@nirnex/cli 4.2.1 → 5.0.0

package/dist/commands/index.d.ts

@@ -3,6 +3,8 @@ export interface IndexResult {
     failed: number;
     failedFiles: string[];
     durationMs: number;
+    fullCount: number;
+    excludedCount: number;
     debugLogPath?: string;
 }
 export declare function indexCommand(args: string[], commandLabel?: string): IndexResult;

package/dist/commands/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/commands/index.ts"],"names":[],"mappings":"AA0CA,MAAM,WAAW,WAAW;IAC1B,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE,MAAM,CAAC;IACf,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED,wBAAgB,YAAY,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,YAAY,CAAC,EAAE,MAAM,GAAG,WAAW,CA6G/E"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/commands/index.ts"],"names":[],"mappings":"AA4FA,MAAM,WAAW,WAAW;IAC1B,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE,MAAM,CAAC;IACf,WAAW,EAAE,MAAM,EAAE,CAAC;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,aAAa,EAAE,MAAM,CAAC;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAID,wBAAgB,YAAY,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,YAAY,CAAC,EAAE,MAAM,GAAG,WAAW,CAyN/E"}

package/dist/commands/index.js

@@ -1,23 +1,46 @@
-import { openDb, insertParsedModule, setMetaCommitHash, computeGraphEdges } from '@nirnex/core/dist/db.js';
+import { openDb, writeFullIndexRecord, writeExcludedIndexRecord, setMetaCommitHash, computeGraphEdges, checkSchemaVersionOrRebuild, } from '@nirnex/core/dist/db.js';
+import { discoverCandidates, detectRepoContext, loadScopePolicy, classifyFile, buildScopeSummary, printScopeSummary, explainScope, printExplainScope, } from '@nirnex/core/dist/scope/index.js';
 import { parseFileWithDiagnostics } from '@nirnex/parser/dist/index.js';
+import { checkParserCompatibility } from '@nirnex/parser/dist/compatibility.js';
 import { appendDebugLog } from '../utils/debug-log.js';
 import fs from 'node:fs';
 import path from 'node:path';
 import { execSync } from 'node:child_process';
-function walkDir(dir, callback) {
-    const files = fs.readdirSync(dir);
-    for (const f of files) {
-        const full = path.join(dir, f);
-        if (f === 'node_modules' || f === 'dist' || f === '.git')
-            continue;
-        if (fs.statSync(full).isDirectory()) {
-            walkDir(full, callback);
+function parseIndexArgs(args) {
+    let isRebuild = false;
+    let explainPath = null;
+    let cliIgnore;
+    let cliInclude;
+    for (let i = 0; i < args.length; i++) {
+        const a = args[i];
+        if (a === '--rebuild') {
+            isRebuild = true;
+        }
+        else if (a === '--explain-scope') {
+            explainPath = args[i + 1] ?? null;
+            i++;
+        }
+        else if (a.startsWith('--explain-scope=')) {
+            explainPath = a.slice('--explain-scope='.length);
+        }
+        else if (a === '--ignore') {
+            cliIgnore = args[i + 1];
+            i++;
+        }
+        else if (a.startsWith('--ignore=')) {
+            cliIgnore = a.slice('--ignore='.length);
+        }
+        else if (a === '--include') {
+            cliInclude = args[i + 1];
+            i++;
         }
-        else if (full.endsWith('.ts') || full.endsWith('.tsx')) {
-            callback(full);
+        else if (a.startsWith('--include=')) {
+            cliInclude = a.slice('--include='.length);
         }
     }
+    return { isRebuild, explainPath, cliIgnore, cliInclude };
 }
+// ─── Import / module helpers ──────────────────────────────────────────────────
 function resolveImport(source, activePath) {
     if (source.startsWith('.')) {
         const dir = path.dirname(activePath);
@@ -36,97 +59,191 @@ function detectModule(fullPath, rootDir) {
     const parts = rel.split(path.sep);
     if (parts[0] === 'packages' && parts.length > 2)
         return parts[0] + '/' + parts[1];
+    if (parts[0] === 'apps' && parts.length > 2)
+        return parts[0] + '/' + parts[1];
     if (parts[0] === 'src' && parts.length > 2)
