@ninebix/nmt-system 1.0.2 → 1.0.4

package/dist/src/mcp/server.js

@@ -6,7 +6,60 @@
  */
 import { Server } from '@modelcontextprotocol/sdk/server/index.js';
 import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
-import { CallToolRequestSchema, ListToolsRequestSchema, ListResourcesRequestSchema, ReadResourceRequestSchema, } from '@modelcontextprotocol/sdk/types.js';
+import { CallToolRequestSchema, ListToolsRequestSchema, ListResourcesRequestSchema, ReadResourceRequestSchema, GetPromptRequestSchema, ListPromptsRequestSchema, } from '@modelcontextprotocol/sdk/types.js';
+// ============================================================
+// NMT System Instructions for AI Agents
+// ============================================================
+const NMT_SYSTEM_INSTRUCTIONS = `
+# NMT (Neuron Merkle Tree) - Verifiable Semantic Memory System
+
+You have access to NMT, a persistent semantic memory system that stores and retrieves information using neural embeddings and cryptographic verification.
+
+## When to Use NMT
+
+**USE NMT when:**
+- User wants to remember something for future sessions ("remember this", "save this for later")
+- You learn important information about the user (preferences, context, decisions)
+- User shares documents, code snippets, or knowledge worth preserving
+- You need to recall past conversations or stored knowledge
+- User asks "do you remember..." or "what did I tell you about..."
+
+**DON'T USE NMT for:**
+- Temporary information only needed in current conversation
+- Sensitive data (passwords, secrets, API keys)
+- Very short or trivial information
+
+## Tool Usage Patterns
+
+### Pattern 1: Save Important Information
+When user shares valuable information:
+1. Use \`nmt_save\` with appropriate tags
+2. Confirm storage with the returned neuronId
+
+### Pattern 2: Recall Past Knowledge
+When user asks about past information:
+1. Use \`nmt_search\` with semantic query (not exact keywords)
+2. Review results and synthesize relevant information
+3. If needed, use \`nmt_get\` for full content of specific neurons
+
+### Pattern 3: Build Knowledge Connections
+When information relates to existing knowledge:
+1. Use \`nmt_search\` to find related neurons
+2. Use \`nmt_connect\` to create semantic/causal links
+3. This helps future retrieval through association
+
+### Pattern 3: Verify Data Integrity
+When accuracy is critical:
+1. Use \`nmt_verify\` to check if data was tampered
+2. Merkle tree verification ensures cryptographic integrity
+
+## Best Practices
+
+1. **Tag wisely**: Use descriptive tags like ["user-preference", "coding-style"] or ["project-x", "architecture"]
+2. **Search semantically**: Query by meaning, not exact words. "coding habits" will find "programming preferences"
+3. **Connect related concepts**: Build a knowledge graph by linking neurons
+4. **Check stats periodically**: Use nmt_stats to monitor memory usage
+`.trim();
 import { ChunkEngine } from '../core/chunk-engine.js';
 import { MerkleEngine } from '../core/merkle-engine.js';
 import { HNSWIndex } from '../core/hnsw-index.js';
@@ -46,7 +99,9 @@ export class NMTMCPServer {
             capabilities: {
                 tools: {},
                 resources: {},
+                prompts: {},
             },
+            instructions: NMT_SYSTEM_INSTRUCTIONS,
         });
         this.setupHandlers();
     }
@@ -83,23 +138,73 @@ export class NMTMCPServer {
      * Setup MCP handlers
      */
     setupHandlers() {
-        // List available tools
+        // List prompts - provides system instructions and usage guides
+        this.server.setRequestHandler(ListPromptsRequestSchema, async () => ({
+            prompts: [
+                {
+                    name: 'nmt_guide',
+                    description: 'Complete guide for using NMT memory system effectively',
+                },
+                {
+                    name: 'nmt_quick_start',
+                    description: 'Quick start: basic save and search operations',
+                },
+            ],
+        }));
+        // Get prompt content
+        this.server.setRequestHandler(GetPromptRequestSchema, async (request) => {
+            const { name } = request.params;
+            if (name === 'nmt_guide') {
+                return {
+                    messages: [
+                        {
+                            role: 'user',
+                            content: { type: 'text', text: NMT_SYSTEM_INSTRUCTIONS },
+                        },
+                    ],
+                };
+            }
+            if (name === 'nmt_quick_start') {
+                return {
+                    messages: [
+                        {
+                            role: 'user',
+                            content: {
+                                type: 'text',
+                                text: `NMT Quick Start:
+1. Save: nmt_save(text="important info", tags=["category"])
+2. Search: nmt_search(query="what I saved about...")
