d+)M/);\n const dayMatch = ageStr.match(/(\\d+)D/);\n\n if (yearMatch) {\n age.years = parseInt(yearMatch[1], 10);\n }\n if (monthMatch) {\n age.months = parseInt(monthMatch[1], 10);\n }\n if (dayMatch) {\n age.days = parseInt(dayMatch[1], 10);\n }\n\n return age;\n }\n\n private formatAgeFormat(age: AgeFormat): string {\n if (age.isRange && age.rangeStart && age.rangeEnd) {\n return `${this.formatSingleAge(age.rangeStart)}-${this.formatSingleAge(age.rangeEnd)}`;\n }\n\n return this.formatSingleAge(age);\n }\n\n private formatSingleAge(age: AgeFormat): string {\n let result = '';\n if (age.years) result += `${age.years}Y`;\n if (age.months) result += `${age.months}M`;\n if (age.days) result += `${age.days}D`;\n return result;\n }\n\n private parseKeyValuePairs(value: string, validKeys: string[]): any {\n const result: any = {};\n \n const pairs = value.split(';').map(pair => pair.trim()).filter(pair => pair);\n \n for (const pair of pairs) {\n const [key, ...valueParts] = pair.split('=');\n const keyTrimmed = key?.trim();\n const valueTrimmed = valueParts.join('=').trim();\n\n if (keyTrimmed && validKeys.includes(keyTrimmed)) {\n result[keyTrimmed] = valueTrimmed;\n }\n }\n\n return result;\n }\n\n private formatKeyValuePairs(data: any): string {\n const pairs: string[] = [];\n \n for (const [key, value] of Object.entries(data)) {\n if (value !== null && value !== undefined && value !== '') {\n pairs.push(`${key}=${value}`);\n }\n }\n\n return pairs.join(';');\n }\n\n private validateAgeFormat(age: AgeFormat): ValidationResult {\n const result: ValidationResult = { isValid: true, errors: [], warnings: [] };\n\n if (age.isRange) {\n if (!age.rangeStart \|\| !age.rangeEnd) {\n result.isValid = false;\n result.errors.push('Range format requires both start and end values');\n return result;\n }\n\n const startValidation = this.validateSingleAge(age.rangeStart);\n const endValidation = this.validateSingleAge(age.rangeEnd);\n\n if (!startValidation.isValid) {\n result.isValid = false;\n result.errors.push(...startValidation.errors.map(e => `Range start: ${e}`));\n }\n\n if (!endValidation.isValid) {\n result.isValid = false;\n result.errors.push(...endValidation.errors.map(e => `Range end: ${e}`));\n }\n } else {\n const singleValidation = this.validateSingleAge(age);\n if (!singleValidation.isValid) {\n result.isValid = false;\n result.errors.push(...singleValidation.errors);\n }\n }\n\n return result;\n }\n\n private validateSingleAge(age: AgeFormat): ValidationResult {\n const result: ValidationResult = { isValid: true, errors: [] };\n\n if (!age.years && !age.months && !age.days) {\n result.isValid = false;\n result.errors.push('At least one age component (years, months, or days) is required');\n }\n\n if (age.years !== undefined && (age.years < 0 \|\| age.years > 200)) {\n result.isValid = false;\n result.errors.push('Years must be between 0 and 200');\n }\n\n if (age.months !== undefined && (age.months < 0 \|\| age.months > 11)) {\n result.isValid = false;\n result.errors.push('Months must be between 0 and 11');\n }\n\n if (age.days !== undefined && (age.days < 0 \|\| age.days > 31)) {\n result.isValid = false;\n result.errors.push('Days must be between 0 and 31');\n }\n\n return result;\n }\n\n private validateModificationParameters(params: ModificationParameters): ValidationResult {\n const result: ValidationResult = { isValid: true, errors: [], warnings: [] };\n\n const hasAnyParam = Object.values(params).some(value => value !== undefined && value !== '');\n if (!hasAnyParam) {\n result.isValid = false;\n result.errors.push('At least one modification parameter is required');\n }\n\n if (params.PP && !/^\\d+$/.test(params.PP)) {\n result.errors.push('PP (protein position) must be a number');\n result.isValid = false;\n }\n\n if (params.MM && !/^\\d+(\\.\\d+)?$/.test(params.MM)) {\n result.errors.push('MM (monoisotopic mass) must be a valid number');\n result.isValid = false;\n }\n\n return result;\n }\n\n private validateCleavageAgentDetails(details: CleavageAgentDetails): ValidationResult {\n const result: ValidationResult = { isValid: true, errors: [] };\n\n const hasAnyDetail = Object.values(details).some(value => value !== undefined && value !== '');\n if (!hasAnyDetail) {\n result.isValid = false;\n result.errors.push('At least one cleavage agent detail is required');\n }\n\n return result;\n }\n\n private validateSpikedCompound(compound: SpikedCompound): ValidationResult {\n const result: ValidationResult = { isValid: true, errors: [], warnings: [] };\n\n const hasAnyParam = Object.values(compound).some(value => value !== undefined && value !== '');\n if (!hasAnyParam) {\n result.isValid = false;\n result.errors.push('At least one spiked compound parameter is required');\n }\n\n if (compound.QY && !/^\\d+(\\.\\d+)?\\s(mg\|g\|kg\|μg\|ng\|pg\|M\|mM\|μM\|nM\|pM)?$/i.test(compound.QY)) {\n result.warnings?.push('QY (quantity) format may not be standard - consider using standard units');\n }\n\n return result;\n }\n\n getPooledSampleValues(): string[] {\n return [...this.POOLED_SAMPLE_VALUES];\n }\n\n getSyntheticPeptideValues(): string[] {\n return [...this.SYNTHETIC_PEPTIDE_VALUES];\n }\n}\n","import { Injectable } from '@angular/core';\r\nimport { Observable, NEVER } from 'rxjs';\r\n\r\nexport interface ElectronAPI {\r\n platform: string;\r\n isElectron: boolean;\r\n getAppVersion(): Promise<string>;\r\n getElectronVersion(): Promise<string>;\r\n minimize(): void;\r\n maximize(): void;\r\n close(): void;\r\n isMaximized(): Promise<boolean>;\r\n showOpenDialog(options?: any): Promise<any>;\r\n showSaveDialog(options?: any): Promise<any>;\r\n showMessageBox(options: any): Promise<any>;\r\n downloadFile(url: string, filename?: string): Promise<string>;\r\n getBackendPort(): Promise<number>;\r\n isBackendReady(): Promise<boolean>;\r\n onBackendStatusChange(callback: (status: any) => void): () => void;\r\n onWindowStateChange(callback: (state: 'maximized' \| 'unmaximized') => void): () => void;\r\n}\r\n\r\ndeclare global {\r\n interface Window {\r\n electronAPI?: ElectronAPI;\r\n }\r\n}\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class ElectronService {\r\n private electronAPI: ElectronAPI \| null = null;\r\n\r\n constructor() {\r\n this.electronAPI = window.electronAPI \|\| null;\r\n }\r\n\r\n get isElectron(): boolean {\r\n return this.electronAPI?.isElectron ?? false;\r\n }\r\n\r\n get platform(): string {\r\n return this.electronAPI?.platform ?? 'web';\r\n }\r\n\r\n async getAppVersion(): Promise<string> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.getAppVersion();\r\n }\r\n\r\n async getElectronVersion(): Promise<string> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.getElectronVersion();\r\n }\r\n\r\n minimize(): void {\r\n if (!this.electronAPI) return;\r\n this.electronAPI.minimize();\r\n }\r\n\r\n maximize(): void {\r\n if (!this.electronAPI) return;\r\n this.electronAPI.maximize();\r\n }\r\n\r\n close(): void {\r\n if (!this.electronAPI) return;\r\n this.electronAPI.close();\r\n }\r\n\r\n async isMaximized(): Promise<boolean> {\r\n if (!this.electronAPI) return false;\r\n return this.electronAPI.isMaximized();\r\n }\r\n\r\n async showOpenDialog(options?: any): Promise<any> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.showOpenDialog(options);\r\n }\r\n\r\n async showSaveDialog(options?: any): Promise<any> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.showSaveDialog(options);\r\n }\r\n\r\n async showMessageBox(options: any): Promise<any> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.showMessageBox(options);\r\n }\r\n\r\n async downloadFile(url: string, filename?: string): Promise<string> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.downloadFile(url, filename);\r\n }\r\n\r\n async getBackendPort(): Promise<number> {\r\n if (!this.electronAPI) throw new Error('Not running in Electron');\r\n return this.electronAPI.getBackendPort();\r\n }\r\n\r\n async isBackendReady(): Promise<boolean> {\r\n if (!this.electronAPI) return false;\r\n return this.electronAPI.isBackendReady();\r\n }\r\n\r\n onBackendStatusChange(): Observable<any> {\r\n if (!this.electronAPI) return NEVER;\r\n\r\n return new Observable(observer => {\r\n const unsubscribe = this.electronAPI!.onBackendStatusChange((status: any) => {\r\n observer.next(status);\r\n });\r\n\r\n return () => unsubscribe();\r\n });\r\n }\r\n\r\n onWindowStateChange(): Observable<'maximized' \| 'unmaximized'> {\r\n if (!this.electronAPI) return NEVER;\r\n\r\n return new Observable(observer => {\r\n const unsubscribe = this.electronAPI!.onWindowStateChange((state: 'maximized' \| 'unmaximized') => {\r\n observer.next(state);\r\n });\r\n\r\n return () => unsubscribe();\r\n });\r\n }\r\n}","import { Component, Input, Output, EventEmitter, OnInit, inject } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { SdrfSyntaxService, AgeFormat } from '../../services/sdrf-syntax';\n\n@Component({\n selector: 'ccv-sdrf-age-input',\n imports: [CommonModule, ReactiveFormsModule],\n templateUrl: './sdrf-age-input.html',\n styleUrl: './sdrf-age-input.scss'\n})\nexport class SdrfAgeInput implements OnInit {\n @Input() value: string = '';\n @Output() valueChange = new EventEmitter<string>();\n\n private fb = inject(FormBuilder);\n private sdrfSyntax = inject(SdrfSyntaxService);\n\n ageForm!: FormGroup;\n isRange = false;\n\n ngOnInit() {\n this.ageForm = this.fb.group({\n isRange: [false],\n years: [null, [Validators.min(0), Validators.max(200)]],\n months: [null, [Validators.min(0), Validators.max(11)]],\n days: [null, [Validators.min(0), Validators.max(31)]],\n weeks: [null, [Validators.min(0), Validators.max(520)]],\n rangeStartYears: [null, [Validators.min(0), Validators.max(200)]],\n rangeStartMonths: [null, [Validators.min(0), Validators.max(11)]],\n rangeEndYears: [null, [Validators.min(0), Validators.max(200)]],\n rangeEndMonths: [null, [Validators.min(0), Validators.max(11)]]\n });\n\n // Parse initial value\n if (this.value) {\n this.parseAndSetValue(this.value);\n }\n\n // Subscribe to form changes\n this.ageForm.valueChanges.subscribe(() => {\n this.updateValue();\n });\n\n // Subscribe to range toggle\n this.ageForm.get('isRange')?.valueChanges.subscribe((isRange) => {\n this.isRange = isRange;\n this.updateValue();\n });\n }\n\n private parseAndSetValue(value: string) {\n try {\n const parsed = this.sdrfSyntax.parseValue('age', value) as AgeFormat;\n if (parsed.isRange && parsed.rangeStart && parsed.rangeEnd) {\n this.ageForm.patchValue({\n isRange: true,\n rangeStartYears: parsed.rangeStart.years,\n rangeStartMonths: parsed.rangeStart.months,\n rangeEndYears: parsed.rangeEnd.years,\n rangeEndMonths: parsed.rangeEnd.months\n });\n this.isRange = true;\n } else {\n this.ageForm.patchValue({\n isRange: false,\n years: parsed.years,\n months: parsed.months,\n days: parsed.days\n });\n }\n } catch (error) {\n console.warn('Could not parse age value:', value);\n }\n }\n\n private updateValue() {\n const formValue = this.ageForm.value;\n \n if (formValue.isRange) {\n if (formValue.rangeStartYears \|\| formValue.rangeEndYears) {\n const ageData: AgeFormat = {\n isRange: true,\n rangeStart: {\n years: formValue.rangeStartYears \|\| 0,\n months: formValue.rangeStartMonths \|\| 0\n },\n rangeEnd: {\n years: formValue.rangeEndYears \|\| 0,\n months: formValue.rangeEndMonths \|\| 0\n }\n };\n \n const formatted = this.sdrfSyntax.formatValue('age', ageData);\n this.valueChange.emit(formatted);\n }\n } else {\n if (formValue.years \|\| formValue.months \|\| formValue.days \|\| formValue.weeks) {\n const ageData: AgeFormat = {\n years: formValue.years \|\| undefined,\n months: formValue.months \|\| undefined,\n days: formValue.days \|\| undefined\n };\n \n // Handle weeks separately (convert to special format)\n if (formValue.weeks && !formValue.years && !formValue.months && !formValue.days) {\n const formatted = `${formValue.weeks}W`;\n this.valueChange.emit(formatted);\n } else {\n const formatted = this.sdrfSyntax.formatValue('age', ageData);\n this.valueChange.emit(formatted);\n }\n }\n }\n }\n}\n","<form [formGroup]=\"ageForm\" class=\"age-input-form\">\n <!-- Range Toggle -->\n <div class=\"form-check mb-3\">\n <input class=\"form-check-input\" type=\"checkbox\" id=\"isRange\" formControlName=\"isRange\">\n <label class=\"form-check-label\" for=\"isRange\">\n Age Range\n </label>\n </div>\n\n <!-- Single Age Input -->\n @if (!isRange) {\n <div class=\"row g-2 mb-2\">\n <div class=\"col-sm-3\">\n <label for=\"years\" class=\"form-label\">Years</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"years\" \n formControlName=\"years\" placeholder=\"0\" min=\"0\" max=\"200\">\n </div>\n <div class=\"col-sm-3\">\n <label for=\"months\" class=\"form-label\">Months</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"months\" \n formControlName=\"months\" placeholder=\"0\" min=\"0\" max=\"11\">\n </div>\n <div class=\"col-sm-3\">\n <label for=\"days\" class=\"form-label\">Days</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"days\" \n formControlName=\"days\" placeholder=\"0\" min=\"0\" max=\"31\">\n </div>\n <div class=\"col-sm-3\">\n <label for=\"weeks\" class=\"form-label\">Weeks <small class=\"text-muted\">(alternative)</small></label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"weeks\" \n formControlName=\"weeks\" placeholder=\"0\" min=\"0\" max=\"520\">\n </div>\n </div>\n <div class=\"form-text\">\n Use weeks for very young subjects (e.g., \"8W\" for 8 weeks). Otherwise use years/months/days.\n </div>\n }\n\n <!-- Age Range Input -->\n @if (isRange) {\n <div class=\"row g-2 mb-2\">\n <div class=\"col-sm-6\">\n <label class=\"form-label fw-semibold\">Start Age</label>\n <div class=\"row g-1\">\n <div class=\"col-6\">\n <label for=\"rangeStartYears\" class=\"form-label small\">Years</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"rangeStartYears\" \n formControlName=\"rangeStartYears\" placeholder=\"0\" min=\"0\" max=\"200\">\n </div>\n <div class=\"col-6\">\n <label for=\"rangeStartMonths\" class=\"form-label small\">Months</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"rangeStartMonths\" \n formControlName=\"rangeStartMonths\" placeholder=\"0\" min=\"0\" max=\"11\">\n </div>\n </div>\n </div>\n <div class=\"col-sm-6\">\n <label class=\"form-label fw-semibold\">End Age</label>\n <div class=\"row g-1\">\n <div class=\"col-6\">\n <label for=\"rangeEndYears\" class=\"form-label small\">Years</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"rangeEndYears\" \n formControlName=\"rangeEndYears\" placeholder=\"0\" min=\"0\" max=\"200\">\n </div>\n <div class=\"col-6\">\n <label for=\"rangeEndMonths\" class=\"form-label small\">Months</label>\n <input type=\"number\" class=\"form-control form-control-sm\" id=\"rangeEndMonths\" \n formControlName=\"rangeEndMonths\" placeholder=\"0\" min=\"0\" max=\"11\">\n </div>\n </div>\n </div>\n </div>\n <div class=\"form-text\">\n Age range format: \"25Y-30Y\" or \"2Y6M-3Y\"\n </div>\n }\n\n <!-- Validation Messages -->\n @if (ageForm.invalid && ageForm.touched) {\n <div class=\"alert alert-warning alert-sm mt-2\">\n <small>\n <i class=\"bi bi-exclamation-triangle me-1\"></i>\n Please enter valid age values (0-200 years, 0-11 months, 0-31 days)\n </small>\n </div>\n }\n</form>\n","import { Component, Input, Output, EventEmitter, OnInit, OnChanges, SimpleChanges, inject, signal } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbTypeahead, NgbModule } from '@ng-bootstrap/ng-bootstrap';\nimport { Observable, OperatorFunction, debounceTime, distinctUntilChanged, filter, map, switchMap, of, catchError } from 'rxjs';\nimport { SdrfSyntaxService, ModificationParameters } from '../../services/sdrf-syntax';\nimport {\n OntologySuggestion,\n UnimodFullData,\n UnimodSpecification,\n isUnimodFullData,\n OntologyUtils,\n OntologyType\n} from '../../models';\nimport {\n MetadataColumnService,\n MetadataColumnTemplateService\n} from '../../services';\n\n@Component({\n selector: 'ccv-sdrf-modification-input',\n imports: [CommonModule, ReactiveFormsModule, NgbTypeahead, NgbModule],\n templateUrl: './sdrf-modification-input.html',\n styleUrl: './sdrf-modification-input.scss'\n})\nexport class SdrfModificationInput implements OnInit {\n @Input() value: string = '';\n @Input() templateId: number \| null = null; // Template ID for ontology suggestions\n @Input() columnId: number \| null = null; // Column ID for ontology suggestions (actual metadata column)\n @Output() valueChange = new EventEmitter<string>();\n\n // Search type for typeahead - internal signal\n searchType = signal<'icontains' \| 'istartswith'>('icontains');\n\n private fb = inject(FormBuilder);\n private sdrfSyntax = inject(SdrfSyntaxService);\n private metadataColumnService = inject(MetadataColumnService);\n private metadataColumnTemplateService = inject(MetadataColumnTemplateService);\n\n modificationForm!: FormGroup;\n\n // Predefined options for dropdowns\n modificationTypes = ['Fixed', 'Variable', 'Annotated'];\n positions = ['Anywhere', 'Protein N-term', 'Protein C-term', 'Any N-term', 'Any C-term'];\n\n // Unimod specification support\n selectedUnimodData = signal<UnimodFullData \| null>(null);\n availableSpecifications = signal<(UnimodSpecification & { specNumber: string })[]>([]);\n selectedSpecification = signal<string \| null>(null);\n showSpecifications = signal(false);\n showHiddenSpecifications = signal(false);\n hiddenSpecificationCount = signal(0);\n\n ngOnInit() {\n this.modificationForm = this.fb.group({\n NT: ['', Validators.required], // Name of Term - with typeahead\n AC: [''], // Accession\n CF: [''], // Chemical Formula\n MT: [''], // Modification Type\n PP: [''], // Position in Polypeptide\n TA: ['', Validators.required], // Target Amino acid\n MM: ['', [Validators.pattern(/^\\d+(\\.\\d+)?$/)]], // Monoisotopic Mass\n TS: [''] // Target Site regex\n });\n\n // Parse initial value\n if (this.value) {\n this.parseAndSetValue(this.value);\n }\n\n // Subscribe to form changes\n this.modificationForm.valueChanges.subscribe(() => {\n this.updateValue();\n });\n }\n\n private parseAndSetValue(value: string) {\n try {\n const parsed = this.sdrfSyntax.parseValue('modification', value) as ModificationParameters;\n this.modificationForm.patchValue(parsed);\n } catch (error) {\n console.warn('Could not parse modification value:', value);\n }\n }\n\n // Helper method to ensure we get string values from form controls\n private getStringValue(value: any): string {\n if (typeof value === 'string') {\n return value.trim();\n }\n \n // Handle objects from typeahead selection (OntologySuggestion)\n if (value && typeof value === 'object') {\n // For Unimod modifications, use the name from full_data\n if (value.fullData && value.fullData.name) {\n return value.fullData.name;\n }\n // For other ontology types, use the value property\n if (value.value) return value.value;\n if (value.name) return value.name;\n }\n \n // Fallback to string conversion\n return value ? String(value).trim() : '';\n }\n\n private updateValue() {\n const formValue = this.modificationForm.value;\n\n // Only emit if we have required fields\n if (formValue.NT && formValue.TA) {\n // Build cleaned value, ensuring NT is always included and properly stringified\n const cleanedValue: ModificationParameters = {\n NT: this.getStringValue(formValue.NT), // Always include NT field as string\n TA: this.getStringValue(formValue.TA) // Always include TA field as string\n };\n\n // Add other non-empty fields\n Object.keys(formValue).forEach(key => {\n if (key !== 'NT' && key !== 'TA') { // Skip NT and TA as they're already added\n const value = formValue[key];\n const stringValue = this.getStringValue(value);\n if (stringValue) {\n cleanedValue[key as keyof ModificationParameters] = stringValue;\n }\n }\n });\n\n const formatted = this.sdrfSyntax.formatValue('modification', cleanedValue);\n this.valueChange.emit(formatted);\n } else if (!formValue.NT && !formValue.TA) {\n // If both required fields are empty, emit empty string\n this.valueChange.emit('');\n }\n }\n\n // Typeahead for NT field (Name of Term) - using ontology suggestions from API\n searchModificationTerms: OperatorFunction<string, readonly OntologySuggestion[]> = (text$: Observable<string>) =>\n text$.pipe(\n debounceTime(200),\n distinctUntilChanged(),\n filter(term => term.length >= 2),\n switchMap(term => {\n // Use column ID first if available (for actual metadata columns), otherwise template ID (for templates/favorites)\n if (this.columnId) {\n return this.metadataColumnService.getOntologySuggestions({\n columnId: this.columnId,\n search: term,\n limit: 10,\n searchType: this.searchType()\n }).pipe(\n map(response => response.suggestions \|\| []),\n catchError(error => {\n console.warn(`Failed to get ontology suggestions for column ${this.columnId}:`, error);\n return of([]);\n })\n );\n } else if (this.templateId) {\n return this.metadataColumnTemplateService.getOntologySuggestions({\n templateId: this.templateId,\n search: term,\n limit: 10,\n searchType: this.searchType()\n }).pipe(\n map(response => response.suggestions \|\| []),\n catchError(error => {\n console.warn(`Failed to get ontology suggestions for template ${this.templateId}:`, error);\n return of([]);\n })\n );\n } else {\n // No ID available, return empty suggestions\n return of([]);\n }\n })\n );\n\n // Formatter for ontology suggestions\n formatOntologySuggestion = (suggestion: OntologySuggestion): string => {\n return suggestion.displayName \|\| suggestion.value;\n };\n\n // Handle ontology suggestion selection\n onOntologySuggestionSelected = (event: any): void => {\n const suggestion: OntologySuggestion = event.item;\n if (suggestion) {\n // Set the NT field value - use display name for Unimod, otherwise use value\n const ntValue = isUnimodFullData(suggestion) && suggestion.fullData.name\n ? suggestion.fullData.name\n : (suggestion.displayName \|\| suggestion.value);\n this.modificationForm.patchValue({ NT: ntValue });\n\n // Check if this is a Unimod modification with specifications\n if (isUnimodFullData(suggestion)) {\n this.selectedUnimodData.set(suggestion.fullData);\n this.updateAvailableSpecifications(suggestion);\n this.showSpecifications.set(this.availableSpecifications().length > 0);\n\n // Auto-fill some fields from main Unimod data\n if (suggestion.fullData.accession) {\n this.modificationForm.patchValue({ AC: suggestion.fullData.accession });\n }\n if (suggestion.fullData.deltaComposition) {\n this.modificationForm.patchValue({ CF: suggestion.fullData.deltaComposition });\n }\n if (suggestion.fullData.deltaMonoMass) {\n this.modificationForm.patchValue({ MM: suggestion.fullData.deltaMonoMass });\n }\n } else {\n // Not a Unimod modification, clear specification data\n this.selectedUnimodData.set(null);\n this.availableSpecifications.set([]);\n this.showSpecifications.set(false);\n this.selectedSpecification.set(null);\n }\n }\n };\n\n // Format TA field display (amino acids)\n formatTargetAminoAcids(value: string): string {\n if (!value) return '';\n // Split by comma and clean up\n return value.split(',').map(aa => aa.trim().toUpperCase()).join(', ');\n }\n\n onTargetAminoAcidChange(event: any) {\n const value = event.target.value;\n if (value) {\n // Format as uppercase and validate amino acid letters\n const formatted = value\n .replace(/[^A-Za-z,]/g, '') // Only allow letters and commas\n .split(',')\n .map((aa: string) => aa.trim().toUpperCase())\n .filter((aa: string) => aa.length > 0)\n .join(',');\n\n this.modificationForm.patchValue({ TA: formatted });\n }\n }\n\n // Handle specification selection\n onSpecificationSelected(specNumber: string): void {\n this.selectedSpecification.set(specNumber);\n const unimodData = this.selectedUnimodData();\n\n if (unimodData && unimodData.specifications[specNumber]) {\n const spec = unimodData.specifications[specNumber];\n\n // Ensure NT field is preserved (use the Unimod name)\n const currentNT = this.modificationForm.get('NT')?.value;\n if (!currentNT && unimodData.name) {\n this.modificationForm.patchValue({ NT: unimodData.name });\n }\n\n // Update form fields with specification data\n if (spec['site']) {\n this.modificationForm.patchValue({ TA: spec['site'] });\n }\n if (spec['position']) {\n // Map Unimod position to our dropdown values\n const mappedPosition = this.mapUnimodPosition(spec['position']);\n this.modificationForm.patchValue({ PP: mappedPosition });\n }\n if (spec['classification']) {\n // Map classification to modification type if possible\n const mappedType = this.mapClassificationToType(spec['classification']);\n if (mappedType) {\n this.modificationForm.patchValue({ MT: mappedType });\n }\n }\n }\n }\n\n // Map Unimod position to our dropdown values\n private mapUnimodPosition(unimodPosition: string): string {\n const positionMap: Record<string, string> = {\n 'Anywhere': 'Anywhere',\n 'Protein N-term': 'Protein N-term',\n 'Protein C-term': 'Protein C-term',\n 'Any N-term': 'Any N-term',\n 'Any C-term': 'Any C-term'\n };\n\n return positionMap[unimodPosition] \|\| 'Anywhere';\n }\n\n // Map classification to modification type\n private mapClassificationToType(classification: string): string \| null {\n const classificationMap: Record<string, string> = {\n 'Post-translational': 'Variable',\n 'Chemical derivatization': 'Fixed',\n 'Artefact': 'Variable',\n 'Pre-translational': 'Fixed',\n 'Multiple': 'Variable',\n 'Other': 'Variable'\n };\n\n return classificationMap[classification] \|\| null;\n }\n\n // Get specification display text\n getSpecificationDisplay(spec: UnimodSpecification & { specNumber: string }): string {\n const parts = [];\n if (spec['site']) parts.push(`Site: ${spec['site']}`);\n if (spec['position']) parts.push(`Position: ${spec['position']}`);\n if (spec['classification']) parts.push(`Class: ${spec['classification']}`);\n\n return parts.join(' \| ') \|\| `Specification ${spec.specNumber}`;\n }\n\n // Handle search type change\n onSearchTypeChange(type: 'icontains' \| 'istartswith'): void {\n this.searchType.set(type);\n }\n\n // Update available specifications based on toggle state\n private updateAvailableSpecifications(suggestion: OntologySuggestion): void {\n if (!isUnimodFullData(suggestion)) return;\n\n const allSpecs = OntologyUtils.getUnimodSpecifications(suggestion);\n const activeSpecs = OntologyUtils.getActiveUnimodSpecifications(suggestion);\n \n // Calculate hidden count\n this.hiddenSpecificationCount.set(allSpecs.length - activeSpecs.length);\n \n // Set available specifications based on toggle\n const specsToShow = this.showHiddenSpecifications() ? allSpecs : activeSpecs;\n this.availableSpecifications.set(specsToShow);\n }\n\n // Toggle hidden specifications visibility\n toggleHiddenSpecifications(): void {\n this.showHiddenSpecifications.set(!this.showHiddenSpecifications());\n \n // Update available specifications\n const unimodData = this.selectedUnimodData();\n if (unimodData) {\n // Create a mock suggestion object to pass to updateAvailableSpecifications\n const mockSuggestion: OntologySuggestion = {\n id: '',\n value: '',\n displayName: '',\n ontologyType: OntologyType.UNIMOD,\n fullData: unimodData\n };\n this.updateAvailableSpecifications(mockSuggestion);\n }\n }\n}\n","<form [formGroup]=\"modificationForm\" class=\"modification-input-form\">\n\n <!-- Search Type Selection for Typeahead -->\n @if (templateId \|\| columnId) {\n <div class=\"mb-3\">\n <small class=\"text-muted d-block mb-1\">Search Mode for Name of Term:</small>\n <div class=\"btn-group btn-group-sm\" role=\"group\">\n <button\n type=\"button\"\n class=\"btn\"\n [class]=\"searchType() === 'icontains' ? 'btn-primary' : 'btn-outline-primary'\"\n (click)=\"onSearchTypeChange('icontains')\">\n <i class=\"bi bi-search me-1\"></i>Contains\n </button>\n <button\n type=\"button\"\n class=\"btn\"\n [class]=\"searchType() === 'istartswith' ? 'btn-primary' : 'btn-outline-primary'\"\n (click)=\"onSearchTypeChange('istartswith')\">\n <i class=\"bi bi-arrow-right me-1\"></i>Starts with\n </button>\n </div>\n </div>\n }\n\n <div class=\"row g-3\">\n\n <!-- Name of Term (NT) - Required with Typeahead -->\n <div class=\"col-md-6\">\n <label for=\"NT\" class=\"form-label\">\n Name of Term <span class=\"text-danger\"></span>\n <small class=\"text-muted\">(NT)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"NT\"\n formControlName=\"NT\"\n placeholder=\"e.g., Oxidation, Acetyl, Phospho\"\n [ngbTypeahead]=\"searchModificationTerms\"\n [resultFormatter]=\"formatOntologySuggestion\"\n [inputFormatter]=\"formatOntologySuggestion\"\n (selectItem)=\"onOntologySuggestionSelected($event)\"\n [editable]=\"true\"\n [showHint]=\"true\"\n [focusFirst]=\"false\"\n container=\"body\"\n [class.is-invalid]=\"modificationForm.get('NT')?.invalid && modificationForm.get('NT')?.touched\">\n <div class=\"form-text\">\n @if (templateId \|\| columnId) {\n Typeahead search: {{ searchType() === 'icontains' ? 