@nirnex/cli 4.0.0 → 4.1.1

package/dist/commands/remove.d.ts

@@ -0,0 +1,14 @@
+interface RemoveOpts {
+    yes: boolean;
+    dryRun: boolean;
+    force: boolean;
+    keepData: boolean;
+    keepSpecs: boolean;
+    keepClaude: boolean;
+    purgeData: boolean;
+    json: boolean;
+}
+declare function runRemove(cwd: string, opts: RemoveOpts): Promise<void>;
+export { runRemove };
+export declare function removeCommand(args: string[]): Promise<void>;
+//# sourceMappingURL=remove.d.ts.map

package/dist/commands/remove.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/remove.js

@@ -0,0 +1,678 @@
+// Command: nirnex remove
+// Safely detach Nirnex from a repository without damaging user files,
+// hooks, settings, or source code that Nirnex did not create.
+import fs from 'node:fs';
+import path from 'node:path';
+import readline from 'node:readline';
+// ─── Known default templates (from setup.ts) ───────────────────────────────
+const NIRNEX_HOOK_COMMANDS = new Set([
+    '.claude/hooks/nirnex-bootstrap.sh',
+    '.claude/hooks/nirnex-entry.sh',
+    '.claude/hooks/nirnex-guard.sh',
+    '.claude/hooks/nirnex-trace.sh',
+    '.claude/hooks/nirnex-validate.sh',
+]);
+const NIRNEX_HOOK_SCRIPTS = {
+    'nirnex-bootstrap.sh': '#!/bin/sh\nexec nirnex runtime bootstrap\n',
+    'nirnex-entry.sh': '#!/bin/sh\nexec nirnex runtime entry\n',
+    'nirnex-guard.sh': '#!/bin/sh\nexec nirnex runtime guard\n',
+    'nirnex-trace.sh': '#!/bin/sh\nexec nirnex runtime trace\n',
+    'nirnex-validate.sh': '#!/bin/sh\nexec nirnex runtime validate\n',
+};
+const POST_COMMIT_EXACT = '#!/bin/sh\nnirnex index\n';
+const POST_COMMIT_LINE = 'nirnex index';
+const DEFAULT_CRITICAL_PATHS_PREFIX = '# Critical Paths\n# List architecturally critical files';
+const DEFAULT_ANALYST_PREFIX = '# Analyst Persona\n\n## Role\nYou are the Analyst agent in the Nirnex pipeline.';
+const DEFAULT_IMPLEMENTER_PREFIX = '# Implementer Persona\n\n## Role\nYou are the Implementer agent in the Nirnex pipeline.';
+const DEFAULT_CALIBRATION_PREFIX = '# Calibration\n\nProject-specific calibration files for Nirnex.';
+// ─── Helpers ──────────────────────────────────────────────────────────────
+function cross(msg) {
+    process.stdout.write(`  \x1b[31m✖\x1b[0m ${msg}\n`);
+}
+function tick(msg) {
+    process.stdout.write(`  \x1b[32m✔\x1b[0m ${msg}\n`);
+}
+function skip(msg) {
+    process.stdout.write(`  \x1b[90m·\x1b[0m ${msg}\n`);
+}
+function warn(msg) {
+    process.stdout.write(`  \x1b[33m!\x1b[0m ${msg}\n`);
+}
+function promptYesNo(rl, question, defaultYes = true) {
+    const hint = defaultYes ? '[Y/n]' : '[y/N]';
+    return new Promise(resolve => rl.question(`  ${question} ${hint}: `, answer => {
+        const t = answer.trim().toLowerCase();
+        resolve(!t ? defaultYes : t === 'y' || t === 'yes');
+    }));
+}
+function readJsonSafe(p) {
+    try {
+        return JSON.parse(fs.readFileSync(p, 'utf8'));
+    }
+    catch {
+        return null;
+    }
+}
+function isNirnexConfig(obj) {
+    // Recognise by shape: must have at least 3 of these nirnex-specific keys
+    const keys = ['specDirectory', 'criticalPathsFile', 'prompts', 'index', 'git', 'llm', 'hooks', 'sourceRoots', 'projectName'];
+    const present = keys.filter(k => k in obj).length;
+    return present >= 4;
+}
+function isDirEmpty(p) {
+    try {
+        return fs.readdirSync(p).length === 0;
+    }
+    catch {
+        return false;
+    }
+}
+function startsWith(content, prefix) {
+    return content.trimStart().startsWith(prefix);
+}
+// ─── Scanner ──────────────────────────────────────────────────────────────
+function scanRemovalTargets(cwd, opts) {
+    const actions = [];
+    const manualReview = [];
+    // 1. nirnex.config.json
+    const configPath = path.join(cwd, 'nirnex.config.json');
+    if (fs.existsSync(configPath)) {
+        const obj = readJsonSafe(configPath);
+        if (obj && isNirnexConfig(obj)) {
+            actions.push({
+                path: configPath,
+                type: 'delete_file',
+                confidence: 'high',
+                reason: 'Matches Nirnex config shape (created by nirnex setup)',
+                requiresConfirmation: false,
+            });
+        }
+        else {
+            manualReview.push(`${configPath} — exists but does not look like a Nirnex config; inspect manually`);