+3. Get full content: nmt_get(neuronId="...")
+4. Verify integrity: nmt_verify(neuronId="...")`,
+                            },
+                        },
+                    ],
+                };
+            }
+            throw new Error(`Unknown prompt: ${name}`);
+        });
+        // List available tools with comprehensive descriptions
         this.server.setRequestHandler(ListToolsRequestSchema, async () => ({
             tools: [
                 {
                     name: 'nmt_save',
-                    description: '텍스트를 NMT에 저장합니다. 저장된 텍스트는 나중에 의미 검색으로 찾을 수 있습니다.',
+                    description: `Save text to persistent semantic memory. Use when:
+- User says "remember this", "save for later", "keep this in mind"
+- You learn important user preferences, decisions, or context
+- User shares documents, code, or knowledge worth preserving
+Returns a neuronId for future reference. Tags help with organization.
+Example: nmt_save(text="User prefers TypeScript over JavaScript", tags=["preference", "coding"])`,
                     inputSchema: {
                         type: 'object',
                         properties: {
                             text: {
                                 type: 'string',
-                                description: '저장할 텍스트',
+                                description: 'The text content to save. Can be any length - will be chunked automatically.',
                             },
                             tags: {
                                 type: 'array',
                                 items: { type: 'string' },
-                                description: '태그 목록 (선택사항)',
+                                description: 'Categorical tags for organization. Examples: ["project-x", "architecture"], ["user-preference", "ui"]',
                             },
                         },
                         required: ['text'],
@@ -107,17 +212,22 @@ export class NMTMCPServer {
                 },
                 {
                     name: 'nmt_search',
-                    description: '의미적으로 유사한 내용을 검색합니다. 키워드가 아닌 의미 기반 검색입니다.',
+                    description: `Semantic search across all stored memories. Use when:
+- User asks "do you remember...", "what did I tell you about..."
+- You need to recall past conversations or stored knowledge
+- Looking for related information before making decisions
+Searches by MEANING, not keywords. "coding preferences" finds "programming style choices".
+Example: nmt_search(query="user's favorite programming language", limit=5)`,
                     inputSchema: {
                         type: 'object',
                         properties: {
                             query: {
                                 type: 'string',
-                                description: '검색할 내용',
+                                description: 'Semantic search query. Describe what you are looking for by meaning, not exact words.',
                             },
                             limit: {
                                 type: 'number',
-                                description: '최대 결과 개수 (기본값: 10)',
+                                description: 'Maximum results to return (default: 10). Use lower values for focused searches.',
                             },
                         },
                         required: ['query'],
@@ -125,13 +235,14 @@ export class NMTMCPServer {
                 },
                 {
                     name: 'nmt_get',
-                    description: '특정 뉴런의 내용을 가져옵니다.',
+                    description: `Retrieve full content of a specific neuron by ID. Use after nmt_search to get complete text when the search result snippet is insufficient.
+Example: nmt_get(neuronId="abc-123-def")`,
                     inputSchema: {
                         type: 'object',
                         properties: {
                             neuronId: {
                                 type: 'string',
-                                description: '뉴런 ID',
+                                description: 'The neuron ID returned from nmt_save or nmt_search',
                             },
                         },
                         required: ['neuronId'],
@@ -139,13 +250,18 @@ export class NMTMCPServer {
                 },
                 {
                     name: 'nmt_verify',
-                    description: '데이터의 무결성을 검증합니다. 위변조 여부를 확인합니다.',
+                    description: `Cryptographically verify data integrity using Merkle tree proofs. Use when:
+- Data accuracy is critical (legal, financial, security contexts)
+- User questions if stored data was modified
+- Auditing or compliance requirements
+Returns valid:true if data is untampered.
