@nivora/matrix 0.1.0 → 0.1.1

package/.next/trace-build

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package/README.md

@@ -1,35 +1,78 @@
-# GAMP 5 V-Model Traceability System
+# Matrix - GAMP 5 Traceability System
 
-A streamlined requirements traceability and test management system designed for regulated environments, using **Gherkin as the source of truth** for Functional Specifications.
+A **spec-as-code** requirements traceability system for regulated environments. Write Gherkin specs, run them as tests, and maintain automatic audit-ready traceability.
 
-📚 **Documentation**:
-- [**User Guide**](./USER_GUIDE.md): How to use the dashboard and CLI.
-- [**Developer Guide**](./DEVELOPER_GUIDE.md): Architecture, setup, and development workflow.
-- [**Philosophy & Approach**](./GAMP_AND_V_MODEL.md): GAMP 5 principles, V-Model, and "Spec-as-Code" reasoning.
+## Quickstart
 
+```bash
+bun add @nivora/matrix
+bunx matrix init
+bunx matrix serve
+```
+
+Dashboard available at: http://localhost:3000
 
-## Data Model
+---
 
-This system uses a **relational model** with 3 artifact types and no duplicate data:
+## Core Concepts
 
-| Artifact | Format | Location | Purpose |
-|----------|--------|----------|---------|
-| **URS** | Database | SQLite Table `urs` | High-level business requirements |
-| **FS** | Gherkin | `specs/fs/*.requirement` | Functional specs + embedded test scenarios |
-| **RISK** | Database | SQLite Table `risks` | Risk assessments linked to FS |
+This system implements **GAMP 5** and **V-Model** compliance by making specifications executable:
 
-### Key Insight: Gherkin IS the Functional Specification
+| Artifact | Storage | Purpose |
+|----------|---------|---------|
+| **URS** | SQLite DB | High-level business requirements |
+| **FS** | Gherkin `.requirement` files | Functional specs + test scenarios |
+| **Risk** | SQLite DB | Risk assessments & mitigations |
+| **Release** | SQLite DB | Version management & test results |
 
-Instead of maintaining separate FS documents and test files, we use Gherkin Feature files AS the functional specification:
+**Key Insight**: The Gherkin Feature file IS the Functional Spec AND the test. No duplication.
 
 ```gherkin
 @URS-001 @RISK-001
-Feature: FS-001 User Login Authentication
-  The system shall provide a login interface that authenticates users 
-  against stored credentials and establishes a secure session.
+Feature: FS-001 User Login
+  The system shall authenticate users against stored credentials.
+  
+  Scenario: Successful login
+    Given I am on the login page
+    When I enter valid credentials
+    Then I should see my dashboard
+```
+
+---
+
+## Workflow
+
+### 1. Create User Requirements (URS)
+
+**Option A: Dashboard UI**
+1. Navigate to http://localhost:3000/specs
+2. Click "New Specification"
+3. Fill in Title, Business Need, Acceptance Criteria
+4. Save
+
+**Option B: Stub Generation (Recommended)**
+
+Reference URS IDs in your Gherkin files before they exist:
+
+```gherkin
+@URS-011
+Feature: FS-009 Password Reset
+```
+
+Run `matrix sync` and the system creates a placeholder `URS-011` record. Fill in details via the dashboard later.
+
+### 2. Write Functional Specs (FS)
+
+Create `.requirement` files in `specs/fs/`:
+
+```gherkin
+@URS-001 @URS-002 @RISK-005
+Feature: FS-001 User Authentication
+  The system shall authenticate users against stored credentials
+  and establish a secure session.
   
   Requirements:
-  - FR-001.1: Display login form with email and password fields
+  - FR-001.1: Display login form with email and password
   - FR-001.2: Validate credentials against stored hash
   - FR-001.3: Rate limit after 5 failed attempts
 
@@ -37,149 +80,192 @@ Feature: FS-001 User Login Authentication
     Given I am on the login page
     When I enter valid credentials
     Then I should be redirected to my dashboard
+
+  Scenario: Failed login locks account after 5 attempts
+    Given I have failed login 4 times
+    When I enter invalid credentials
+    Then I should see "Account locked"
 ```
 
-**Benefits:**
-- **No duplication**: The Feature description IS the spec, scenarios ARE the tests
-- **Single source of truth**: Edit one file, both spec and tests are updated
-- **Clear traceability**: `@URS-xxx` and `@RISK-xxx` tags create automatic links
-- **Executable specs**: The `.requirement` files can be run by Cucumber
+**Linking Tags:**
+- `@URS-xxx` — Links to User Requirement
+- `@RISK-xxx` — Links to Risk Assessment
 