+        }
+    }
+    // 2. .aidos.db
+    const dbPath = path.join(cwd, '.aidos.db');
+    if (fs.existsSync(dbPath) && !opts.keepData) {
+        actions.push({
+            path: dbPath,
+            type: 'delete_file',
+            confidence: 'high',
+            reason: 'SQLite database created by nirnex index',
+            requiresConfirmation: false,
+        });
+    }
+    else if (fs.existsSync(dbPath) && opts.keepData) {
+        skip(`.aidos.db preserved (--keep-data)`);
+    }
+    // 3. .ai-index/
+    const aiIndexDir = path.join(cwd, '.ai-index');
+    if (fs.existsSync(aiIndexDir) && !opts.keepData) {
+        actions.push({
+            path: aiIndexDir,
+            type: 'delete_dir',
+            confidence: 'high',
+            reason: 'Runtime index directory created by nirnex setup',
+            requiresConfirmation: false,
+        });
+    }
+    else if (fs.existsSync(aiIndexDir) && opts.keepData) {
+        skip(`.ai-index/ preserved (--keep-data)`);
+    }
+    // 4. .ai/ — selective removal
+    const aiDir = path.join(cwd, '.ai');
+    if (fs.existsSync(aiDir)) {
+        if (opts.purgeData) {
+            // Full removal requested
+            actions.push({
+                path: aiDir,
+                type: 'delete_dir',
+                confidence: 'medium',
+                reason: 'Full .ai/ purge requested (--purge-data)',
+                requiresConfirmation: true,
+                preview: 'This will delete all files in .ai/ including any user-authored specs and calibration files.',
+            });
+        }
+        else if (!opts.keepData && !opts.keepSpecs) {
+            // Remove only default template files, preserve user content
+            scanAiDir(cwd, aiDir, actions, manualReview);
+        }
+        else {
+            skip(`.ai/ preserved (--keep-data or --keep-specs)`);
+        }
+    }
+    // 5. Git post-commit hook
+    if (!opts.keepData) {
+        const hookPath = path.join(cwd, '.git', 'hooks', 'post-commit');
+        if (fs.existsSync(hookPath)) {
+            try {
+                const content = fs.readFileSync(hookPath, 'utf8');
+                if (content === POST_COMMIT_EXACT) {
+                    actions.push({
+                        path: hookPath,
+                        type: 'delete_file',
+                        confidence: 'high',
+                        reason: 'Exact match to Nirnex post-commit hook template',
+                        requiresConfirmation: false,
+                    });
+                }
+                else if (content.includes(POST_COMMIT_LINE)) {
+                    // Mixed hook — patch only if manageable
+                    actions.push({
+                        path: hookPath,
+                        type: 'patch_hook',
+                        confidence: 'medium',
+                        reason: `Contains "nirnex index" alongside other commands — will remove only the Nirnex line`,
+                        preview: `Will remove the line: ${POST_COMMIT_LINE}`,
+                        requiresConfirmation: true,
+                    });
+                }
+                // else: hook exists but has no nirnex content — leave it alone
+            }
+            catch {
+                manualReview.push(`${hookPath} — could not read; inspect manually`);
+            }
+        }
+    }
+    // 6. Claude hook scripts
+    if (!opts.keepClaude) {
+        const claudeHooksDir = path.join(cwd, '.claude', 'hooks');
+        for (const [name, expectedContent] of Object.entries(NIRNEX_HOOK_SCRIPTS)) {
+            const p = path.join(claudeHooksDir, name);
+            if (fs.existsSync(p)) {
+                try {
+                    const content = fs.readFileSync(p, 'utf8');
+                    if (content === expectedContent) {
+                        actions.push({
+                            path: p,
+                            type: 'delete_file',
+                            confidence: 'high',
+                            reason: `Exact match to Nirnex hook template for ${name}`,
+                            requiresConfirmation: false,
+                        });
+                    }
+                    else {
+                        manualReview.push(`${p} — exists but content differs from Nirnex template; inspect manually`);