         return parts[0] + '/' + parts[1];
     return parts[0];
 }
+// ─── Main command ─────────────────────────────────────────────────────────────
 export function indexCommand(args, commandLabel) {
-    const isRebuild = args.includes('--rebuild');
+    const { isRebuild, explainPath, cliIgnore, cliInclude } = parseIndexArgs(args);
     const targetDir = process.cwd();
     const label = commandLabel ?? (isRebuild ? 'index --rebuild' : 'index');
+    // ── --explain-scope mode ────────────────────────────────────────────────────
+    if (explainPath !== null) {
+        return runExplainScope(explainPath, targetDir);
+    }
+    // ── Schema version check ────────────────────────────────────────────────────
     const dbPath = path.join(targetDir, '.aidos.db');
-    console.log('[nirnex index] Starting ' + (isRebuild ? 'full rebuild' : 'incremental update') + ' on ' + targetDir);
+    const schemaCheck = checkSchemaVersionOrRebuild(dbPath, isRebuild);
+    if (schemaCheck.needsRebuild) {
+        process.stderr.write(`\x1b[33m[nirnex index]\x1b[0m ${schemaCheck.message}\n`);
+        process.exitCode = 1;
+        return { succeeded: 0, failed: 0, failedFiles: [], durationMs: 0, fullCount: 0, excludedCount: 0 };
+    }
+    // ── Parser health check ─────────────────────────────────────────────────────
+    const compat = checkParserCompatibility();
+    if (!compat.healthy) {
+        const failedTests = compat.smokeTests.filter(t => t.status === 'fail');
+        process.stderr.write('\n\x1b[31m[nirnex index] Parser health check FAILED — aborting\x1b[0m\n');
+        process.stderr.write(`  tree-sitter:            ${compat.treeSitterVersion ?? 'unknown'}\n`);
+        process.stderr.write(`  tree-sitter-typescript: ${compat.treeSitterTypescriptVersion ?? 'unknown'}\n`);
+        for (const t of failedTests) {
+            process.stderr.write(`  ✖ smoke test "${t.name}" (${t.lang}): ${t.errorMessage}\n`);
+        }
+        process.stderr.write('\n  Fix: npm install -g @nirnex/cli\n\n');
+        return { succeeded: 0, failed: 0, failedFiles: [], durationMs: 0, fullCount: 0, excludedCount: 0 };
+    }
+    if (!compat.inSupportedMatrix) {
+        process.stderr.write(`\x1b[33m[nirnex index] Warning:\x1b[0m Parser versions outside the tested matrix.\n` +
+            `  tree-sitter: ${compat.treeSitterVersion ?? 'unknown'} (supported: 0.21.x)\n` +
+            `  tree-sitter-typescript: ${compat.treeSitterTypescriptVersion ?? 'unknown'} (supported: 0.23.x)\n` +
+            `  Run: npm install -g @nirnex/cli to restore tested versions.\n`);
+    }
     const t0 = performance.now();
-    const db = openDb(dbPath);
-    let filesToProcess = [];
-    if (isRebuild) {
-        walkDir(targetDir, (p) => filesToProcess.push(p));
+    console.log(`[nirnex index] Starting ${isRebuild ? 'full rebuild' : 'incremental update'} on ${targetDir}`);
+    // ── Stage 1: Load scope policy ──────────────────────────────────────────────
+    const policy = loadScopePolicy(targetDir, { ignore: cliIgnore, include: cliInclude });
+    // ── Stage 2: Detect repo context ────────────────────────────────────────────
+    const ctx = detectRepoContext(targetDir);
+    if (ctx.isMonorepo) {
+        console.log(`[nirnex index] Monorepo detected — ${ctx.appContexts.length} package(s): ` +
+            ctx.appContexts.map(a => `${a.root || '.'} (${a.framework})`).join(', '));
     }
-    else {
+    // ── Stage 3: Discover candidates ────────────────────────────────────────────
+    const candidates = discoverCandidates(targetDir, policy);
+    // ── Stage 4: Classify files ──────────────────────────────────────────────────
+    const decisions = candidates.map(file => classifyFile(file, ctx, policy));
+    const fullFiles = decisions.filter(d => d.tier === 'FULL');
+    const excludedFiles = decisions.filter(d => d.tier === 'EXCLUDED');
+    // ── Stage 5: Incremental filter (for non-rebuild) ───────────────────────────
+    let filesToIndex = fullFiles;
+    if (!isRebuild) {