'Contains' : 'Starts with' }} mode\n } @else {\n Common modifications: Oxidation, Carbamidomethyl, Acetyl\n }\n </div>\n <div class=\"invalid-feedback\">\n Name of Term is required\n </div>\n </div>\n\n <!-- Unimod Specification Selection -->\n @if (showSpecifications() && availableSpecifications().length > 0) {\n <div class=\"col-md-12\">\n <div class=\"mb-3\">\n <div class=\"d-flex justify-content-between align-items-center mb-2\">\n <label class=\"form-label mb-0\">\n Unimod Specifications\n <small class=\"text-muted\">(Select to auto-fill fields)</small>\n </label>\n \n @if (hiddenSpecificationCount() > 0) {\n <div class=\"form-check form-switch\">\n <input \n class=\"form-check-input\" \n type=\"checkbox\" \n id=\"showHiddenSpecs\"\n [checked]=\"showHiddenSpecifications()\"\n (change)=\"toggleHiddenSpecifications()\">\n <label class=\"form-check-label small text-muted\" for=\"showHiddenSpecs\">\n Show {{ hiddenSpecificationCount() }} hidden spec{{ hiddenSpecificationCount() === 1 ? '' : 's' }}\n </label>\n </div>\n }\n </div>\n \n <div class=\"border rounded p-2 bg-body-secondary\">\n <div class=\"mb-2\">\n <small class=\"text-info fw-semibold\">\n <i class=\"bi bi-info-circle me-1\"></i>\n {{ showHiddenSpecifications() ? 'All' : 'Visible' }} specifications for {{ selectedUnimodData()?.name }}\n @if (!showHiddenSpecifications() && hiddenSpecificationCount() > 0) {\n <span class=\"text-muted\">({{ hiddenSpecificationCount() }} hidden)</span>\n }\n </small>\n </div>\n <div class=\"row g-2\">\n @for (spec of availableSpecifications(); track spec.specNumber) {\n <div class=\"col-md-6\">\n <div class=\"form-check\">\n <input\n class=\"form-check-input\"\n type=\"radio\"\n [id]=\"'spec_' + spec.specNumber\"\n [value]=\"spec.specNumber\"\n [checked]=\"selectedSpecification() === spec.specNumber\"\n (change)=\"onSpecificationSelected(spec.specNumber)\">\n <label\n class=\"form-check-label small\"\n [for]=\"'spec_' + spec.specNumber\">\n <div class=\"fw-semibold\">\n Spec {{ spec.specNumber }}\n @if (spec['hidden'] === '1') {\n <span class=\"badge bg-warning text-dark ms-1\" title=\"Hidden specification\">Hidden</span>\n }\n </div>\n <div class=\"text-muted\">{{ getSpecificationDisplay(spec) }}</div>\n </label>\n </div>\n </div>\n }\n </div>\n @if (selectedSpecification()) {\n <div class=\"mt-2 p-2 bg-body border rounded\">\n <small class=\"text-success\">\n <i class=\"bi bi-check-circle me-1\"></i>\n Fields auto-filled from specification {{ selectedSpecification() }}\n </small>\n </div>\n }\n </div>\n </div>\n </div>\n }\n\n <!-- Target Amino Acid (TA) - Required -->\n <div class=\"col-md-6\">\n <label for=\"TA\" class=\"form-label\">\n Target Amino Acid <span class=\"text-danger\"></span>\n <small class=\"text-muted\">(TA)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"TA\"\n formControlName=\"TA\"\n placeholder=\"e.g., M, S,T,Y, C\"\n (input)=\"onTargetAminoAcidChange($event)\"\n [class.is-invalid]=\"modificationForm.get('TA')?.invalid && modificationForm.get('TA')?.touched\">\n <div class=\"form-text\">Single letter amino acid codes, comma-separated</div>\n <div class=\"invalid-feedback\">\n Target amino acid is required\n </div>\n </div>\n\n <!-- Accession (AC) -->\n <div class=\"col-md-6\">\n <label for=\"AC\" class=\"form-label\">\n Accession <small class=\"text-muted\">(AC)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"AC\"\n formControlName=\"AC\"\n placeholder=\"e.g., UNIMOD:35, PSI-MOD:00719\">\n <div class=\"form-text\">UNIMOD or PSI-MOD accession</div>\n </div>\n\n <!-- Modification Type (MT) -->\n <div class=\"col-md-6\">\n <label for=\"MT\" class=\"form-label\">\n Modification Type <small class=\"text-muted\">(MT)</small>\n </label>\n <select class=\"form-select\" id=\"MT\" formControlName=\"MT\">\n <option value=\"\">Select type...</option>\n @for (type of modificationTypes; track type) {\n <option [value]=\"type\">{{ type }}</option>\n }\n </select>\n <div class=\"form-text\">Fixed, Variable, or Annotated</div>\n </div>\n\n <!-- Position (PP) -->\n <div class=\"col-md-6\">\n <label for=\"PP\" class=\"form-label\">\n Position <small class=\"text-muted\">(PP)</small>\n </label>\n <select class=\"form-select\" id=\"PP\" formControlName=\"PP\">\n <option value=\"\">Select position...</option>\n @for (position of positions; track position) {\n <option [value]=\"position\">{{ position }}</option>\n }\n </select>\n <div class=\"form-text\">Where the modification occurs</div>\n </div>\n\n <!-- Chemical Formula (CF) -->\n <div class=\"col-md-6\">\n <label for=\"CF\" class=\"form-label\">\n Chemical Formula <small class=\"text-muted\">(CF)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"CF\"\n formControlName=\"CF\"\n placeholder=\"e.g., H(2)C(2)O\">\n <div class=\"form-text\">Follow UNIMOD format: H(2)C(2)O</div>\n </div>\n\n <!-- Monoisotopic Mass (MM) -->\n <div class=\"col-md-6\">\n <label for=\"MM\" class=\"form-label\">\n Monoisotopic Mass <small class=\"text-muted\">(MM)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"MM\"\n formControlName=\"MM\"\n placeholder=\"e.g., 42.010565\"\n [class.is-invalid]=\"modificationForm.get('MM')?.invalid && modificationForm.get('MM')?.touched\">\n <div class=\"form-text\">Mass shift in Da (5+ decimal places)</div>\n <div class=\"invalid-feedback\">\n Please enter a valid mass (numbers and decimal point only)\n </div>\n </div>\n\n <!-- Target Site (TS) -->\n <div class=\"col-md-6\">\n <label for=\"TS\" class=\"form-label\">\n Target Site <small class=\"text-muted\">(TS)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"TS\"\n formControlName=\"TS\"\n placeholder=\"e.g., N[^P][ST]\">\n <div class=\"form-text\">Regular expression for complex site rules</div>\n </div>\n\n </div>\n\n <!-- Preview -->\n @if (modificationForm.valid && (modificationForm.get('NT')?.value \|\| modificationForm.get('TA')?.value)) {\n <div class=\"mt-3 p-2 bg-body-secondary border rounded\">\n <small class=\"text-muted fw-semibold\">Preview:</small>\n <div class=\"font-monospace small\">{{ value \|\| 'Building...' }}</div>\n </div>\n }\n\n <!-- Validation Summary -->\n @if (modificationForm.invalid && modificationForm.touched) {\n <div class=\"alert alert-warning mt-3\">\n <small>\n <i class=\"bi bi-exclamation-triangle me-1\"></i>\n <strong>Required fields:</strong> Name of Term (NT) and Target Amino Acid (TA) must be filled.\n </small>\n </div>\n }\n</form>\n","import { Component, Input, Output, EventEmitter, OnInit, inject } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { SdrfSyntaxService, SpikedCompound } from '../../services/sdrf-syntax';\n\n@Component({\n selector: 'ccv-sdrf-spiked-compound-input',\n imports: [CommonModule, ReactiveFormsModule],\n templateUrl: './sdrf-spiked-compound-input.html',\n styleUrl: './sdrf-spiked-compound-input.scss'\n})\nexport class SdrfSpikedCompoundInput implements OnInit {\n @Input() value: string = '';\n @Output() valueChange = new EventEmitter<string>();\n\n private fb = inject(FormBuilder);\n private sdrfSyntax = inject(SdrfSyntaxService);\n\n spikedForm!: FormGroup;\n \n // Predefined options\n compoundTypes = ['protein', 'peptide', 'mixture', 'other'];\n\n ngOnInit() {\n this.spikedForm = this.fb.group({\n CT: ['', Validators.required], // Compound type - MANDATORY\n QY: ['', Validators.required], // Quantity - MANDATORY\n SP: [''], // Species - Optional\n PS: [''], // Peptide sequence - For peptides\n AC: [''], // Uniprot Accession - For proteins\n CN: [''], // Compound name - Optional\n CV: [''], // Compound vendor - Optional\n CS: [''], // Compound specification URI - Optional\n CF: [''] // Compound formula - Optional\n });\n\n // Parse initial value\n if (this.value) {\n this.parseAndSetValue(this.value);\n }\n\n // Subscribe to form changes\n this.spikedForm.valueChanges.subscribe(() => {\n this.updateValue();\n });\n }\n\n private parseAndSetValue(value: string) {\n try {\n const parsed = this.sdrfSyntax.parseValue('spiked_compound', value) as SpikedCompound;\n this.spikedForm.patchValue(parsed);\n } catch (error) {\n console.warn('Could not parse spiked compound value:', value);\n }\n }\n\n // Helper method to ensure we get string values from form controls\n private getStringValue(value: any): string {\n if (typeof value === 'string') {\n return value.trim();\n }\n \n // Handle objects from typeahead selection (OntologySuggestion)\n if (value && typeof value === 'object') {\n // For ontology suggestions, use the value property\n if (value.value) return value.value;\n if (value.name) return value.name;\n }\n \n // Fallback to string conversion\n return value ? String(value).trim() : '';\n }\n\n private updateValue() {\n const formValue = this.spikedForm.value;\n \n // Only emit if we have both required fields\n if (formValue.CT && formValue.QY) {\n // Filter out empty values and convert to strings\n const cleanedValue: SpikedCompound = {};\n Object.keys(formValue).forEach(key => {\n const stringValue = this.getStringValue(formValue[key]);\n if (stringValue) {\n cleanedValue[key as keyof SpikedCompound] = stringValue;\n }\n });\n\n const formatted = this.sdrfSyntax.formatValue('spiked_compound', cleanedValue);\n this.valueChange.emit(formatted);\n } else if (!formValue.CT && !formValue.QY) {\n // If both required fields are empty, emit empty string\n this.valueChange.emit('');\n }\n }\n\n get showProteinFields(): boolean {\n return this.spikedForm.get('CT')?.value === 'protein';\n }\n\n get showPeptideFields(): boolean {\n return this.spikedForm.get('CT')?.value === 'peptide';\n }\n}\n","<form [formGroup]=\"spikedForm\" class=\"spiked-compound-input-form\">\n <div class=\"row g-3\">\n \n <!-- Compound Type (CT) - Required -->\n <div class=\"col-md-6\">\n <label for=\"CT\" class=\"form-label\">\n Compound Type <span class=\"text-danger\"></span>\n <small class=\"text-muted\">(CT)</small>\n </label>\n <select class=\"form-select\" id=\"CT\" formControlName=\"CT\"\n [class.is-invalid]=\"spikedForm.get('CT')?.invalid && spikedForm.get('CT')?.touched\">\n <option value=\"\">Select compound type...</option>\n @for (type of compoundTypes; track type) {\n <option [value]=\"type\">{{ type }}</option>\n }\n </select>\n <div class=\"form-text\">Type of spiked compound</div>\n <div class=\"invalid-feedback\">\n Compound type is required\n </div>\n </div>\n\n <!-- Quantity (QY) - Required -->\n <div class=\"col-md-6\">\n <label for=\"QY\" class=\"form-label\">\n Quantity <span class=\"text-danger\"></span>\n <small class=\"text-muted\">(QY)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"QY\"\n formControlName=\"QY\"\n placeholder=\"e.g., 10 fmol, 50 ng\"\n [class.is-invalid]=\"spikedForm.get('QY')?.invalid && spikedForm.get('QY')?.touched\">\n <div class=\"form-text\">Quantity with units (molar or mass)</div>\n <div class=\"invalid-feedback\">\n Quantity is required\n </div>\n </div>\n\n <!-- Species (SP) -->\n <div class=\"col-md-6\">\n <label for=\"SP\" class=\"form-label\">\n Species <small class=\"text-muted\">(SP)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"SP\"\n formControlName=\"SP\"\n placeholder=\"e.g., homo sapiens\">\n <div class=\"form-text\">Species of origin</div>\n </div>\n\n <!-- Compound Name (CN) -->\n <div class=\"col-md-6\">\n <label for=\"CN\" class=\"form-label\">\n Compound Name <small class=\"text-muted\">(CN)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"CN\"\n formControlName=\"CN\"\n placeholder=\"e.g., Myoglobin\">\n <div class=\"form-text\">Name of the compound</div>\n </div>\n\n <!-- Protein-specific fields -->\n @if (showProteinFields) {\n <div class=\"col-md-12\">\n <label for=\"AC\" class=\"form-label\">\n Uniprot Accession <small class=\"text-muted\">(AC)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"AC\"\n formControlName=\"AC\"\n placeholder=\"e.g., P68871\">\n <div class=\"form-text\">Uniprot accession for protein compounds</div>\n </div>\n }\n\n <!-- Peptide-specific fields -->\n @if (showPeptideFields) {\n <div class=\"col-md-12\">\n <label for=\"PS\" class=\"form-label\">\n Peptide Sequence <small class=\"text-muted\">(PS)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"PS\"\n formControlName=\"PS\"\n placeholder=\"e.g., PEPTIDESEQ\">\n <div class=\"form-text\">Peptide sequence for peptide compounds</div>\n </div>\n }\n\n <!-- Compound Vendor (CV) -->\n <div class=\"col-md-6\">\n <label for=\"CV\" class=\"form-label\">\n Compound Vendor <small class=\"text-muted\">(CV)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"CV\"\n formControlName=\"CV\"\n placeholder=\"e.g., Sigma-Aldrich\">\n <div class=\"form-text\">Vendor or supplier name</div>\n </div>\n\n <!-- Compound Formula (CF) -->\n <div class=\"col-md-6\">\n <label for=\"CF\" class=\"form-label\">\n Compound Formula <small class=\"text-muted\">(CF)</small>\n </label>\n <input \n type=\"text\" \n class=\"form-control\" \n id=\"CF\"\n formControlName=\"CF\"\n placeholder=\"e.g., C8H14N4O2\">\n <div class=\"form-text\">Chemical formula</div>\n </div>\n\n <!-- Compound Specification URI (CS) -->\n <div class=\"col-md-12\">\n <label for=\"CS\" class=\"form-label\">\n Compound Specification URI <small class=\"text-muted\">(CS)</small>\n </label>\n <input \n type=\"url\" \n class=\"form-control\" \n id=\"CS\"\n formControlName=\"CS\"\n placeholder=\"https://example.com/compound-spec\">\n <div class=\"form-text\">URI to compound specification or documentation</div>\n </div>\n\n </div>\n\n <!-- Preview -->\n @if (spikedForm.valid && (spikedForm.get('CT')?.value && spikedForm.get('QY')?.value)) {\n <div class=\"mt-3 p-2 bg-body-secondary border rounded\">\n <small class=\"text-muted fw-semibold\">Preview:</small>\n <div class=\"font-monospace small\">{{ value \|\| 'Building...' }}</div>\n </div>\n }\n\n <!-- Validation Summary -->\n @if (spikedForm.invalid && spikedForm.touched) {\n <div class=\"alert alert-warning mt-3\">\n <small>\n <i class=\"bi bi-exclamation-triangle me-1\"></i>\n <strong>Required fields:</strong> Compound Type (CT) and Quantity (QY) must be filled.\n </small>\n </div>\n }\n</form>\n","import { Component, Input, Output, EventEmitter, OnInit, inject, signal } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbTypeahead, NgbModule } from '@ng-bootstrap/ng-bootstrap';\nimport { Observable, OperatorFunction, debounceTime, distinctUntilChanged, filter, map, switchMap, of, catchError } from 'rxjs';\nimport { SdrfSyntaxService, CleavageAgentDetails } from '../../services/sdrf-syntax';\nimport { OntologySuggestion } from '../../models';\nimport { MetadataColumnService, MetadataColumnTemplateService } from '../../services';\n\n@Component({\n selector: 'ccv-sdrf-cleavage-input',\n imports: [CommonModule, ReactiveFormsModule, NgbTypeahead, NgbModule],\n templateUrl: './sdrf-cleavage-input.html',\n styleUrl: './sdrf-cleavage-input.scss'\n})\nexport class SdrfCleavageInput implements OnInit {\n @Input() value: string = '';\n @Input() templateId: number \| null = null; // Template ID for ontology suggestions\n @Input() columnId: number \| null = null; // Column ID for ontology suggestions (actual metadata column)\n @Output() valueChange = new EventEmitter<string>();\n\n // Search type for typeahead - internal signal\n searchType = signal<'icontains' \| 'istartswith'>('icontains');\n\n private fb = inject(FormBuilder);\n private sdrfSyntax = inject(SdrfSyntaxService);\n private metadataColumnService = inject(MetadataColumnService);\n private metadataColumnTemplateService = inject(MetadataColumnTemplateService);\n\n cleavageForm!: FormGroup;\n\n ngOnInit() {\n this.cleavageForm = this.fb.group({\n NT: ['', Validators.required], // Name of Term - will use ontology typeahead from parent\n AC: [''], // Accession\n CS: [''] // Cleavage Site pattern\n });\n\n // Parse initial value\n if (this.value) {\n this.parseAndSetValue(this.value);\n }\n\n // Subscribe to form changes\n this.cleavageForm.valueChanges.subscribe(() => {\n this.updateValue();\n });\n }\n\n private parseAndSetValue(value: string) {\n try {\n const parsed = this.sdrfSyntax.parseValue('cleavage', value) as CleavageAgentDetails;\n this.cleavageForm.patchValue(parsed);\n } catch (error) {\n console.warn('Could not parse cleavage agent value:', value);\n }\n }\n\n // Helper method to ensure we get string values from form controls\n private getStringValue(value: any): string {\n if (typeof value === 'string') {\n return value.trim();\n }\n \n // Handle objects from typeahead selection (OntologySuggestion)\n if (value && typeof value === 'object') {\n // For cleavage agents: display_name for NT, value for AC\n if (value.displayName) return value.displayName;\n if (value.value) return value.value;\n if (value.name) return value.name;\n }\n \n // Fallback to string conversion\n return value ? String(value).trim() : '';\n }\n\n private updateValue() {\n const formValue = this.cleavageForm.value;\n\n // Only emit if we have required field\n if (formValue.NT) {\n // Filter out empty values and convert to strings\n const cleanedValue: CleavageAgentDetails = {};\n Object.keys(formValue).forEach(key => {\n const stringValue = this.getStringValue(formValue[key]);\n if (stringValue) {\n cleanedValue[key as keyof CleavageAgentDetails] = stringValue;\n }\n });\n\n const formatted = this.sdrfSyntax.formatValue('cleavage', cleanedValue);\n this.valueChange.emit(formatted);\n } else if (!formValue.NT) {\n // If required field is empty, emit empty string\n this.valueChange.emit('');\n }\n }\n\n // Typeahead for NT field (Name of Term) - using ontology suggestions from API\n searchCleavageTerms: OperatorFunction<string, readonly OntologySuggestion[]> = (text$: Observable<string>) =>\n text$.pipe(\n debounceTime(200),\n distinctUntilChanged(),\n filter(term => term.length >= 2),\n switchMap(term => {\n // Use column ID first if available (for actual metadata columns), otherwise template ID (for templates/favorites)\n if (this.columnId) {\n return this.metadataColumnService.getOntologySuggestions({\n columnId: this.columnId,\n search: term,\n limit: 10,\n searchType: this.searchType()\n }).pipe(\n map(response => response.suggestions \|\| []),\n catchError(error => {\n console.warn(`Failed to get ontology suggestions for column ${this.columnId}:`, error);\n return of([]);\n })\n );\n } else if (this.templateId) {\n return this.metadataColumnTemplateService.getOntologySuggestions({\n templateId: this.templateId,\n search: term,\n limit: 10,\n searchType: this.searchType()\n }).pipe(\n map(response => response.suggestions \|\| []),\n catchError(error => {\n console.warn(`Failed to get ontology suggestions for template ${this.templateId}:`, error);\n return of([]);\n })\n );\n } else {\n // No ID available, return empty suggestions\n return of([]);\n }\n })\n );\n\n // Formatter for ontology suggestions\n formatOntologySuggestion = (suggestion: OntologySuggestion): string => {\n return suggestion.displayName \|\| suggestion.value;\n };\n\n // Handle ontology suggestion selection\n onOntologySuggestionSelected = (event: any): void => {\n const suggestion: OntologySuggestion = event.item;\n if (suggestion) {\n // Set the NT field value\n this.cleavageForm.patchValue({ NT: suggestion.value });\n\n // Auto-fill AC field if available (use the ID as accession)\n if (suggestion.id) {\n this.cleavageForm.patchValue({ AC: suggestion.id });\n }\n }\n };\n\n // Handle search type change\n onSearchTypeChange(type: 'icontains' \| 'istartswith'): void {\n this.searchType.set(type);\n }\n}\n","<form [formGroup]=\"cleavageForm\" class=\"cleavage-input-form\">\n\n <!-- Search Type Selection for Typeahead -->\n @if (templateId \|\| columnId) {\n <div class=\"mb-3\">\n <small class=\"text-muted d-block mb-1\">Search Mode for Name of Term:</small>\n <div class=\"btn-group btn-group-sm\" role=\"group\">\n <button\n type=\"button\"\n class=\"btn\"\n [class]=\"searchType() === 'icontains' ? 'btn-primary' : 'btn-outline-primary'\"\n (click)=\"onSearchTypeChange('icontains')\">\n <i class=\"bi bi-search me-1\"></i>Contains\n </button>\n <button\n type=\"button\"\n class=\"btn\"\n [class]=\"searchType() === 'istartswith' ? 'btn-primary' : 'btn-outline-primary'\"\n (click)=\"onSearchTypeChange('istartswith')\">\n <i class=\"bi bi-arrow-right me-1\"></i>Starts with\n </button>\n </div>\n </div>\n }\n\n <div class=\"row g-3\">\n\n <!-- Name of Term (NT) - Required -->\n <div class=\"col-md-6\">\n <label for=\"NT\" class=\"form-label\">\n Name of Term <span class=\"text-danger\"></span>\n <small class=\"text-muted\">(NT)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"NT\"\n formControlName=\"NT\"\n placeholder=\"e.g., Trypsin, Chymotrypsin\"\n [ngbTypeahead]=\"searchCleavageTerms\"\n [resultFormatter]=\"formatOntologySuggestion\"\n [inputFormatter]=\"formatOntologySuggestion\"\n (selectItem)=\"onOntologySuggestionSelected($event)\"\n [editable]=\"true\"\n [showHint]=\"true\"\n [focusFirst]=\"false\"\n container=\"body\"\n [class.is-invalid]=\"cleavageForm.get('NT')?.invalid && cleavageForm.get('NT')?.touched\">\n <div class=\"form-text\">\n @if (templateId \|\| columnId) {\n Typeahead search: {{ searchType() === 'icontains' ? 'Contains' : 'Starts with' }} mode\n } @else {\n Cleavage agent name (uses ontology typeahead when available)\n }\n </div>\n <div class=\"invalid-feedback\">\n Name of Term is required\n </div>\n </div>\n\n <!-- Accession (AC) -->\n <div class=\"col-md-6\">\n <label for=\"AC\" class=\"form-label\">\n Accession <small class=\"text-muted\">(AC)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"AC\"\n formControlName=\"AC\"\n placeholder=\"e.g., PSI-MS:1001251\">\n <div class=\"form-text\">PSI-MS or other ontology accession</div>\n </div>\n\n <!-- Cleavage Site (CS) -->\n <div class=\"col-md-12\">\n <label for=\"CS\" class=\"form-label\">\n Cleavage Site <small class=\"text-muted\">(CS)</small>\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"CS\"\n formControlName=\"CS\"\n placeholder=\"e.g., (?<=[KR])(?![P])\">\n <div class=\"form-text\">Regular expression pattern for cleavage site specificity</div>\n </div>\n\n </div>\n\n <!-- Preview -->\n @if (cleavageForm.valid && cleavageForm.get('NT')?.value) {\n <div class=\"mt-3 p-2 bg-body-secondary border rounded\">\n <small class=\"text-muted fw-semibold\">Preview:</small>\n <div class=\"font-monospace small\">{{ value \|\| 'Building...' }}</div>\n </div>\n }\n\n <!-- Validation Summary -->\n @if (cleavageForm.invalid && cleavageForm.touched) {\n <div class=\"alert alert-warning mt-3\">\n <small>\n <i class=\"bi bi-exclamation-triangle me-1\"></i>\n <strong>Required field:</strong> Name of Term (NT) must be filled.\n </small>\n </div>\n }\n</form>\n","import { Component, Input, Output, EventEmitter, OnInit, signal, inject } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbActiveModal, NgbModule, NgbNavModule } from '@ng-bootstrap/ng-bootstrap';\nimport { Observable, of, catchError, debounceTime, distinctUntilChanged, tap, switchMap, map } from 'rxjs';\nimport { MetadataColumn, OntologySuggestion, FavouriteMetadataOption, FavouriteMetadataOptionCreateRequest, OntologyType } from '../../models';\nimport { FavouriteMetadataOptionService, MetadataColumnService, MetadataColumnTemplateService } from '../../services';\nimport { AuthService, User, LabGroupService } from '@noatgnu/cupcake-core';\nimport { SdrfSyntaxService, SyntaxType } from '../../services/sdrf-syntax';\nimport { SdrfAgeInput, SdrfModificationInput, SdrfCleavageInput, SdrfSpikedCompoundInput } from '../';\n\n\nexport interface MetadataValueEditConfig {\n columnId?: number;\n columnName: string;\n columnType: string;\n ontologyType?: string;\n enableTypeahead?: boolean;\n currentValue?: string;\n context: 'template' \| 'table' \| 'pool' \| 'favorite_management';\n templateId?: number;\n tableId?: number;\n poolId?: number;\n customOntologyFilters?: Record<string, any>;\n enableMultiSampleEdit?: boolean;\n sampleData?: { index: number; value: string; sourceName?: string }[];\n maxSampleCount?: number;\n}\n\n@Component({\n selector: 'ccv-metadata-value-edit-modal',\n standalone: true,\n imports: [\n CommonModule,\n ReactiveFormsModule,\n NgbModule,\n NgbNavModule,\n SdrfAgeInput,\n SdrfModificationInput,\n SdrfCleavageInput,\n SdrfSpikedCompoundInput\n ],\n templateUrl: './metadata-value-edit-modal.html',\n styleUrl: './metadata-value-edit-modal.scss'\n})\nexport class MetadataValueEditModal implements OnInit {\n @Input() config!: MetadataValueEditConfig;\n @Output() valueSaved = new EventEmitter<string \| { value: string; sampleIndices: number[] }>();\n\n editForm: FormGroup;\n isLoading = signal(false);\n isLoadingSuggestions = signal(false);\n searchType = signal<'icontains' \| 'istartswith'>('icontains');\n\n isLoadingFavorites = signal(false);\n userFavorites = signal<FavouriteMetadataOption[]>([]);\n labGroupFavorites = signal<FavouriteMetadataOption[]>([]);\n globalFavorites = signal<FavouriteMetadataOption[]>([]);\n selectedFavorite = signal<FavouriteMetadataOption \| null>(null);\n\n currentUser = signal<User \| null>(null);\n userLabGroups = signal<number[]>([]);\n\n activeFavoritesTab: 'user' \| 'lab_group' \| 'global' = 'user';\n\n private sdrfSyntaxService = inject(SdrfSyntaxService);\n specialSyntaxType = signal<SyntaxType \| null>(null);\n showSpecialInput = signal(false);\n specialInputValue = signal('');\n\n selectedSampleIndices = signal<Set<number>>(new Set());\n showSamplePanel = signal(false);\n\n constructor(\n private fb: FormBuilder,\n private activeModal: NgbActiveModal,\n private authService: AuthService,\n private favouriteMetadataOptionService: FavouriteMetadataOptionService,\n private metadataColumnService: MetadataColumnService,\n private metadataColumnTemplateService: MetadataColumnTemplateService,\n private labGroupService: LabGroupService\n ) {\n this.editForm = this.fb.group({\n value: ['', [Validators.maxLength(500)]]\n });\n }\n\n ngOnInit() {\n\n const syntaxType = this.sdrfSyntaxService.detectSpecialSyntax(\n this.config.columnName,\n this.config.columnType\n );\n\n if (syntaxType) {\n this.specialSyntaxType.set(syntaxType);\n this.showSpecialInput.set(true);\n this.specialInputValue.set(this.config?.currentValue \|\| '');\n }\n\n if (this.config?.currentValue) {\n this.editForm.patchValue({\n value: this.config.currentValue\n });\n }\n\n this.currentUser.set(this.authService.getCurrentUser());\n\n if (this.currentUser()) {\n this.loadUserLabGroups();\n }\n\n this.loadFavoriteOptions();\n\n\n if (this.config?.enableMultiSampleEdit && this.config?.sampleData) {\n this.showSamplePanel.set(true);\n console.log('Multi-sample editing enabled with', this.config.sampleData.length, 'samples');\n } else {\n console.log('Multi-sample editing not enabled:', {\n enableMultiSampleEdit: this.config?.enableMultiSampleEdit,\n hasSampleData: !!this.config?.sampleData,\n sampleDataLength: this.config?.sampleData?.length\n });\n }\n\n this.editForm.get('value')?.valueChanges.subscribe((newValue) => {\n const selected = this.selectedFavorite();\n if (selected && selected.value !== newValue) {\n this.selectedFavorite.set(null);\n }\n });\n }\n\n\n onCancel() {\n this.activeModal.dismiss();\n }\n\n onClose() {\n this.isLoading.set(false);\n this.activeModal.close();\n }\n\n get title(): string {\n return `Edit ${this.config?.columnName \|\| 'Metadata Value'}`;\n }\n\n get hasOntologyType(): boolean {\n return !!