+                    }
+                }
+                catch {
+                    manualReview.push(`${p} — could not read; inspect manually`);
+                }
+            }
+        }
+    }
+    // 7. .claude/settings.json — surgical patch
+    if (!opts.keepClaude) {
+        const settingsPath = path.join(cwd, '.claude', 'settings.json');
+        if (fs.existsSync(settingsPath)) {
+            const obj = readJsonSafe(settingsPath);
+            if (obj && obj.hooks && hasNirnexHooks(obj.hooks)) {
+                actions.push({
+                    path: settingsPath,
+                    type: 'patch_json',
+                    confidence: 'low',
+                    reason: 'Contains Nirnex hook bindings — will remove only Nirnex entries, preserve all other settings',
+                    preview: buildSettingsPatchPreview(obj.hooks),
+                    requiresConfirmation: true,
+                });
+            }
+        }
+    }
+    // 8. .claude/ and .claude/hooks/ — remove if empty after file removal
+    // These are added dynamically during execution; see executeRemovalPlan.
+    return { cwd, actions, manualReview };
+}
+function scanAiDir(cwd, aiDir, actions, manualReview) {
+    const toCheck = [
+        { rel: 'critical-paths.txt', defaultPrefix: DEFAULT_CRITICAL_PATHS_PREFIX },
+        { rel: path.join('prompts', 'analyst.md'), defaultPrefix: DEFAULT_ANALYST_PREFIX },
+        { rel: path.join('prompts', 'implementer.md'), defaultPrefix: DEFAULT_IMPLEMENTER_PREFIX },
+        { rel: path.join('calibration', 'README.md'), defaultPrefix: DEFAULT_CALIBRATION_PREFIX },
+    ];
+    for (const { rel, defaultPrefix } of toCheck) {
+        const full = path.join(aiDir, rel);
+        if (!fs.existsSync(full))
+            continue;
+        try {
+            const content = fs.readFileSync(full, 'utf8');
+            if (startsWith(content, defaultPrefix)) {
+                actions.push({
+                    path: full,
+                    type: 'delete_file',
+                    confidence: 'medium',
+                    reason: `Default Nirnex template file (content matches setup default)`,
+                    requiresConfirmation: false,
+                });
+            }
+            else {
+                manualReview.push(`${full} — appears user-modified; not removed. Delete manually if not needed.`);
+            }
+        }
+        catch {
+            manualReview.push(`${full} — could not read; skipping`);
+        }
+    }
+    // Warn about specs/ — never auto-remove
+    const specsDir = path.join(aiDir, 'specs');
+    if (fs.existsSync(specsDir)) {
+        const entries = fs.readdirSync(specsDir).filter(e => e !== '.gitkeep');
+        if (entries.length > 0) {
+            manualReview.push(`.ai/specs/ contains ${entries.length} file(s) — preserved. Delete manually with: rm -rf .ai/specs`);
+        }
+    }
+}
+// ─── Settings JSON helpers ────────────────────────────────────────────────
+function isNirnexHookCommand(cmd) {
+    return typeof cmd === 'string' && NIRNEX_HOOK_COMMANDS.has(cmd);
+}
+function hasNirnexHooks(hooks) {
+    for (const stage of Object.values(hooks)) {
+        if (!Array.isArray(stage))
+            continue;
+        for (const entry of stage) {
+            if (!entry || typeof entry !== 'object')
+                continue;
+            const entryHooks = entry.hooks;
+            if (!Array.isArray(entryHooks))
+                continue;
+            for (const h of entryHooks) {
+                if (h && typeof h === 'object' && isNirnexHookCommand(h.command)) {
+                    return true;
+                }
+            }
+        }
+    }
+    return false;
+}
+function removeNirnexHooks(hooks) {
+    const cleaned = {};
+    for (const [stage, entries] of Object.entries(hooks)) {
+        if (!Array.isArray(entries)) {
+            cleaned[stage] = entries;
+            continue;
+        }
+        const patchedEntries = [];
+        for (const entry of entries) {
+            if (!entry || typeof entry !== 'object') {
+                patchedEntries.push(entry);
+                continue;
+            }
+            const e = entry;
+            const entryHooks = Array.isArray(e.hooks) ? e.hooks : [];