         try {
-            const diffStr = execSync('git diff --name-only HEAD~1..HEAD', { encoding: 'utf8', cwd: targetDir });
-            filesToProcess = diffStr.split('\n').filter(Boolean)
-                .map(f => path.join(targetDir, f))
-                .filter(f => (f.endsWith('.ts') || f.endsWith('.tsx')) && fs.existsSync(f));
+            const diffStr = execSync('git diff --name-only HEAD~1..HEAD', {
+                encoding: 'utf8',
+                cwd: targetDir,
+                stdio: ['pipe', 'pipe', 'ignore'],
+            });
+            const changedSet = new Set(diffStr.split('\n')
+                .map(l => l.trim())
+                .filter(Boolean)
+                .map(f => f.split(path.sep).join('/')));
+            if (changedSet.size > 0) {
+                filesToIndex = fullFiles.filter(d => changedSet.has(d.path));
+                if (filesToIndex.length === 0) {
+                    // No FULL files changed — still open DB to write scope decisions
+                    filesToIndex = [];
+                }
+            }
         }
-        catch (_err) {
-            console.warn('Could not get changed files from git, falling back to all.');
-            walkDir(targetDir, (p) => filesToProcess.push(p));
+        catch {
+            // Not a git repo or no previous commit — index all FULL files
         }
     }
+    // ── Stage 6: Open DB ────────────────────────────────────────────────────────
+    const db = openDb(dbPath);
     db.exec('BEGIN TRANSACTION');
+    const compatCtx = {
+        treeSitterVersion: compat.treeSitterVersion,
+        treeSitterTypescriptVersion: compat.treeSitterTypescriptVersion,
+        inSupportedMatrix: compat.inSupportedMatrix,
+    };
     let succeeded = 0;
     let failed = 0;
     const failedFiles = [];
     let debugLogPath;
-    for (const file of filesToProcess) {
-        const result = parseFileWithDiagnostics(file);
+    // ── Stage 7a: Index FULL files ───────────────────────────────────────────────
+    for (const decision of filesToIndex) {
+        const absPath = path.join(targetDir, decision.path);
+        const result = parseFileWithDiagnostics(absPath);
         if (!result.ok) {
             failed++;
-            failedFiles.push(file);
-            // Write structured debug record — first failure prints the log path
-            const logPath = appendDebugLog(targetDir, result.diagnostics, label);
+            failedFiles.push(decision.path);
+            const logPath = appendDebugLog(targetDir, result.diagnostics, label, compatCtx);
             if (failed === 1) {
                 debugLogPath = logPath;
-                process.stderr.write(`[nirnex index]   suspected cause: ${result.diagnostics.stage} stage failure` +
-                    ` (${result.diagnostics.extension} / ${result.diagnostics.selected_language ?? 'unknown grammar'})\n` +
-                    `[nirnex index]   debug details → ${path.relative(targetDir, logPath)}\n`);
+                process.stderr.write(`[nirnex index]   parse failure at stage: ${result.diagnostics.stage}` +
+                    ` (${result.diagnostics.extension})\n` +
+                    `[nirnex index]   debug → ${path.relative(targetDir, logPath)}\n`);
             }
+            // Still write an excluded record so --explain-scope can show what happened
+            writeExcludedIndexRecord(db, decision.path, {
+                ...decision,
+                tier: 'EXCLUDED',
+                reasonCode: 'HARD_SCREEN_BINARY',
+                matchedRule: `parse failure: ${result.diagnostics.error_message}`,
+            });
             continue;
         }
         const parsed = result.module;
-        const myModule = detectModule(file, targetDir);
+        const myModule = detectModule(absPath, targetDir);
         const enrichedImports = parsed.imports.map((imp) => {
-            const resolved = resolveImport(imp.source, file);
+            const resolved = resolveImport(imp.source, absPath);