(this.config?.ontologyType && this.config.ontologyType.length > 0 && this.config.enableTypeahead);\n }\n\n get ontologyTypeLabel(): string {\n return this.config?.ontologyType \|\| '';\n }\n\n get isFromFavoriteManagement(): boolean {\n return this.config?.context === 'favorite_management';\n }\n\n // Ontology autocomplete methods\n searchOntology = (text$: Observable<string>): Observable<OntologySuggestion[]> => {\n return text$.pipe(\n debounceTime(200),\n distinctUntilChanged(),\n tap(() => this.isLoadingSuggestions.set(true)),\n switchMap(term => {\n if (term.length < 2 \|\| !this.hasOntologyType) {\n this.isLoadingSuggestions.set(false);\n return of([]);\n }\n\n if (this.config.context === 'table' && this.config.columnId) {\n return this.metadataColumnService.getOntologySuggestions({\n columnId: this.config.columnId,\n search: term,\n limit: 10,\n searchType: this.searchType()\n }).pipe(\n switchMap(response => of(response.suggestions \|\| [])),\n catchError(() => of([])),\n tap(() => this.isLoadingSuggestions.set(false))\n );\n } else if ((this.config.context === 'template' \|\| this.config.context === 'favorite_management') && this.config.templateId) {\n return this.metadataColumnTemplateService.getOntologySuggestions({\n templateId: this.config.templateId,\n search: term,\n limit: 10,\n searchType: this.searchType()\n }).pipe(\n map(response => response.suggestions \|\| []),\n catchError(error => {\n console.error('Error getting ontology suggestions:', error);\n return of([]);\n }),\n tap(() => this.isLoadingSuggestions.set(false))\n );\n } else {\n this.isLoadingSuggestions.set(false);\n return of([]);\n }\n })\n );\n };\n\n formatSuggestion = (suggestion: OntologySuggestion): string => {\n return suggestion.displayName \|\| suggestion.value;\n };\n\n inputFormatter = (suggestion: OntologySuggestion): string => {\n if (suggestion && suggestion.ontologyType === OntologyType.MS_UNIQUE_VOCABULARIES && suggestion.fullData && suggestion.fullData.name) {\n if (suggestion.fullData.accession) {\n return `NT=${suggestion.fullData.name};AC=${suggestion.fullData.accession}`;\n } else {\n return suggestion.fullData.name;\n }\n }\n\n // For other ontology types, use regular value\n return suggestion.displayName \|\| suggestion.value \|\| String(suggestion);\n };\n\n onSuggestionSelected = (event: any): void => {\n if (event.item) {\n const suggestion = event.item;\n let displayValue: string;\n\n // Extract the proper display value based on suggestion type\n if (suggestion.fullData && suggestion.fullData.name) {\n // For ontology suggestions with fullData, format according to SDRF syntax\n if (suggestion.fullData.accession) {\n // Use SDRF syntax: NT={name};AC={accession}\n displayValue = `NT=${suggestion.fullData.name};AC=${suggestion.fullData.accession}`;\n } else {\n // Only name available, use just the name\n displayValue = suggestion.fullData.name;\n }\n } else if (suggestion.displayName) {\n // For standard ontology suggestions, use displayName\n displayValue = suggestion.displayName;\n } else if (suggestion.value) {\n // Fallback to basic value\n displayValue = suggestion.value;\n } else {\n // Last resort\n displayValue = String(suggestion);\n }\n\n this.editForm.get('value')?.setValue(displayValue);\n this.editForm.get('value')?.markAsTouched();\n }\n };\n\n onSearchTypeChange(type: 'icontains' \| 'istartswith'): void {\n this.searchType.set(type);\n }\n\n clearValue(): void {\n this.editForm.get('value')?.setValue('');\n this.editForm.get('value')?.markAsTouched();\n this.selectedFavorite.set(null); // Clear selected favorite when manually clearing\n }\n\n // Favorite options methods\n loadFavoriteOptions(): void {\n if (!this.config?.columnName \|\| !this.config?.columnType) return;\n\n this.isLoadingFavorites.set(true);\n\n // Build base query parameters for column name\n const baseQueryParams = {\n name: this.config.columnName,\n limit: 10\n };\n\n // Load user favorites\n const currentUser = this.currentUser();\n if (currentUser?.id) {\n this.favouriteMetadataOptionService.getFavouriteMetadataOptions({\n ...baseQueryParams,\n userId: currentUser.id\n }).subscribe({\n next: (response) => {\n this.userFavorites.set(response.results);\n },\n error: () => this.userFavorites.set([])\n });\n }\n\n // Load lab group favorites - load for first lab group if user has any\n const userLabGroups = this.userLabGroups();\n if (userLabGroups.length > 0) {\n this.favouriteMetadataOptionService.getFavouriteMetadataOptions({\n ...baseQueryParams,\n labGroupId: userLabGroups[0] // Use first lab group for now\n }).subscribe({\n next: (response) => {\n this.labGroupFavorites.set(response.results);\n },\n error: () => this.labGroupFavorites.set([])\n });\n } else {\n this.labGroupFavorites.set([]);\n }\n\n // Load global favorites\n this.favouriteMetadataOptionService.getFavouriteMetadataOptions({\n ...baseQueryParams,\n isGlobal: true\n }).subscribe({\n next: (response) => {\n this.globalFavorites.set(response.results);\n this.isLoadingFavorites.set(false);\n // Set initial active tab based on available favorites\n this.setInitialActiveFavoritesTab();\n },\n error: () => {\n this.globalFavorites.set([]);\n this.isLoadingFavorites.set(false);\n // Set initial active tab based on available favorites\n this.setInitialActiveFavoritesTab();\n }\n });\n }\n\n selectFavorite(favorite: FavouriteMetadataOption): void {\n const favoriteValue = favorite.value \|\| '';\n\n // Set the form value\n this.editForm.get('value')?.setValue(favoriteValue);\n this.editForm.get('value')?.markAsTouched();\n this.selectedFavorite.set(favorite);\n\n if (this.showSpecialInput() && this.specialSyntaxType()) {\n this.specialInputValue.set(favoriteValue);\n }\n\n if (favorite.columnTemplate && favorite.columnTemplate !== this.config.templateId) {\n this.config.templateId = favorite.columnTemplate;\n }\n\n if (this.hasCustomDisplayValue(favorite)) {\n console.log(`Selected \"${favorite.displayValue}\" (value: ${favorite.value})`);\n }\n }\n\n onFavoriteSelected(event: Event, favoritesList: FavouriteMetadataOption[]): void {\n const selectElement = event.target as HTMLSelectElement;\n const favoriteId = selectElement.value;\n\n if (!favoriteId) {\n return; // No selection made\n }\n\n const selectedFavorite = favoritesList.find(fav => fav.id?.toString() === favoriteId);\n if (selectedFavorite) {\n this.selectFavorite(selectedFavorite);\n }\n }\n\n setActiveFavoritesTab(tab: 'user' \| 'lab_group' \| 'global'): void {\n this.activeFavoritesTab = tab;\n }\n\n setInitialActiveFavoritesTab(): void {\n // Set the first available tab as active\n if (this.userFavorites().length > 0) {\n this.activeFavoritesTab = 'user';\n } else if (this.labGroupFavorites().length > 0) {\n this.activeFavoritesTab = 'lab_group';\n } else if (this.globalFavorites().length > 0) {\n this.activeFavoritesTab = 'global';\n }\n }\n\n addToFavorites(scope: 'user' \| 'lab_group' \| 'global' = 'user'): void {\n const value = this.editForm.get('value')?.value;\n if (!value \|\| !this.config?.columnName \|\| !this.config?.columnType) return;\n\n const newFavorite: FavouriteMetadataOptionCreateRequest = {\n name: this.config.columnName,\n type: this.config.columnType,\n columnTemplate: this.config.templateId \|\| undefined,\n value: value,\n displayValue: value,\n isGlobal: scope === 'global',\n user: scope === 'user' ? this.currentUser()?.id : undefined,\n labGroup: scope === 'lab_group' ? this.userLabGroups()[0] \|\| undefined : undefined\n };\n\n this.favouriteMetadataOptionService.createFavouriteMetadataOption(newFavorite).subscribe({\n next: (created) => {\n // Add to appropriate list\n if (scope === 'user') {\n this.userFavorites.set([...this.userFavorites(), created]);\n } else if (scope === 'lab_group') {\n this.labGroupFavorites.set([...this.labGroupFavorites(), created]);\n } else {\n this.globalFavorites.set([...this.globalFavorites(), created]);\n }\n },\n error: (error) => {\n console.error('Error adding to favorites:', error);\n }\n });\n }\n\n get hasFavorites(): boolean {\n return this.userFavorites().length > 0 \|\|\n this.labGroupFavorites().length > 0 \|\|\n this.globalFavorites().length > 0;\n }\n\n getFavoriteDisplayValue(favorite: FavouriteMetadataOption): string {\n return favorite.displayValue \|\| favorite.value \|\| '';\n }\n\n getFavoriteTooltip(favorite: FavouriteMetadataOption): string {\n const displayValue = favorite.displayValue \|\| favorite.value \|\| '';\n const actualValue = favorite.value \|\| '';\n\n if (favorite.displayValue && favorite.displayValue !== actualValue) {\n return `${displayValue}\\n\\nActual value: ${actualValue}`;\n }\n\n return displayValue;\n }\n\n hasCustomDisplayValue(favorite: FavouriteMetadataOption): boolean {\n return !!(favorite.displayValue &&\n favorite.displayValue !== favorite.value &&\n favorite.displayValue.trim() !== '');\n }\n\n getSelectedFavoriteInfo(): string {\n const selected = this.selectedFavorite();\n const currentValue = this.editForm.get('value')?.value;\n\n if (!selected \|\| !currentValue \|\| selected.value !== currentValue) {\n return '';\n }\n\n if (this.hasCustomDisplayValue(selected)) {\n return `Selected from favorite: \"${selected.displayValue}\"`;\n }\n\n return '';\n }\n\n loadUserLabGroups(): void {\n // Load user's lab groups\n this.labGroupService.getMyLabGroups({ limit: 10 }).subscribe({\n next: (response) => {\n const labGroupIds = response.results.map(group => group.id!);\n this.userLabGroups.set(labGroupIds);\n },\n error: (error) => {\n console.error('Error loading user lab groups:', error);\n this.userLabGroups.set([]);\n }\n });\n }\n\n // SDRF Special Syntax Methods\n onSpecialInputChange(value: string): void {\n this.specialInputValue.set(value);\n this.editForm.patchValue({ value });\n }\n\n toggleSpecialInput(): void {\n this.showSpecialInput.set(!this.showSpecialInput());\n\n if (!this.showSpecialInput()) {\n // Switching to normal input, sync the current value\n this.editForm.patchValue({ value: this.specialInputValue() });\n }\n }\n\n getSpecialInputTitle(): string {\n const syntaxType = this.specialSyntaxType();\n switch (syntaxType) {\n case 'age': return 'Age Format Editor';\n case 'modification': return 'Modification Parameters Editor';\n case 'cleavage': return 'Cleavage Agent Editor';\n case 'spiked_compound': return 'Spiked Compound Editor';\n default: return 'Special Format Editor';\n }\n }\n\n // Multi-sample editing methods\n get hasMultiSampleEdit(): boolean {\n return !!(this.config?.enableMultiSampleEdit && this.config?.sampleData && this.config.sampleData.length > 0);\n }\n\n get sampleData(): { index: number; value: string; sourceName?: string }[] {\n return this.config?.sampleData \|\| [];\n }\n\n toggleSampleSelection(sampleIndex: number): void {\n const current = new Set(this.selectedSampleIndices());\n if (current.has(sampleIndex)) {\n current.delete(sampleIndex);\n } else {\n current.add(sampleIndex);\n }\n this.selectedSampleIndices.set(current);\n }\n\n selectAllSamples(): void {\n const allIndices = new Set(this.sampleData.map(s => s.index));\n this.selectedSampleIndices.set(allIndices);\n }\n\n clearSampleSelection(): void {\n this.selectedSampleIndices.set(new Set());\n }\n\n get selectedSampleCount(): number {\n return this.selectedSampleIndices().size;\n }\n\n get totalSampleCount(): number {\n return this.sampleData.length;\n }\n\n isSampleSelected(sampleIndex: number): boolean {\n return this.selectedSampleIndices().has(sampleIndex);\n }\n\n // Override the onSubmit method to handle multi-sample editing\n onSubmit(): void {\n if (this.editForm.valid) {\n this.isLoading.set(true);\n const rawValue = this.editForm.get('value')?.value \|\| '';\n\n // If the form contains an object (ontology suggestion), format it properly\n let value: string;\n if (typeof rawValue === 'object' && rawValue !== null) {\n // For MS Unique Vocabularies, use SDRF formatting\n if (rawValue.ontologyType === OntologyType.MS_UNIQUE_VOCABULARIES && rawValue.fullData && rawValue.fullData.name) {\n if (rawValue.fullData.accession) {\n value = `NT=${rawValue.fullData.name};AC=${rawValue.fullData.accession}`;\n } else {\n value = rawValue.fullData.name;\n }\n } else {\n // For other ontology types, use the regular value\n value = rawValue.displayName \|\| rawValue.value \|\| String(rawValue);\n }\n } else {\n value = String(rawValue);\n }\n\n\n // If multi-sample editing is enabled and samples are selected, include the sample indices\n if (this.hasMultiSampleEdit && this.selectedSampleCount > 0) {\n const selectedIndices = Array.from(this.selectedSampleIndices());\n this.valueSaved.emit({ value, sampleIndices: selectedIndices });\n } else {\n this.valueSaved.emit(value);\n }\n }\n }\n}\n","<div class=\"modal-header\">\n <h4 class=\"modal-title\">\n <i class=\"bi bi-pencil-square me-2\"></i>{{ title }}\n </h4>\n <button type=\"button\" class=\"btn-close\" (click)=\"onCancel()\"></button>\n</div>\n\n<div class=\"modal-body\">\n <div class=\"row\">\n <!-- Main Content -->\n <div [class]=\"hasMultiSampleEdit ? 'col-md-8' : 'col-12'\">\n <form [formGroup]=\"editForm\" (ngSubmit)=\"onSubmit()\">\n\n <!-- Column Information -->\n <div class=\"mb-3\">\n <div class=\"row\">\n <div class=\"col-md-6\">\n <small class=\"text-muted\">Column Name:</small>\n <div class=\"fw-semibold\">{{ config.columnName }}</div>\n </div>\n <div class=\"col-md-6\">\n <small class=\"text-muted\">Column Type:</small>\n <div><span class=\"badge bg-light text-dark\">{{ config.columnType }}</span></div>\n </div>\n </div>\n @if (hasOntologyType) {\n <div class=\"mt-2\">\n <small class=\"text-muted\">Ontology Type:</small>\n <div><span class=\"badge bg-info\">{{ ontologyTypeLabel }}</span></div>\n </div>\n }\n </div>\n\n <hr class=\"mb-4\">\n\n <!-- Favorite Options Section -->\n @if (hasFavorites && !isLoadingFavorites()) {\n <div class=\"mb-4\">\n <h6 class=\"text-muted mb-3\">\n <i class=\"bi bi-heart-fill me-2 text-danger\"></i>Recommended Values\n </h6>\n\n <!-- Favorites Navigation Tabs -->\n <ul ngbNav #favoritesNav=\"ngbNav\" [(activeId)]=\"activeFavoritesTab\" class=\"nav-tabs\">\n @if (userFavorites().length > 0) {\n <li [ngbNavItem]=\"'user'\">\n <button ngbNavLink>\n <i class=\"bi bi-person-fill me-1\"></i>Your Favorites\n <span class=\"badge bg-primary ms-1\">{{ userFavorites().length }}</span>\n </button>\n <ng-template ngbNavContent>\n <div class=\"mt-3\">\n <select \n class=\"form-select\" \n size=\"5\" \n (change)=\"onFavoriteSelected($event, userFavorites())\">\n <option value=\"\">Select a favorite value...</option>\n @for (favorite of userFavorites(); track favorite.id) {\n <option [value]=\"favorite.id\">\n {{ getFavoriteDisplayValue(favorite) }}\n @if (hasCustomDisplayValue(favorite)) { (Custom Display) }\n </option>\n }\n </select>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>Your personal favorite values for this column\n </div>\n </div>\n </ng-template>\n </li>\n }\n\n @if (labGroupFavorites().length > 0) {\n <li [ngbNavItem]=\"'lab_group'\">\n <button ngbNavLink>\n <i class=\"bi bi-people-fill me-1\"></i>Lab Group\n <span class=\"badge bg-info ms-1\">{{ labGroupFavorites().length }}</span>\n </button>\n <ng-template ngbNavContent>\n <div class=\"mt-3\">\n <select \n class=\"form-select\" \n size=\"5\" \n (change)=\"onFavoriteSelected($event, labGroupFavorites())\">\n <option value=\"\">Select a favorite value...</option>\n @for (favorite of labGroupFavorites(); track favorite.id) {\n <option [value]=\"favorite.id\">\n {{ getFavoriteDisplayValue(favorite) }}\n @if (hasCustomDisplayValue(favorite)) { (Custom Display) }\n </option>\n }\n </select>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>Favorite values shared by your lab group\n </div>\n </div>\n </ng-template>\n </li>\n }\n\n @if (globalFavorites().length > 0) {\n <li [ngbNavItem]=\"'global'\">\n <button ngbNavLink>\n <i class=\"bi bi-globe me-1\"></i>Global\n <span class=\"badge bg-success ms-1\">{{ globalFavorites().length }}</span>\n </button>\n <ng-template ngbNavContent>\n <div class=\"mt-3\">\n <select \n class=\"form-select\" \n size=\"5\" \n (change)=\"onFavoriteSelected($event, globalFavorites())\">\n <option value=\"\">Select a favorite value...</option>\n @for (favorite of globalFavorites(); track favorite.id) {\n <option [value]=\"favorite.id\">\n {{ getFavoriteDisplayValue(favorite) }}\n @if (hasCustomDisplayValue(favorite)) { (Custom Display) }\n </option>\n }\n </select>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>Globally recommended values for this column\n </div>\n </div>\n </ng-template>\n </li>\n }\n </ul>\n\n <div [ngbNavOutlet]=\"favoritesNav\" class=\"mt-3\"></div>\n\n <hr class=\"my-3\">\n </div>\n }\n\n @if (isLoadingFavorites()) {\n <div class=\"text-center mb-4\">\n <div class=\"spinner-border spinner-border-sm text-primary me-2\"></div>\n <small class=\"text-muted\">Loading favorite options...</small>\n </div>\n <hr class=\"my-3\">\n }\n\n <!-- Value Input Section -->\n <div class=\"mb-3\">\n <div class=\"d-flex justify-content-between align-items-center mb-2\">\n <label for=\"metadataValue\" class=\"form-label mb-0\">\n Metadata Value\n @if (hasOntologyType) {\n <span class=\"badge bg-success ms-2\">\n <i class=\"bi bi-search me-1\"></i>Autocomplete Available\n </span>\n }\n @if (specialSyntaxType()) {\n <span class=\"badge bg-info ms-2\">\n <i class=\"bi bi-gear me-1\"></i>{{ getSpecialInputTitle() }}\n </span>\n }\n </label>\n\n @if (specialSyntaxType()) {\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"specialInputToggle\"\n [checked]=\"showSpecialInput()\"\n (change)=\"toggleSpecialInput()\">\n <label class=\"form-check-label small text-muted\" for=\"specialInputToggle\">\n Enhanced Editor\n </label>\n </div>\n }\n </div>\n\n <!-- Special SDRF Syntax Input Components -->\n @if (showSpecialInput() && specialSyntaxType()) {\n <div class=\"border rounded p-3 mb-3 bg-body-secondary\">\n <div class=\"mb-2\">\n <small class=\"text-muted fw-semibold\">\n <i class=\"bi bi-gear me-1\"></i>{{ getSpecialInputTitle() }}\n </small>\n </div>\n\n @switch (specialSyntaxType()) {\n @case ('age') {\n <ccv-sdrf-age-input\n [value]=\"specialInputValue()\"\n (valueChange)=\"onSpecialInputChange($event)\">\n </ccv-sdrf-age-input>\n }\n @case ('modification') {\n <ccv-sdrf-modification-input\n [value]=\"specialInputValue()\"\n [columnId]=\"config.columnId ?? null\"\n [templateId]=\"config.templateId ?? null\"\n (valueChange)=\"onSpecialInputChange($event)\">\n </ccv-sdrf-modification-input>\n }\n @case ('cleavage') {\n <ccv-sdrf-cleavage-input\n [value]=\"specialInputValue()\"\n [columnId]=\"config.columnId ?? null\"\n [templateId]=\"config.templateId ?? null\"\n (valueChange)=\"onSpecialInputChange($event)\">\n </ccv-sdrf-cleavage-input>\n }\n @case ('spiked_compound') {\n <ccv-sdrf-spiked-compound-input\n [value]=\"specialInputValue()\"\n (valueChange)=\"onSpecialInputChange($event)\">\n </ccv-sdrf-spiked-compound-input>\n }\n }\n\n <div class=\"form-text mt-2\">\n <i class=\"bi bi-info-circle me-1\"></i>\n Use the enhanced editor for structured input, or toggle off for manual text entry.\n </div>\n </div>\n }\n\n @if (hasOntologyType && !showSpecialInput()) {\n <!-- Search type selection for ontology -->\n <div class=\"mb-2\">\n <small class=\"text-muted d-block mb-1\">Search Mode:</small>\n <div class=\"btn-group btn-group-sm\" role=\"group\">\n <button\n type=\"button\"\n class=\"btn\"\n [class]=\"searchType() === 'icontains' ? 'btn-primary' : 'btn-outline-primary'\"\n (click)=\"onSearchTypeChange('icontains')\">\n <i class=\"bi bi-search me-1\"></i>Contains\n </button>\n <button\n type=\"button\"\n class=\"btn\"\n [class]=\"searchType() === 'istartswith' ? 'btn-primary' : 'btn-outline-primary'\"\n (click)=\"onSearchTypeChange('istartswith')\">\n <i class=\"bi bi-arrow-right me-1\"></i>Starts with\n </button>\n </div>\n </div>\n\n <!-- Typeahead input for ontology suggestions -->\n <div class=\"input-group\">\n <input\n type=\"text\"\n class=\"form-control\"\n [class.border-success]=\"selectedFavorite() !== null\"\n id=\"metadataValue\"\n formControlName=\"value\"\n placeholder=\"Type to search ontology suggestions...\"\n [ngbTypeahead]=\"searchOntology\"\n [resultFormatter]=\"formatSuggestion\"\n [inputFormatter]=\"inputFormatter\"\n (selectItem)=\"onSuggestionSelected($event)\"\n [editable]=\"true\"\n [showHint]=\"true\"\n [focusFirst]=\"false\"\n container=\"body\">\n @if (isLoadingSuggestions()) {\n <span class=\"input-group-text\">\n <div class=\"spinner-border spinner-border-sm\" role=\"status\">\n <span class=\"visually-hidden\">Loading...</span>\n </div>\n </span>\n } @else {\n <span class=\"input-group-text\">\n <i class=\"bi bi-search text-muted\"></i>\n </span>\n }\n <button\n type=\"button\"\n class=\"btn btn-outline-secondary\"\n (click)=\"clearValue()\"\n title=\"Clear value\">\n <i class=\"bi bi-x\"></i>\n </button>\n </div>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>\n Search {{ searchType() === 'icontains' ? 'contains' : 'starts with' }} for {{ ontologyTypeLabel }} ontology\n </div>\n } @else if (!showSpecialInput()) {\n <!-- Regular input when no ontology type or special input is disabled -->\n <div class=\"input-group\">\n <input\n type=\"text\"\n class=\"form-control\"\n [class.border-success]=\"selectedFavorite() !== null\"\n id=\"metadataValue\"\n formControlName=\"value\"\n placeholder=\"Enter metadata value\">\n <button\n type=\"button\"\n class=\"btn btn-outline-secondary\"\n (click)=\"clearValue()\"\n title=\"Clear value\">\n <i class=\"bi bi-x\"></i>\n </button>\n </div>\n <div class=\"form-text text-muted\">\n @if (specialSyntaxType()) {\n Manual text entry mode. Use the Enhanced Editor toggle for structured {{ specialSyntaxType() }} input.\n } @else {\n Enter the value manually (no ontology suggestions available for this column type)\n }\n </div>\n }\n </div>\n\n <!-- Character count and value info -->\n <div class=\"mb-3\">\n <div class=\"d-flex justify-content-between align-items-center\">\n <small class=\"text-muted\">\n Characters: {{ editForm.get('value')?.value?.length \|\| 0 }}/500\n </small>\n @if (getSelectedFavoriteInfo()) {\n <small class=\"text-info\">\n <i class=\"bi bi-info-circle me-1\"></i>{{ getSelectedFavoriteInfo() }}\n </small>\n }\n </div>\n </div>\n\n </form>\n </div>\n\n <!-- Sample Selection Panel -->\n @if (hasMultiSampleEdit) {\n <div class=\"col-md-4\">\n <div class=\"border-start ps-3\">\n <div class=\"d-flex justify-content-between align-items-center mb-3\">\n <h6 class=\"mb-0 text-muted\">\n <i class=\"bi bi-list-check me-1\"></i>Apply to Samples\n </h6>\n <span class=\"badge bg-primary\">\n {{ selectedSampleCount }}/{{ totalSampleCount }}\n </span>\n </div>\n\n <!-- Select All/Clear All Controls -->\n <div class=\"d-flex gap-1 mb-3\">\n <button \n type=\"button\" \n class=\"btn btn-outline-primary btn-sm flex-fill\"\n (click)=\"selectAllSamples()\"\n [disabled]=\"selectedSampleCount === totalSampleCount\">\n <i class=\"bi bi-check-all me-1\"></i>All\n </button>\n <button \n type=\"button\" \n class=\"btn btn-outline-secondary btn-sm flex-fill\"\n (click)=\"clearSampleSelection()\"\n [disabled]=\"selectedSampleCount === 0\">\n <i class=\"bi bi-x me-1\"></i>Clear\n </button>\n </div>\n\n <!-- Sample List -->\n <div class=\"sample-list\" style=\"max-height: 400px; overflow-y: auto;\">\n @for (sample of sampleData; track sample.index) {\n <div class=\"form-check d-flex align-items-center mb-2 p-2 rounded border-bottom\">\n <input \n class=\"form-check-input me-2\" \n type=\"checkbox\" \n [id]=\"'sample-' + sample.index\"\n [checked]=\"isSampleSelected(sample.index)\"\n (change)=\"toggleSampleSelection(sample.index)\">\n <label \n [for]=\"'sample-' + sample.index\" \n class=\"form-check-label flex-grow-1 cursor-pointer\">\n <div class=\"d-flex justify-content-between align-items-center\">\n <div>\n <div class=\"fw-semibold\">Sample {{ sample.index }}</div>\n @if (sample.sourceName) {\n <small class=\"text-muted\">{{ sample.sourceName }}</small>\n }\n </div>\n <div class=\"text-end\">\n <small class=\"text-muted\">Current:</small>\n <div class=\"small fw-mono\" [title]=\"sample.value \|\| ''\">\n {{ (sample.value && sample.value.length > 15) ? (sample.value \| slice:0:15) + '...' : (sample.value \|\| '-') }}\n </div>\n </div>\n </div>\n </label>\n </div>\n }\n </div>\n\n @if (selectedSampleCount > 0) {\n <div class=\"alert alert-info mt-3 p-2\">\n <small>\n <i class=\"bi bi-info-circle me-1\"></i>\n The value will be applied to {{ selectedSampleCount }} selected sample{{ selectedSampleCount !== 1 ? 's' : '' }}.\n </small>\n </div>\n }\n </div>\n </div>\n }\n </div>\n</div>\n\n<div class=\"modal-footer\">\n <div class=\"me-auto\">\n @if (editForm.get('value')?.value && !isLoading() && !isFromFavoriteManagement) {\n <div class=\"btn-group dropup\" ngbDropdown>\n <button\n type=\"button\"\n class=\"btn btn-outline-warning btn-sm dropdown-toggle\"\n ngbDropdownToggle>\n <i class=\"bi bi-heart me-1\"></i>Add to Favorites\n </button>\n <div class=\"dropdown-menu\" ngbDropdownMenu>\n <button\n type=\"button\"\n class=\"dropdown-item\"\n (click)=\"addToFavorites('user')\">\n <i class=\"bi bi-person me-2\"></i>Personal Favorite\n </button>\n <button\n type=\"button\"\n class=\"dropdown-item\"\n (click)=\"addToFavorites('lab_group')\">\n <i class=\"bi bi-people me-2\"></i>Lab Group Favorite\n </button>\n <button\n type=\"button\"\n class=\"dropdown-item\"\n (click)=\"addToFavorites('global')\">\n <i class=\"bi bi-globe me-2\"></i>Global Recommendation\n </button>\n </div>\n </div>\n }\n </div>\n\n <div class=\"d-flex gap-2\">\n <button type=\"button\" class=\"btn btn-outline-secondary\" (click)=\"onCancel()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n <button\n type=\"button\"\n class=\"btn btn-primary\"\n (click)=\"onSubmit()\"\n [disabled]=\"editForm.invalid \|\| isLoading()\">\n @if (isLoading()) {\n <span class=\"spinner-border spinner-border-sm me-2\"></span>\n }\n <i class=\"bi bi-check-circle me-1\"></i>\n Save Value\n </button>\n </div>\n</div>\n","import { Component, inject, signal, computed, OnInit } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { FormsModule } from '@angular/forms';\nimport { NgbActiveModal } from '@ng-bootstrap/ng-bootstrap';\nimport { LabGroup, LabGroupService } from '@noatgnu/cupcake-core';\n\nexport interface ExcelExportOptions {\n includeLabGroups: 'none' \| 'selected' \| 'all';\n selectedLabGroupIds: number[];\n includePools: boolean;\n}\n\n@Component({\n selector: 'ccv-excel-export-modal',\n standalone: true,\n imports: [CommonModule, FormsModule],\n templateUrl: './excel-export-modal.html',\n styleUrl: './excel-export-modal.scss'\n})\nexport class ExcelExportModalComponent implements OnInit {\n activeModal = inject(NgbActiveModal);\n labGroupService = inject(LabGroupService);\n\n // State\n isLoadingLabGroups = signal(false);\n availableLabGroups = signal<LabGroup[]>([]);\n \n // Form data\n includeLabGroups = signal<'none' \| 'selected' \| 'all'>('none');\n selectedLabGroupIds = signal<number[]>([]);\n includePools = signal(true);\n\n // Computed\n showLabGroupSelection = computed(() => this.includeLabGroups() === 'selected');\n canConfirm = computed(() => {\n if (this.includeLabGroups() === 'selected') {\n return this.selectedLabGroupIds().length > 0;\n }\n return true;\n });\n\n ngOnInit(): void {\n this.loadLabGroups();\n }\n\n private loadLabGroups(): void {\n this.isLoadingLabGroups.set(true);\n this.labGroupService.getMyLabGroups().subscribe({\n next: (response) => {\n this.availableLabGroups.set(response.results \|\| []);\n this.isLoadingLabGroups.set(false);\n },\n error: (error) => {\n console.error('Error loading lab groups:', error);\n this.isLoadingLabGroups.set(false);\n }\n });\n }\n\n onLabGroupToggle(labGroupId: number, checked: boolean): void {\n const currentIds = this.selectedLabGroupIds();\n if (checked) {\n if (!currentIds.includes(labGroupId)) {\n this.selectedLabGroupIds.set([...currentIds, labGroupId]);\n }\n } else {\n this.selectedLabGroupIds.set(currentIds.filter(id => id !== labGroupId));\n }\n }\n\n isLabGroupSelected(labGroupId: number): boolean {\n return this.selectedLabGroupIds().includes(labGroupId);\n }\n\n onIncludeLabGroupsChange(value: 'none' \| 'selected' \| 'all'): void {\n this.includeLabGroups.set(value);\n if (value !== 'selected') {\n this.selectedLabGroupIds.set([]);\n }\n }\n\n selectAllLabGroups(): void {\n const allIds = this.availableLabGroups().map(lg => lg.id);\n this.selectedLabGroupIds.set(allIds);\n }\n\n deselectAllLabGroups(): void {\n this.selectedLabGroupIds.set([]);\n }\n\n confirm(): void {\n const options: ExcelExportOptions = {\n includeLabGroups: this.includeLabGroups(),\n selectedLabGroupIds: this.selectedLabGroupIds(),\n includePools: this.includePools()\n };\n this.activeModal.close(options);\n }\n\n cancel(): void {\n this.activeModal.dismiss();\n }\n}\n","<div class=\"modal-header\">\n <h4 class=\"modal-title\">Excel Export Options</h4>\n <button type=\"button\" class=\"btn-close\" aria-label=\"Close\" (click)=\"cancel()\"></button>\n</div>\n\n<div class=\"modal-body\">\n <!