+            const filteredHooks = entryHooks.filter((h) => !(h && typeof h === 'object' && isNirnexHookCommand(h.command)));
+            if (filteredHooks.length > 0) {
+                patchedEntries.push({ ...e, hooks: filteredHooks });
+            }
+            // If no hooks remain in this entry, drop the entry entirely
+        }
+        if (patchedEntries.length > 0) {
+            cleaned[stage] = patchedEntries;
+        }
+        // If no entries remain for this stage, drop the stage entirely
+    }
+    return cleaned;
+}
+function buildSettingsPatchPreview(hooks) {
+    const removed = [];
+    for (const [stage, entries] of Object.entries(hooks)) {
+        if (!Array.isArray(entries))
+            continue;
+        for (const entry of entries) {
+            if (!entry || typeof entry !== 'object')
+                continue;
+            const entryHooks = entry.hooks;
+            if (!Array.isArray(entryHooks))
+                continue;
+            for (const h of entryHooks) {
+                if (h && typeof h === 'object' && isNirnexHookCommand(h.command)) {
+                    removed.push(`  ${stage} → ${h.command}`);
+                }
+            }
+        }
+    }
+    return `Will remove Nirnex hook bindings:\n${removed.join('\n')}`;
+}
+// ─── Executor ─────────────────────────────────────────────────────────────
+function executeAction(action) {
+    switch (action.type) {
+        case 'delete_file':
+            try {
+                fs.unlinkSync(action.path);
+                tick(`Removed ${path.relative(process.cwd(), action.path)}`);
+            }
+            catch (e) {
+                warn(`Failed to remove ${action.path}: ${e instanceof Error ? e.message : String(e)}`);
+            }
+            break;
+        case 'delete_dir':
+            try {
+                fs.rmSync(action.path, { recursive: true, force: true });
+                tick(`Removed ${path.relative(process.cwd(), action.path)}/`);
+            }
+            catch (e) {
+                warn(`Failed to remove ${action.path}: ${e instanceof Error ? e.message : String(e)}`);
+            }
+            break;
+        case 'patch_json': {
+            const backupPath = action.path + '.nirnex-backup';
+            try {
+                fs.copyFileSync(action.path, backupPath);
+                const obj = readJsonSafe(action.path);
+                if (!obj) {
+                    warn(`Could not parse ${action.path} — skipping patch`);
+                    fs.unlinkSync(backupPath);
+                    break;
+                }
+                const cleaned = { ...obj };
+                if (cleaned.hooks && typeof cleaned.hooks === 'object') {
+                    const patchedHooks = removeNirnexHooks(cleaned.hooks);
+                    if (Object.keys(patchedHooks).length === 0) {
+                        delete cleaned.hooks;
+                    }
+                    else {
+                        cleaned.hooks = patchedHooks;
+                    }
+                }
+                const result = JSON.stringify(cleaned, null, 2) + '\n';
+                fs.writeFileSync(action.path, result, 'utf8');
+                fs.unlinkSync(backupPath);
+                tick(`Patched ${path.relative(process.cwd(), action.path)} — Nirnex hooks removed`);
+            }
+            catch (e) {
+                warn(`Failed to patch ${action.path}: ${e instanceof Error ? e.message : String(e)}`);
+                // Restore backup if it exists
+                if (fs.existsSync(backupPath)) {
+                    try {
+                        fs.copyFileSync(backupPath, action.path);
+                        fs.unlinkSync(backupPath);
+                        warn(`  → Restored backup`);
+                    }
+                    catch { }
+                }
+            }
+            break;
+        }
+        case 'patch_hook': {
+            const backupPath = action.path + '.nirnex-backup';
+            try {
+                const content = fs.readFileSync(action.path, 'utf8');
+                fs.copyFileSync(action.path, backupPath);
+                const lines = content.split('\n');
+                const filtered = lines.filter(l => l.trim() !== POST_COMMIT_LINE);
+                // Clean up trailing blank lines left behind