             let is_cross_module = false;
             if (resolved.is_local) {
                 const theirModule = detectModule(resolved.resolved, targetDir);
                 is_cross_module = myModule !== theirModule;
             }
-            return {
-                ...imp,
-                resolved: resolved.resolved,
-                is_local: resolved.is_local,
-                is_cross_module,
-            };
+            return { ...imp, resolved: resolved.resolved, is_local: resolved.is_local, is_cross_module };
         });
-        insertParsedModule(db, { ...parsed, imports: enrichedImports });
+        writeFullIndexRecord(db, { ...parsed, imports: enrichedImports }, decision);
         succeeded++;
     }
+    // ── Stage 7b: Write EXCLUDED presence records ────────────────────────────────
+    // Only write records for files that are in scope of this run
+    // (skip if incremental — excluded files don't change based on code diffs)
+    if (isRebuild) {
+        for (const decision of excludedFiles) {
+            writeExcludedIndexRecord(db, decision.path, decision);
+        }
+    }
     computeGraphEdges(db);
     db.exec('COMMIT');
     try {
-        const commitHash = execSync('git rev-parse HEAD', { encoding: 'utf8', cwd: targetDir }).trim();
+        const commitHash = execSync('git rev-parse HEAD', {
+            encoding: 'utf8',
+            cwd: targetDir,
+            stdio: ['pipe', 'pipe', 'ignore'],
+        }).trim();
         setMetaCommitHash(db, commitHash);
     }
-    catch (_err) {
-        // Ignore if not a git repo
+    catch {
+        // Not a git repo
     }
-    const t1 = performance.now();
-    const durationMs = t1 - t0;
+    const durationMs = performance.now() - t0;
+    // ── Stage 8: Output ─────────────────────────────────────────────────────────
     if (failed === 0) {
-        console.log(`[nirnex index] Finished: ${succeeded}/${filesToProcess.length} file(s) indexed in ${durationMs.toFixed(2)}ms`);
+        console.log(`[nirnex index] Indexed ${succeeded} file(s) in ${durationMs.toFixed(0)}ms`);
     }
     else {
-        process.stderr.write(`[nirnex index] Finished with degraded coverage: ${succeeded}/${filesToProcess.length} indexed, ` +
-            `${failed} failed in ${durationMs.toFixed(2)}ms\n`);
+        process.stderr.write(`[nirnex index] Degraded: ${succeeded} indexed, ${failed} failed in ${durationMs.toFixed(0)}ms\n`);
         for (const f of failedFiles) {
-            process.stderr.write(`[nirnex index]   ✖ ${path.relative(targetDir, f)}\n`);
+            process.stderr.write(`[nirnex index]   ✖ ${f}\n`);
         }
         if (failed > 1 && debugLogPath) {
-            process.stderr.write(`[nirnex index] ${failed} parser failures recorded → ${path.relative(targetDir, debugLogPath)}\n`);
+            process.stderr.write(`[nirnex index] ${failed} parser failures → ${path.relative(targetDir, debugLogPath)}\n`);
         }
     }
-    return { succeeded, failed, failedFiles, durationMs, debugLogPath };
+    const summary = buildScopeSummary(decisions, durationMs);
+    printScopeSummary(summary);
+    return {
+        succeeded,
+        failed,
+        failedFiles,
+        durationMs,
+        fullCount: fullFiles.length,
+        excludedCount: excludedFiles.length,
+        debugLogPath,
+    };
+}
+// ─── --explain-scope handler ──────────────────────────────────────────────────
+function runExplainScope(inputPath, targetDir) {
+    const policy = loadScopePolicy(targetDir);
+    const ctx = detectRepoContext(targetDir);
+    const result = explainScope(inputPath, targetDir, ctx, policy);
+    printExplainScope(result);
+    return { succeeded: 0, failed: 0, failedFiles: [], durationMs: 0, fullCount: 0, excludedCount: 0 };
 }
 //# sourceMappingURL=index.js.map

package/dist/commands/index.js.map

@@ -1 +1 @@
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package/dist/utils/debug-log.d.ts

@@ -5,6 +5,11 @@
  * Never throws — debug logging must never interrupt indexing.