+Example: nmt_verify(neuronId="abc-123-def")`,
                     inputSchema: {
                         type: 'object',
                         properties: {
                             neuronId: {
                                 type: 'string',
-                                description: '검증할 뉴런 ID',
+                                description: 'The neuron ID to verify for tampering',
                             },
                         },
                         required: ['neuronId'],
@@ -153,22 +269,27 @@ export class NMTMCPServer {
                 },
                 {
                     name: 'nmt_connect',
-                    description: '두 뉴런을 연결합니다.',
+                    description: `Create explicit connections between neurons to build a knowledge graph. Connection types:
+- semantic: conceptually related (e.g., "TypeScript" ↔ "JavaScript")
+- reference: one cites/mentions the other
+- temporal: time-based sequence (before/after)
+- causal: cause and effect relationship
+Example: nmt_connect(sourceId="abc", targetId="def", type="causal")`,
                     inputSchema: {
                         type: 'object',
                         properties: {
                             sourceId: {
                                 type: 'string',
-                                description: '시작 뉴런 ID',
+                                description: 'Source neuron ID (the "from" node)',
                             },
                             targetId: {
                                 type: 'string',
-                                description: '대상 뉴런 ID',
+                                description: 'Target neuron ID (the "to" node)',
                             },
                             type: {
                                 type: 'string',
                                 enum: ['semantic', 'reference', 'temporal', 'causal'],
-                                description: '연결 유형',
+                                description: 'The type of relationship between neurons',
                             },
                         },
                         required: ['sourceId', 'targetId', 'type'],
@@ -176,17 +297,18 @@ export class NMTMCPServer {
                 },
                 {
                     name: 'nmt_related',
-                    description: '특정 뉴런과 연결된 관련 뉴런들을 찾습니다.',
+                    description: `Find neurons semantically related to a given neuron. Useful for exploring the knowledge graph and discovering connections.
+Example: nmt_related(neuronId="abc-123", depth=2)`,
                     inputSchema: {
                         type: 'object',
                         properties: {
                             neuronId: {
                                 type: 'string',
-                                description: '뉴런 ID',
+                                description: 'The neuron ID to find related content for',
                             },
                             depth: {
                                 type: 'number',
-                                description: '탐색 깊이 (기본값: 2)',
+                                description: 'How many connection hops to traverse (default: 2)',
                             },
                         },
                         required: ['neuronId'],
@@ -194,7 +316,8 @@ export class NMTMCPServer {
                 },
                 {
                     name: 'nmt_stats',
-                    description: 'NMT 시스템 통계를 가져옵니다.',
+                    description: `Get current NMT system statistics including neuron count, connections, and storage usage. Useful for monitoring memory growth.