+                while (filtered.length > 1 && filtered[filtered.length - 1].trim() === '') {
+                    filtered.pop();
+                }
+                filtered.push(''); // Ensure trailing newline
+                fs.writeFileSync(action.path, filtered.join('\n'), 'utf8');
+                fs.unlinkSync(backupPath);
+                tick(`Patched ${path.relative(process.cwd(), action.path)} — removed "nirnex index" line`);
+            }
+            catch (e) {
+                warn(`Failed to patch ${action.path}: ${e instanceof Error ? e.message : String(e)}`);
+                if (fs.existsSync(backupPath)) {
+                    try {
+                        fs.copyFileSync(backupPath, action.path);
+                        fs.unlinkSync(backupPath);
+                        warn(`  → Restored backup`);
+                    }
+                    catch { }
+                }
+            }
+            break;
+        }
+        case 'skip':
+            skip(`Skipped ${path.relative(process.cwd(), action.path)}`);
+            break;
+    }
+}
+function cleanupEmptyDirs(cwd) {
+    // Remove .claude/hooks/ if empty
+    const claudeHooksDir = path.join(cwd, '.claude', 'hooks');
+    if (fs.existsSync(claudeHooksDir) && isDirEmpty(claudeHooksDir)) {
+        try {
+            fs.rmdirSync(claudeHooksDir);
+            tick('Removed .claude/hooks/ (empty)');
+        }
+        catch { }
+    }
+    // Remove .claude/ if empty
+    const claudeDir = path.join(cwd, '.claude');
+    if (fs.existsSync(claudeDir) && isDirEmpty(claudeDir)) {
+        try {
+            fs.rmdirSync(claudeDir);
+            tick('Removed .claude/ (empty)');
+        }
+        catch { }
+    }
+    // Remove .ai/prompts/ if empty
+    const promptsDir = path.join(cwd, '.ai', 'prompts');
+    if (fs.existsSync(promptsDir) && isDirEmpty(promptsDir)) {
+        try {
+            fs.rmdirSync(promptsDir);
+            tick('Removed .ai/prompts/ (empty)');
+        }
+        catch { }
+    }
+    // Remove .ai/calibration/ if empty
+    const calibrationDir = path.join(cwd, '.ai', 'calibration');
+    if (fs.existsSync(calibrationDir) && isDirEmpty(calibrationDir)) {
+        try {
+            fs.rmdirSync(calibrationDir);
+            tick('Removed .ai/calibration/ (empty)');
+        }
+        catch { }
+    }
+    // Remove .ai/specs/ if empty
+    const specsDir = path.join(cwd, '.ai', 'specs');
+    if (fs.existsSync(specsDir) && isDirEmpty(specsDir)) {
+        try {
+            fs.rmdirSync(specsDir);
+            tick('Removed .ai/specs/ (empty)');
+        }
+        catch { }
+    }
+    // Remove .ai/ if empty
+    const aiDir = path.join(cwd, '.ai');
+    if (fs.existsSync(aiDir) && isDirEmpty(aiDir)) {
+        try {
+            fs.rmdirSync(aiDir);
+            tick('Removed .ai/ (empty)');
+        }
+        catch { }
+    }
+}
+// ─── Plan display ─────────────────────────────────────────────────────────
+function printPlan(plan, opts) {
+    const { actions, manualReview } = plan;
+    const cwd = plan.cwd;
+    if (actions.length === 0 && manualReview.length === 0) {
+        console.log('\n  No Nirnex artifacts found in this repository.\n');
+        return;
+    }
+    console.log('\n\x1b[1mRemoval plan:\x1b[0m\n');
+    const autoActions = actions.filter(a => !a.requiresConfirmation || opts.yes || opts.force);
+    const confirmActions = actions.filter(a => a.requiresConfirmation && !opts.yes && !opts.force);
+    if (autoActions.length > 0) {
+        console.log('  \x1b[1mWill remove:\x1b[0m');
+        for (const a of autoActions) {
+            const rel = path.relative(cwd, a.path);
+            const suffix = a.type === 'delete_dir' ? '/' : a.type === 'patch_json' || a.type === 'patch_hook' ? ' (patch)' : '';
+            console.log(`    \x1b[31m✖\x1b[0m ${rel}${suffix}`);
+            console.log(`      ${a.reason}`);
+        }
+        console.log('');
+    }
+    if (confirmActions.length > 0) {
+        console.log('  \x1b[1mRequires confirmation:\x1b[0m');
+        for (const a of confirmActions) {
+            const rel = path.relative(cwd, a.path);
+            const suffix = a.type === 'delete_dir' ? '/' : a.type === 'patch_json' || a.type === 'patch_hook' ? ' (patch)' : '';