-- Lab Groups Section -->\n <div class=\"mb-4\">\n <h6 class=\"fw-semibold mb-3\">\n <i class=\"bi bi-people me-2\"></i>Lab Group Recommendations\n </h6>\n \n <div class=\"form-check mb-2\">\n <input \n class=\"form-check-input\" \n type=\"radio\" \n name=\"includeLabGroups\"\n id=\"labGroups_none\"\n [checked]=\"includeLabGroups() === 'none'\"\n (change)=\"onIncludeLabGroupsChange('none')\">\n <label class=\"form-check-label\" for=\"labGroups_none\">\n <strong>None</strong> - Only user-specific and global recommendations\n </label>\n </div>\n\n <div class=\"form-check mb-2\">\n <input \n class=\"form-check-input\" \n type=\"radio\" \n name=\"includeLabGroups\"\n id=\"labGroups_selected\"\n [checked]=\"includeLabGroups() === 'selected'\"\n (change)=\"onIncludeLabGroupsChange('selected')\">\n <label class=\"form-check-label\" for=\"labGroups_selected\">\n <strong>Selected groups</strong> - Choose specific lab groups\n </label>\n </div>\n\n <div class=\"form-check mb-3\">\n <input \n class=\"form-check-input\" \n type=\"radio\" \n name=\"includeLabGroups\"\n id=\"labGroups_all\"\n [checked]=\"includeLabGroups() === 'all'\"\n (change)=\"onIncludeLabGroupsChange('all')\">\n <label class=\"form-check-label\" for=\"labGroups_all\">\n <strong>All groups</strong> - Include all available lab group recommendations\n </label>\n </div>\n\n <!-- Lab Group Selection -->\n @if (showLabGroupSelection()) {\n <div class=\"border rounded p-3 bg-light\">\n @if (isLoadingLabGroups()) {\n <div class=\"text-center\">\n <div class=\"spinner-border spinner-border-sm me-2\" role=\"status\"></div>\n Loading lab groups...\n </div>\n } @else if (availableLabGroups().length === 0) {\n <div class=\"text-muted text-center\">\n <i class=\"bi bi-info-circle me-2\"></i>\n No lab groups available\n </div>\n } @else {\n <div class=\"d-flex justify-content-between align-items-center mb-3\">\n <h6 class=\"mb-0\">Select Lab Groups:</h6>\n <div class=\"btn-group btn-group-sm\">\n <button \n type=\"button\" \n class=\"btn btn-outline-secondary btn-sm\"\n (click)=\"selectAllLabGroups()\"\n [disabled]=\"selectedLabGroupIds().length === availableLabGroups().length\">\n Select All\n </button>\n <button \n type=\"button\" \n class=\"btn btn-outline-secondary btn-sm\"\n (click)=\"deselectAllLabGroups()\"\n [disabled]=\"selectedLabGroupIds().length === 0\">\n Clear All\n </button>\n </div>\n </div>\n\n <div class=\"row\">\n @for (labGroup of availableLabGroups(); track labGroup.id) {\n <div class=\"col-md-6 mb-2\">\n <div class=\"form-check\">\n <input \n class=\"form-check-input\" \n type=\"checkbox\" \n [id]=\"'labGroup_' + labGroup.id\"\n [checked]=\"isLabGroupSelected(labGroup.id)\"\n (change)=\"onLabGroupToggle(labGroup.id, $event.target.checked)\">\n <label class=\"form-check-label\" [for]=\"'labGroup_' + labGroup.id\">\n {{ labGroup.name }}\n @if (labGroup.description) {\n <small class=\"text-muted d-block\">{{ labGroup.description }}</small>\n }\n </label>\n </div>\n </div>\n }\n </div>\n\n @if (selectedLabGroupIds().length > 0) {\n <div class=\"mt-2\">\n <small class=\"text-success\">\n <i class=\"bi bi-check-circle me-1\"></i>\n {{ selectedLabGroupIds().length }} group{{ selectedLabGroupIds().length > 1 ? 's' : '' }} selected\n </small>\n </div>\n }\n }\n </div>\n }\n </div>\n\n <!-- Pools Section -->\n <div class=\"mb-4\">\n <h6 class=\"fw-semibold mb-3\">\n <i class=\"bi bi-collection me-2\"></i>Sample Pools\n </h6>\n <div class=\"form-check\">\n <input \n class=\"form-check-input\" \n type=\"checkbox\" \n id=\"includePools\"\n [checked]=\"includePools()\"\n (change)=\"includePools.set($event.target.checked)\">\n <label class=\"form-check-label\" for=\"includePools\">\n Include sample pools in export\n </label>\n <small class=\"form-text text-muted d-block mt-1\">\n Creates additional worksheets with pool information and mappings\n </small>\n </div>\n </div>\n\n <!-- Summary -->\n <div class=\"alert alert-info\">\n <h6 class=\"alert-heading\">\n <i class=\"bi bi-info-circle me-2\"></i>Export Summary\n </h6>\n <ul class=\"mb-0\">\n <li>\n <strong>Lab Groups:</strong>\n @switch (includeLabGroups()) {\n @case ('none') { None - only user and global recommendations }\n @case ('selected') { \n @if (selectedLabGroupIds().length > 0) {\n {{ selectedLabGroupIds().length }} selected group{{ selectedLabGroupIds().length > 1 ? 's' : '' }}\n } @else {\n No groups selected\n }\n }\n @case ('all') { All available lab groups }\n }\n </li>\n <li><strong>Sample Pools:</strong> {{ includePools() ? 'Included' : 'Excluded' }}</li>\n </ul>\n </div>\n</div>\n\n<div class=\"modal-footer\">\n <button type=\"button\" class=\"btn btn-secondary\" (click)=\"cancel()\">\n Cancel\n </button>\n <button \n type=\"button\" \n class=\"btn btn-primary\"\n [disabled]=\"!canConfirm()\"\n (click)=\"confirm()\">\n <i class=\"bi bi-file-earmark-spreadsheet me-2\"></i>\n Export Excel\n </button>\n</div>\n","import { Component, inject, Input } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { NgbActiveModal, NgbModule } from '@ng-bootstrap/ng-bootstrap';\n\nexport interface ValidationResults {\n success: boolean;\n metadata_table_id: number;\n metadata_table_name: string;\n validation_timestamp: string;\n errors: string[];\n warnings: string[];\n}\n\n@Component({\n selector: 'ccv-validation-results-modal',\n imports: [CommonModule, NgbModule],\n templateUrl: './validation-results-modal.html',\n styleUrl: './validation-results-modal.scss'\n})\nexport class ValidationResultsModal {\n @Input() results?: ValidationResults;\n \n activeModal = inject(NgbActiveModal);\n \n formatTimestamp(timestamp: string): string {\n try {\n const date = new Date(timestamp);\n return date.toLocaleString();\n } catch (error) {\n return timestamp;\n }\n }\n}\n","<div class=\"modal-header\">\n <h4 class=\"modal-title\">\n @if (results?.success) {\n <i class=\"fa fa-check-circle me-2 text-success\"></i>\n Validation Passed\n } @else {\n <i class=\"fa fa-exclamation-triangle me-2 text-danger\"></i>\n Validation Failed\n }\n </h4>\n <button \n type=\"button\" \n class=\"btn-close\" \n aria-label=\"Close\"\n (click)=\"activeModal.dismiss()\">\n </button>\n</div>\n\n<div class=\"modal-body\">\n @if (results) {\n <div class=\"mb-3\">\n <h6 class=\"mb-2\">\n <i class=\"fa fa-table me-2 text-primary\"></i>\n {{ results.metadata_table_name }}\n </h6>\n <small class=\"text-muted\">\n <i class=\"fa fa-clock me-1\"></i>\n Validated: {{ formatTimestamp(results.validation_timestamp) }}\n </small>\n </div>\n\n @if (results.success) {\n <!-- Success message -->\n <div class=\"alert alert-success\">\n <i class=\"fa fa-check-circle me-2\"></i>\n <strong>Validation Successful!</strong>\n <p class=\"mb-0 mt-2\">\n Your metadata table complies with SDRF format standards and contains no validation errors.\n </p>\n </div>\n } @else {\n <!-- Validation failed - show errors and warnings -->\n <div class=\"alert alert-danger mb-3\">\n <i class=\"fa fa-exclamation-triangle me-2\"></i>\n <strong>Validation Failed</strong>\n <p class=\"mb-0 mt-2\">\n Your metadata table contains validation issues that need to be resolved.\n </p>\n </div>\n\n <!-- Summary -->\n <div class=\"row mb-3\">\n <div class=\"col-md-6\">\n <div class=\"card border-danger\">\n <div class=\"card-body text-center\">\n <h5 class=\"card-title text-danger\">{{ results.errors.length }}</h5>\n <p class=\"card-text\">Error{{ results.errors.length !== 1 ? 's' : '' }}</p>\n </div>\n </div>\n </div>\n <div class=\"col-md-6\">\n <div class=\"card border-warning\">\n <div class=\"card-body text-center\">\n <h5 class=\"card-title text-warning\">{{ results.warnings.length }}</h5>\n <p class=\"card-text\">Warning{{ results.warnings.length !== 1 ? 's' : '' }}</p>\n </div>\n </div>\n </div>\n </div>\n\n <!-- Errors -->\n @if (results.errors.length > 0) {\n <div class=\"mb-3\">\n <h6 class=\"text-danger\">\n <i class=\"fa fa-times-circle me-2\"></i>\n Errors ({{ results.errors.length }})\n </h6>\n <div class=\"validation-issues\">\n @for (error of results.errors; track $index) {\n <div class=\"alert alert-danger py-2 px-3\">\n <i class=\"fa fa-times-circle me-2\"></i>\n {{ error }}\n </div>\n }\n </div>\n </div>\n }\n\n <!-- Warnings -->\n @if (results.warnings.length > 0) {\n <div class=\"mb-3\">\n <h6 class=\"text-warning\">\n <i class=\"fa fa-exclamation-triangle me-2\"></i>\n Warnings ({{ results.warnings.length }})\n </h6>\n <div class=\"validation-issues\">\n @for (warning of results.warnings; track $index) {\n <div class=\"alert alert-warning py-2 px-3\">\n <i class=\"fa fa-exclamation-triangle me-2\"></i>\n {{ warning }}\n </div>\n }\n </div>\n </div>\n }\n\n <!-- Help text -->\n <div class=\"alert alert-info\">\n <i class=\"fa fa-info-circle me-2\"></i>\n <strong>Need Help?</strong>\n <ul class=\"mb-0 mt-2\">\n <li>Errors must be fixed before your metadata can be exported as valid SDRF</li>\n <li>Warnings indicate potential issues but don't prevent SDRF export</li>\n <li>Check the <a href=\"/help/sdrf-validation\" target=\"_blank\">SDRF validation guide</a> for detailed explanations</li>\n </ul>\n </div>\n }\n }\n</div>\n\n<div class=\"modal-footer\">\n <button \n type=\"button\" \n class=\"btn btn-secondary\"\n (click)=\"activeModal.dismiss()\">\n Close\n </button>\n</div>\n","import { Injectable, OnDestroy, inject } from '@angular/core';\r\nimport { BehaviorSubject, Observable, Subject } from 'rxjs';\r\nimport { takeUntil, filter, map, tap } from 'rxjs/operators';\r\nimport { NgbModal } from '@ng-bootstrap/ng-bootstrap';\r\nimport {\r\n AsyncTaskStatus,\r\n AsyncTaskCreateResponse,\r\n MetadataImportRequest,\r\n MetadataExportRequest,\r\n BulkExportRequest,\r\n BulkExcelExportRequest,\r\n MetadataValidationRequest\r\n} from '../models';\r\nimport {\r\n AsyncTaskService as LibraryAsyncTaskService,\r\n AsyncExportService,\r\n AsyncImportService,\r\n AsyncValidationService,\r\n Websocket,\r\n ElectronService\r\n} from '../services';\r\nimport { ToastService } from '@noatgnu/cupcake-core';\r\nimport { ValidationResultsModal, ValidationResults } from './validation-results-modal/validation-results-modal';\r\n\r\n@Injectable({\r\n providedIn: 'root'\r\n})\r\nexport class AsyncTaskUIService implements OnDestroy {\r\n private destroy$ = new Subject<void>();\r\n private tasksSubject = new BehaviorSubject<AsyncTaskStatus[]>([]);\r\n private isSubscribed = false;\r\n private metadataTableRefreshSubject = new Subject<number>();\r\n private taskCompletedSubject = new Subject<AsyncTaskStatus>();\r\n private exportTaskCompletedSubject = new Subject<AsyncTaskStatus>();\r\n\r\n private readonly sessionId = this.generateSessionId();\r\n private initiatedTasks = new Set<string>();\r\n\r\n private libraryAsyncTaskService = inject(LibraryAsyncTaskService);\r\n private asyncExportService = inject(AsyncExportService);\r\n private asyncImportService = inject(AsyncImportService);\r\n private asyncValidationService = inject(AsyncValidationService);\r\n private toastService = inject(ToastService);\r\n private websocket = inject(Websocket);\r\n private modalService = inject(NgbModal);\r\n private electronService = inject(ElectronService);\r\n\r\n public tasks$ = this.tasksSubject.asObservable();\r\n public activeTasks$ = this.tasks$.pipe(\r\n map(tasks => {\r\n const taskArray = Array.isArray(tasks) ? tasks : [];\r\n return taskArray.filter(task => task.status === 'QUEUED' \|\| task.status === 'STARTED');\r\n })\r\n );\r\n\r\n public metadataTableRefresh$ = this.metadataTableRefreshSubject.asObservable();\r\n public taskCompleted$ = this.taskCompletedSubject.asObservable();\r\n public exportTaskCompleted$ = this.exportTaskCompletedSubject.asObservable();\r\n\r\n constructor() {\r\n this.initializeService();\r\n }\r\n\r\n ngOnDestroy(): void {\r\n this.destroy$.next();\r\n this.destroy$.complete();\r\n }\r\n\r\n private initializeService(): void {\r\n this.startRealtimeUpdates();\r\n }\r\n\r\n startRealtimeUpdates(): void {\r\n if (this.isSubscribed) {\r\n return;\r\n }\r\n\r\n this.isSubscribed = true;\r\n\r\n if (!this.websocket.connectionState$() \|\| this.websocket.connectionState$() === 'disconnected') {\r\n this.websocket.connect();\r\n }\r\n\r\n this.websocket.isConnected$.pipe(\r\n takeUntil(this.destroy$),\r\n filter(connected => connected)\r\n ).subscribe(() => {\r\n this.websocket.subscribe('async_task_updates');\r\n });\r\n\r\n this.websocket.filterMessages('async_task.update').pipe(\r\n takeUntil(this.destroy$)\r\n ).subscribe((message: any) => {\r\n this.handleTaskUpdate(message);\r\n });\r\n\r\n this.getTasks().subscribe({\r\n next: tasks => {\r\n const taskArray = Array.isArray(tasks) ? tasks : [];\r\n this.tasksSubject.next(taskArray);\r\n },\r\n error: error => {\r\n console.error('Error loading initial tasks:', error);\r\n }\r\n });\r\n }\r\n\r\n stopRealtimeUpdates(): void {\r\n this.isSubscribed = false;\r\n this.destroy$.next();\r\n }\r\n\r\n getTasks(): Observable<AsyncTaskStatus[]> {\r\n return this.libraryAsyncTaskService.getAsyncTasks().pipe(\r\n map(response => response.results \|\| [])\r\n );\r\n }\r\n\r\n getTask(taskId: string): Observable<AsyncTaskStatus> {\r\n return this.libraryAsyncTaskService.getAsyncTask(taskId);\r\n }\r\n\r\n cancelTask(taskId: string): Observable<{message: string}> {\r\n return this.libraryAsyncTaskService.cancelTask(taskId);\r\n }\r\n\r\n private generateSessionId(): string {\r\n return `session_${Date.now()}_${Math.random().toString(36).substr(2, 9)}`;\r\n }\r\n\r\n private isTaskInitiatedByThisTab(taskId: string): boolean {\r\n return this.initiatedTasks.has(taskId);\r\n }\r\n\r\n /\r\n Mark a task as initiated by this tab for tracking purposes\r\n /\r\n monitorTask(taskId: string): void {\r\n this.initiatedTasks.add(taskId);\r\n }\r\n\r\n queueExcelExport(request: MetadataExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncExportService.excelTemplate(request).pipe(\r\n tap(response => {\r\n this.initiatedTasks.add(response.taskId);\r\n })\r\n );\r\n }\r\n\r\n queueSdrfExport(request: MetadataExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncExportService.sdrfFile(request).pipe(\r\n tap(response => {\r\n this.initiatedTasks.add(response.taskId);\r\n })\r\n );\r\n }\r\n\r\n queueSdrfImport(request: MetadataImportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncImportService.sdrfFile(request).pipe(\r\n tap(response => {\r\n this.initiatedTasks.add(response.taskId);\r\n })\r\n );\r\n }\r\n\r\n queueExcelImport(request: MetadataImportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncImportService.excelFile(request);\r\n }\r\n\r\n queueBulkSdrfExport(request: BulkExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncExportService.multipleSdrfFiles(request).pipe(\r\n tap(response => {\r\n this.initiatedTasks.add(response.taskId);\r\n })\r\n );\r\n }\r\n\r\n queueBulkExcelExport(request: BulkExcelExportRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncExportService.multipleExcelTemplates(request);\r\n }\r\n\r\n downloadTaskResult(taskId: string): void {\r\n this.libraryAsyncTaskService.getDownloadUrl(taskId).subscribe({\r\n next: (response) => {\r\n console.log('Download task result - checking Electron service:', {\r\n isElectron: this.electronService.isElectron,\r\n downloadUrl: response.downloadUrl\r\n });\r\n\r\n if (this.electronService.isElectron) {\r\n console.log('Using Electron download for:', response.downloadUrl);\r\n this.electronService.downloadFile(response.downloadUrl)\r\n .then((filePath: string) => {\r\n console.log('Electron download successful:', filePath);\r\n this.toastService.success(`File downloaded to: ${filePath}`);\r\n })\r\n .catch((error: any) => {\r\n console.error('Error downloading file with Electron:', error);\r\n this.toastService.error('Failed to download file');\r\n });\r\n } else {\r\n console.log('Using browser fallback for:', response.downloadUrl);\r\n window.open(response.downloadUrl, '_blank');\r\n }\r\n },\r\n error: (error) => {\r\n console.error('Error getting download URL:', error);\r\n this.toastService.error('Failed to get download URL');\r\n }\r\n });\r\n }\r\n\r\n validateMetadataTable(validationRequest: MetadataValidationRequest): Observable<AsyncTaskCreateResponse> {\r\n return this.asyncValidationService.metadataTable(validationRequest).pipe(\r\n tap(response => {\r\n this.initiatedTasks.add(response.taskId);\r\n })\r\n );\r\n }\r\n\r\n private handleTaskUpdate(message: any): void {\r\n const taskId = message.task_id;\r\n const currentTasks = this.tasksSubject.value;\r\n const existingTaskIndex = currentTasks.findIndex(t => t.id === taskId);\r\n\r\n if (existingTaskIndex >= 0) {\r\n const existingTask = currentTasks[existingTaskIndex];\r\n const wasRunning = existingTask.status === 'QUEUED' \|\| existingTask.status === 'STARTED';\r\n\r\n const updatedTask: AsyncTaskStatus = {\r\n ...existingTask,\r\n status: message.status,\r\n progressPercentage: message.progress_percentage \|\| existingTask.progressPercentage,\r\n progressDescription: message.progress_description \|\| existingTask.progressDescription,\r\n errorMessage: message.error_message \|\| existingTask.errorMessage,\r\n result: message.result \|\| existingTask.result,\r\n };\r\n\r\n const updatedTasks = [...currentTasks];\r\n updatedTasks[existingTaskIndex] = updatedTask;\r\n this.tasksSubject.next(updatedTasks);\r\n\r\n if (message.status === 'STARTED') {\r\n this.showTaskProgressNotification(updatedTask, existingTask);\r\n }\r\n\r\n if (wasRunning && (message.status === 'SUCCESS' \|\| message.status === 'FAILURE' \|\| message.status === 'CANCELLED')) {\r\n this.showTaskCompletionNotification(updatedTask);\r\n \r\n const isTaskFromThisTab = this.isTaskInitiatedByThisTab(updatedTask.id);\r\n this.taskCompletedSubject.next(updatedTask);\r\n\r\n if (message.status === 'SUCCESS') {\r\n if (this.isImportTask(updatedTask.taskType) && updatedTask.metadataTable) {\r\n this.metadataTableRefreshSubject.next(updatedTask.metadataTable);\r\n }\r\n\r\n if (this.isExportTask(updatedTask.taskType)) {\r\n this.exportTaskCompletedSubject.next(updatedTask);\r\n this.handleExportTaskCompletion(updatedTask);\r\n }\r\n\r\n if (updatedTask.taskType === 'VALIDATE_TABLE' && updatedTask.metadataTable) {\r\n this.metadataTableRefreshSubject.next(updatedTask.metadataTable);\r\n }\r\n\r\n if ((updatedTask.taskType === 'REORDER_TABLE_COLUMNS') && updatedTask.metadataTable) {\r\n this.metadataTableRefreshSubject.next(updatedTask.metadataTable);\r\n }\r\n }\r\n\r\n if (isTaskFromThisTab) {\r\n this.initiatedTasks.delete(updatedTask.id);\r\n }\r\n }\r\n } else {\r\n this.getTasks().subscribe(tasks => {\r\n const taskArray = Array.isArray(tasks) ? tasks : [];\r\n this.tasksSubject.next(taskArray);\r\n\r\n const refreshedTask = taskArray.find(t => t.id === taskId);\r\n if (refreshedTask && (message.status === 'SUCCESS' \|\| message.status === 'FAILURE' \|\| message.status === 'CANCELLED')) {\r\n this.showTaskCompletionNotification(refreshedTask);\r\n \r\n const isTaskFromThisTab = this.isTaskInitiatedByThisTab(refreshedTask.id);\r\n this.taskCompletedSubject.next(refreshedTask);\r\n\r\n if (message.status === 'SUCCESS') {\r\n if (this.isImportTask(refreshedTask.taskType) && refreshedTask.metadataTable) {\r\n this.metadataTableRefreshSubject.next(refreshedTask.metadataTable);\r\n }\r\n\r\n if (this.isExportTask(refreshedTask.taskType)) {\r\n this.exportTaskCompletedSubject.next(refreshedTask);\r\n this.handleExportTaskCompletion(refreshedTask);\r\n }\r\n\r\n if (refreshedTask.taskType === 'VALIDATE_TABLE' && refreshedTask.metadataTable) {\r\n this.metadataTableRefreshSubject.next(refreshedTask.metadataTable);\r\n }\r\n\r\n if ((refreshedTask.taskType === 'REORDER_TABLE_COLUMNS') && refreshedTask.metadataTable) {\r\n this.metadataTableRefreshSubject.next(refreshedTask.metadataTable);\r\n }\r\n }\r\n\r\n if (isTaskFromThisTab) {\r\n this.initiatedTasks.delete(refreshedTask.id);\r\n }\r\n }\r\n });\r\n }\r\n }\r\n\r\n private showTaskProgressNotification(updatedTask: AsyncTaskStatus, previousTask: AsyncTaskStatus): void {\r\n const taskName = this.getTaskDisplayName(updatedTask.taskType);\r\n const tableName = updatedTask.metadataTableName ? ` for \"${updatedTask.metadataTableName}\"` : '';\r\n\r\n const progressChanged = Math.floor((updatedTask.progressPercentage \|\| 0) / 25) !== Math.floor((previousTask.progressPercentage \|\| 0) / 25);\r\n const descriptionChanged = updatedTask.progressDescription !== previousTask.progressDescription;\r\n\r\n if (progressChanged \|\| (descriptionChanged && updatedTask.progressDescription)) {\r\n let message = `${taskName}${tableName}`;\r\n if (updatedTask.progressPercentage && updatedTask.progressPercentage > 0) {\r\n message += ` (${updatedTask.progressPercentage}%)`;\r\n }\r\n if (updatedTask.progressDescription) {\r\n message += `: ${updatedTask.progressDescription}`;\r\n }\r\n\r\n this.toastService.info(message, 3000);\r\n }\r\n }\r\n\r\n private showTaskCompletionNotification(task: AsyncTaskStatus): void {\r\n const taskName = this.getTaskDisplayName(task.taskType);\r\n const tableName = task.metadataTableName ? ` for \"${task.metadataTableName}\"` : '';\r\n\r\n if (task.taskType === 'VALIDATE_TABLE') {\r\n this.handleValidationTaskCompletion(task);\r\n return;\r\n }\r\n\r\n if (task.taskType === 'IMPORT_SDRF' \|\| task.taskType === 'IMPORT_EXCEL') {\r\n this.handleImportTaskCompletion(task);\r\n return;\r\n }\r\n\r\n if (task.taskType === 'REORDER_TABLE_COLUMNS' \|\| task.taskType === 'REORDER_TEMPLATE_COLUMNS') {\r\n this.handleReorderTaskCompletion(task);\r\n return;\r\n }\r\n\r\n const progressInfo = task.progressPercentage && task.progressPercentage > 0 ? ` (${task.progressPercentage}%)` : '';\r\n const progressDesc = task.progressDescription ? `: ${task.progressDescription}` : '';\r\n\r\n switch (task.status) {\r\n case 'SUCCESS':\r\n this.toastService.success(\r\n `Task Completed: ${taskName}${tableName}${progressInfo} completed successfully${progressDesc}`\r\n );\r\n break;\r\n case 'FAILURE':\r\n this.toastService.error(\r\n `Task Failed: ${taskName}${tableName}${progressInfo} failed: ${task.errorMessage \|\| 'Unknown error'}${progressDesc}`\r\n );\r\n break;\r\n case 'CANCELLED':\r\n this.toastService.warning(\r\n `Task Cancelled: ${taskName}${tableName}${progressInfo} was cancelled${progressDesc}`\r\n );\r\n break;\r\n }\r\n }\r\n\r\n getTaskDisplayName(taskType: string): string {\r\n const typeMap: Record<string, string> = {\r\n 'EXPORT_EXCEL': 'Excel export',\r\n 'EXPORT_SDRF': 'SDRF export',\r\n 'IMPORT_SDRF': 'SDRF import',\r\n 'IMPORT_EXCEL': 'Excel import',\r\n 'EXPORT_MULTIPLE_SDRF': 'Bulk SDRF export',\r\n 'EXPORT_MULTIPLE_EXCEL': 'Bulk Excel export',\r\n 'VALIDATE_TABLE': 'Table validation',\r\n 'REORDER_TABLE_COLUMNS': 'Column reordering',\r\n 'REORDER_TEMPLATE_COLUMNS': 'Template column reordering',\r\n };\r\n return typeMap[taskType] \|\| taskType;\r\n }\r\n\r\n getTaskStatusClass(status: string): string {\r\n const statusMap: Record<string, string> = {\r\n 'QUEUED': 'badge-secondary',\r\n 'STARTED': 'badge-primary',\r\n 'SUCCESS': 'badge-success',\r\n 'FAILURE': 'badge-danger',\r\n 'CANCELLED': 'badge-warning',\r\n };\r\n return statusMap[status] \|\| 'badge-secondary';\r\n }\r\n\r\n formatDuration(duration: number \| null): string {\r\n if (!duration) {\r\n return '-';\r\n }\r\n\r\n if (duration < 60) {\r\n return `${Math.round(duration)}s`;\r\n } else if (duration < 3600) {\r\n return `${Math.round(duration / 60)}m`;\r\n } else {\r\n const hours = Math.floor(duration / 3600);\r\n const minutes = Math.round((duration % 3600) / 60);\r\n return `${hours}h ${minutes}m`;\r\n }\r\n }\r\n\r\n canCancelTask(status: string): boolean {\r\n return status === 'QUEUED' \|\| status === 'STARTED';\r\n }\r\n\r\n canDownloadResult(task: AsyncTaskStatus): boolean {\r\n return task.status === 'SUCCESS' &&\r\n (task.taskType === 'EXPORT_EXCEL' \|\| task.taskType === 'EXPORT_SDRF' \|\|\r\n task.taskType === 'EXPORT_MULTIPLE_SDRF' \|\| task.taskType === 'EXPORT_MULTIPLE_EXCEL');\r\n }\r\n\r\n private isImportTask(taskType: string): boolean {\r\n return taskType === 'IMPORT_SDRF' \|\| taskType === 'IMPORT_EXCEL';\r\n }\r\n\r\n private isExportTask(taskType: string): boolean {\r\n return taskType === 'EXPORT_SDRF' \|\| taskType === 'EXPORT_EXCEL' \|\|\r\n taskType === 'EXPORT_MULTIPLE_SDRF' \|\| taskType === 'EXPORT_MULTIPLE_EXCEL';\r\n }\r\n\r\n private handleExportTaskCompletion(task: AsyncTaskStatus): void {\r\n const taskName = this.getTaskDisplayName(task.taskType);\r\n const tableName = task.metadataTableName ? ` for \"${task.metadataTableName}\"` : '';\r\n\r\n if (task.taskType === 'EXPORT_SDRF' \|\| task.taskType === 'EXPORT_EXCEL') {\r\n setTimeout(() => {\r\n this.downloadTaskResult(task.id);\r\n }, 1500);\r\n\r\n this.toastService.success(\r\n `${taskName}${tableName} completed! Starting download...`,\r\n 4000\r\n );\r\n } else {\r\n this.toastService.success(\r\n `${taskName}${tableName} completed! Check your downloads.`,\r\n 6000\r\n );\r\n }\r\n }\r\n\r\n private handleValidationTaskCompletion(task: AsyncTaskStatus): void {\r\n const taskName = this.getTaskDisplayName(task.taskType);\r\n const tableName = task.metadataTableName ? ` for \"${task.metadataTableName}\"` : '';\r\n const progressInfo = task.progressPercentage && task.progressPercentage > 0 ? ` (${task.progressPercentage}%)` : '';\r\n const progressDesc = task.progressDescription ? `: ${task.progressDescription}` : '';\r\n\r\n switch (task.status) {\r\n case 'SUCCESS':\r\n const result = task.result as any;\r\n if (result && result.success === false) {\r\n const errorCount = result.errors?.length \|\| 0;\r\n const warningCount = result.warnings?.length \|\| 0;\r\n\r\n this.toastService.error(\r\n `Validation Failed${progressInfo}: Found ${errorCount} error(s) and ${warningCount} warning(s) in \"${task.metadataTableName}\". Click to view details.${progressDesc}`,\r\n 10000\r\n );\r\n\r\n this.showValidationResultsModal(result);\r\n } else {\r\n this.toastService.success(\r\n `Validation Passed${progressInfo}: ${task.metadataTableName} is valid and complies with SDRF format${progressDesc}`\r\n );\r\n\r\n if (result) {\r\n this.showValidationResultsModal(result);\r\n }\r\n }\r\n break;\r\n case 'FAILURE':\r\n this.toastService.error(\r\n `Validation Error: ${taskName}${tableName} failed: ${task.errorMessage \|\| 'Unknown error'}`\r\n );\r\n break;\r\n case 'CANCELLED':\r\n this.toastService.warning(\r\n `Validation Cancelled: ${taskName}${tableName} was cancelled`\r\n );\r\n break;\r\n }\r\n }\r\n\r\n private showValidationResultsModal(validationResults: ValidationResults): void {\r\n const modalRef = this.modalService.open(ValidationResultsModal, {\r\n size: 'lg',\r\n backdrop: 'static',\r\n keyboard: false\r\n });\r\n\r\n modalRef.componentInstance.results = validationResults;\r\n\r\n modalRef.result.then((result) => {\r\n if (result === 'edit') {\r\n console.log('User wants to edit table to fix validation issues');\r\n }\r\n }).catch(() => {\r\n // Modal dismissed\r\n });\r\n }\r\n\r\n private handleImportTaskCompletion(task: AsyncTaskStatus): void {\r\n const taskName = this.getTaskDisplayName(task.taskType);\r\n const tableName = task.metadataTableName ? ` for \"${task.metadataTableName}\"` : '';\r\n const progressInfo = task.progressPercentage && task.progressPercentage > 0 ? ` (${task.progressPercentage}%)` : '';\r\n const progressDesc = task.progressDescription ? `: ${task.progressDescription}` : '';\r\n\r\n switch (task.status) {\r\n case 'SUCCESS':\r\n const result = task.result as any;\r\n let message = `${taskName}${tableName} completed successfully!`;\r\n\r\n if (result) {\r\n const details = [];\r\n if (result.columnsCreated \|\| result.totalColumns) {\r\n details.push(`${result.columnsCreated \|\| result.totalColumns \|\| 0} columns processed`);\r\n }\r\n if (result.poolsCreated) {\r\n details.push(`${result.poolsCreated} pools created`);\r\n }\r\n if (result.samplesProcessed) {\r\n details.push(`${result.samplesProcessed} samples processed`);\r\n }\r\n\r\n if (details.length > 0) {\r\n message = `${taskName}${tableName}${progressInfo} completed! ${details.join(', ')}.${progressDesc}`;\r\n } else {\r\n message = `${taskName}${tableName}${progressInfo} completed successfully!${progressDesc}`;\r\n }\r\n }\r\n\r\n this.toastService.success(message, 6000);\r\n break;\r\n\r\n case 'FAILURE':\r\n this.toastService.error(\r\n `${taskName} Failed${progressInfo}: ${task.errorMessage \|\| 'Import failed due to an unknown error'}${progressDesc}`\r\n );\r\n break;\r\n\r\n case 'CANCELLED':\r\n this.toastService.warning(\r\n `${taskName} Cancelled${progressInfo}: Import was cancelled${progressDesc}`\r\n );\r\n break;\r\n }\r\n }\r\n\r\n private handleReorderTaskCompletion(task: AsyncTaskStatus): void {\r\n const taskName = this.getTaskDisplayName(task.taskType);\r\n const tableName = task.metadataTableName ? ` for \"${task.metadataTableName}\"` : '';\r\n const progressInfo = task.progressPercentage && task.progressPercentage > 0 ? ` (${task.progressPercentage}%)` : '';\r\n const progressDesc = task.progressDescription ? `: ${task.progressDescription}` : '';\r\n\r\n switch (task.status) {\r\n case 'SUCCESS':\r\n const result = task.result as any;\r\n let message = `${taskName}${tableName} completed successfully!