  */
 import type { ParseFileDiagnostics } from '@nirnex/parser/dist/index.js';
+export interface CompatibilityContext {
+    treeSitterVersion?: string;
+    treeSitterTypescriptVersion?: string;
+    inSupportedMatrix: boolean;
+}
 export interface DebugLogEntry {
     timestamp: string;
     level: 'error' | 'warn' | 'info';
@@ -15,8 +20,10 @@ export interface DebugLogEntry {
     nirnex_cli_version?: string;
     nirnex_parser_version?: string;
     tree_sitter_version?: string;
+    tree_sitter_typescript_version?: string;
     grammar_package: string;
     grammar_variant?: string;
+    in_supported_matrix?: boolean;
     file: string;
     extension: string;
     size_bytes: number;
@@ -40,5 +47,5 @@ export interface DebugLogEntry {
  * Returns the absolute path to the log file.
  * Never throws.
  */
-export declare function appendDebugLog(cwd: string, diag: ParseFileDiagnostics, command: string): string;
+export declare function appendDebugLog(cwd: string, diag: ParseFileDiagnostics, command: string, compat?: CompatibilityContext): string;
 //# sourceMappingURL=debug-log.d.ts.map

package/dist/utils/debug-log.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"debug-log.d.ts","sourceRoot":"","sources":["../../src/utils/debug-log.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAKH,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,8BAA8B,CAAC;AAwIzE,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,OAAO,GAAG,MAAM,GAAG,MAAM,CAAC;IACjC,KAAK,EAAE,gBAAgB,CAAC;IACxB,OAAO,EAAE,MAAM,CAAC;IAEhB,YAAY,EAAE,MAAM,CAAC;IACrB,QAAQ,EAAE,MAAM,CAAC;IACjB,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B,qBAAqB,CAAC,EAAE,MAAM,CAAC;IAC/B,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,eAAe,EAAE,MAAM,CAAC;IACxB,eAAe,CAAC,EAAE,MAAM,CAAC;IAEzB,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;IACnB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,aAAa,CAAC,EAAE,MAAM,CAAC;IAEvB,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,UAAU,CAAC,EAAE,MAAM,CAAC;IAEpB,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;IACnB,aAAa,EAAE,MAAM,CAAC;IACtB,KAAK,CAAC,EAAE,MAAM,CAAC;IAEf,eAAe,EAAE,MAAM,CAAC;IACxB,mBAAmB,EAAE,MAAM,EAAE,CAAC;CAC/B;AAID;;;;GAIG;AACH,wBAAgB,cAAc,CAC5B,GAAG,EAAE,MAAM,EACX,IAAI,EAAE,oBAAoB,EAC1B,OAAO,EAAE,MAAM,GACd,MAAM,CAyDR"}
+{"version":3,"file":"debug-log.d.ts","sourceRoot":"","sources":["../../src/utils/debug-log.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAKH,OAAO,KAAK,EAAE,oBAAoB,EAAE,MAAM,8BAA8B,CAAC;AAsBzE,MAAM,WAAW,oBAAoB;IACnC,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,2BAA2B,CAAC,EAAE,MAAM,CAAC;IACrC,iBAAiB,EAAE,OAAO,CAAC;CAC5B;AAmJD,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,OAAO,GAAG,MAAM,GAAG,MAAM,CAAC;IACjC,KAAK,EAAE,gBAAgB,CAAC;IACxB,OAAO,EAAE,MAAM,CAAC;IAEhB,YAAY,EAAE,MAAM,CAAC;IACrB,QAAQ,EAAE,MAAM,CAAC;IACjB,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B,qBAAqB,CAAC,EAAE,MAAM,CAAC;IAC/B,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,8BAA8B,CAAC,EAAE,MAAM,CAAC;IACxC,eAAe,EAAE,MAAM,CAAC;IACxB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,mBAAmB,CAAC,EAAE,OAAO,CAAC;IAE9B,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;IACnB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,aAAa,CAAC,EAAE,MAAM,CAAC;IAEvB,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,UAAU,CAAC,EAAE,MAAM,CAAC;IAEpB,KAAK,EAAE,MAAM,CAAC;IACd,UAAU,EAAE,MAAM,CAAC;IACnB,aAAa,EAAE,MAAM,CAAC;IACtB,KAAK,CAAC,EAAE,MAAM,CAAC;IAEf,eAAe,EAAE,MAAM,CAAC;IACxB,mBAAmB,EAAE,MAAM,EAAE,CAAC;CAC/B;AAID;;;;GAIG;AACH,wBAAgB,cAAc,CAC5B,GAAG,EAAE,MAAM,EACX,IAAI,EAAE,oBAAoB,EAC1B,OAAO,EAAE,MAAM,EACf,MAAM,CAAC,EAAE,oBAAoB,GAC5B,MAAM,CA4DR"}

package/dist/utils/debug-log.js

@@ -18,20 +18,37 @@ function pkgVersion(name) {
         return undefined;
     }
 }
-function classify(diag) {
-    // Grammar set failed — ABI / binding problem
+function classify(diag, compat) {
+    // ── Version mismatch — most likely cause when outside the tested matrix ──────
+    // Only applies to parse-stage failures; set_language failures have their own cause.