+Example: nmt_stats()`,
                     inputSchema: {
                         type: 'object',
                         properties: {},
@@ -202,13 +325,17 @@ export class NMTMCPServer {
                 },
                 {
                     name: 'nmt_cluster',
-                    description: '저장된 뉴런들을 클러스터링합니다.',
+                    description: `Group neurons into semantic clusters using K-means. Useful for:
+- Discovering themes in stored knowledge
+- Organizing large amounts of information
+- Finding unexpected connections
+Example: nmt_cluster(k=5) groups all neurons into 5 semantic clusters`,
                     inputSchema: {
                         type: 'object',
                         properties: {
                             k: {
                                 type: 'number',
-                                description: '클러스터 개수',
+                                description: 'Number of clusters to create. Start with 3-5 for small datasets.',
                             },
                         },
                         required: ['k'],
@@ -387,7 +514,8 @@ export class NMTMCPServer {
                     }
                     case 'nmt_related': {
                         const { neuronId, depth = 2 } = args;
-                        const results = await this.queryService.searchSimilarTo(neuronId, { k: 10 });
+                        // depth used to scale result count (more depth = more results to explore)
+                        const results = await this.queryService.searchSimilarTo(neuronId, { k: 5 * depth });
                         return {
                             content: [
                                 {
@@ -480,15 +608,21 @@ export class NMTMCPServer {
         await this.indexStore.close();
     }
 }
-// Main entry point
-const server = new NMTMCPServer(process.env.NMT_DATA_DIR || './data');
-server.start().catch((error) => {
-    console.error('Failed to start NMT MCP Server:', error);
-    process.exit(1);
-});
-// Handle shutdown
-process.on('SIGINT', async () => {
-    await server.close();
-    process.exit(0);
-});
+// Auto-start only when run directly (not imported)
+// Check if this module is the main entry point
+const isMainModule = import.meta.url === `file://${process.argv[1].replace(/\\/g, '/')}` ||
+    process.argv[1]?.endsWith('server.js') ||
+    process.argv[1]?.endsWith('server.ts');
+if (isMainModule) {
+    const server = new NMTMCPServer(process.env.NMT_DATA_DIR || './data');
+    server.start().catch((error) => {
+        console.error('Failed to start NMT MCP Server:', error);
+        process.exit(1);
+    });
+    // Handle shutdown
+    process.on('SIGINT', async () => {
+        await server.close();
+        process.exit(0);
+    });
+}
 //# sourceMappingURL=server.js.map

package/dist/src/mcp/server.js.map

@@ -1 +1 @@
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package/dist/src/services/four-stage-learning.d.ts

@@ -244,6 +244,20 @@ export declare class FourStageLearningSystem extends EventEmitter {
      * End current learning session
      */
     endSession(): LearningSession | null;
+    /**
+     * Clear session data to free memory
+     * Call this after endSession() or when you need to reset state
+     */
+    clearSessionData(): void;
+    /**
+     * Get current memory usage stats
+     */
+    getMemoryStats(): {