`;\r\n\r\n if (result) {\r\n const details = [];\r\n if (result.reorderedColumns) {\r\n details.push(`${result.reorderedColumns} columns reordered`);\r\n }\r\n if (result.reorderedPools) {\r\n details.push(`${result.reorderedPools} pools updated`);\r\n }\r\n if (result.schemaIdsUsed && result.schemaIdsUsed.length > 0) {\r\n details.push(`using ${result.schemaIdsUsed.length} schema(s)`);\r\n }\r\n\r\n if (details.length > 0) {\r\n message += `\\n${details.join(', ')}`;\r\n }\r\n }\r\n\r\n this.toastService.success(message, 5000);\r\n break;\r\n\r\n case 'FAILURE':\r\n this.toastService.error(\r\n `${taskName} Failed: ${task.errorMessage \|\| 'Unknown error'}${progressInfo}${progressDesc}`\r\n );\r\n break;\r\n\r\n case 'CANCELLED':\r\n this.toastService.warning(\r\n `${taskName} Cancelled: ${taskName}${tableName} was cancelled`\r\n );\r\n break;\r\n }\r\n }\r\n}","import { Component, inject, Input, signal } from '@angular/core';\r\nimport { CommonModule } from '@angular/common';\r\nimport { ReactiveFormsModule, FormBuilder } from '@angular/forms';\r\nimport { NgbActiveModal, NgbModule } from '@ng-bootstrap/ng-bootstrap';\r\n\r\nimport { AsyncTaskUIService } from '../async-task-ui';\r\nimport { ToastService } from '@noatgnu/cupcake-core';\r\nimport { MetadataValidationRequest, MetadataValidationConfig, AsyncTaskCreateResponse } from '../../models/async-task';\r\n\r\n@Component({\r\n selector: 'ccv-metadata-validation-modal',\r\n standalone: true,\r\n imports: [CommonModule, ReactiveFormsModule, NgbModule],\r\n templateUrl: './metadata-validation-modal.html',\r\n styleUrl: './metadata-validation-modal.scss'\r\n})\r\nexport class MetadataValidationModal {\r\n @Input() config?: MetadataValidationConfig;\r\n \r\n private fb = inject(FormBuilder);\r\n private asyncTaskService = inject(AsyncTaskUIService);\r\n private toastService = inject(ToastService);\r\n \r\n activeModal = inject(NgbActiveModal);\r\n \r\n isValidating = signal(false);\r\n validationError = signal<string \| null>(null);\r\n \r\n validationForm = this.fb.group({\r\n validate_sdrf_format: [true]\r\n });\r\n \r\n onSubmit(): void {\r\n if (this.validationForm.invalid \|\| !this.config) {\r\n return;\r\n }\r\n \r\n this.isValidating.set(true);\r\n this.validationError.set(null);\r\n \r\n const formValue = this.validationForm.value;\r\n const request: MetadataValidationRequest = {\r\n metadataTableId: this.config.metadataTableId,\r\n validateSdrfFormat: formValue.validate_sdrf_format ?? true\r\n };\r\n \r\n this.asyncTaskService.validateMetadataTable(request).subscribe({\r\n next: (response) => {\r\n this.toastService.success(\r\n `Validation started successfully for \"${this.config?.metadataTableName}\"`\r\n );\r\n this.activeModal.close({\r\n success: true,\r\n task_id: response.taskId,\r\n message: response.message\r\n });\r\n },\r\n error: (error) => {\r\n this.isValidating.set(false);\r\n const errorMessage = error?.error?.error \|\| error?.message \|\| 'Failed to start validation';\r\n this.validationError.set(errorMessage);\r\n this.toastService.error(`Validation failed: ${errorMessage}`);\r\n }\r\n });\r\n }\r\n}","<div class=\"modal-header\">\r\n <h4 class=\"modal-title\">\r\n <i class=\"bi bi-check-circle me-2 text-success\"></i>\r\n Validate Metadata Table\r\n </h4>\r\n <button \r\n type=\"button\" \r\n class=\"btn-close\" \r\n aria-label=\"Close\"\r\n (click)=\"activeModal.dismiss()\"\r\n [disabled]=\"isValidating()\">\r\n </button>\r\n</div>\r\n\r\n<form [formGroup]=\"validationForm\" (ngSubmit)=\"onSubmit()\">\r\n <div class=\"modal-body\">\r\n <div class=\"alert alert-info\">\r\n <i class=\"bi bi-info-circle me-2\"></i>\r\n <strong>{{ config?.metadataTableName }}</strong> will be validated against SDRF format standards using SDRFDataFrame.\r\n </div>\r\n\r\n <div class=\"row\">\r\n <div class=\"col-md-6\">\r\n <h6 class=\"mb-3\">Validation Options</h6>\r\n \r\n <div class=\"form-check mb-3\">\r\n <input \r\n class=\"form-check-input\" \r\n type=\"checkbox\" \r\n id=\"validate_sdrf_format\"\r\n formControlName=\"validate_sdrf_format\">\r\n <label class=\"form-check-label\" for=\"validate_sdrf_format\">\r\n <i class=\"bi bi-file-earmark-text me-1 text-warning\"></i>\r\n SDRF Format Validation\r\n </label>\r\n <small class=\"form-text text-muted d-block\">\r\n Validate against MAGE-TAB SDRF standard format using SDRFDataFrame\r\n </small>\r\n </div>\r\n </div>\r\n\r\n <div class=\"col-md-6\">\r\n <h6 class=\"mb-3\">What gets checked?</h6>\r\n \r\n <div class=\"validation-info\">\r\n <div class=\"mb-2\">\r\n <i class=\"bi bi-check-circle text-success me-2\"></i>\r\n Required SDRF columns presence\r\n </div>\r\n <div class=\"mb-2\">\r\n <i class=\"bi bi-check-circle text-success me-2\"></i>\r\n SDRF format compliance\r\n </div>\r\n <div class=\"mb-2\">\r\n <i class=\"bi bi-check-circle text-success me-2\"></i>\r\n Column header validation\r\n </div>\r\n <div class=\"mb-2\">\r\n <i class=\"bi bi-check-circle text-success me-2\"></i>\r\n Data structure integrity\r\n </div>\r\n </div>\r\n </div>\r\n </div>\r\n\r\n @if (validationError()) {\r\n <div class=\"alert alert-danger mt-3\">\r\n <i class=\"bi bi-exclamation-triangle me-2\"></i>\r\n {{ validationError() }}\r\n </div>\r\n }\r\n </div>\r\n\r\n <div class=\"modal-footer\">\r\n <button \r\n type=\"button\" \r\n class=\"btn btn-secondary\"\r\n (click)=\"activeModal.dismiss()\"\r\n [disabled]=\"isValidating()\">\r\n Cancel\r\n </button>\r\n \r\n <button \r\n type=\"submit\" \r\n class=\"btn btn-success\"\r\n [disabled]=\"validationForm.invalid \|\| isValidating()\">\r\n @if (isValidating()) {\r\n <span class=\"spinner-border spinner-border-sm me-2\" role=\"status\"></span>\r\n Starting Validation...\r\n } @else {\r\n <i class=\"bi bi-play me-2\"></i>\r\n Start Validation\r\n }\r\n </button>\r\n </div>\r\n</form>","import { Component, Input, Output, EventEmitter, OnInit, signal } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbActiveModal, NgbModule, NgbModal } from '@ng-bootstrap/ng-bootstrap';\nimport { MetadataTable, MetadataTableUpdateRequest, MetadataTableCreateRequest, SampleCountConfirmationError } from '../../models/metadata-table';\nimport { MetadataTableService } from '../../services/metadata-table';\nimport { LabGroupService, LabGroup } from '@noatgnu/cupcake-core';\n\n@Component({\n selector: 'ccv-metadata-table-edit-modal',\n standalone: true,\n imports: [CommonModule, ReactiveFormsModule, NgbModule],\n templateUrl: './metadata-table-edit-modal.html',\n styleUrl: './metadata-table-edit-modal.scss'\n})\nexport class MetadataTableEditModal implements OnInit {\n @Input() table?: MetadataTable; // Make optional for creation mode\n @Input() isCreateMode: boolean = false; // Add flag to determine mode\n @Output() tableSaved = new EventEmitter<MetadataTable>();\n\n editForm: FormGroup;\n isLoading = signal(false);\n availableLabGroups = signal<LabGroup[]>([]);\n isLoadingLabGroups = signal(false);\n\n constructor(\n private fb: FormBuilder,\n private activeModal: NgbActiveModal,\n private modalService: NgbModal,\n private metadataTableService: MetadataTableService,\n private labGroupService: LabGroupService\n ) {\n this.editForm = this.fb.group({\n name: ['', [Validators.required, Validators.maxLength(255)]],\n description: [''],\n sampleCount: [1, [Validators.required, Validators.min(1), Validators.max(10000)]],\n version: ['', [Validators.maxLength(50)]],\n labGroup: [null]\n });\n }\n\n ngOnInit() {\n if (this.table) {\n this.editForm.patchValue({\n name: this.table.name,\n description: this.table.description \|\| '',\n sampleCount: this.table.sampleCount,\n version: this.table.version,\n labGroup: this.table.labGroup \|\| null\n });\n }\n \n this.loadLabGroups();\n }\n\n loadLabGroups(): void {\n this.isLoadingLabGroups.set(true);\n \n this.labGroupService.getMyLabGroups({ limit: 10 }).subscribe({\n next: (response) => {\n this.availableLabGroups.set(response.results);\n this.isLoadingLabGroups.set(false);\n },\n error: (error) => {\n console.error('Error loading lab groups:', error);\n this.availableLabGroups.set([]);\n this.isLoadingLabGroups.set(false);\n }\n });\n }\n\n onSubmit(): void {\n if (this.editForm.valid) {\n this.isLoading.set(true);\n\n const formValue = this.editForm.value;\n\n if (this.isCreateMode) {\n const createData: MetadataTableCreateRequest = {\n name: formValue.name.trim(),\n description: formValue.description?.trim() \|\| undefined,\n sampleCount: formValue.sampleCount,\n version: formValue.version?.trim() \|\| undefined,\n labGroup: formValue.labGroup \|\| undefined,\n sourceApp: 'cupcake-vanilla'\n };\n\n this.performCreate(createData);\n } else if (this.table?.id) {\n const updateData: MetadataTableUpdateRequest = {\n name: formValue.name.trim(),\n description: formValue.description?.trim() \|\| undefined,\n sampleCount: formValue.sampleCount,\n version: formValue.version?.trim() \|\| undefined,\n labGroup: formValue.labGroup \|\| undefined\n };\n\n this.performUpdate(updateData);\n }\n }\n }\n\n private performCreate(createData: MetadataTableCreateRequest): void {\n this.metadataTableService.createMetadataTable(createData).subscribe({\n next: (newTable) => {\n this.tableSaved.emit(newTable);\n this.activeModal.close(newTable);\n },\n error: (error) => {\n console.error('Error creating metadata table:', error);\n this.isLoading.set(false);\n }\n });\n }\n\n private performUpdate(updateData: MetadataTableUpdateRequest, confirmed: boolean = false): void {\n if (!this.table?.id) return;\n\n if (confirmed) {\n updateData.sampleCountConfirmed = true;\n }\n\n this.metadataTableService.updateMetadataTable(this.table.id, updateData).subscribe({\n next: (updatedTable) => {\n this.tableSaved.emit(updatedTable);\n this.activeModal.close(updatedTable);\n },\n error: (error) => {\n if (this.isSampleCountConfirmationError(error)) {\n this.handleSampleCountConfirmation(error.error, updateData);\n } else {\n console.error('Error updating metadata table:', error);\n this.isLoading.set(false);\n }\n }\n });\n }\n\n private handleSampleCountConfirmation(errorData: SampleCountConfirmationError, updateData: MetadataTableUpdateRequest): void {\n this.isLoading.set(false);\n const details = errorData.sampleCountConfirmationDetails;\n\n const message = `Reducing sample count from ${details.currentSampleCount} to ${details.newSampleCount} will remove data:\n\n${details.validationResult.warnings.join('\\n')}\n\n${this.formatAffectedData(details.validationResult)}\n\nDo you want to continue?`;\n\n if (confirm(message)) {\n this.isLoading.set(true);\n this.performUpdate(updateData, true);\n }\n }\n\n private formatAffectedData(validationResult: any): string {\n let message = '';\n\n if (validationResult.affectedModifiers?.length > 0) {\n message += `\\nAffected column modifiers (${validationResult.affectedModifiers.length}):`;\n validationResult.affectedModifiers.slice(0, 5).forEach((modifier: any) => {\n message += `\\n- ${modifier.columnName} (samples: ${modifier.samples})`;\n });\n if (validationResult.affectedModifiers.length > 5) {\n message += `\\n- ... and ${validationResult.affectedModifiers.length - 5} more`;\n }\n }\n\n if (validationResult.affectedPools?.length > 0) {\n message += `\\nAffected sample pools (${validationResult.affectedPools.length}):`;\n validationResult.affectedPools.slice(0, 5).forEach((pool: any) => {\n message += `\\n- ${pool.poolName}`;\n });\n if (validationResult.affectedPools.length > 5) {\n message += `\\n- ... and ${validationResult.affectedPools.length - 5} more`;\n }\n }\n\n return message;\n }\n\n private isSampleCountConfirmationError(error: any): error is { error: SampleCountConfirmationError } {\n return error?.error?.sampleCountConfirmationDetails &&\n error?.error?.sampleCountConfirmationDetails?.requiresConfirmation === true;\n }\n\n onCancel(): void {\n this.activeModal.dismiss();\n }\n\n get title(): string {\n if (this.isCreateMode) {\n return 'Create New Metadata Table';\n }\n return `Edit ${this.table?.name \|\| 'Metadata Table'}`;\n }\n\n get hasChanges(): boolean {\n if (this.isCreateMode) {\n return this.editForm.dirty; // For creation mode, any change is valid\n }\n\n if (!this.table) return false;\n\n const formValue = this.editForm.value;\n return (\n formValue.name !== this.table.name \|\|\n formValue.description !== (this.table.description \|\| '') \|\|\n formValue.sampleCount !== this.table.sampleCount \|\|\n formValue.version !== this.table.version \|\|\n formValue.labGroup !== this.table.labGroup\n );\n }\n\n // Form validation helpers\n isFieldInvalid(fieldName: string): boolean {\n const field = this.editForm.get(fieldName);\n return !!(field && field.invalid && field.touched);\n }\n\n getFieldError(fieldName: string): string {\n const field = this.editForm.get(fieldName);\n if (!field \|\| !field.errors) return '';\n \n const displayName = this.getFieldDisplayName(fieldName);\n \n if (field.errors['required']) {\n return `${displayName} is required`;\n }\n if (field.errors['maxlength']) {\n return `${displayName} must be less than ${field.errors['maxlength'].requiredLength} characters`;\n }\n if (field.errors['min']) {\n return `${displayName} must be at least ${field.errors['min'].min}`;\n }\n if (field.errors['max']) {\n return `${displayName} must be no more than ${field.errors['max'].max}`;\n }\n \n return 'Invalid value';\n }\n\n private getFieldDisplayName(fieldName: string): string {\n const displayNames: Record<string, string> = {\n 'name': 'Table name',\n 'description': 'Description', \n 'sampleCount': 'Sample count',\n 'version': 'Version',\n 'labGroup': 'Lab group'\n };\n return displayNames[fieldName] \|\| fieldName;\n }\n}","<div class=\"modal-header\">\n <h4 class=\"modal-title\">\n <i class=\"bi bi-table me-2\"></i>{{ title }}\n </h4>\n <button type=\"button\" class=\"btn-close\" (click)=\"onCancel()\"></button>\n</div>\n\n<div class=\"modal-body\">\n <form [formGroup]=\"editForm\" (ngSubmit)=\"onSubmit()\">\n\n <!-- Table Name -->\n <div class=\"mb-3\">\n <label for=\"tableName\" class=\"form-label\">\n Table Name \n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"tableName\"\n formControlName=\"name\"\n [class.is-invalid]=\"isFieldInvalid('name')\"\n placeholder=\"Enter table name\"\n maxlength=\"255\">\n @if (isFieldInvalid('name')) {\n <div class=\"invalid-feedback\">\n {{ getFieldError('name') }}\n </div>\n }\n </div>\n\n <!-- Description -->\n <div class=\"mb-3\">\n <label for=\"tableDescription\" class=\"form-label\">\n Description\n </label>\n <textarea\n class=\"form-control\"\n id=\"tableDescription\"\n formControlName=\"description\"\n rows=\"3\"\n placeholder=\"Optional description of the metadata table\"></textarea>\n <div class=\"form-text\">\n Provide a brief description of what this metadata table contains or its purpose.\n </div>\n </div>\n\n <!-- Sample Count and Version Row -->\n <div class=\"row\">\n <div class=\"col-md-6 mb-3\">\n <label for=\"sampleCount\" class=\"form-label\">\n Sample Count \n </label>\n <input\n type=\"number\"\n class=\"form-control\"\n id=\"sampleCount\"\n formControlName=\"sampleCount\"\n [class.is-invalid]=\"isFieldInvalid('sampleCount')\"\n placeholder=\"Number of samples\"\n min=\"1\"\n max=\"10000\">\n @if (isFieldInvalid('sampleCount')) {\n <div class=\"invalid-feedback\">\n {{ getFieldError('sampleCount') }}\n </div>\n }\n <div class=\"form-text\">\n Number of samples in this metadata table (1-10,000).\n </div>\n </div>\n\n <div class=\"col-md-6 mb-3\">\n <label for=\"version\" class=\"form-label\">\n Version\n </label>\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"version\"\n formControlName=\"version\"\n [class.is-invalid]=\"isFieldInvalid('version')\"\n placeholder=\"e.g., 1.0, v2.1\"\n maxlength=\"50\">\n @if (isFieldInvalid('version')) {\n <div class=\"invalid-feedback\">\n {{ getFieldError('version') }}\n </div>\n }\n <div class=\"form-text\">\n Version identifier for this table.\n </div>\n </div>\n </div>\n\n <!-- Lab Group Assignment -->\n <div class=\"mb-3\">\n <label for=\"labGroup\" class=\"form-label\">\n Lab Group Assignment\n </label>\n @if (isLoadingLabGroups()) {\n <div class=\"d-flex align-items-center\">\n <div class=\"spinner-border spinner-border-sm me-2\" role=\"status\">\n <span class=\"visually-hidden\">Loading...</span>\n </div>\n <span class=\"text-muted\">Loading lab groups...</span>\n </div>\n } @else {\n <select\n class=\"form-select\"\n id=\"labGroup\"\n formControlName=\"labGroup\">\n <option [value]=\"null\">No lab group (Personal)</option>\n @for (group of availableLabGroups(); track group.id) {\n <option [value]=\"group.id\">{{ group.name }}</option>\n }\n </select>\n }\n <div class=\"form-text\">\n Assign this table to a lab group for shared access, or leave unassigned for personal use.\n </div>\n </div>\n\n <!-- Table Status Info (Read-only) -->\n @if (table) {\n <div class=\"mb-3\">\n <label class=\"form-label\">Current Status</label>\n <div class=\"d-flex gap-2\">\n @if (table.isLocked) {\n <span class=\"badge bg-warning\">\n <i class=\"bi bi-lock me-1\"></i>Locked\n </span>\n } @else {\n <span class=\"badge bg-success\">\n <i class=\"bi bi-unlock me-1\"></i>Unlocked\n </span>\n }\n @if (table.isPublished) {\n <span class=\"badge bg-info\">\n <i class=\"bi bi-check-circle me-1\"></i>Published\n </span>\n } @else {\n <span class=\"badge bg-secondary\">\n <i class=\"bi bi-clock me-1\"></i>Draft\n </span>\n }\n </div>\n <div class=\"form-text\">\n Lock status and publication state can be managed through advanced options.\n </div>\n </div>\n }\n\n <!-- Character Count -->\n <div class=\"mb-2\">\n <div class=\"d-flex justify-content-between align-items-center\">\n <small class=\"text-muted\">\n Name: {{ editForm.get('name')?.value?.length \|\| 0 }}/255 characters\n </small>\n @if (hasChanges) {\n <small class=\"text-info\">\n <i class=\"bi bi-info-circle me-1\"></i>Changes detected\n </small>\n }\n </div>\n </div>\n\n </form>\n</div>\n\n<div class=\"modal-footer\">\n <button type=\"button\" class=\"btn btn-outline-secondary\" (click)=\"onCancel()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n <button\n type=\"button\"\n class=\"btn btn-primary\"\n (click)=\"onSubmit()\"\n [disabled]=\"editForm.invalid \|\| isLoading() \|\| (!isCreateMode && !hasChanges)\">\n @if (isLoading()) {\n <span class=\"spinner-border spinner-border-sm me-2\"></span>\n }\n @if (isCreateMode) {\n <i class=\"bi bi-plus-circle me-1\"></i>\n Create Table\n } @else {\n <i class=\"bi bi-check-circle me-1\"></i>\n Save Changes\n }\n </button>\n</div>\n","import { Component, Input, Output, EventEmitter, OnInit, signal } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators, FormsModule } from '@angular/forms';\nimport { NgbActiveModal, NgbModule, NgbModal } from '@ng-bootstrap/ng-bootstrap';\nimport { MetadataColumn, PaginatedResponse, MetadataColumnTemplate, ONTOLOGY_TYPE_CONFIGS, COLUMN_TYPE_CONFIGS, OntologyTypeConfig, ColumnTypeConfig, ColumnType, OntologyType, OFFICIAL_SDRF_COLUMNS, SdrfColumnConfig, getSdrfColumnsByCategory, getSdrfColumnByName } from '../../../models';\nimport { MetadataValueEditModal, MetadataValueEditConfig } from '../../metadata-value-edit-modal/metadata-value-edit-modal';\nimport { MetadataColumnTemplateService, MetadataColumnTemplateQueryParams } from '../../../services/metadata-column-template';\nimport { SdrfSyntaxService } from '../../../services/sdrf-syntax';\n\n@Component({\n selector: 'ccv-column-edit-modal',\n imports: [CommonModule, ReactiveFormsModule, FormsModule, NgbModule],\n templateUrl: './column-edit-modal.html',\n styleUrl: './column-edit-modal.scss'\n})\nexport class ColumnEditModal implements OnInit {\n @Input() column: MetadataColumn \| null = null;\n @Input() templateId: number \| null = null; // Add template ID for API calls\n @Input() isEdit = false;\n @Output() columnSaved = new EventEmitter<Partial<MetadataColumn>>();\n\n editForm: FormGroup;\n isLoading = signal(false);\n showAdvancedMode = signal(false);\n\n // Selected ontology configuration (includes custom filters)\n selectedOntologyConfig: OntologyTypeConfig \| null = null;\n\n // Available options for dropdowns from library\n columnTypes: ColumnTypeConfig[] = COLUMN_TYPE_CONFIGS;\n ontologyTypes: OntologyTypeConfig[] = ONTOLOGY_TYPE_CONFIGS;\n\n // Template selection properties\n templateFilter = '';\n selectedTemplateId: number \| string = '';\n selectedTemplate: MetadataColumnTemplate \| null = null;\n templates: MetadataColumnTemplate[] = [];\n isLoadingTemplates = false;\n\n // Pagination\n currentTemplatePage = 1;\n templatePageSize = 5;\n totalTemplates = 0;\n totalTemplatePages = 0;\n Math = Math;\n\n // Official SDRF column configurations from library\n officialSdrfColumns: SdrfColumnConfig[] = OFFICIAL_SDRF_COLUMNS;\n\n // Column selection mode\n showOfficialColumns = false;\n selectedOfficialColumn: SdrfColumnConfig \| null = null;\n availableOfficialColumns: SdrfColumnConfig[] = [];\n\n // Template swapping for existing columns\n showTemplateSwap = false;\n showCreateCustomTemplate = false;\n\n constructor(\n private fb: FormBuilder,\n private activeModal: NgbActiveModal,\n private modalService: NgbModal,\n private metadataColumnTemplateService: MetadataColumnTemplateService,\n private sdrfSyntaxService: SdrfSyntaxService\n ) {\n this.editForm = this.fb.group({\n name: ['', [Validators.required, Validators.minLength(1)]],\n type: [ColumnType.CHARACTERISTICS, Validators.required],\n value: [''],\n ontologyType: ['0'],\n enableTypeahead: [false],\n mandatory: [false],\n hidden: [false],\n readonly: [false],\n notApplicable: [false]\n });\n }\n\n ngOnInit() {\n // Always disable name and type fields since they're managed through templates\n this.editForm.get('name')?.disable();\n this.editForm.get('type')?.disable();\n\n if (this.column && this.isEdit) {\n this.populateForm();\n }\n\n if (!this.isEdit) {\n this.loadColumnTemplates();\n }\n }\n\n private populateForm() {\n if (this.column) {\n const ontologyTypeIndex = this.column.ontologyType\n ? this.ontologyTypes.findIndex(o => o.value === this.column!.ontologyType)\n : 0;\n\n this.editForm.patchValue({\n name: this.column.name,\n type: this.getCorrectedColumnType(this.column.name, this.column.type),\n value: this.column.value \|\| '',\n ontologyType: ontologyTypeIndex >= 0 ? ontologyTypeIndex.toString() : '0',\n enableTypeahead: this.column.enableTypeahead \|\| false,\n mandatory: this.column.mandatory \|\| false,\n hidden: this.column.hidden \|\| false,\n readonly: this.column.readonly \|\| false,\n notApplicable: this.column.notApplicable \|\| false\n });\n }\n }\n\n onSubmit() {\n // For new columns, require either template or official column selection\n if (!this.isEdit && !this.selectedTemplate && !this.selectedOfficialColumn) {\n alert('Please select from official SDRF columns or choose an existing template before proceeding.');\n return;\n }\n\n if (this.editForm.valid) {\n this.isLoading.set(true);\n const formValue = this.editForm.getRawValue();\n\n const ontologyTypeIndex = parseInt(formValue.ontologyType);\n const ontologyTypeValue = ontologyTypeIndex > 0 ? this.ontologyTypes[ontologyTypeIndex]?.value as OntologyType : undefined;\n\n const columnData: Partial<MetadataColumn> = {\n name: formValue.name,\n type: formValue.type,\n value: formValue.value \|\| '',\n ontologyType: ontologyTypeValue,\n enableTypeahead: formValue.enableTypeahead \|\| false,\n mandatory: formValue.mandatory \|\| false,\n hidden: formValue.hidden \|\| false,\n readonly: formValue.readonly \|\| false,\n notApplicable: formValue.notApplicable \|\| false\n };\n\n this.columnSaved.emit(columnData);\n } else {\n this.markFormGroupTouched();\n }\n }\n\n private markFormGroupTouched() {\n Object.keys(this.editForm.controls).forEach(key => {\n const control = this.editForm.get(key);\n control?.markAsTouched();\n });\n }\n\n onCancel() {\n this.activeModal.dismiss();\n }\n\n onClose() {\n this.isLoading.set(false);\n this.activeModal.close();\n }\n\n getFieldError(fieldName: string): string {\n const control = this.editForm.get(fieldName);\n if (control?.errors && control.touched) {\n if (control.errors['required']) return `${fieldName} is required`;\n if (control.errors['minlength']) return `${fieldName} must be at least ${control.errors['minlength'].requiredLength} characters`;\n }\n return '';\n }\n\n get title(): string {\n return this.isEdit ? 'Edit Column' : 'Add Column';\n }\n\n get hasOntologyType(): boolean {\n const ontologyTypeIndex = this.editForm.get('ontologyType')?.value;\n return !!(ontologyTypeIndex && ontologyTypeIndex !== '0');\n }\n\n get hasTypeaheadEnabled(): boolean {\n return this.hasOntologyType && this.editForm.get('enableTypeahead')?.value === true;\n }\n\n openValueEditModal(): void {\n // Get custom filters from selected ontology type or template\n let customFilters = this.selectedTemplate?.customOntologyFilters;\n let ontologyType = '';\n\n // If in advanced mode and an ontology type is selected, use its custom filters\n if (this.showAdvancedMode() && this.selectedOntologyConfig) {\n ontologyType = this.selectedOntologyConfig.value;\n if (this.selectedOntologyConfig.customFilters) {\n customFilters = this.selectedOntologyConfig.customFilters;\n }\n }\n\n const config: MetadataValueEditConfig = {\n columnId: this.column?.id,\n columnName: this.editForm.get('name')?.value \|\| 'Column',\n columnType: this.editForm.get('type')?.value \|\| '',\n ontologyType: ontologyType,\n enableTypeahead: this.editForm.get('enableTypeahead')?.value \|\| false,\n currentValue: this.editForm.get('value')?.value \|\| '',\n context: this.isEdit ? 