+            console.log(`    \x1b[33m?\x1b[0m ${rel}${suffix}`);
+            console.log(`      ${a.reason}`);
+            if (a.preview) {
+                for (const line of a.preview.split('\n')) {
+                    console.log(`      \x1b[90m${line}\x1b[0m`);
+                }
+            }
+        }
+        console.log('');
+    }
+    if (manualReview.length > 0) {
+        console.log('  \x1b[1mPreserved (manual review):\x1b[0m');
+        for (const item of manualReview) {
+            const rel = item.replace(cwd + path.sep, '');
+            console.log(`    \x1b[90m·\x1b[0m ${rel}`);
+        }
+        console.log('');
+    }
+}
+function printJsonPlan(plan, _opts) {
+    const output = {
+        cwd: plan.cwd,
+        actions: plan.actions.map(a => ({
+            path: path.relative(plan.cwd, a.path),
+            type: a.type,
+            confidence: a.confidence,
+            reason: a.reason,
+            preview: a.preview,
+            requiresConfirmation: a.requiresConfirmation,
+        })),
+        manualReview: plan.manualReview.map(item => {
+            // Replace absolute path prefix with relative path
+            return item.replace(plan.cwd + path.sep, '');
+        }),
+    };
+    console.log(JSON.stringify(output, null, 2));
+}
+// ─── Main remove logic ────────────────────────────────────────────────────
+async function runRemove(cwd, opts) {
+    if (!opts.json) {
+        console.log('\n\x1b[1mNirnex Remove\x1b[0m\n');
+    }
+    // Quick check: is this even a Nirnex-enabled repo?
+    const configPath = path.join(cwd, 'nirnex.config.json');
+    const hasAiDir = fs.existsSync(path.join(cwd, '.ai'));
+    const hasClaudeHooks = fs.existsSync(path.join(cwd, '.claude', 'hooks', 'nirnex-bootstrap.sh'));
+    if (!fs.existsSync(configPath) && !hasAiDir && !hasClaudeHooks) {
+        if (!opts.json) {
+            console.log('  No Nirnex artifacts found in this directory.\n');
+        }
+        else {
+            console.log(JSON.stringify({ cwd, actions: [], manualReview: [], message: 'No Nirnex artifacts found' }));
+        }
+        return;
+    }
+    const plan = scanRemovalTargets(cwd, opts);
+    if (opts.dryRun) {
+        if (opts.json) {
+            printJsonPlan(plan, opts);
+        }
+        else {
+            printPlan(plan, opts);
+            console.log('  \x1b[33m[dry-run] No changes made.\x1b[0m\n');
+        }
+        return;
+    }
+    if (opts.json) {
+        printJsonPlan(plan, opts);
+        return;
+    }
+    if (plan.actions.length === 0) {
+        console.log('  No Nirnex artifacts to remove.\n');
+        if (plan.manualReview.length > 0) {
+            console.log('  Items for manual review:');
+            for (const item of plan.manualReview) {
+                console.log(`    · ${item}`);
+            }
+            console.log('');
+        }
+        return;
+    }
+    printPlan(plan, opts);
+    // Separate actions needing per-action confirmation
+    const immediateActions = plan.actions.filter(a => !a.requiresConfirmation);
+    const confirmActions = plan.actions.filter(a => a.requiresConfirmation);
+    // Global confirmation (unless --yes)
+    if (!opts.yes && !opts.force && immediateActions.length > 0) {
+        const rl = readline.createInterface({ input: process.stdin, output: process.stdout });
+        try {
+            const ok = await promptYesNo(rl, 'Proceed with removal?', true);
+            if (!ok) {
+                console.log('\n  Aborted. No changes made.\n');
+                return;
+            }
+        }
+        finally {
+            rl.close();
+        }
+        console.log('');
+    }
+    // Execute immediate (high-confidence, no per-action confirmation) actions
+    for (const action of immediateActions) {
+        executeAction(action);
+    }
+    // Handle actions needing individual confirmation
+    if (confirmActions.length > 0) {
+        if (opts.yes || opts.force) {
+            // Both --yes and --force auto-approve confirmation-requiring actions
+            for (const action of confirmActions) {
+                executeAction(action);
+            }
+        }
+        else {
+            const rl = readline.createInterface({ input: process.stdin, output: process.stdout });
+            try {