+        extracts: number;
+        patterns: number;
+        processes: number;
+        outcomes: number;
+    };
     /**
      * Stage 1: Extract meaningful content from a neuron.
      *
@@ -434,6 +448,11 @@ export declare class FourStageLearningSystem extends EventEmitter {
      */
     configureEmbeddingProvider(config: Partial<EmbeddingProviderConfig>): void;
     private extractKeywords;
+    /**
+     * Cluster extracts using optimized K-means style algorithm
+     * Complexity: O(k * n * d) instead of O(n²)
+     * Where k = number of clusters, n = number of extracts, d = embedding dimension
+     */
     private clusterExtracts;
     private findSimilarPattern;
     private calculateCentroid;

package/dist/src/services/four-stage-learning.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"four-stage-learning.d.ts","sourceRoot":"","sources":["../../../src/services/four-stage-learning.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AAEH,OAAO,EAAE,YAAY,EAAE,MAAM,QAAQ,CAAC;AACtC,OAAO,KAAK,EACV,IAAI,EAGJ,YAAY,EACZ,YAAY,EACb,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAG7D,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,mCAAmC,CAAC;AAC5E,OAAO,EAAwB,KAAK,uBAAuB,EAAE,MAAM,qBAAqB,CAAC;AAEzF;;GAEG;AACH,MAAM,MAAM,aAAa,GAAG,SAAS,GAAG,UAAU,GAAG,SAAS,GAAG,UAAU,CAAC;AAE5E;;GAEG;AACH,MAAM,WAAW,iBAAiB;IAChC,EAAE,EAAE,IAAI,CAAC;IACT,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,YAAY,CAAC;IACxB,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,EAAE,MAAM,CAAC;IACjB,cAAc,EAAE,IAAI,CAAC;IACrB,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAED;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,EAAE,EAAE,IAAI,CAAC;IACT,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,IAAI,EAAE,CAAC;IAClB,QAAQ,EAAE,YAAY,CAAC;IACvB,SAAS,EAAE,MAAM,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED;;GAEG;AACH,MAAM,WAAW,WAAW;IAC1B,UAAU,EAAE,MAAM,CAAC;IACnB,MAAM,EAAE,MAAM,CAAC;IACf,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,OAAO,CAAC;CAClB;AAED;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,EAAE,EAAE,IAAI,CAAC;IACT,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;IACjB,KAAK,EAAE,WAAW,EAAE,CAAC;IACrB,YAAY,EAAE,IAAI,CAAC;IACnB,aAAa,CAAC,EAAE,IAAI,CAAC;IACrB,WAAW,EAAE,MAAM,CAAC;IACpB,eAAe,EAAE,MAAM,CAAC;IACxB,eAAe,EAAE,MAAM,CAAC;IACxB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;CACnB;AAED;;GAEG;AACH,MAAM,WAAW,aAAa;IAC5B,EAAE,EAAE,IAAI,CAAC;IACT,SAAS,EAAE,IAAI,CAAC;IAChB,aAAa,EAAE,IAAI,CAAC;IACpB,cAAc,CAAC,EAAE,IAAI,CAAC;IACtB,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;CACnB;AAED;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B,EAAE,EAAE,IAAI,CAAC;IACT,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE;QACN,OAAO,EAAE,iBAAiB,EAAE,CAAC;QAC7B,QAAQ,EAAE,cAAc,EAAE,CAAC;QAC3B,SAAS,EAAE,cAAc,EAAE,CAAC;QAC5B,QAAQ,EAAE,aAAa,EAAE,CAAC;KAC3B,CAAC;IACF,OAAO,EAAE;QACP,aAAa,EAAE,MAAM,CAAC;QACtB,kBAAkB,EAAE,MAAM,CAAC;QAC3B,gBAAgB,EAAE,MAAM,CAAC;QACzB,cAAc,EAAE,MAAM,CAAC;KACxB,CAAC;CACH;AAED;;GAEG;AACH,MAAM,WAAW,wBAAwB;IACvC,WAAW,EAAE,YAAY,CAAC;IAC1B,YAAY,EAAE,kBAAkB,CAAC;IACjC,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,qBAAqB,CAAC,EAAE,OAAO,CAAC;IAChC,uCAAuC;IACvC,eAAe,CAAC,EAAE,OAAO,CAAC,uBAAuB,CAAC,CAAC;IACnD,0DAA0D;IAC1D,iBAAiB,CAAC,EAAE,OAAO,CAAC;CAC7B;AAED;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC,iBAAiB;IACjB,SAAS,EAAE,IAAI,CAAC;IAChB,6BAA6B;IAC7B,KAAK,EAAE,aAAa,CAAC;IACrB,yBAAyB;IACzB,OAAO,EAAE,MAAM,CAAC;IAChB,6BAA6B;IAC7B,KAAK,EAAE,MAAM,CAAC;IACd,kCAAkC;IAClC,UAAU,EAAE,MAAM,CAAC;IACnB,8BAA8B;IAC9B,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,oBAAoB;IACpB,IAAI,CAAC,EAAE,OAAO,CAAC;CAChB;AAED;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,eAAe,EAAE,eAAe,CAAC;IACjC,aAAa,EAAE,eAAe,CAAC;IAC/B,UAAU,EAAE,qBAAqB,CAAC;IAClC,SAAS,EAAE,iBAAiB,CAAC;IAC7B,SAAS,EAAE,cAAc,CAAC;IAC1B,SAAS,EAAE,cAAc,CAAC;IAC1B,SAAS,EAAE,aAAa,CAAC;IACzB,OAAO,EAAE;QAAE,SAAS,CAAC,EAAE,IAAI,CAAC;QAAC,KAAK,EAAE,KAAK,CAAC;QAAC,KAAK,CAAC,EAAE,aAAa,CAAA;KAAE,CAAC;CACpE;AAED;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAyCG;AACH,qBAAa,uBAAwB,SAAQ,YAAY;IACvD,OAAO,CAAC,KAAK,CAAe;IAC5B,OAAO,CAAC,YAAY,CAAqB;IACzC,OAAO,CAAC,mBAAmB,CAAS;IACpC,OAAO,CAAC,mBAAmB,CAAS;IACpC,OAAO,CAAC,sBAAsB,CAAU;IAGxC,OAAO,CAAC,gBAAgB,CAAuB;IAC/C,OAAO,CAAC,iBAAiB,CAAU;IAGnC,OAAO,CAAC,QAAQ,CAA2C;IAC3D,OAAO,CAAC,QAAQ,CAAwC;IACxD,OAAO,CAAC,SAAS,CAAwC;IACzD,OAAO,CAAC,QAAQ,CAAuC;IAGvD,OAAO,CAAC,cAAc,CAAgC;IAGtD,OAAO,CAAC,gBAAgB,CAAmC;IAC3D,OAAO,CAAC,mBAAmB,CAA+B;IAC1D,OAAO,CAAC,kBAAkB,CAAkB;gBAEhC,OAAO,EAAE,wBAAwB;IAiB7C;;;;;;;;;;;;;;OAcG;IACH,YAAY,IAAI,eAAe;IAsB/B;;OAEG;IACH,OAAO,CAAC,YAAY;IAsBpB;;OAEG;IACH,UAAU,IAAI,eAAe,GAAG,IAAI;IAgCpC;;;OAGG;IACH,gBAAgB,IAAI,IAAI;IAgBxB;;OAEG;IACH,cAAc,IAAI;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAA;KAAE;IAW7F;;;;;;;;;;;;;;;;;;;;;OAqBG;IACG,iBAAiB,CACrB,QAAQ,EAAE,IAAI,EACd,OAAO,EAAE,MAAM,GACd,OAAO,CAAC,iBAAiB,EAAE,CAAC;IA+C/B;;;;;;;;;;;;;;;;;;;;;OAqBG;IACG,aAAa,CACjB,UAAU,EAAE,IAAI,EAAE,GACjB,OAAO,CAAC,cAAc,EAAE,CAAC;IAgE5B;;;;;;;;;;;;;;;;;;;;;;;OAuBG;IACG,YAAY,CAChB,QAAQ,EAAE,MAAM,EAChB,KAAK,EAAE,WAAW,EAAE,EACpB,cAAc,CAAC,EAAE,IAAI,GACpB,OAAO,CAAC,cAAc,GAAG,IAAI,CAAC;IA+CjC;;;;;;;;;;;;;;;;;;;;;;;;;;OA0BG;IACG,YAAY,CAChB,SAAS,EAAE,IAAI,EACf,aAAa,EAAE,IAAI,EACnB,cAAc,EAAE,IAAI,GAAG,SAAS,EAChC,OAAO,EAAE,OAAO,EAChB,OAAO,EAAE,MAAM,EACf,QAAQ,CAAC,EAAE,MAAM,GAChB,OAAO,CAAC,aAAa,CAAC;IAmCzB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;OA+BG;IACG,oBAAoB,CACxB,aAAa,EAAE,IAAI,EACnB,YAAY,EAAE,MAAM,EACpB,YAAY,EAAE,WAAW,EAAE,EAC3B,cAAc,CAAC,EAAE,IAAI,EACrB,aAAa,CAAC,EAAE,MAAM,EACtB,OAAO,CAAC,EAAE,OAAO,EACjB,OAAO,CAAC,EAAE,MAAM,GACf,OAAO,CAAC;QACT,QAAQ,EAAE,iBAAiB,EAAE,CAAC;QAC9B,QAAQ,EAAE,cAAc,EAAE,CAAC;QAC3B,OAAO,EAAE,cAAc,GAAG,IAAI,CAAC;QAC/B,OAAO,EAAE,aAAa,GAAG,IAAI,CAAC;KAC/B,CAAC;IA4CF;;OAEG;IACG,oBAAoB,CACxB,cAAc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package/dist/src/services/four-stage-learning.js

@@ -169,8 +169,39 @@ export class FourStageLearningSystem extends EventEmitter {
                 this.emit('error', { error: err });
             });
         }
+        // Memory cleanup: clear session-specific data to prevent memory leaks
+        // This is important for long-running processes
+        this.clearSessionData();
         return session;
     }
+    /**
+     * Clear session data to free memory
+     * Call this after endSession() or when you need to reset state
+     */
+    clearSessionData() {
+        const previousSizes = {
+            extracts: this.extracts.size,
+            patterns: this.patterns.size,
+            processes: this.processes.size,
+            outcomes: this.outcomes.size
+        };
+        this.extracts.clear();
+        this.patterns.clear();
+        this.processes.clear();
+        this.outcomes.clear();