'table' : 'template',\n templateId: this.selectedTemplate?.id \|\| this.templateId \|\| undefined,\n customOntologyFilters: customFilters\n };\n\n const modalRef = this.modalService.open(MetadataValueEditModal, {\n size: 'lg',\n backdrop: 'static'\n });\n\n modalRef.componentInstance.config = config;\n modalRef.componentInstance.valueSaved.subscribe((result: string \| { value: string; sampleIndices: number[] }) => {\n // Extract the actual value from the result\n const newValue = typeof result === 'string' ? result : result.value;\n this.editForm.get('value')?.setValue(newValue);\n this.editForm.get('value')?.markAsTouched();\n modalRef.componentInstance.onClose();\n });\n }\n\n // Template selection methods\n private loadColumnTemplates(): void {\n this.isLoadingTemplates = true;\n const offset = (this.currentTemplatePage - 1) this.templatePageSize;\n const params: MetadataColumnTemplateQueryParams = {\n limit: this.templatePageSize,\n offset: offset,\n isActive: true,\n search: this.templateFilter \|\| undefined\n };\n\n this.metadataColumnTemplateService.getMetadataColumnTemplates(params).subscribe({\n next: (response: PaginatedResponse<MetadataColumnTemplate>) => {\n this.templates = response.results \|\| [];\n this.totalTemplates = response.count \|\| 0;\n this.totalTemplatePages = Math.ceil(this.totalTemplates / this.templatePageSize);\n this.isLoadingTemplates = false;\n },\n error: (error: any) => {\n console.error('Error loading column templates:', error);\n this.isLoadingTemplates = false;\n }\n });\n }\n\n onTemplateFilterChange(): void {\n this.currentTemplatePage = 1;\n this.loadColumnTemplates();\n }\n\n clearTemplateFilter(): void {\n this.templateFilter = '';\n this.currentTemplatePage = 1;\n this.loadColumnTemplates();\n }\n\n onTemplatePageChange(page: number): void {\n this.currentTemplatePage = page;\n this.loadColumnTemplates();\n }\n\n onTemplateSelectionChange(): void {\n if (this.selectedTemplateId) {\n const template = this.templates.find(t => t.id === Number(this.selectedTemplateId));\n if (template) {\n this.selectedTemplate = template;\n\n // Enable controls to update values, then disable again\n this.editForm.get('name')?.enable();\n this.editForm.get('type')?.enable();\n\n // Auto-fill form with template data\n const ontologyTypeIndex = template.ontologyType\n ? this.ontologyTypes.findIndex(o => o.value === template.ontologyType)\n : 0;\n\n this.editForm.patchValue({\n name: template.columnName,\n type: template.columnType,\n value: template.defaultValue \|\| '',\n ontologyType: ontologyTypeIndex >= 0 ? ontologyTypeIndex.toString() : '0',\n enableTypeahead: template.enableTypeahead \|\| false,\n mandatory: false,\n hidden: false,\n readonly: false,\n notApplicable: false\n });\n\n // Disable controls again\n this.editForm.get('name')?.disable();\n this.editForm.get('type')?.disable();\n\n // Mark form as touched to trigger validation display\n Object.keys(this.editForm.controls).forEach(key => {\n this.editForm.get(key)?.markAsTouched();\n });\n }\n } else {\n this.clearTemplate();\n }\n }\n\n clearTemplate(): void {\n this.selectedTemplate = null;\n this.selectedTemplateId = '';\n\n // Enable controls to reset values, then disable again\n this.editForm.get('name')?.enable();\n this.editForm.get('type')?.enable();\n\n // Reset form to default values\n this.editForm.reset({\n name: '',\n type: ColumnType.CHARACTERISTICS,\n value: '',\n ontologyType: '0',\n enableTypeahead: false,\n mandatory: false,\n hidden: false,\n readonly: false,\n notApplicable: false\n });\n\n // Disable controls again\n this.editForm.get('name')?.disable();\n this.editForm.get('type')?.disable();\n }\n\n getOntologyTypeLabel(ontologyType: string): string {\n const ontology = this.ontologyTypes.find(o => o.value === ontologyType);\n return ontology ? ontology.label : ontologyType;\n }\n\n // Official column selection methods\n toggleOfficialColumns(): void {\n this.showOfficialColumns = !this.showOfficialColumns;\n if (this.showOfficialColumns) {\n this.filterOfficialColumns();\n }\n }\n\n selectOfficialColumn(column: SdrfColumnConfig): void {\n this.selectedOfficialColumn = column;\n\n // Enable controls to update values, then disable again\n this.editForm.get('name')?.enable();\n this.editForm.get('type')?.enable();\n\n const ontologyTypeValue = this.getDefaultOntologyTypeForColumn(column.name);\n const ontologyTypeIndex = ontologyTypeValue\n ? this.ontologyTypes.findIndex(o => o.value === ontologyTypeValue)\n : 0;\n\n this.editForm.patchValue({\n name: column.name,\n type: column.type,\n value: '',\n ontologyType: ontologyTypeIndex >= 0 ? ontologyTypeIndex.toString() : '0',\n enableTypeahead: this.shouldEnableTypeaheadForColumn(column.name),\n mandatory: this.isColumnMandatory(column.name),\n hidden: false,\n readonly: false,\n notApplicable: false\n });\n\n // Disable controls again\n this.editForm.get('name')?.disable();\n this.editForm.get('type')?.disable();\n\n // Mark form as touched\n Object.keys(this.editForm.controls).forEach(key => {\n this.editForm.get(key)?.markAsTouched();\n });\n\n this.showOfficialColumns = false;\n }\n\n private filterOfficialColumns(): void {\n // Filter out columns that already have templates with the same name\n this.availableOfficialColumns = this.officialSdrfColumns.filter(officialCol => {\n return !this.templates.some(template =>\n template.columnName.toLowerCase() === officialCol.name.toLowerCase()\n );\n });\n }\n\n private getDefaultOntologyTypeForColumn(columnName: string): string {\n const lowerName = columnName.toLowerCase();\n\n // Based on backend configure_ontology_options method - use exact matches\n switch (lowerName) {\n case 'characteristics[organism]':\n return 'species';\n case 'characteristics[disease]':\n return 'human_disease';\n case 'characteristics[organism part]':\n return 'tissue';\n case 'characteristics[cell type]':\n return 'cell_ontology';\n case 'comment[instrument]':\n return 'ms_unique_vocabularies';\n case 'comment[modification parameters]':\n return 'unimod';\n case 'comment[ms2 analyzer type]':\n return 'ms_unique_vocabularies';\n case 'comment[cleavage agent details]':\n return 'ms_unique_vocabularies';\n case 'characteristics[ancestry category]':\n return 'ms_unique_vocabularies';\n case 'characteristics[sex]':\n return 'ms_unique_vocabularies';\n case 'characteristics[developmental stage]':\n return 'ms_unique_vocabularies';\n case 'comment[label]':\n return 'ms_unique_vocabularies';\n default:\n return '';\n }\n }\n\n private shouldEnableTypeaheadForColumn(columnName: string): boolean {\n const ontologyType = this.getDefaultOntologyTypeForColumn(columnName);\n return ontologyType.length > 0;\n }\n\n private isColumnMandatory(columnName: string): boolean {\n const lowerName = columnName.toLowerCase();\n\n switch (lowerName) {\n case 'source name':\n case 'characteristics[organism]':\n case 'characteristics[disease]':\n case 'characteristics[organism part]':\n case 'characteristics[cell type]':\n case 'assay name':\n case 'comment[fraction identifier]':\n case 'comment[label]':\n case 'comment[data file]':\n case 'comment[instrument]':\n case 'comment[technical replicate]':\n case 'characteristics[biological replicate]':\n return true;\n default:\n return false;\n }\n }\n\n\n // Template swapping methods\n showTemplateSwapOptions(): void {\n if (!this.isEdit) return;\n\n this.showTemplateSwap = true;\n this.loadColumnTemplates();\n }\n\n swapToTemplate(template: MetadataColumnTemplate): void {\n this.selectedTemplate = template;\n this.selectedTemplateId = template.id;\n\n // Update form with template data, preserving current value\n const currentValue = this.editForm.get('value')?.value \|\| '';\n\n // Enable controls to update values, then disable again\n this.editForm.get('name')?.enable();\n this.editForm.get('type')?.enable();\n\n const ontologyTypeIndex = template.ontologyType\n ? this.ontologyTypes.findIndex(o => o.value === template.ontologyType)\n : 0;\n\n this.editForm.patchValue({\n name: template.columnName,\n type: template.columnType,\n value: currentValue,\n ontologyType: ontologyTypeIndex >= 0 ? ontologyTypeIndex.toString() : '0',\n enableTypeahead: template.enableTypeahead \|\| false,\n mandatory: this.editForm.get('mandatory')?.value \|\| false,\n hidden: this.editForm.get('hidden')?.value \|\| false,\n readonly: this.editForm.get('readonly')?.value \|\| false,\n notApplicable: this.editForm.get('notApplicable')?.value \|\| false\n });\n\n // Disable controls again\n this.editForm.get('name')?.disable();\n this.editForm.get('type')?.disable();\n\n // Mark form as touched\n Object.keys(this.editForm.controls).forEach(key => {\n this.editForm.get(key)?.markAsTouched();\n });\n\n this.showTemplateSwap = false;\n }\n\n showCreateCustomTemplateOption(): void {\n this.showCreateCustomTemplate = true;\n }\n\n createCustomTemplate(): void {\n // This would open a new modal to create a custom template\n // For now, we'll just enable manual editing\n this.editForm.get('name')?.enable();\n this.showCreateCustomTemplate = false;\n\n // Show info message\n alert('Custom template creation would open a new dialog. For now, you can manually edit the column name.');\n }\n\n cancelTemplateSwap(): void {\n this.showTemplateSwap = false;\n this.showCreateCustomTemplate = false;\n }\n\n // Toggle advanced mode\n toggleAdvancedMode(): void {\n this.showAdvancedMode.set(!this.showAdvancedMode());\n\n // Reset ontology type when disabling advanced mode\n if (!this.showAdvancedMode()) {\n this.editForm.patchValue({\n ontologyType: '0',\n enableTypeahead: false\n });\n this.selectedOntologyConfig = null;\n }\n }\n\n // Handle ontology type selection change\n onOntologyTypeChange(event: Event): void {\n const selectElement = event.target as HTMLSelectElement;\n const selectedIndex = parseInt(selectElement.value);\n this.selectedOntologyConfig = this.ontologyTypes[selectedIndex] \|\| null;\n }\n\n private getCorrectedColumnType(columnName: string, columnType: string): string {\n const syntaxType = this.sdrfSyntaxService.detectSpecialSyntax(columnName, columnType);\n if (syntaxType) {\n // Return a specific type based on SDRF syntax detection\n switch (syntaxType) {\n case 'age':\n return 'characteristics[age]';\n case 'modification':\n return 'comment[modification parameters]';\n case 'cleavage':\n return 'comment[cleavage agent details]';\n case 'spiked_compound':\n return 'characteristics[spiked compound]';\n default:\n return columnType;\n }\n }\n return columnType;\n }\n}\n","<div class=\"modal-header\">\n <h4 class=\"modal-title\">\n <i class=\"bi bi-columns-gap me-2\"></i>{{ title }}\n </h4>\n <button type=\"button\" class=\"btn-close\" (click)=\"onCancel()\"></button>\n</div>\n\n<div class=\"modal-body\">\n <form [formGroup]=\"editForm\" (ngSubmit)=\"onSubmit()\">\n <div class=\"row\">\n <!-- Selection Required Notice for New Columns -->\n @if (!isEdit) {\n <div class=\"col-12 mb-3\">\n <div class=\"alert alert-warning\">\n <h6 class=\"alert-heading\">\n <i class=\"bi bi-exclamation-triangle me-2\"></i>Column Selection Required\n </h6>\n <p class=\"mb-0\">\n You must select from official SDRF columns or existing templates to ensure data compliance and consistency.\n </p>\n </div>\n </div>\n }\n\n <!-- Official SDRF Columns -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-file-earmark-check me-2\"></i>Official SDRF Columns\n <small class=\"text-muted ms-2\">\n @if (!isEdit) {\n (Step 1: Select from standardized SDRF-Proteomics column names)\n } @else {\n (Recommended - select from standardized SDRF-Proteomics column names)\n }\n </small>\n </h6>\n </div>\n\n @if (!isEdit) {\n <div class=\"col-12 mb-3\">\n @if (!showOfficialColumns) {\n <button\n type=\"button\"\n class=\"btn btn-primary mb-3\"\n (click)=\"toggleOfficialColumns()\">\n <i class=\"bi bi-list-ul me-2\"></i>\n Select from Official SDRF Columns\n </button>\n } @else {\n <button\n type=\"button\"\n class=\"btn btn-outline-secondary mb-3\"\n (click)=\"toggleOfficialColumns()\">\n <i class=\"bi bi-x me-2\"></i>\n Hide Official Columns\n </button>\n }\n </div>\n } @else {\n <div class=\"col-12 mb-3\">\n <button\n type=\"button\"\n class=\"btn btn-outline-info mb-3\"\n (click)=\"toggleOfficialColumns()\">\n <i class=\"bi bi-list-ul me-2\"></i>\n {{ showOfficialColumns ? 'Hide' : 'Show' }} Official Column Names\n </button>\n </div>\n }\n\n @if (showOfficialColumns) {\n <div class=\"col-12 mb-3\">\n <div class=\"border rounded p-3\">\n <p class=\"mb-3 text-muted\">\n <i class=\"bi bi-info-circle me-2\"></i>\n Select from official SDRF-Proteomics column names. Only columns without existing templates are shown.\n </p>\n\n @if (availableOfficialColumns.length === 0) {\n <div class=\"alert alert-warning\">\n <i class=\"bi bi-exclamation-triangle me-2\"></i>\n All official SDRF columns already have templates created.\n </div>\n } @else {\n <div class=\"row\">\n @for (column of availableOfficialColumns; track column.name) {\n <div class=\"col-md-6 mb-2\">\n <div class=\"card h-100 cursor-pointer border-info\"\n (click)=\"selectOfficialColumn(column)\"\n [class.border-primary]=\"selectedOfficialColumn?.name === column.name\">\n <div class=\"card-body py-2\">\n <h6 class=\"card-title mb-1 font-monospace\">\n {{ column.name }}\n </h6>\n <p class=\"card-text small mb-1\">\n <span class=\"badge\"\n [class]=\"column.type === 'characteristics' ? 'bg-primary' :\n column.type === 'comment' ? 'bg-success' :\n column.type === 'factor_value' ? 'bg-warning' : 'bg-secondary'\">\n {{ column.type }}\n </span>\n </p>\n <p class=\"card-text small mb-0\">{{ column.description }}</p>\n </div>\n </div>\n </div>\n }\n </div>\n }\n </div>\n </div>\n }\n\n <!-- Template Swapping for Edit Mode -->\n @if (isEdit && showTemplateSwap) {\n <div class=\"col-12 mb-3\">\n <div class=\"alert alert-info\">\n <h6 class=\"alert-heading\">\n <i class=\"bi bi-arrow-left-right me-2\"></i>Swap to Different Template\n </h6>\n <p class=\"mb-3\">\n Choose a different template to change the column name and settings. Your current value will be preserved.\n </p>\n\n <div class=\"mb-3\">\n <input\n type=\"text\"\n class=\"form-control mb-2\"\n placeholder=\"Search templates...\"\n [(ngModel)]=\"templateFilter\"\n [ngModelOptions]=\"{standalone: true}\"\n (input)=\"onTemplateFilterChange()\">\n\n <select\n class=\"form-select mb-3\"\n size=\"4\"\n [disabled]=\"isLoadingTemplates\">\n @if (isLoadingTemplates) {\n <option value=\"\" disabled>Loading templates...</option>\n } @else {\n @for (template of templates; track template.id) {\n <option\n [value]=\"template.id\"\n (click)=\"swapToTemplate(template)\"\n style=\"cursor: pointer;\">\n {{ template.columnName }} - {{ template.columnType }}@if (template.ontologyType) { ({{ getOntologyTypeLabel(template.ontologyType) }})}\n </option>\n }\n }\n </select>\n </div>\n\n <div class=\"d-flex justify-content-between\">\n <button\n type=\"button\"\n class=\"btn btn-success\"\n (click)=\"showCreateCustomTemplateOption()\">\n <i class=\"bi bi-plus-circle me-1\"></i>Create Custom Template\n </button>\n <button\n type=\"button\"\n class=\"btn btn-secondary\"\n (click)=\"cancelTemplateSwap()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n </div>\n </div>\n </div>\n }\n\n <!-- Custom Template Creation Option -->\n @if (isEdit && showCreateCustomTemplate) {\n <div class=\"col-12 mb-3\">\n <div class=\"alert alert-warning\">\n <h6 class=\"alert-heading\">\n <i class=\"bi bi-plus-circle me-2\"></i>Create Custom Template\n </h6>\n <p class=\"mb-3\">\n This will create a new custom template with your desired column name and settings.\n </p>\n\n <div class=\"d-flex justify-content-between\">\n <button\n type=\"button\"\n class=\"btn btn-warning\"\n (click)=\"createCustomTemplate()\">\n <i class=\"bi bi-gear me-1\"></i>Create & Apply Template\n </button>\n <button\n type=\"button\"\n class=\"btn btn-secondary\"\n (click)=\"cancelTemplateSwap()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n </div>\n </div>\n </div>\n }\n\n <!-- Template Selection -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-file-earmark-text me-2\"></i>Template Selection\n <small class=\"text-muted ms-2\">\n @if (!isEdit) {\n (Step 2: Or select from existing templates)\n } @else {\n (Optional - select a template to auto-fill column settings)\n }\n </small>\n </h6>\n </div>\n\n <div class=\"col-12 mb-3\">\n <div class=\"input-group mb-3\">\n <span class=\"input-group-text\">\n <i class=\"bi bi-search\"></i>\n </span>\n <input \n type=\"text\" \n class=\"form-control\" \n placeholder=\"Search column templates...\"\n [(ngModel)]=\"templateFilter\"\n [ngModelOptions]=\"{standalone: true}\"\n (input)=\"onTemplateFilterChange()\">\n @if (templateFilter) {\n <button class=\"btn btn-outline-secondary\" type=\"button\" (click)=\"clearTemplateFilter()\">\n <i class=\"bi bi-x\"></i>\n </button>\n }\n </div>\n\n <select \n class=\"form-select mb-3\"\n size=\"5\"\n [(ngModel)]=\"selectedTemplateId\"\n [ngModelOptions]=\"{standalone: true}\"\n (change)=\"onTemplateSelectionChange()\"\n [disabled]=\"isLoadingTemplates\">\n <option value=\"\">No template selected</option>\n @if (isLoadingTemplates) {\n <option value=\"\" disabled>Loading templates...</option>\n } @else {\n @for (template of templates; track template.id) {\n <option [value]=\"template.id\">\n {{ template.columnName }} - {{ template.columnType }}@if (template.ontologyType) { ({{ getOntologyTypeLabel(template.ontologyType) }})}\n </option>\n }\n }\n </select>\n\n @if (totalTemplatePages > 1) {\n <div class=\"d-flex justify-content-between align-items-center\">\n <small class=\"text-muted\">\n Showing {{ (currentTemplatePage - 1) * templatePageSize + 1 }}-{{ Math.min(currentTemplatePage * templatePageSize, totalTemplates) }}\n of {{ totalTemplates }}\n </small>\n <ngb-pagination\n [collectionSize]=\"totalTemplates\"\n [page]=\"currentTemplatePage\"\n [pageSize]=\"templatePageSize\"\n [maxSize]=\"3\"\n [boundaryLinks]=\"true\"\n [rotate]=\"true\"\n (pageChange)=\"onTemplatePageChange($event)\"\n class=\"pagination-sm mb-0\">\n </ngb-pagination>\n </div>\n }\n\n @if (selectedTemplate) {\n <div class=\"alert alert-info mt-3\">\n <i class=\"bi bi-info-circle me-2\"></i>\n Template \"{{ selectedTemplate.name }}\" selected. Settings will be applied automatically.\n <button type=\"button\" class=\"btn btn-sm btn-outline-info float-end\" (click)=\"clearTemplate()\">\n Clear Selection\n </button>\n </div>\n }\n </div>\n\n <!-- Manual Entry -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-pencil me-2\"></i>Column Details\n @if (selectedTemplate) {\n <small class=\"text-muted ms-2\">(Auto-filled from template - you can modify as needed)</small>\n }\n </h6>\n </div>\n \n <div class=\"col-12 mb-3\">\n <label for=\"columnName\" class=\"form-label\">\n Column Name \n <span class=\"text-muted ms-2\">\n <i class=\"bi bi-info-circle\"></i>\n Column names are managed through templates\n </span>\n </label>\n <div class=\"input-group\">\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"columnName\"\n formControlName=\"name\"\n [class.is-invalid]=\"editForm.get('name')?.invalid && editForm.get('name')?.touched\"\n readonly\n placeholder=\"Select from official columns or templates below\">\n @if (isEdit) {\n <button\n type=\"button\"\n class=\"btn btn-outline-secondary\"\n (click)=\"showTemplateSwapOptions()\"\n title=\"Change to different template\">\n <i class=\"bi bi-arrow-left-right\"></i> Swap Template\n </button>\n }\n </div>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>\n @if (isEdit) {\n To change the column name, swap to a different template or create a new custom template.\n } @else {\n Select from official SDRF columns or existing templates below to ensure compliance.\n }\n </div>\n </div>\n\n <div class=\"col-md-6 mb-3\">\n <label for=\"columnType\" class=\"form-label\">\n Column Type \n <span class=\"text-muted ms-2\">\n <i class=\"bi bi-info-circle\"></i>\n Managed through templates\n </span>\n </label>\n <select\n class=\"form-select\"\n id=\"columnType\"\n formControlName=\"type\"\n [class.is-invalid]=\"editForm.get('type')?.invalid && editForm.get('type')?.touched\">\n @for (type of columnTypes; track type.value) {\n <option [value]=\"type.value\">{{ type.label }}</option>\n }\n </select>\n </div>\n\n <!-- Advanced Mode Toggle -->\n <div class=\"col-12 mb-3\">\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"advancedMode\"\n [checked]=\"showAdvancedMode()\"\n (change)=\"toggleAdvancedMode()\">\n <label class=\"form-check-label\" for=\"advancedMode\">\n <i class=\"bi bi-gear me-1\"></i>Advanced Mode\n </label>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>\n Show advanced options for ontology configuration and column settings\n </div>\n </div>\n </div>\n\n @if (showAdvancedMode()) {\n <div class=\"col-md-6 mb-3\">\n <label for=\"ontologyType\" class=\"form-label\">\n Ontology Type\n <span class=\"badge bg-warning ms-2\">\n <i class=\"bi bi-exclamation-triangle me-1\"></i>Advanced\n </span>\n </label>\n <select\n class=\"form-select\"\n id=\"ontologyType\"\n formControlName=\"ontologyType\"\n (change)=\"onOntologyTypeChange($event)\">\n @for (ontology of ontologyTypes; track $index) {\n <option [value]=\"$index\">{{ ontology.label }}</option>\n }\n </select>\n\n @if (hasOntologyType) {\n <div class=\"form-text mt-2\">\n <i class=\"bi bi-info-circle me-1\"></i>\n Custom ontology filters will be applied based on the selected type\n </div>\n }\n </div>\n\n @if (hasOntologyType) {\n <div class=\"col-12 mb-3\">\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"enableTypeahead\"\n formControlName=\"enableTypeahead\">\n <label class=\"form-check-label\" for=\"enableTypeahead\">\n <i class=\"bi bi-search me-1\"></i>Enable Typeahead Autocomplete\n </label>\n <div class=\"form-text\">\n <i class=\"bi bi-info-circle me-1\"></i>\n Enable autocomplete suggestions from {{ selectedOntologyConfig?.label \|\| 'selected' }} ontology when editing values\n </div>\n </div>\n </div>\n }\n\n <!-- Column Options - Advanced Mode Only -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-sliders me-2\"></i>Column Options\n <span class=\"badge bg-warning ms-2\">\n <i class=\"bi bi-exclamation-triangle me-1\"></i>Advanced\n </span>\n </h6>\n </div>\n\n <div class=\"col-12 mb-3\">\n <div class=\"row\">\n <div class=\"col-md-3\">\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"mandatory\"\n formControlName=\"mandatory\">\n <label class=\"form-check-label\" for=\"mandatory\">\n <i class=\"bi bi-exclamation-circle me-1\"></i>Mandatory\n </label>\n </div>\n </div>\n <div class=\"col-md-3\">\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"hidden\"\n formControlName=\"hidden\">\n <label class=\"form-check-label\" for=\"hidden\">\n <i class=\"bi bi-eye-slash me-1\"></i>Hidden\n </label>\n </div>\n </div>\n <div class=\"col-md-3\">\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"readonly\"\n formControlName=\"readonly\">\n <label class=\"form-check-label\" for=\"readonly\">\n <i class=\"bi bi-lock me-1\"></i>Read Only\n </label>\n </div>\n </div>\n <div class=\"col-md-3\">\n <div class=\"form-check form-switch\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"notApplicable\"\n formControlName=\"notApplicable\">\n <label class=\"form-check-label\" for=\"notApplicable\">\n <i class=\"bi bi-dash-circle me-1\"></i>N/A\n </label>\n </div>\n </div>\n </div>\n </div>\n }\n\n <div class=\"col-12 mb-3\">\n <label for=\"defaultValue\" class=\"form-label\">\n Default Value\n @if (hasTypeaheadEnabled) {\n <span class=\"badge bg-success ms-2\">\n <i class=\"bi bi-search me-1\"></i>Typeahead Enabled\n </span>\n }\n </label>\n \n <div class=\"input-group\">\n <input \n type=\"text\" \n class=\"form-control\"\n id=\"defaultValue\"\n formControlName=\"value\"\n placeholder=\"Enter default value\"\n readonly>\n <button \n type=\"button\" \n class=\"btn btn-outline-primary\"\n (click)=\"openValueEditModal()\"\n title=\"Open advanced value editor\">\n <i class=\"bi bi-pencil me-1\"></i>Edit\n </button>\n </div>\n \n <div class=\"form-text\">\n @if (hasTypeaheadEnabled) {\n <i class=\"bi bi-info-circle me-1\"></i>\n Click \"Edit\" to use autocomplete suggestions from {{ selectedOntologyConfig?.label \|\| 'selected' }} ontology\n } @else if (hasOntologyType) {\n <i class=\"bi bi-info-circle me-1\"></i>\n Click \"Edit\" to set default value. Enable typeahead in Advanced Mode for autocomplete suggestions.\n } @else if (showAdvancedMode()) {\n <i class=\"bi bi-info-circle me-1\"></i>\n Click \"Edit\" to set the default value (select an ontology type above for smart suggestions)\n } @else {\n <i class=\"bi bi-info-circle me-1\"></i>\n Click \"Edit\" to set the default value (enable Advanced Mode for ontology autocomplete)\n }\n </div>\n </div>\n\n </div>\n </form>\n</div>\n\n<div class=\"modal-footer\">\n <button type=\"button\" class=\"btn btn-outline-secondary\" (click)=\"onCancel()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n <button \n type=\"button\" \n class=\"btn btn-primary\" \n (click)=\"onSubmit()\"\n [disabled]=\"editForm.invalid \|\| isLoading()\">\n @if (isLoading()) {\n <span class=\"spinner-border spinner-border-sm me-2\"></span>\n }\n <i class=\"bi bi-check-circle me-1\"></i>\n {{ isEdit ? 'Update' : 'Add' }} Column\n </button>\n</div>\n","import { Component, Input, Output, EventEmitter, OnInit, signal, computed } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbActiveModal, NgbModule, NgbModal } from '@ng-bootstrap/ng-bootstrap';\nimport { DragDropModule, CdkDragDrop, moveItemInArray } from '@angular/cdk/drag-drop';\nimport { LabGroup, ResourceVisibility } from '@noatgnu/cupcake-core';\nimport { MetadataTableTemplate, MetadataColumn } from '../../../models';\nimport { MetadataTableTemplateService } from '../../../services/metadata-table-template';\nimport { ColumnEditModal } from '../column-edit-modal/column-edit-modal';\nimport { ToastService } from '@noatgnu/cupcake-core';\n\n@Component({\n selector: 'ccv-metadata-table-template-edit-modal',\n imports: [CommonModule, ReactiveFormsModule, NgbModule, DragDropModule],\n templateUrl: './metadata-table-template-edit-modal.html',\n styleUrl: './metadata-table-template-edit-modal.scss'\n})\nexport class MetadataTableTemplateEditModal implements OnInit {\n @Input() template: MetadataTableTemplate \| null = null;\n @Input() labGroups: LabGroup[] = [];\n @Input() isEdit = false;\n @Output() templateSaved = new EventEmitter<Partial<MetadataTableTemplate>>();\n\n editForm: FormGroup;\n isLoading = signal(false);\n \n // Column management\n _templateColumns = signal<MetadataColumn[]>([]);\n templateColumns = computed(() => {\n // Sort columns by position, then by name+type for grouping same columns together\n return this._templateColumns().sort((a, b) => {\n if (a.columnPosition !== b.columnPosition) {\n return (a.columnPosition \|\| 0) - (b.columnPosition \|\| 0);\n }\n // Secondary sort: group columns with same name and type together\n const aKey = `${a.name}_${a.type}`;\n const bKey = `${b.name}_${b.type}`;\n return aKey.localeCompare(bKey);\n });\n });\n\n // Available options for dropdowns\n visibilityOptions = [\n { value: ResourceVisibility.PRIVATE, label: 'Private' },\n { value: ResourceVisibility.GROUP, label: 'Lab Group' },\n { value: ResourceVisibility.PUBLIC, label: 'Public' }\n ];\n\n constructor(\n private fb: FormBuilder,\n private activeModal: NgbActiveModal,\n private modalService: NgbModal,\n private metadataTableTemplateService: MetadataTableTemplateService,\n private toastService: ToastService\n ) {\n this.editForm = this.fb.group({\n name: ['', [Validators.required, Validators.minLength(3)]],\n description: [''],\n visibility: [ResourceVisibility.PRIVATE],\n isDefault: [false],\n labGroupId: [null]\n });\n }\n\n ngOnInit() {\n if (this.template && this.isEdit) {\n this.populateForm();\n }\n }\n\n private populateForm() {\n if (this.template) {\n const labGroupId = this.template.labGroup;\n \n this.editForm.patchValue({\n name: this.template.name,\n description: this.template.description \|\| '',\n visibility: this.template.visibility \|\| ResourceVisibility.PRIVATE,\n isDefault: this.template.isDefault \|\| false,\n labGroupId: labGroupId \|\| null\n });\n \n // Load existing columns if editing\n if (this.template.userColumns) {\n this._templateColumns.set([...this.template.userColumns]);\n }\n }\n }\n\n onSubmit() {\n if (this.editForm.valid) {\n this.isLoading.set(true);\n const formValue = this.editForm.value;\n \n // Clean up form data\n const templateData: Partial<MetadataTableTemplate> = {\n name: formValue.name,\n description: formValue.description \|\| '',\n visibility: formValue.visibility \|\| ResourceVisibility.PRIVATE,\n isDefault: formValue.isDefault \|\| false,\n labGroup: formValue.labGroupId \|\| null,\n // Include updated columns\n userColumns: this._templateColumns(),\n // Keep existing field mapping if editing\n ...(this.template && {\n fieldMaskMapping: this.template.fieldMaskMapping\n })\n };\n\n this.templateSaved.emit(templateData);\n } else {\n this.markFormGroupTouched();\n }\n }\n\n private markFormGroupTouched() {\n Object.keys(this.editForm.controls).forEach(key => {\n const control = this.editForm.get(key);\n control?.markAsTouched();\n });\n }\n\n onCancel() {\n this.activeModal.dismiss();\n }\n\n onClose() {\n this.isLoading.set(false);\n this.activeModal.close();\n }\n\n getFieldError(fieldName: string): string {\n const control = this.editForm.get(fieldName);\n if (control?.errors && control.touched) {\n if (control.errors['required']) return `${fieldName} is required`;\n if (control.errors['minlength']) return `${fieldName} must be at least ${control.errors['minlength'].requiredLength} characters`;\n }\n return '';\n }\n\n get title(): string {\n return this.isEdit ? 'Edit Table Template' : 'Create Table Template';\n }\n\n // Column Management Methods\n\n addColumn() {\n this.openColumnModal(null, false);\n }\n\n addColumnWithAutoReorder() {\n // Only available for existing templates\n if (!this.isEdit \|\| !this.template?.id) {\n this.toastService.error('Auto-reorder is only available for existing templates');\n return;\n }\n this.openColumnModal(null, false, true);\n }\n\n editColumn(column: MetadataColumn) {\n this.openColumnModal(column, true);\n }\n\n duplicateColumn(column: MetadataColumn) {\n const currentColumns = this._templateColumns();\n const newColumn: MetadataColumn = {\n ...column,\n id: this.generateTempId(), // Generate temporary ID for tracking\n name: `${column.name} (Copy)`,\n columnPosition: this.getNextPositionForSameType(column)\n };\n\n // Add the duplicated column right after columns with same name/type\n const updatedColumns = [...currentColumns, newColumn];\n this.normalizeColumnPositions(updatedColumns);\n this._templateColumns.set(updatedColumns);\n }\n\n removeColumn(column: MetadataColumn) {\n const confirmMessage = `Are you sure you want to remove the column \"${column.name}\"?