-## Directory Structure
+### 3. Create Risk Assessments
 
-```
-docs/
-├── specs/
-│   └── fs/                     # Functional Specs (Gherkin)
-│       ├── FS-001-login.requirement
-│       ├── FS-002-session.requirement
-│       ├── FS-003-registration.requirement
-│       ├── FS-004-booking.requirement
-│       ├── FS-005-waitlist.requirement
-│       ├── FS-006-schedule.requirement
-│       └── FS-007-instructor.requirement
-└── src/                        # Next.js Dashboard
-```
+**Option A: Dashboard UI** — Same flow as URS
 
-## Linking Artifacts
+**Option B: Stub Generation** — Reference `@RISK-xxx` in Gherkin, run sync, fill in details later
 
-### URS to FS
-Use `@URS-xxx` tag in the Gherkin Feature:
-```gherkin
-@URS-001
-Feature: FS-001 User Login
+### 4. Sync to Database
+
+```bash
+matrix sync
 ```
 
-### FS to Risk
-Use `@RISK-xxx` tag in the Gherkin Feature:
-```gherkin
-@URS-001 @RISK-001
-Feature: FS-001 User Login
+**What sync does:**
+1. Parses all `.requirement` files in `specs/fs/`
+2. Updates database with Feature titles, descriptions, and scenarios
+3. Extracts `@URS` and `@RISK` tags
+4. Auto-creates stub records for any referenced IDs that don't exist
+
+> **Tip:** Write Gherkin first with new IDs, run sync, then fill in URS/Risk details via the dashboard.
+
+---
+
+## Release Management
+
+### 1. Create a Release
+
+```bash
+matrix release create -v 1.0.0 -n "MVP Launch" --notes "Initial release"
 ```
 
-### Verification Levels (V-Model)
-- **URS** → Verified by **PQ** (Performance Qualification)
-- **FS** → Verified by **OQ** (Operational Qualification)  
-- **Scenarios** → Verified by **IQ** (Installation Qualification)
+Creates a release with:
+- **Version**: Semantic version (e.g., 1.0.0)
+- **Name**: Human-readable name  
+- **Status**: Defaults to "planning"
+- **Notes**: Optional release notes
 
-## Running the Dashboard
+### 2. Tag Features to Release
 
 ```bash
-cd docs
-bun install
-bun run dev
+matrix release tag REL-001 --fs FS-001 FS-002 FS-003
 ```
 
-Access at: http://localhost:3000
+### 3. Run Tests
 
-## Dashboard Pages
+Execute Cucumber tests and export results:
 
-| Page | Description |
-|------|-------------|
-| `/` | Dashboard with stats, coverage, and traceability summary |
-| `/specs` | Browse URS (YAML), FS (Gherkin), and Risk (YAML) |
-| `/matrix` | Full traceability matrix: URS → FS → Scenarios → Risks |
-| `/builder` | Visual editor for creating new FS .requirement files |
-| `/search` | Search across all artifacts |
-
-## Creating New Artifacts
-
-### New URS (via Dashboard or manually)
-Create `specs/urs/URS-xxx.yaml`:
-```yaml
-id: URS-004
-type: urs
-title: New Business Requirement
-status: draft
-priority: high
-owner: Product Team
-category: Core
-business_need: |
-  Description of the business need...
-intended_use: |
-  How the system will be used...
-acceptance_criteria:
-  - Criterion 1
-  - Criterion 2
-regulatory_refs:
-  - GAMP 5
+```bash
+npx cucumber-js specs/fs/**/*.requirement --format json:results.json
 ```
 
-### New FS (via Builder or manually)
-Create `specs/fs/FS-xxx-name.requirement`:
-```gherkin
-@URS-xxx @RISK-xxx
-Feature: FS-xxx Feature Title
-  The system shall...
-  
-  Requirements:
-  - FR-xxx.1: First requirement
-  - FR-xxx.2: Second requirement
+### 4. Import Test Results
+
+```bash
+matrix release import-results results.json --releaseId REL-001
+```
+
+Or use the test command:
 
-  Scenario: Test case 1
-    Given ...
-    When ...
-    Then ...
+```bash
+matrix test import results.json -r REL-001
 ```
 