+                for (const action of confirmActions) {
+                    const rel = path.relative(cwd, action.path);
+                    console.log(`\n  \x1b[33m?\x1b[0m ${rel}`);
+                    console.log(`    ${action.reason}`);
+                    if (action.preview) {
+                        for (const line of action.preview.split('\n')) {
+                            console.log(`    \x1b[90m${line}\x1b[0m`);
+                        }
+                    }
+                    const ok = await promptYesNo(rl, '  Apply?', false);
+                    if (ok) {
+                        executeAction(action);
+                    }
+                    else {
+                        skip(`Skipped ${rel}`);
+                    }
+                }
+            }
+            finally {
+                rl.close();
+            }
+        }
+    }
+    // Clean up empty directories
+    cleanupEmptyDirs(cwd);
+    // Summary
+    console.log('\n\x1b[32m\x1b[1mDone.\x1b[0m');
+    if (plan.manualReview.length > 0) {
+        console.log('\n  Items preserved — review manually if needed:');
+        for (const item of plan.manualReview) {
+            const rel = item.replace(cwd + path.sep, '');
+            console.log(`    \x1b[90m·\x1b[0m ${rel}`);
+        }
+    }
+    console.log('');
+}
+// ─── Exported command ─────────────────────────────────────────────────────
+export { runRemove };
+export async function removeCommand(args) {
+    const opts = {
+        yes: args.includes('--yes') || args.includes('-y'),
+        dryRun: args.includes('--dry-run'),
+        force: args.includes('--force'),
+        keepData: args.includes('--keep-data'),
+        keepSpecs: args.includes('--keep-specs'),
+        keepClaude: args.includes('--keep-claude'),
+        purgeData: args.includes('--purge-data'),
+        json: args.includes('--json'),
+    };
+    const cwd = process.cwd();
+    await runRemove(cwd, opts);
+}
+//# sourceMappingURL=remove.js.map

package/dist/commands/remove.js.map

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package/dist/index.js

@@ -1,6 +1,7 @@
 #!/usr/bin/env node
 // Nirnex CLI — Decision Intelligence for software delivery
 // Usage: nirnex <command> [args]
+import { createRequire } from 'node:module';
 import { planCommand } from './commands/plan.js';
 import { queryCommand } from './commands/query.js';
 import { statusCommand } from './commands/status.js';
@@ -8,6 +9,7 @@ import { replayCommand } from './commands/replay.js';
 import { indexCommand } from './commands/index.js';
 import { traceCommand } from './commands/trace.js';
 import { setupCommand } from './commands/setup.js';
+import { removeCommand } from './commands/remove.js';
 import { runtimeCommand } from './commands/runtime.js';
 const [, , command = '', ...rest] = process.argv;
 const USAGE = `
@@ -15,6 +17,7 @@ Nirnex — Decision Intelligence for software delivery
 
 Usage:
   nirnex setup    [options]   Initialize Nirnex in this repository
+  nirnex remove   [options]   Safely detach Nirnex from this repository
   nirnex index    [options]   Index the codebase into the knowledge graph
   nirnex plan     [options]   Generate a delivery plan from a spec or query
   nirnex query    [options]   Query the knowledge graph
@@ -22,13 +25,25 @@ Usage:
   nirnex trace    [options]   View execution traces
   nirnex replay   [options]   Replay a past analysis run
   nirnex runtime  <sub>       Claude hook pipeline commands (machine-facing)
+  nirnex version              Print the installed version
 
 Run \`nirnex setup\` to get started.
 `.trimStart();
 switch (command) {
+    case 'version':
+    case '--version':
+    case '-v': {
+        const require = createRequire(import.meta.url);
+        const pkg = require('../package.json');
+        console.log(pkg.version);
+        break;
+    }
     case 'setup':
         setupCommand(rest).catch(console.error);
         break;
+    case 'remove':
+        removeCommand(rest).catch(console.error);
+        break;
     case 'index':
         indexCommand(rest);
         break;

package/dist/index.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@nirnex/cli",
-  "version": "4.0.0",
+  "version": "4.1.1",
   "description": "Nirnex CLI — Decision Intelligence for software delivery",
   "type": "module",
   "bin": {