+    if (compat &&
+        !compat.inSupportedMatrix &&
+        (diag.stage === 'parse' || diag.stage === 'set_language')) {
+        return {
+            suspected_cause: 'parser_dependency_version_mismatch',
+            recommended_actions: [
+                `Installed: tree-sitter@${compat.treeSitterVersion ?? 'unknown'} + ` +
+                    `tree-sitter-typescript@${compat.treeSitterTypescriptVersion ?? 'unknown'}`,
+                'These versions are outside the tested compatibility matrix for Nirnex',
+                'Supported: tree-sitter@0.21.x + tree-sitter-typescript@0.23.x',
+                'Fix: npm install -g @nirnex/cli to restore exact pinned versions',
+                'Then retry: nirnex index --rebuild',
+            ],
+        };
+    }
+    // ── Grammar set failed — ABI / binding problem ────────────────────────────
     if (diag.stage === 'set_language') {
         return {
             suspected_cause: 'grammar_binding_problem',
             recommended_actions: [
                 'The tree-sitter language could not be set — likely a native ABI or version mismatch',
-                'Run: npm ls tree-sitter tree-sitter-typescript',
+                `Run: npm ls tree-sitter tree-sitter-typescript`,
                 'Reinstall: npm install -g @nirnex/cli',
                 'Check Node.js version compatibility with the tree-sitter native module',
             ],
         };
     }
-    // TSX file got TypeScript grammar — should never happen, but detectable
+    // ── TSX file got TypeScript grammar — Nirnex bug ──────────────────────────
     if (diag.extension === '.tsx' && diag.selected_language === 'typescript') {
         return {
             suspected_cause: 'wrong_grammar_selected',
@@ -42,7 +59,7 @@ function classify(diag) {
             ],
         };
     }
-    // Null bytes — binary or incorrectly encoded file
+    // ── Null bytes — binary or incorrectly encoded file ───────────────────────
     if (diag.has_null_bytes) {
         return {
             suspected_cause: 'invalid_file_encoding',
@@ -53,7 +70,7 @@ function classify(diag) {
             ],
         };
     }
-    // Non-string passed to parse() — Nirnex bug
+    // ── Non-string passed to parse() — Nirnex bug ─────────────────────────────
     if (diag.input_type !== undefined && diag.input_type !== 'string') {
         return {
             suspected_cause: 'invalid_parse_input_type',
@@ -63,7 +80,7 @@ function classify(diag) {
             ],
         };
     }
-    // File could not be read or decoded
+    // ── File could not be read or decoded ─────────────────────────────────────
     if (diag.stage === 'read_file' || diag.stage === 'decode_file') {
         return {
             suspected_cause: 'file_access_or_encoding_error',
@@ -74,33 +91,38 @@ function classify(diag) {
             ],
         };
     }
-    // Parse stage failure for .tsx — grammar or syntax issue
+    // ── Parse stage failure, versions confirmed compatible ────────────────────
+    // The environment is healthy (smoke tests passed, versions in matrix),
+    // so the failure is specific to this file's content.