`;\n \n if (confirm(confirmMessage)) {\n const currentColumns = this._templateColumns();\n const updatedColumns = currentColumns.filter(col => col.id !== column.id);\n this.normalizeColumnPositions(updatedColumns);\n this._templateColumns.set(updatedColumns);\n }\n }\n\n onColumnDrop(event: CdkDragDrop<MetadataColumn[]>) {\n // If dropped in the same position, no action needed\n if (event.previousIndex === event.currentIndex) {\n return;\n }\n\n const currentColumns = [...this._templateColumns()];\n \n // Move the item in the array\n moveItemInArray(currentColumns, event.previousIndex, event.currentIndex);\n \n // Normalize positions and ensure same name/type grouping\n this.normalizeColumnPositions(currentColumns);\n this.enforceGrouping(currentColumns);\n \n this._templateColumns.set(currentColumns);\n }\n\n private openColumnModal(column: MetadataColumn \| null, isEdit: boolean, useAutoReorder: boolean = false) {\n const modalRef = this.modalService.open(ColumnEditModal, {\n size: 'lg',\n backdrop: 'static',\n keyboard: false\n });\n\n modalRef.componentInstance.column = column;\n modalRef.componentInstance.templateId = this.template?.id \|\| null;\n modalRef.componentInstance.isEdit = isEdit;\n\n modalRef.componentInstance.columnSaved.subscribe((columnData: Partial<MetadataColumn>) => {\n if (useAutoReorder && this.template?.id) {\n this.handleColumnSaveWithAutoReorder(columnData);\n } else {\n this.handleColumnSave(columnData, column, isEdit);\n }\n modalRef.componentInstance.onClose();\n });\n }\n\n private handleColumnSave(columnData: Partial<MetadataColumn>, originalColumn: MetadataColumn \| null, isEdit: boolean) {\n const currentColumns = this._templateColumns();\n \n if (isEdit && originalColumn) {\n // Update existing column\n const updatedColumns = currentColumns.map(col => \n col.id === originalColumn.id \n ? { ...col, ...columnData }\n : col\n );\n \n // Check if name/type changed and needs regrouping\n if (columnData.name !== originalColumn.name \|\| columnData.type !== originalColumn.type) {\n this.enforceGrouping(updatedColumns);\n }\n \n this.normalizeColumnPositions(updatedColumns);\n this._templateColumns.set(updatedColumns);\n } else {\n // Add new column\n const newColumn: MetadataColumn = {\n ...columnData as MetadataColumn,\n id: this.generateTempId(),\n columnPosition: this.getNextPositionForNameType(columnData.name!, columnData.type!)\n };\n \n const updatedColumns = [...currentColumns, newColumn];\n this.enforceGrouping(updatedColumns);\n this.normalizeColumnPositions(updatedColumns);\n this._templateColumns.set(updatedColumns);\n }\n }\n\n private handleColumnSaveWithAutoReorder(columnData: Partial<MetadataColumn>): void {\n if (!this.template?.id) {\n this.toastService.error('Template ID not found');\n return;\n }\n\n this.isLoading.set(true);\n \n this.metadataTableTemplateService.addColumnWithAutoReorder(this.template.id, {\n columnData: columnData\n }).subscribe({\n next: (response: { message: string; column: any; reordered: boolean; schemaIdsUsed: number[] }) => {\n this.isLoading.set(false);\n \n // Refresh the template data by reloading it\n this.reloadTemplateColumns();\n \n // Show success message with reordering info\n let message = `Column \"${response.column.name}\" added successfully!`;\n if (response.reordered) {\n message += ` Columns reordered using ${response.schemaIdsUsed.length} schema(s).`;\n }\n \n this.toastService.success(message);\n },\n error: (error) => {\n this.isLoading.set(false);\n console.error('Error adding column with auto-reorder:', error);\n this.toastService.error('Failed to add column with auto-reorder');\n }\n });\n }\n\n private reloadTemplateColumns(): void {\n if (this.template?.id) {\n this.metadataTableTemplateService.getMetadataTableTemplate(this.template.id).subscribe({\n next: (updatedTemplate) => {\n this._templateColumns.set([...updatedTemplate.userColumns \|\| []]);\n },\n error: (error) => {\n console.error('Error reloading template columns:', error);\n }\n });\n }\n }\n\n private generateTempId(): number {\n // Generate a temporary negative ID for new columns\n const currentColumns = this._templateColumns();\n const minId = Math.min(0, ...currentColumns.map(col => col.id \|\| 0));\n return minId - 1;\n }\n\n private getNextPositionForSameType(column: MetadataColumn): number {\n const currentColumns = this._templateColumns();\n const sameNameTypeColumns = currentColumns.filter(col => \n col.name === column.name && col.type === column.type\n );\n \n if (sameNameTypeColumns.length === 0) {\n return currentColumns.length;\n }\n \n const maxPosition = Math.max(...sameNameTypeColumns.map(col => col.columnPosition \|\| 0));\n return maxPosition + 1;\n }\n\n private getNextPositionForNameType(name: string, type: string): number {\n const currentColumns = this._templateColumns();\n const sameNameTypeColumns = currentColumns.filter(col => \n col.name === name && col.type === type\n );\n \n if (sameNameTypeColumns.length === 0) {\n return currentColumns.length;\n }\n \n const maxPosition = Math.max(...sameNameTypeColumns.map(col => col.columnPosition \|\| 0));\n return maxPosition + 1;\n }\n\n private normalizeColumnPositions(columns: MetadataColumn[]) {\n columns.forEach((col, index) => {\n col.columnPosition = index;\n });\n }\n\n private enforceGrouping(columns: MetadataColumn[]) {\n // Group columns by name+type and ensure they are together\n const groups = new Map<string, MetadataColumn[]>();\n \n columns.forEach(col => {\n const key = `${col.name}_${col.type}`;\n if (!groups.has(key)) {\n groups.set(key, []);\n }\n groups.get(key)!.push(col);\n });\n \n // Rebuild array with proper grouping\n let position = 0;\n const regroupedColumns: MetadataColumn[] = [];\n \n for (const [key, groupColumns] of groups) {\n // Sort within group by original position to maintain relative order\n groupColumns.sort((a, b) => (a.columnPosition \|\| 0) - (b.columnPosition \|\| 0));\n \n groupColumns.forEach(col => {\n col.columnPosition = position++;\n regroupedColumns.push(col);\n });\n }\n \n // Replace original array contents\n columns.length = 0;\n columns.push(...regroupedColumns);\n }\n}\n","<div class=\"modal-header\">\n <h4 class=\"modal-title\">\n <i class=\"bi bi-file-earmark-text me-2\"></i>{{ title }}\n </h4>\n <button type=\"button\" class=\"btn-close\" (click)=\"onCancel()\"></button>\n</div>\n\n<div class=\"modal-body\">\n <form [formGroup]=\"editForm\" (ngSubmit)=\"onSubmit()\">\n <div class=\"row\">\n <!-- Basic Information -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-info-circle me-2\"></i>Basic Information\n </h6>\n </div>\n \n <div class=\"col-12 mb-3\">\n <label for=\"templateName\" class=\"form-label\">Template Name </label>\n <input \n type=\"text\" \n class=\"form-control\"\n id=\"templateName\"\n formControlName=\"name\"\n [class.is-invalid]=\"editForm.get('name')?.invalid && editForm.get('name')?.touched\"\n placeholder=\"Enter template name\">\n <div class=\"invalid-feedback\">\n {{ getFieldError('name') }}\n </div>\n </div>\n\n <div class=\"col-12 mb-3\">\n <label for=\"description\" class=\"form-label\">Description</label>\n <textarea \n class=\"form-control\" \n id=\"description\"\n formControlName=\"description\"\n rows=\"3\"\n placeholder=\"Optional description\"></textarea>\n </div>\n\n <!-- Configuration -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-gear me-2\"></i>Configuration\n </h6>\n </div>\n\n <div class=\"col-md-6 mb-3\">\n <label for=\"labGroup\" class=\"form-label\">Lab Group</label>\n <select \n class=\"form-select\"\n id=\"labGroup\"\n formControlName=\"labGroupId\">\n <option [ngValue]=\"null\">No Lab Group</option>\n @for (group of labGroups; track group.id) {\n <option [ngValue]=\"group.id\">{{ group.name }}</option>\n }\n </select>\n </div>\n\n <div class=\"col-12 mb-3\">\n <div class=\"row\">\n <div class=\"col-md-6\">\n <label for=\"visibility\" class=\"form-label\">Visibility</label>\n <select \n class=\"form-select\"\n id=\"visibility\"\n formControlName=\"visibility\">\n @for (option of visibilityOptions; track option.value) {\n <option [value]=\"option.value\">{{ option.label }}</option>\n }\n </select>\n </div>\n <div class=\"col-md-6\">\n <div class=\"form-check form-switch\">\n <input \n class=\"form-check-input\" \n type=\"checkbox\" \n id=\"isDefault\"\n formControlName=\"isDefault\">\n <label class=\"form-check-label\" for=\"isDefault\">\n <i class=\"bi bi-star me-1\"></i>Default Template\n </label>\n <small class=\"form-text text-muted d-block\">Use as default for new projects</small>\n </div>\n </div>\n </div>\n </div>\n\n <!-- Column Management -->\n <div class=\"col-12 mb-3\">\n <h6 class=\"text-muted border-bottom pb-2\">\n <i class=\"bi bi-columns-gap me-2\"></i>Template Columns\n <button type=\"button\" class=\"btn btn-sm btn-outline-primary ms-2\" (click)=\"addColumn()\">\n <i class=\"bi bi-plus me-1\"></i>Add Column\n </button>\n @if (isEdit && template?.id) {\n <button type=\"button\" class=\"btn btn-sm btn-success ms-2\" (click)=\"addColumnWithAutoReorder()\" \n [disabled]=\"isLoading()\"\n title=\"Add column with automatic schema-based reordering\">\n <i class=\"bi bi-plus-circle me-1\"></i>Add Column (Auto-Reorder)\n </button>\n }\n </h6>\n </div>\n\n <div class=\"col-12 mb-3\">\n @if (templateColumns().length > 0) {\n <div class=\"table-responsive\">\n <table class=\"table table-sm table-hover\">\n <thead class=\"table-light\">\n <tr>\n <th style=\"width: 40px;\"><i class=\"bi bi-arrows-move\"></i></th>\n <th>Position</th>\n <th>Column Name</th>\n <th>Type</th>\n <th>Default Value</th>\n <th>Options</th>\n <th style=\"width: 120px;\">Actions</th>\n </tr>\n </thead>\n <tbody cdkDropList (cdkDropListDropped)=\"onColumnDrop($event)\" [cdkDropListData]=\"_templateColumns()\">\n @for (column of _templateColumns(); track column.id; let i = $index) {\n <tr cdkDrag [cdkDragData]=\"column\" class=\"column-row\" [attr.data-column-id]=\"column.id\">\n <td class=\"text-center\">\n <i class=\"bi bi-grip-vertical drag-handle\" cdkDragHandle></i>\n </td>\n <td>\n <span class=\"badge bg-secondary\">{{ i + 1 }}</span>\n </td>\n <td>\n <strong>{{ column.name }}</strong>\n </td>\n <td>\n <span class=\"badge bg-info\">{{ column.type }}</span>\n </td>\n <td>\n <span class=\"text-muted\">{{ column.value \|\| '-' }}</span>\n </td>\n <td>\n <div class=\"d-flex gap-1\">\n @if (column.mandatory) {\n <span class=\"badge badge-pill bg-warning\" title=\"Mandatory\">\n <i class=\"bi bi-exclamation-circle\"></i>\n </span>\n }\n @if (column.hidden) {\n <span class=\"badge badge-pill bg-secondary\" title=\"Hidden\">\n <i class=\"bi bi-eye-slash\"></i>\n </span>\n }\n @if (column.readonly) {\n <span class=\"badge badge-pill bg-dark\" title=\"Read Only\">\n <i class=\"bi bi-lock\"></i>\n </span>\n }\n @if (column.ontologyType) {\n <span class=\"badge badge-pill bg-success\" title=\"Has Ontology\">\n <i class=\"bi bi-tags\"></i>\n </span>\n }\n </div>\n </td>\n <td>\n <div class=\"btn-group btn-group-sm\" role=\"group\">\n <button \n type=\"button\"\n class=\"btn btn-outline-primary\" \n (click)=\"editColumn(column)\"\n title=\"Edit column\">\n <i class=\"bi bi-pencil\"></i>\n </button>\n <button \n type=\"button\"\n class=\"btn btn-outline-info\" \n (click)=\"duplicateColumn(column)\"\n title=\"Duplicate column\">\n <i class=\"bi bi-copy\"></i>\n </button>\n <button \n type=\"button\"\n class=\"btn btn-outline-danger\" \n (click)=\"removeColumn(column)\"\n title=\"Remove column\">\n <i class=\"bi bi-trash\"></i>\n </button>\n </div>\n </td>\n </tr>\n }\n </tbody>\n </table>\n </div>\n } @else {\n <div class=\"text-center py-4 text-muted\">\n <i class=\"bi bi-columns-gap fs-1 mb-2\"></i>\n <p>No columns in this template yet.</p>\n <div class=\"d-flex gap-2 justify-content-center\">\n <button type=\"button\" class=\"btn btn-primary btn-sm\" (click)=\"addColumn()\">\n <i class=\"bi bi-plus me-1\"></i>Add First Column\n </button>\n @if (isEdit && template?.id) {\n <button type=\"button\" class=\"btn btn-success btn-sm\" (click)=\"addColumnWithAutoReorder()\" \n [disabled]=\"isLoading()\"\n title=\"Add column with automatic schema-based reordering\">\n <i class=\"bi bi-plus-circle me-1\"></i>Add with Auto-Reorder\n </button>\n }\n </div>\n </div>\n }\n </div>\n </div>\n </form>\n</div>\n\n<div class=\"modal-footer\">\n <button type=\"button\" class=\"btn btn-outline-secondary\" (click)=\"onCancel()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n <button \n type=\"button\" \n class=\"btn btn-primary\" \n (click)=\"onSubmit()\"\n [disabled]=\"editForm.invalid \|\| isLoading()\">\n @if (isLoading()) {\n <span class=\"spinner-border spinner-border-sm me-2\"></span>\n }\n <i class=\"bi bi-check-circle me-1\"></i>\n {{ isEdit ? 'Update' : 'Create' }} Template\n </button>\n</div>\n","import { Component, EventEmitter, Input, Output, signal, computed } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbActiveModal, NgbModule } from '@ng-bootstrap/ng-bootstrap';\nimport { ResourceVisibility } from '@noatgnu/cupcake-core';\n\nexport interface TemplateSchemaSelectionResult {\n name: string;\n description: string;\n schemaIds: number[];\n labGroupId?: number;\n visibility: ResourceVisibility;\n isDefault: boolean;\n}\n\n@Component({\n selector: 'ccv-template-schema-selection-modal',\n standalone: true,\n imports: [CommonModule, ReactiveFormsModule, NgbModule],\n templateUrl: './schema-selection-modal.html',\n styleUrl: './schema-selection-modal.scss'\n})\nexport class TemplateSchemaSelectionModal {\n @Input() availableSchemas: any[] = [];\n @Input() labGroups: any[] = [];\n @Output() templateCreated = new EventEmitter<TemplateSchemaSelectionResult>();\n\n templateForm: FormGroup;\n selectedSchemas = signal<Set<number>>(new Set());\n\n // Computed values\n selectedSchemasCount = computed(() => this.selectedSchemas().size);\n\n constructor(\n private fb: FormBuilder,\n public activeModal: NgbActiveModal\n ) {\n this.templateForm = this.fb.group({\n name: ['', [Validators.required, Validators.minLength(1)]],\n description: [''],\n labGroupId: [null],\n visibility: [ResourceVisibility.PRIVATE],\n isDefault: [false]\n });\n }\n\n toggleSchema(schemaId: number) {\n const current = this.selectedSchemas();\n const updated = new Set(current);\n \n if (updated.has(schemaId)) {\n updated.delete(schemaId);\n } else {\n updated.add(schemaId);\n }\n \n this.selectedSchemas.set(updated);\n this.updateDescription();\n }\n\n onSchemaCheckChange(event: Event, schemaId: number) {\n // Prevent event propagation to avoid double-toggle from card click\n event.stopPropagation();\n // Toggle the schema selection when checkbox is clicked\n this.toggleSchema(schemaId);\n }\n\n isSchemaSelected(schemaId: number): boolean {\n return this.selectedSchemas().has(schemaId);\n }\n\n getSelectedSchemas(): number[] {\n return [...this.selectedSchemas()];\n }\n\n removeSchema(schemaId: number) {\n const current = this.selectedSchemas();\n const updated = new Set(current);\n updated.delete(schemaId);\n this.selectedSchemas.set(updated);\n this.updateDescription();\n }\n\n getSchemaDisplayName(schemaId: number): string {\n const schema = this.availableSchemas.find(s => s.id === schemaId);\n return schema?.displayName \|\| schema?.name \|\| `Schema ${schemaId}`;\n }\n\n private updateDescription() {\n const selectedSchemas = this.getSelectedSchemas();\n if (selectedSchemas.length > 0 && !this.templateForm.get('description')?.dirty) {\n const schemaNames = selectedSchemas.map(id => this.getSchemaDisplayName(id)).join(', ');\n this.templateForm.patchValue({\n description: `Template created from schemas: ${schemaNames}`\n });\n }\n }\n\n canCreateTemplate(): boolean {\n const formValid = this.templateForm.valid;\n const hasSchemas = this.selectedSchemasCount() > 0;\n \n // Debug logging\n if (!formValid) {\n console.log('Form errors:', this.templateForm.errors);\n console.log('Form controls errors:', Object.keys(this.templateForm.controls).reduce((acc, key) => {\n const control = this.templateForm.get(key);\n if (control?.errors) {\n acc[key] = control.errors;\n }\n return acc;\n }, {} as any));\n }\n \n console.log('canCreateTemplate:', { formValid, hasSchemas, result: formValid && hasSchemas });\n return formValid && hasSchemas;\n }\n\n onCreateTemplate() {\n if (!this.canCreateTemplate()) {\n // Mark all fields as touched to show validation errors\n this.templateForm.markAllAsTouched();\n return;\n }\n\n const formValue = this.templateForm.value;\n const result: TemplateSchemaSelectionResult = {\n name: formValue.name,\n description: formValue.description \|\| '',\n schemaIds: this.getSelectedSchemas(),\n labGroupId: formValue.labGroupId \|\| undefined,\n visibility: formValue.visibility \|\| ResourceVisibility.PRIVATE,\n isDefault: formValue.isDefault \|\| false\n };\n\n this.templateCreated.emit(result);\n }\n\n onCancel() {\n this.activeModal.dismiss();\n }\n}\n","<div class=\"modal-header\">\n <h4 class=\"modal-title\">\n <i class=\"bi bi-file-earmark-plus me-2\"></i>Create Template from Schemas\n </h4>\n <button\n type=\"button\"\n class=\"btn-close\"\n aria-label=\"Close\"\n (click)=\"onCancel()\">\n </button>\n</div>\n\n<div class=\"modal-body\">\n <form [formGroup]=\"templateForm\" class=\"needs-validation\" novalidate>\n <!-- Template Basic Information -->\n <div class=\"card mb-4\">\n <div class=\"card-header\">\n <h6 class=\"mb-0\">\n <i class=\"bi bi-info-circle me-1\"></i>Template Information\n </h6>\n </div>\n <div class=\"card-body\">\n <div class=\"row\">\n <div class=\"col-12 mb-3\">\n <div class=\"form-floating\">\n <input\n type=\"text\"\n class=\"form-control\"\n [class.is-invalid]=\"templateForm.get('name')?.invalid && templateForm.get('name')?.touched\"\n id=\"templateName\"\n formControlName=\"name\"\n placeholder=\"Enter template name\">\n <label for=\"templateName\">Template Name </label>\n @if (templateForm.get('name')?.invalid && templateForm.get('name')?.touched) {\n <div class=\"invalid-feedback\">\n Template name is required.\n </div>\n }\n </div>\n </div>\n <div class=\"col-12 mb-3\">\n <div class=\"form-floating\">\n <textarea\n class=\"form-control\"\n id=\"templateDescription\"\n formControlName=\"description\"\n style=\"height: 80px\"\n placeholder=\"Enter template description\">\n </textarea>\n <label for=\"templateDescription\">Description</label>\n </div>\n </div>\n </div>\n </div>\n </div>\n\n <!-- Schema Selection -->\n <div class=\"card mb-4\">\n <div class=\"card-header d-flex justify-content-between align-items-center\">\n <h6 class=\"mb-0\">\n <i class=\"bi bi-check2-square me-1\"></i>Select Schemas\n </h6>\n <small class=\"text-muted\">{{ selectedSchemasCount() }} selected</small>\n </div>\n <div class=\"card-body\">\n @if (availableSchemas.length === 0) {\n <div class=\"text-center text-muted py-3\">\n <i class=\"bi bi-exclamation-triangle fs-4 d-block mb-2\"></i>\n No schemas available\n </div>\n } @else {\n <div class=\"row\">\n @for (schema of availableSchemas; track schema.id) {\n <div class=\"col-md-6 mb-2\">\n <div class=\"card schema-card\"\n [class.selected]=\"isSchemaSelected(schema.id)\"\n (click)=\"toggleSchema(schema.id)\">\n <div class=\"card-body p-3\">\n <div class=\"form-check\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n [id]=\"'schema-' + schema.id\"\n [checked]=\"isSchemaSelected(schema.id)\"\n (change)=\"onSchemaCheckChange($event, schema.id)\">\n <label class=\"form-check-label w-100\" [for]=\"'schema-' + schema.id\">\n <div class=\"d-flex justify-content-between align-items-start\">\n <div class=\"flex-grow-1\">\n <strong class=\"schema-title\">{{ schema.displayName }}</strong>\n @if (schema.description) {\n <p class=\"schema-description text-muted small mb-1\">\n {{ schema.description }}\n </p>\n }\n <div class=\"schema-metadata\">\n @if (schema.tags && schema.tags.length > 0) {\n @for (tag of schema.tags; track tag) {\n <span class=\"badge bg-secondary me-1\">{{ tag }}</span>\n }\n }\n @if (schema.usage_count > 0) {\n <small class=\"text-muted\">\n <i class=\"bi bi-graph-up me-1\"></i>{{ schema.usage_count }} uses\n </small>\n }\n </div>\n </div>\n </div>\n </label>\n </div>\n </div>\n </div>\n </div>\n }\n </div>\n\n @if (selectedSchemasCount() === 0) {\n <div class=\"alert alert-warning mt-3\" role=\"alert\">\n <i class=\"bi bi-exclamation-triangle me-2\"></i>\n Please select at least one schema to create a template.\n </div>\n }\n }\n </div>\n </div>\n\n <!-- Template Settings -->\n <div class=\"card mb-4\">\n <div class=\"card-header\">\n <h6 class=\"mb-0\">\n <i class=\"bi bi-gear me-1\"></i>Template Settings\n </h6>\n </div>\n <div class=\"card-body\">\n <div class=\"row\">\n <div class=\"col-md-6 mb-3\">\n <div class=\"form-floating\">\n <select\n class=\"form-select\"\n id=\"labGroup\"\n formControlName=\"labGroupId\">\n <option [ngValue]=\"null\">No Lab Group</option>\n @for (group of labGroups; track group.id) {\n <option [ngValue]=\"group.id\">{{ group.name }}</option>\n }\n </select>\n <label for=\"labGroup\">Lab Group</label>\n </div>\n </div>\n <div class=\"col-md-6\">\n <div class=\"form-check form-switch mb-3\">\n <input\n class=\"form-check-input\"\n type=\"checkbox\"\n id=\"isDefault\"\n formControlName=\"isDefault\">\n <label class=\"form-check-label\" for=\"isDefault\">\n <i class=\"bi bi-star me-1\"></i>Default Template\n </label>\n </div>\n </div>\n </div>\n </div>\n </div>\n\n <!-- Preview Section -->\n @if (selectedSchemasCount() > 0) {\n <div class=\"card\">\n <div class=\"card-header\">\n <h6 class=\"mb-0\">\n <i class=\"bi bi-eye me-1\"></i>Selected Schemas Preview\n </h6>\n </div>\n <div class=\"card-body\">\n <div class=\"d-flex flex-wrap gap-2\">\n @for (schemaId of getSelectedSchemas(); track schemaId) {\n <span class=\"badge bg-primary fs-6 py-2 px-3\">\n {{ getSchemaDisplayName(schemaId) }}\n <button\n type=\"button\"\n class=\"btn-close btn-close-white ms-2\"\n style=\"font-size: 0.6em;\"\n (click)=\"removeSchema(schemaId)\"\n [attr.aria-label]=\"'Remove ' + getSchemaDisplayName(schemaId)\">\n </button>\n </span>\n }\n </div>\n <p class=\"text-muted small mt-2 mb-0\">\n This template will combine columns from {{ selectedSchemasCount() }} schema{{ selectedSchemasCount() === 1 ? '' : 's' }}.\n </p>\n </div>\n </div>\n }\n </form>\n</div>\n\n<div class=\"modal-footer\">\n <button\n type=\"button\"\n class=\"btn btn-outline-secondary\"\n (click)=\"onCancel()\">\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\n </button>\n <button\n type=\"button\"\n class=\"btn btn-primary\"\n [disabled]=\"!canCreateTemplate()\"\n (click)=\"onCreateTemplate()\">\n <i class=\"bi bi-plus-circle me-1\"></i>Create Template\n </button>\n</div>\n","import { Component, OnInit, OnDestroy, signal } from '@angular/core';\r\nimport { CommonModule } from '@angular/common';\r\nimport { FormsModule } from '@angular/forms';\r\nimport { NgbActiveModal, NgbModule } from '@ng-bootstrap/ng-bootstrap';\r\nimport { Subject } from 'rxjs';\r\nimport { takeUntil } from 'rxjs/operators';\r\nimport { Schema } from '../../models';\r\nimport { SchemaService } from '../../services';\r\nimport { ToastService } from '@noatgnu/cupcake-core';\r\n\r\nexport interface SchemaSelectionResult {\r\n selectedSchemaIds: number[];\r\n}\r\n\r\n@Component({\r\n selector: 'ccv-schema-selection-modal',\r\n standalone: true,\r\n imports: [CommonModule, FormsModule, NgbModule],\r\n templateUrl: './schema-selection-modal.html',\r\n styleUrl: './schema-selection-modal.scss'\r\n})\r\nexport class SchemaSelectionModal implements OnInit, OnDestroy {\r\n private destroy$ = new Subject<void>();\r\n\r\n // Modal configuration - set from parent\r\n title = 'Select Schemas for Column Reordering';\r\n description = 'Choose which schemas to use for reordering columns. Columns will be ordered based on the selected schemas.';\r\n\r\n // State signals\r\n isLoading = signal(false);\r\n availableSchemas = signal<Schema[]>([]);\r\n selectedSchemaIds = signal<Set<number>>(new Set());\r\n searchTerm = signal('');\r\n\r\n constructor(\r\n public activeModal: NgbActiveModal,\r\n private schemaService: SchemaService,\r\n private toastService: ToastService\r\n ) {}\r\n\r\n ngOnInit(): void {\r\n this.loadAvailableSchemas();\r\n }\r\n\r\n ngOnDestroy(): void {\r\n this.destroy$.next();\r\n this.destroy$.complete();\r\n }\r\n\r\n private loadAvailableSchemas(): void {\r\n this.isLoading.set(true);\r\n\r\n this.schemaService.getAvailableSchemas().pipe(\r\n takeUntil(this.destroy$)\r\n ).subscribe({\r\n next: (schemas) => {\r\n this.availableSchemas.set(schemas.filter(schema => schema.isActive));\r\n this.isLoading.set(false);\r\n },\r\n error: (error) => {\r\n console.error('Error loading schemas:', error);\r\n this.toastService.error('Failed to load available schemas');\r\n this.isLoading.set(false);\r\n }\r\n });\r\n }\r\n\r\n get filteredSchemas(): Schema[] {\r\n const schemas = this.availableSchemas();\r\n const search = this.searchTerm().toLowerCase();\r\n\r\n if (!search) {\r\n return schemas;\r\n }\r\n\r\n return schemas.filter(schema =>\r\n schema.name.toLowerCase().includes(search) \|\|\r\n schema.description?.toLowerCase().includes(search) \|\|\r\n schema.category?.toLowerCase().includes(search)\r\n );\r\n }\r\n\r\n toggleSchemaSelection(schemaId: number): void {\r\n const selected = new Set(this.selectedSchemaIds());\r\n\r\n if (selected.has(schemaId)) {\r\n selected.delete(schemaId);\r\n } else {\r\n selected.add(schemaId);\r\n }\r\n\r\n this.selectedSchemaIds.set(selected);\r\n }\r\n\r\n isSchemaSelected(schemaId: number): boolean {\r\n return this.selectedSchemaIds().has(schemaId);\r\n }\r\n\r\n selectAll(): void {\r\n const allIds = new Set(this.filteredSchemas.map(schema => schema.id));\r\n this.selectedSchemaIds.set(allIds);\r\n }\r\n\r\n clearSelection(): void {\r\n this.selectedSchemaIds.set(new Set());\r\n }\r\n\r\n onCancel(): void {\r\n this.activeModal.dismiss();\r\n }\r\n\r\n onConfirm(): void {\r\n const selectedIds = Array.from(this.selectedSchemaIds());\r\n\r\n if (selectedIds.length === 0) {\r\n this.toastService.warning('Please select at least one schema');\r\n return;\r\n }\r\n\r\n const result: SchemaSelectionResult = {\r\n selectedSchemaIds: selectedIds\r\n };\r\n\r\n this.activeModal.close(result);\r\n }\r\n\r\n getBadgeClass(category?: string): string {\r\n if (!category) return 'bg-secondary';\r\n\r\n const categoryMap: Record<string, string> = {\r\n 'proteomics': 'bg-primary',\r\n 'genomics': 'bg-success',\r\n 'metabolomics': 'bg-info',\r\n 'general': 'bg-secondary',\r\n 'custom': 'bg-warning'\r\n };\r\n\r\n return categoryMap[category.toLowerCase()] \|\| 'bg-secondary';\r\n }\r\n}","<!-- Schema Selection Modal -->\r\n<div class=\"modal-header\">\r\n <h4 class=\"modal-title\">\r\n <i class=\"bi bi-arrows-move me-2\"></i>{{ title }}\r\n </h4>\r\n <button type=\"button\" class=\"btn-close\" aria-label=\"Close\" (click)=\"onCancel()\"></button>\r\n</div>\r\n\r\n<div class=\"modal-body\">\r\n <!-- Description -->\r\n <div class=\"alert alert-info mb-4\">\r\n <div class=\"d-flex align-items-start\">\r\n <i class=\"bi bi-info-circle-fill me-2 mt-1\"></i>\r\n <div>\r\n <small>{{ description }}</small>\r\n <br>\r\n <small class=\"text-muted\">\r\n Leave empty to use all available schemas or select specific ones for custom ordering.\r\n </small>\r\n </div>\r\n </div>\r\n </div>\r\n\r\n <!-- Search and Actions -->\r\n <div class=\"row mb-3\">\r\n <div class=\"col-md-8\">\r\n <div class=\"input-group\">\r\n <span class=\"input-group-text\">\r\n <i class=\"bi bi-search\"></i>\r\n </span>\r\n <input\r\n type=\"text\"\r\n class=\"form-control\"\r\n placeholder=\"Search schemas...\"\r\n [(ngModel)]=\"searchTerm\"\r\n [ngModelOptions]=\"{updateOn: 'change'}\"\r\n >\r\n </div>\r\n </div>\r\n <div class=\"col-md-4\">\r\n <div class=\"btn-group w-100\" role=\"group\">\r\n <button\r\n type=\"button\"\r\n class=\"btn btn-outline-primary btn-sm\"\r\n (click)=\"selectAll()\"\r\n [disabled]=\"filteredSchemas.length === 0\"\r\n title=\"Select All Visible\">\r\n <i class=\"bi bi-check-all\"></i> All\r\n </button>\r\n <button\r\n type=\"button\"\r\n class=\"btn btn-outline-secondary btn-sm\"\r\n (click)=\"clearSelection()\"\r\n [disabled]=\"selectedSchemaIds().size === 0\"\r\n title=\"Clear Selection\">\r\n <i class=\"bi bi-x-circle\"></i> Clear\r\n </button>\r\n </div>\r\n </div>\r\n </div>\r\n\r\n <!-- Selection Summary -->\r\n @if (selectedSchemaIds().size > 0) {\r\n <div class=\"alert alert-success mb-3\">\r\n <i class=\"bi bi-check-circle me-2\"></i>\r\n <strong>{{ selectedSchemaIds().size }}</strong> schema{{ selectedSchemaIds().size !