-### New Risk (manually)
-Create `specs/risk/RISK-xxx.yaml`:
-```yaml
-id: RISK-004
-type: risk
-title: Risk Title
-status: draft
-category: Security
-gamp_category: 4
-fs_ids:
-  - FS-001
-impact: high
-probability: medium
-risk_level: high
-risks:
-  - id: R-004.1
-    description: Risk description
-    impact: high
-    probability: medium
-mitigations:
-  - risk_id: R-004.1
-    control: Control measure
-    test: How to test
-residual_risk: acceptable
+The import process:
+- Creates a test run record
+- Stores individual scenario results (pass/fail)
+- Warns if any tests failed
+- Updates release status to "testing"
+
+### 5. View Test Results
+
+```bash
+matrix test list REL-001
 ```
 
-## Running Tests
+### 6. Handle Test Failures
+
+If tests fail, you have two GAMP-compliant options:
+
+**Option A: Fix the Code**
+1. Fix the failing functionality
+2. Re-run tests
+3. Import the new results
+
+**Option B: Log a Defect/Deviation**
+1. Go to Release Detail page: `http://localhost:3000/releases/REL-001`
+2. Find the **Defects & Deviations** section
+3. Click **Log Defect** for the failing scenario
+4. Provide:
+   - **Description**: What failed and why
+   - **Justification**: Why it's acceptable (workaround exists, low impact, etc.)
+   - **Status**: Open, Investigating, Resolved, or Accepted
 
-The `.requirement` files are standard Gherkin and can be executed with Cucumber:
+> [!IMPORTANT]
+> You cannot mark a release as "Released" if it has failing tests without corresponding Defect records.
+
+### 7. Update Release Status
 
 ```bash
-# Configure cucumber to find .requirement files
-npx cucumber-js specs/fs/**/*.requirement
+# Move to testing phase
+matrix release status REL-001 --status testing
+
+# Mark as released (requires all tests pass or defects logged)
+matrix release status REL-001 --status released
 ```
 
+### 8. List All Releases
+
+```bash
+matrix release list
+```
+
+---
+
+## CLI Reference
+
+### Core Commands
+
+| Command | Description |
+|---------|-------------|
+| `matrix init` | Initialize a new specs directory |
+| `matrix serve` | Start the dashboard server |
+| `matrix sync` | Parse `.requirement` files and update database |
+| `matrix search <query>` | Semantic search across specs |
+
+### Release Commands
+
+| Command | Description |
+|---------|-------------|
+| `matrix release list` | List all releases |
+| `matrix release create` | Create a new release |
+| `matrix release tag <id>` | Tag FS records to a release |
+| `matrix release status <id>` | Update release status |
+| `matrix release import-results <file>` | Import Cucumber JSON results |
+
+### Test Commands
+
+| Command | Description |
+|---------|-------------|
+| `matrix test import <file> -r <releaseId>` | Import Cucumber JSON results |
+| `matrix test list <releaseId>` | List test runs for a release |
+
+### Common Options
+
+| Option | Description |
+|--------|-------------|
+| `-p, --port <port>` | Port for serve (default: 3000) |
+| `-s, --specs <dir>` | Specs directory (default: ./specs) |
+| `-d, --db <path>` | Database path (default: ./matrix.db) |
+
+---
+
+## Dashboard Pages
+
+| Page | URL | Description |
+|------|-----|-------------|
+| Home | `/` | Stats, coverage, and traceability overview |
+| Specs | `/specs` | Browse and edit URS, FS, and Risks |
+| Matrix | `/matrix` | Full traceability matrix: URS → FS → Scenarios → Risks |
+| Releases | `/releases` | Release management and test results |
+| Builder | `/builder` | Visual editor for creating FS files |
+| Search | `/search` | Search across all artifacts |
+
+---
+
 ## GAMP 5 Compliance
 
-- **Category 4**: Configured products (authentication, session management)
-- **Category 5**: Custom applications (booking transactions)
-- **21 CFR Part 11**: Electronic records and signatures ready
-- **ALCOA+**: Data integrity principles for booking records
+- **V-Model Integration**: FS files serve as both specification (FS) and test protocol (OQ)
+- **Risk-Based Testing**: `@RISK-xxx` tags prioritize validation effort
+- **Automatic Traceability**: Tag-based linking generates audit-ready matrices
+- **Defect Management**: Failed tests require formal deviation records before release
+- **21 CFR Part 11 Ready**: Full audit trail of changes and test results
+
+---
+
+## Additional Documentation
+
+- [Developer Guide](./DEVELOPER_GUIDE.md) - Architecture and development setup
+- [GAMP & V-Model Philosophy](./GAMP_AND_V_MODEL.md) - Design rationale

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@nivora/matrix",
-  "version": "0.1.0",
+  "version": "0.1.1",
   "description": "Requirements documentation system with semantic search",
   "type": "module",
   "bin": {

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package/.next/static/chunks/app/releases/page-26a520d9789e69f5.js

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