     if (diag.stage === 'parse' && diag.extension === '.tsx') {
+        const inMatrix = compat?.inSupportedMatrix ?? true; // assume ok if no context
         return {
-            suspected_cause: 'unsupported_syntax_or_parser_binding_issue',
+            suspected_cause: inMatrix
+                ? 'file_specific_syntax_not_supported_by_grammar'
+                : 'unsupported_syntax_or_parser_binding_issue',
             recommended_actions: [
-                'The TSX grammar (tree-sitter-typescript) could not parse this file',
-                'Possible causes: very new JSX/TS syntax, very large file, or ABI mismatch in native bindings',
-                'Run: npm ls tree-sitter tree-sitter-typescript — look for version mismatches',
-                'Try reproducing with a minimal .tsx snippet to isolate the syntax involved',
-                'If other .tsx files parse successfully, the issue is specific to this file\'s syntax',
-                'File a bug report with this log entry if the problem persists',
+                'The TSX grammar parsed other .tsx files successfully — the issue is specific to this file',
+                'Possible causes: very new JSX/TS syntax, unusually deep AST nesting, or unicode edge cases',
+                'Try isolating the syntax: comment out sections until the file parses',
+                'Check the content_sha256 to identify the exact file version that failed',
+                'File a bug report with this log entry so the grammar can be improved',
             ],
         };
     }
-    // Parse stage failure for .ts
     if (diag.stage === 'parse' && diag.extension === '.ts') {
+        const inMatrix = compat?.inSupportedMatrix ?? true;
         return {
-            suspected_cause: 'unsupported_syntax_or_parser_binding_issue',
+            suspected_cause: inMatrix
+                ? 'file_specific_syntax_not_supported_by_grammar'
+                : 'unsupported_syntax_or_parser_binding_issue',
             recommended_actions: [
-                'The TypeScript grammar (tree-sitter-typescript) could not parse this file',
-                'Run: npm ls tree-sitter tree-sitter-typescript — look for version mismatches',
-                'Try reproducing with a minimal .ts snippet',
+                'The TypeScript grammar parsed other .ts files successfully — the issue is specific to this file',
+                'Try isolating the syntax: comment out sections until the file parses',
                 'File a bug report with this log entry if the problem persists',
             ],
         };
     }
-    // AST traversal bug — Nirnex bug, not user file
+    // ── AST traversal bug — Nirnex bug, not user file ─────────────────────────
     if (diag.stage === 'postprocess_ast') {
         return {
             suspected_cause: 'nirnex_ast_traversal_bug',
@@ -120,13 +142,13 @@ function classify(diag) {
         ],
     };
 }
-// ─── Main export ─────────────────────────────────────────────────────────────
+// ─── Main export ──────────────────────────────────────────────────────────────
 /**
  * Appends a structured JSONL record to `.ai-index/nirnex-debug.log`.
  * Returns the absolute path to the log file.
  * Never throws.
  */
-export function appendDebugLog(cwd, diag, command) {
+export function appendDebugLog(cwd, diag, command, compat) {
     const logDir = path.join(cwd, '.ai-index');
     const logPath = path.join(logDir, 'nirnex-debug.log');
     try {
@@ -142,7 +164,7 @@ export function appendDebugLog(cwd, diag, command) {
         catch {
             // Log may not exist yet — that's fine
         }
-        const { suspected_cause, recommended_actions } = classify(diag);
+        const { suspected_cause, recommended_actions } = classify(diag, compat);
         const entry = {
             timestamp: new Date().toISOString(),
             level: 'error',
@@ -152,9 +174,11 @@ export function appendDebugLog(cwd, diag, command) {
             platform: `${process.platform}-${process.arch}`,
             nirnex_cli_version: pkgVersion('@nirnex/cli'),
             nirnex_parser_version: pkgVersion('@nirnex/parser'),
-            tree_sitter_version: pkgVersion('tree-sitter'),
+            tree_sitter_version: compat?.treeSitterVersion ?? pkgVersion('tree-sitter'),
+            tree_sitter_typescript_version: compat?.treeSitterTypescriptVersion ?? pkgVersion('tree-sitter-typescript'),
             grammar_package: 'tree-sitter-typescript',
             grammar_variant: diag.grammar_variant,
+            in_supported_matrix: compat?.inSupportedMatrix,
             file: diag.file,
             extension: diag.extension,
             size_bytes: diag.size_bytes,

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@nirnex/cli",
-  "version": "4.2.1",
+  "version": "5.0.0",
   "description": "Nirnex CLI — Decision Intelligence for software delivery",
   "type": "module",
   "bin": {