== 1 ? 's' : '' }} selected\r\n </div>\r\n }\r\n\r\n <!-- Loading State -->\r\n @if (isLoading()) {\r\n <div class=\"text-center py-4\">\r\n <div class=\"spinner-border text-primary\" role=\"status\">\r\n <span class=\"visually-hidden\">Loading schemas...</span>\r\n </div>\r\n <p class=\"text-muted mt-2\">Loading available schemas...</p>\r\n </div>\r\n } @else {\r\n <!-- Schema List -->\r\n <div class=\"schema-list\" style=\"max-height: 400px; overflow-y: auto;\">\r\n @if (filteredSchemas.length === 0) {\r\n <div class=\"text-center py-4 text-muted\">\r\n <i class=\"bi bi-search fs-1 mb-3 opacity-50\"></i>\r\n <h6>No schemas found</h6>\r\n <p class=\"small mb-0\">\r\n @if (searchTerm()) {\r\n Try adjusting your search terms\r\n } @else {\r\n No schemas are currently available\r\n }\r\n </p>\r\n </div>\r\n } @else {\r\n @for (schema of filteredSchemas; track schema.id) {\r\n <div\r\n class=\"schema-item border rounded p-3 mb-2\"\r\n [class.selected]=\"isSchemaSelected(schema.id)\"\r\n (click)=\"toggleSchemaSelection(schema.id)\"\r\n role=\"button\">\r\n\r\n <div class=\"d-flex align-items-start\">\r\n <!-- Checkbox -->\r\n <div class=\"form-check me-3\">\r\n <input\r\n class=\"form-check-input\"\r\n type=\"checkbox\"\r\n [checked]=\"isSchemaSelected(schema.id)\"\r\n [id]=\"'schema-' + schema.id\"\r\n (click)=\"$event.stopPropagation()\">\r\n <label class=\"form-check-label visually-hidden\" [for]=\"'schema-' + schema.id\">\r\n Select {{ schema.name }}\r\n </label>\r\n </div>\r\n\r\n <!-- Schema Info -->\r\n <div class=\"flex-grow-1\">\r\n <div class=\"d-flex justify-content-between align-items-start mb-2\">\r\n <h6 class=\"mb-0 text-truncate me-2\">\r\n {{ schema.name }}\r\n @if (schema.version) {\r\n <small class=\"text-muted\">v{{ schema.version }}</small>\r\n }\r\n </h6>\r\n\r\n <div class=\"flex-shrink-0\">\r\n @if (schema.category) {\r\n <span class=\"badge\" [class]=\"getBadgeClass(schema.category)\">\r\n {{ schema.category }}\r\n </span>\r\n }\r\n </div>\r\n </div>\r\n\r\n @if (schema.description) {\r\n <p class=\"text-muted small mb-1\">{{ schema.description }}</p>\r\n }\r\n\r\n <div class=\"d-flex align-items-center justify-content-between\">\r\n @if (schema.columnsCount !== undefined) {\r\n <small class=\"text-muted\">\r\n <i class=\"bi bi-columns me-1\"></i>{{ schema.columnsCount }} columns\r\n </small>\r\n }\r\n\r\n @if (schema.url) {\r\n <a\r\n [href]=\"schema.url\"\r\n target=\"_blank\"\r\n class=\"btn btn-sm btn-outline-secondary\"\r\n title=\"View Schema Documentation\"\r\n (click)=\"$event.stopPropagation()\">\r\n <i class=\"bi bi-box-arrow-up-right\"></i>\r\n </a>\r\n }\r\n </div>\r\n </div>\r\n </div>\r\n </div>\r\n }\r\n }\r\n </div>\r\n }\r\n</div>\r\n\r\n<div class=\"modal-footer\">\r\n <button type=\"button\" class=\"btn btn-secondary\" (click)=\"onCancel()\">\r\n <i class=\"bi bi-x-circle me-1\"></i>Cancel\r\n </button>\r\n <button\r\n type=\"button\"\r\n class=\"btn btn-primary\"\r\n (click)=\"onConfirm()\"\r\n [disabled]=\"isLoading()\">\r\n <i class=\"bi bi-arrows-move me-1\"></i>\r\n @if (selectedSchemaIds().size > 0) {\r\n Reorder with {{ selectedSchemaIds().size }} Schema{{ selectedSchemaIds().size !== 1 ? 's' : '' }}\r\n } @else {\r\n Reorder with All Schemas\r\n }\r\n </button>\r\n</div>","import { Component, EventEmitter, Output, Input, OnInit } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup, Validators } from '@angular/forms';\nimport { NgbActiveModal } from '@ng-bootstrap/ng-bootstrap';\nimport { LabGroup } from '@noatgnu/cupcake-core';\nimport { MetadataTableTemplate } from '../../../models';\n\nexport interface TableCreationData {\n name: string;\n templateId: number;\n sampleCount?: number;\n description?: string;\n labGroupId?: number;\n}\n\n@Component({\n selector: 'ccv-table-creation-modal',\n standalone: true,\n imports: [CommonModule, ReactiveFormsModule],\n templateUrl: './table-creation-modal.html',\n styleUrl: './table-creation-modal.scss'\n})\nexport class TableCreationModalComponent implements OnInit {\n @Input() template!: MetadataTableTemplate;\n @Input() labGroups: LabGroup[] = [];\n @Input() selectedLabGroupId?: number;\n @Output() tableCreated = new EventEmitter<TableCreationData>();\n\n tableForm: FormGroup;\n isCreating = false;\n errorMessage: string \| null = null;\n\n constructor(\n private fb: FormBuilder,\n public activeModal: NgbActiveModal\n ) {\n this.tableForm = this.fb.group({\n name: ['', [Validators.required, Validators.minLength(2)]],\n sampleCount: [1, [Validators.required, Validators.min(1), Validators.max(10000)]],\n description: [''],\n labGroupId: [null]\n });\n }\n\n ngOnInit() {\n // Set default values\n if (this.template) {\n this.tableForm.patchValue({\n name: `${this.template.name} - Table`,\n labGroupId: this.selectedLabGroupId\n });\n }\n }\n\n onSubmit() {\n if (this.tableForm.valid && this.template) {\n this.isCreating = true;\n this.errorMessage = null;\n \n const formValue = this.tableForm.value;\n const tableData: TableCreationData = {\n name: formValue.name,\n templateId: this.template.id!,\n sampleCount: formValue.sampleCount \|\| 1,\n description: formValue.description \|\| undefined,\n labGroupId: formValue.labGroupId \|\| undefined\n };\n\n this.tableCreated.emit(tableData);\n }\n }\n\n onClose() {\n this.activeModal.dismiss();\n }\n\n setCreatingState(isCreating: boolean) {\n this.isCreating = isCreating;\n }\n\n setErrorMessage(message: string \| null) {\n this.errorMessage = message;\n }\n\n getFieldError(fieldName: string): string \| null {\n const field = this.tableForm.get(fieldName);\n if (field?.invalid && field?.touched) {\n if (field.errors?.['required']) {\n return `${this.getFieldLabel(fieldName)} is required`;\n }\n if (field.errors?.['minlength']) {\n return `${this.getFieldLabel(fieldName)} must be at least ${field.errors['minlength'].requiredLength} characters`;\n }\n if (field.errors?.['min']) {\n return `${this.getFieldLabel(fieldName)} must be at least ${field.errors['min'].min}`;\n }\n if (field.errors?.['max']) {\n return `${this.getFieldLabel(fieldName)} must be at most ${field.errors['max'].max}`;\n }\n }\n return null;\n }\n\n private getFieldLabel(fieldName: string): string {\n const labels: { [key: string]: string } = {\n name: 'Table name',\n sampleCount: 'Sample count',\n description: 'Description',\n labGroupId: 'Lab group'\n };\n return labels[fieldName] \|\| fieldName;\n }\n}\n","<div class=\"modal-header\">\n <h5 class=\"modal-title\">\n <i class=\"bi bi-table me-2\"></i>Create Table from Template\n </h5>\n <button type=\"button\" class=\"btn-close\" (click)=\"onClose()\" aria-label=\"Close\"></button>\n</div>\n\n<div class=\"modal-body\">\n @if (template) {\n <div class=\"alert alert-info d-flex align-items-center mb-4\">\n <i class=\"bi bi-info-circle me-2\"></i>\n <div>\n <strong>Template:</strong> {{ template.name }}\n @if (template.description) {\n <br><small>{{ template.description }}</small>\n }\n </div>\n </div>\n\n @if (errorMessage) {\n <div class=\"alert alert-danger d-flex align-items-center\">\n <i class=\"bi bi-exclamation-triangle me-2\"></i>\n {{ errorMessage }}\n </div>\n }\n\n <form [formGroup]=\"tableForm\" (ngSubmit)=\"onSubmit()\">\n <div class=\"row g-3\">\n <!-- Table Name -->\n <div class=\"col-12\">\n <div class=\"form-floating\">\n <input\n type=\"text\"\n class=\"form-control\"\n id=\"tableName\"\n formControlName=\"name\"\n placeholder=\"Table name\"\n [class.is-invalid]=\"getFieldError('name')\">\n <label for=\"tableName\">Table Name </label>\n </div>\n @if (getFieldError('name')) {\n <div class=\"invalid-feedback d-block\">\n {{ getFieldError('name') }}\n </div>\n }\n </div>\n\n <!-- Sample Count -->\n <div class=\"col-md-6\">\n <div class=\"form-floating\">\n <input\n type=\"number\"\n class=\"form-control\"\n id=\"sampleCount\"\n formControlName=\"sampleCount\"\n placeholder=\"Sample count\"\n min=\"1\"\n max=\"10000\"\n [class.is-invalid]=\"getFieldError('sampleCount')\">\n <label for=\"sampleCount\">Number of Samples </label>\n </div>\n @if (getFieldError('sampleCount')) {\n <div class=\"invalid-feedback d-block\">\n {{ getFieldError('sampleCount') }}\n </div>\n }\n <div class=\"form-text\">\n Number of sample rows to create in the table (1-10,000)\n </div>\n </div>\n\n <!-- Lab Group -->\n <div class=\"col-md-6\">\n <div class=\"form-floating\">\n <select\n class=\"form-select\"\n id=\"labGroupSelect\"\n formControlName=\"labGroupId\">\n <option [ngValue]=\"null\">No Lab Group</option>\n @for (group of labGroups; track group.id) {\n <option [ngValue]=\"group.id\">{{ group.name }}</option>\n }\n </select>\n <label for=\"labGroupSelect\">Lab Group</label>\n </div>\n <div class=\"form-text\">\n Optional: Assign table to a specific lab group\n </div>\n </div>\n\n <!-- Description -->\n <div class=\"col-12\">\n <div class=\"form-floating\">\n <textarea\n class=\"form-control\"\n id=\"tableDescription\"\n formControlName=\"description\"\n placeholder=\"Description\"\n style=\"height: 100px\"></textarea>\n <label for=\"tableDescription\">Description (optional)</label>\n </div>\n <div class=\"form-text\">\n Optional description for the metadata table\n </div>\n </div>\n </div>\n </form>\n }\n</div>\n\n<div class=\"modal-footer\">\n <button type=\"button\" class=\"btn btn-secondary\" (click)=\"onClose()\" [disabled]=\"isCreating\">\n Cancel\n </button>\n <button\n type=\"submit\"\n class=\"btn btn-success\"\n (click)=\"onSubmit()\"\n [disabled]=\"tableForm.invalid \|\| isCreating\">\n @if (isCreating) {\n <span class=\"spinner-border spinner-border-sm me-2\" role=\"status\"></span>\n }\n <i class=\"bi bi-table me-1\"></i>Create Table\n </button>\n</div>\n","import { Component, OnInit, signal, computed, effect } from '@angular/core';\nimport { CommonModule } from '@angular/common';\nimport { ReactiveFormsModule, FormBuilder, FormGroup } from '@angular/forms';\nimport { NgbModule, NgbModal } from '@ng-bootstrap/ng-bootstrap';\nimport { debounceTime, distinctUntilChanged } from 'rxjs';\nimport { MetadataTableTemplateEditModal } from './metadata-table-template-edit-modal/metadata-table-template-edit-modal';\nimport { TemplateSchemaSelectionModal, TemplateSchemaSelectionResult } from './schema-selection-modal/schema-selection-modal';\nimport { SchemaSelectionModal as ReorderSchemaSelectionModal, SchemaSelectionResult as ReorderSchemaSelectionResult } from '../schema-selection-modal/schema-selection-modal';\nimport { TableCreationModalComponent, TableCreationData } from './table-creation-modal/table-creation-modal';\nimport { LabGroupService } from '@noatgnu/cupcake-core';\nimport { AsyncTaskUIService } from '../async-task-ui';\nimport { LabGroup, LabGroupQueryResponse, ResourceVisibility } from '@noatgnu/cupcake-core';\nimport {\n MetadataTableTemplate,\n MetadataTableTemplateQueryResponse,\n MetadataTable,\n MetadataTableTemplateCreateRequest\n} from '../../models';\nimport { MetadataTableTemplateService } from '../../services/metadata-table-template';\nimport { ToastService } from '@noatgnu/cupcake-core';\n\n@Component({\n selector: 'ccv-metadata-table-templates',\n imports: [CommonModule, ReactiveFormsModule, NgbModule],\n templateUrl: './metadata-table-templates.html',\n styleUrl: './metadata-table-templates.scss'\n})\nexport class MetadataTableTemplates implements OnInit {\n searchForm: FormGroup;\n\n // Signals for reactive state management\n private searchParams = signal({\n search: '',\n labGroupId: null as number \| null,\n visibility: ResourceVisibility.PRIVATE,\n isDefault: false,\n limit: 10,\n offset: 0\n });\n\n private labGroupParams = signal({\n limit: 10,\n offset: 0\n });\n\n // Computed signals for better performance\n isLoading = signal(false);\n selectedLabGroup = signal<LabGroup \| null>(null);\n currentPage = signal(1);\n pageSize = signal(10);\n totalItems = signal(0);\n\n labGroupsCurrentPage = signal(1);\n labGroupsPageSize = signal(10);\n labGroupsTotalItems = signal(0);\n\n // Direct signal-based data management\n templatesData = signal<MetadataTableTemplateQueryResponse>({ count: 0, results: [] });\n labGroupsData = signal<LabGroupQueryResponse>({ count: 0, results: [] });\n\n\n // Computed values for better performance\n hasTemplates = computed(() => this.templatesData().results.length > 0);\n hasLabGroups = computed(() => this.labGroupsData().results.length > 0);\n showTemplatesPagination = computed(() => this.templatesData().count > this.pageSize());\n showLabGroupsPagination = computed(() => this.labGroupsData().count > this.labGroupsPageSize());\n\n // Schema-related properties\n availableSchemas = signal<any[]>([]);\n isLoadingSchemas = signal(false);\n\n constructor(\n private fb: FormBuilder,\n private metadataTableTemplateService: MetadataTableTemplateService,\n private labGroupService: LabGroupService,\n private modalService: NgbModal,\n private toastService: ToastService,\n private asyncTaskService: AsyncTaskUIService\n ) {\n this.searchForm = this.fb.group({\n search: [''],\n labGroupId: [null],\n visibility: [ResourceVisibility.PRIVATE],\n isDefault: [false]\n });\n\n // Effect to automatically reload templates when search params change\n effect(() => {\n const params = this.searchParams();\n this.loadTemplatesWithParams(params);\n });\n\n // Effect to automatically reload lab groups when params change\n effect(() => {\n const params = this.labGroupParams();\n this.loadLabGroupsWithParams(params);\n });\n }\n\n ngOnInit() {\n this.setupSearch();\n this.loadInitialData();\n this.loadAvailableSchemas();\n }\n\n private loadInitialData() {\n // Initial load - signals will handle subsequent updates via effects\n this.labGroupParams.set({\n limit: this.labGroupsPageSize(),\n offset: 0\n });\n\n this.searchParams.set({\n search: '',\n labGroupId: null,\n visibility: ResourceVisibility.PRIVATE,\n isDefault: false,\n limit: this.pageSize(),\n offset: 0\n });\n }\n\n private loadLabGroupsWithParams(params: { limit: number; offset: number }) {\n this.labGroupService.getMyLabGroups(params).subscribe({\n next: (response) => {\n this.labGroupsTotalItems.set(response.count);\n this.labGroupsData.set(response);\n },\n error: (error) => {\n console.error('Error loading lab groups:', error);\n this.labGroupsData.set({ count: 0, results: [] });\n }\n });\n }\n\n private setupSearch() {\n // Subscribe to form changes and update search params signal\n this.searchForm.valueChanges.pipe(\n debounceTime(300),\n distinctUntilChanged()\n ).subscribe(formValue => {\n // Reset to first page when searching\n this.currentPage.set(1);\n\n // Update search params signal - this will trigger the effect\n this.searchParams.set({\n search: formValue.search \|\| '',\n labGroupId: formValue.labGroupId \|\| null,\n visibility: formValue.visibility \|\| ResourceVisibility.PRIVATE,\n isDefault: formValue.isDefault \|\| false,\n limit: this.pageSize(),\n offset: 0 // Always start from first page when searching\n });\n });\n }\n\n private loadTemplatesWithParams(params: any) {\n this.isLoading.set(true);\n\n this.metadataTableTemplateService.getMetadataTableTemplates({\n search: params.search \|\| undefined,\n labGroupId: params.labGroupId \|\| undefined,\n visibility: params.visibility \|\| undefined,\n isDefault: params.isDefault \|\| undefined,\n limit: params.limit,\n offset: params.offset\n }).subscribe({\n next: (response) => {\n this.isLoading.set(false);\n this.totalItems.set(response.count);\n this.templatesData.set(response);\n },\n error: (error) => {\n this.isLoading.set(false);\n console.error('Error loading metadata table templates:', error);\n this.templatesData.set({ count: 0, results: [] });\n }\n });\n }\n\n onLabGroupChange(event: Event) {\n const target = event.target as HTMLSelectElement;\n const value = target.value;\n const id = value === 'null' ? null : Number(value);\n const labGroup = id ? this.findLabGroupById(id) : null;\n this.selectedLabGroup.set(labGroup);\n this.currentPage.set(1);\n\n // Update search params - effect will trigger reload\n this.searchParams.update(params => ({\n ...params,\n labGroupId: id,\n offset: 0\n }));\n }\n\n private findLabGroupById(id: number): LabGroup \| null {\n const labGroups = this.labGroupsData();\n return labGroups.results.find((group: LabGroup) => group.id === id) \|\| null;\n }\n\n getLabGroupName(labGroupId: number \| undefined): string {\n if (!labGroupId) return '-';\n const labGroup = this.findLabGroupById(labGroupId);\n return labGroup?.name \|\| labGroupId.toString();\n }\n\n onPageChange(page: number) {\n this.currentPage.set(page);\n this.searchParams.update(params => ({\n ...params,\n offset: (page - 1) * this.pageSize()\n }));\n }\n\n onLabGroupsPageChange(page: number) {\n this.labGroupsCurrentPage.set(page);\n this.labGroupParams.set({\n limit: this.labGroupsPageSize(),\n offset: (page - 1) * this.labGroupsPageSize()\n });\n }\n\n createTemplate() {\n this.openTemplateModal(null, false);\n }\n\n editTemplate(template: MetadataTableTemplate) {\n this.openTemplateModal(template, true);\n }\n\n deleteTemplate(template: MetadataTableTemplate) {\n // Enhanced delete confirmation with better UX\n const confirmMessage = `Are you sure you want to delete the template \"${template.name}\"?\\n\\nThis action cannot be undone.`;\n\n if (confirm(confirmMessage)) {\n this.isLoading.set(true);\n this.metadataTableTemplateService.deleteMetadataTableTemplate(template.id!).subscribe({\n next: () => {\n this.isLoading.set(false);\n console.log('Template deleted successfully');\n this.refreshTemplates();\n },\n error: (error) => {\n this.isLoading.set(false);\n console.error('Error deleting template:', error);\n alert('Failed to delete template. Please try again.');\n }\n });\n }\n }\n\n duplicateTemplate(template: MetadataTableTemplate) {\n const duplicatedTemplate: MetadataTableTemplateCreateRequest = {\n name: `${template.name} (Copy)`,\n description: template.description,\n userColumnIds: [...(template.userColumnIds \|\| [])],\n fieldMaskMapping: { ...template.fieldMaskMapping },\n visibility: ResourceVisibility.PRIVATE, // Always create as private\n isDefault: false, // Never default\n labGroup: template.labGroup \|\| this.selectedLabGroup()?.id \|\| undefined\n };\n\n this.isLoading.set(true);\n this.metadataTableTemplateService.createMetadataTableTemplate(duplicatedTemplate).subscribe({\n next: (newTemplate) => {\n this.isLoading.set(false);\n console.log('Template duplicated:', newTemplate);\n this.refreshTemplates();\n },\n error: (error) => {\n this.isLoading.set(false);\n console.error('Error duplicating template:', error);\n alert('Failed to duplicate template. Please try again.');\n }\n });\n }\n\n private openTemplateModal(template: MetadataTableTemplate \| null, isEdit: boolean) {\n const modalRef = this.modalService.open(MetadataTableTemplateEditModal, {\n size: 'lg',\n backdrop: 'static',\n keyboard: false\n });\n\n modalRef.componentInstance.template = template;\n modalRef.componentInstance.labGroups = this.labGroupsData().results;\n modalRef.componentInstance.isEdit = isEdit;\n\n modalRef.componentInstance.templateSaved.subscribe((templateData: Partial<MetadataTableTemplate>) => {\n this.handleTemplateSave(templateData, template?.id \|\| null, isEdit);\n modalRef.componentInstance.onClose();\n });\n }\n\n private handleTemplateSave(templateData: Partial<MetadataTableTemplate>, templateId: number \| null, isEdit: boolean) {\n this.isLoading.set(true);\n\n const apiCall = isEdit && templateId\n ? this.metadataTableTemplateService.updateMetadataTableTemplate(templateId, templateData)\n : this.metadataTableTemplateService.createMetadataTableTemplate(templateData as MetadataTableTemplateCreateRequest);\n\n apiCall.subscribe({\n next: (template) => {\n this.isLoading.set(false);\n console.log(`Metadata table template ${isEdit ? 'updated' : 'created'}:`, template);\n this.refreshTemplates();\n },\n error: (error) => {\n this.isLoading.set(false);\n console.error(`Error ${isEdit ? 'updating' : 'creating'} metadata table template:`, error);\n alert(`Failed to ${isEdit ? 'update' : 'create'} template. Please try again.`);\n }\n });\n }\n\n private refreshTemplates() {\n // Trigger a refresh by updating the search params\n this.searchParams.update(params => ({ ...params }));\n }\n\n private loadAvailableSchemas() {\n this.isLoadingSchemas.set(true);\n\n this.metadataTableTemplateService.getAvailableSchemas().subscribe({\n next: (schemas) => {\n this.availableSchemas.set(schemas);\n this.isLoadingSchemas.set(false);\n },\n error: (error) => {\n console.error('Error loading schemas:', error);\n this.isLoadingSchemas.set(false);\n }\n });\n }\n\n\n createTemplateWithCustomSchemas() {\n this.openSchemaSelectionModal();\n }\n\n private openSchemaSelectionModal() {\n const modalRef = this.modalService.open(TemplateSchemaSelectionModal, {\n size: 'xl',\n backdrop: 'static',\n keyboard: false\n });\n\n // Pass data to the modal\n modalRef.componentInstance.availableSchemas = this.availableSchemas();\n modalRef.componentInstance.labGroups = this.labGroupsData().results;\n\n // Handle modal result\n modalRef.componentInstance.templateCreated.subscribe((result: TemplateSchemaSelectionResult) => {\n this.handleSchemaTemplateCreation(result);\n modalRef.close();\n });\n }\n\n private handleSchemaTemplateCreation(result: TemplateSchemaSelectionResult) {\n this.isLoading.set(true);\n\n const templateData = {\n name: result.name,\n schemaIds: result.schemaIds,\n description: result.description,\n labGroupId: result.labGroupId,\n visibility: result.visibility,\n isDefault: result.isDefault\n };\n\n this.metadataTableTemplateService.createFromSchema({\n schemaIds: result.schemaIds,\n name: result.name,\n description: result.description\n }).subscribe({\n next: (response) => {\n this.isLoading.set(false);\n console.log('Template created from schemas:', response);\n this.refreshTemplates();\n },\n error: (error) => {\n this.isLoading.set(false);\n console.error('Error creating template from schemas:', error);\n alert('Failed to create template from schemas. Please try again.');\n }\n });\n }\n\n createTableFromTemplate(template: MetadataTableTemplate) {\n this.openTableCreationModal(template);\n }\n\n private openTableCreationModal(template: MetadataTableTemplate) {\n const modalRef = this.modalService.open(TableCreationModalComponent, {\n size: 'lg',\n backdrop: 'static',\n keyboard: false\n });\n\n modalRef.componentInstance.template = template;\n modalRef.componentInstance.labGroups = this.labGroupsData().results;\n modalRef.componentInstance.selectedLabGroupId = this.selectedLabGroup()?.id;\n\n modalRef.componentInstance.tableCreated.subscribe((tableData: TableCreationData) => {\n this.handleTableCreation(tableData, modalRef);\n });\n }\n\n private handleTableCreation = (data: TableCreationData, modalRef?: any): void => {\n this.isLoading.set(true);\n\n // Set creating state on modal if provided\n if (modalRef?.componentInstance) {\n modalRef.componentInstance.setCreatingState(true);\n }\n\n this.metadataTableTemplateService.createTableFromTemplate({\n templateId: data.templateId,\n name: data.name,\n description: data.description,\n sampleCount: data.sampleCount \|\| 1\n }).subscribe({\n next: (response: MetadataTable) => {\n this.isLoading.set(false);\n console.log('Metadata table created from template:', response);\n\n // Close modal and show success message\n if (modalRef) {\n modalRef.close();\n }\n\n this.toastService.success(`Table \"${response.name}\" created successfully!`);\n },\n error: (error: { error?: { detail?: string; message?: string }; message?: string }) => {\n this.isLoading.set(false);\n console.error('Error creating table from template:', error);\n\n // Reset creating state on modal if provided and show error\n if (modalRef?.componentInstance) {\n modalRef.componentInstance.setCreatingState(false);\n const errorMsg = error?.error?.detail \|\| error?.error?.message \|\| error?.message \|\| 'Failed to create table from template. Please try again.';\n modalRef.componentInstance.setErrorMessage(errorMsg);\n } else {\n const errorMsg = error?.error?.detail \|\| error?.error?.message \|\| error?.message \|\| 'Failed to create table from template. Please try again.';\n this.toastService.error(errorMsg);\n }\n }\n });\n }\n\n /*\n Reorder template columns by schema selection\n /\n reorderTemplateColumns(template: MetadataTableTemplate): void {\n if (!template.columnCount \|\| template.columnCount === 0) {\n this.toastService.warning('Template has no columns to reorder');\n return;\n }\n\n const modalRef = this.modalService.open(ReorderSchemaSelectionModal, {\n size: 'lg',\n backdrop: 'static'\n });\n\n modalRef.componentInstance.title = 'Reorder Template Columns by Schema';\n modalRef.componentInstance.description = `Select schemas to reorder columns in template \"${template.name}\". Columns will be arranged based on the selected schema order.`;\n\n modalRef.result.then((result: ReorderSchemaSelectionResult) => {\n if (result && result.selectedSchemaIds) {\n this.performTemplateColumnReorder(template.id, result.selectedSchemaIds);\n }\n }).catch(() => {\n // Modal was dismissed - no action needed\n });\n }\n\n /\n Perform the actual template column reordering with async task monitoring\n /\n private performTemplateColumnReorder(templateId: number, schemaIds: number[]): void {\n this.isLoading.set(true);\n\n this.metadataTableTemplateService.reorderColumnsBySchemaAsync(templateId, schemaIds).subscribe({\n next: (response) => {\n console.log('Template column reorder task started:', response);\n this.toastService.success(`Template column reorder task queued successfully! Task ID: ${response.taskId}`);\n \n // Mark task for monitoring and start real-time updates (same pattern as other async operations)\n this.asyncTaskService.monitorTask(response.taskId);\n this.asyncTaskService.startRealtimeUpdates();\n \n this.isLoading.set(false);\n },\n error: (error) => {\n console.error('Error starting template column reorder:', error);\n this.toastService.error('Failed to start template column reordering');\n this.isLoading.set(false);\n }\n });\n }\n}\n","<div class=\"metadata-table-templates-container\">\n <!-- Header Section -->\n <nav class=\"navbar navbar-expand-lg bg-body-tertiary shadow-sm\">\n <div class=\"container-fluid\">\n <div class=\"d-flex align-items-center justify-content-between w-100\">\n <div class=\"d-flex align-items-center\">\n <h4 class=\"navbar-brand m-0 fw-bold\">\n <i class=\"bi bi-file-earmark-text me-2\"></i>Table Templates\n </h4>\n @if (selectedLabGroup()) {\n <span class=\"badge bg-primary ms-3\">{{ selectedLabGroup()!.name }}</span>\n }\n </div>\n <div class=\"d-flex gap-2\">\n <div class=\"btn-group\" ngbDropdown>\n <button type=\"button\" class=\"btn btn-primary btn-sm dropdown-toggle\" ngbDropdownToggle>\n <i class=\"bi bi-plus me-1\"></i>New Template\n </button>\n <div class=\"dropdown-menu dropdown-menu-end\" ngbDropdownMenu>\n <a class=\"dropdown-item\" href=\"#\" (click)=\"createTemplateWithCustomSchemas(); $event.preventDefault()\"\n title=\"Select one or multiple schemas to create template\">\n <i class=\"bi bi-file-earmark-text me-2\"></i>\n <strong>Create from Schemas</strong>\n </a>\n <div class=\"dropdown-divider\"></div>\n <a class=\"dropdown-item\" href=\"#\" (click)=\"createTemplate(); $event.preventDefault()\"\n title=\"Create from scratch\">\n <i class=\"bi bi-wrench me-2\"></i>\n <strong>Manual Configuration</strong>\n </a>\n </div>\n </div>\n </div>\n </div>\n </div>\n </nav>\n\n <div class=\"templates-content p-4\">\n <!-- Search and Filters Section -->\n <div class=\"card mb-4\">\n <div class=\"card-header\">\n <h5 class=\"mb-0\">\n <i class=\"bi bi-search me-2\"></i>Search & Filters\n </h5>\n </div>\n <div class=\"card-body\">\n <form [formGroup]=\"searchForm\" class=\"row g-3\">\n <div class=\"col-md-3\">\n <div class=\"form-floating\">\n <input\n type=\"search\"\n class=\"form-control\"\n id=\"templateSearch\"\n formControlName=\"search\"\n placeholder=\"Search templates...\">\n <label for=\"templateSearch\">\n <i class=\"bi bi-search me-1\"></i>Search Templates\n </label>\n </div>\n </div>\n <div class=\"col-md-3\">\n <div class=\"form-floating\">\n <select\n class=\"form-select\"\n id=\"labGroupSelect\"\n formControlName=\"labGroupId\"\n (change)=\"onLabGroupChange($event)\">\n <option [ngValue]=\"null\">All Lab Groups</option>\n @if (hasLabGroups()) {\n @for (group of labGroupsData().results; 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