+        this.emit('memory:cleared', previousSizes);
+    }
+    /**
+     * Get current memory usage stats
+     */
+    getMemoryStats() {
+        return {
+            extracts: this.extracts.size,
+            patterns: this.patterns.size,
+            processes: this.processes.size,
+            outcomes: this.outcomes.size
+        };
+    }
     // ==================== Stage 1: Extract Meaningful ====================
     /**
      * Stage 1: Extract meaningful content from a neuron.
@@ -682,27 +713,92 @@ export class FourStageLearningSystem extends EventEmitter {
         ]);
         return words.filter(w => !stopwords.has(w)).slice(0, 10);
     }
-    clusterExtracts(extracts) {
-        // Simple greedy clustering by similarity
-        const clusters = [];
-        const assigned = new Set();
-        for (const extract of extracts) {
-            if (assigned.has(extract.id))
-                continue;
-            const cluster = [extract];
-            assigned.add(extract.id);
-            for (const other of extracts) {
-                if (assigned.has(other.id))
+    /**
+     * Cluster extracts using optimized K-means style algorithm
+     * Complexity: O(k * n * d) instead of O(n²)
+     * Where k = number of clusters, n = number of extracts, d = embedding dimension
+     */
+    clusterExtracts(extracts, similarityThreshold = 0.7) {
+        if (extracts.length === 0)
+            return [];
+        if (extracts.length === 1)
+            return [[extracts[0]]];
+        // Phase 1: Initialize clusters with well-separated seeds
+        // Use farthest-first traversal to select initial centroids - O(k*n)
+        const k = Math.min(Math.ceil(Math.sqrt(extracts.length)), // sqrt(n) clusters
+        Math.ceil(extracts.length / 3) // at least 3 items per cluster
+        );
+        const centroids = [];
+        const centroidIndices = [];
+        // First centroid: random (use first element)
+        centroids.push(extracts[0].embedding);
+        centroidIndices.push(0);
+        // Remaining centroids: farthest from existing centroids
+        for (let i = 1; i < k; i++) {
+            let maxMinDist = -1;
+            let farthestIdx = 0;
+            for (let j = 0; j < extracts.length; j++) {
+                if (centroidIndices.includes(j))
                     continue;
-                const similarity = cosineSimilarity(extract.embedding, other.embedding);
-                if (similarity > 0.7) {
-                    cluster.push(other);
-                    assigned.add(other.id);
+                // Find minimum distance to any existing centroid
+                let minDist = Infinity;
+                for (const centroid of centroids) {
+                    const sim = cosineSimilarity(extracts[j].embedding, centroid);
+                    const dist = 1 - sim;
+                    if (dist < minDist)
+                        minDist = dist;
+                }
+                if (minDist > maxMinDist) {
+                    maxMinDist = minDist;
+                    farthestIdx = j;
+                }
+            }
+            centroids.push(extracts[farthestIdx].embedding);
+            centroidIndices.push(farthestIdx);
+        }
+        // Phase 2: Assign each extract to nearest centroid - O(k*n)
+        const clusters = Array.from({ length: k }, () => []);
+        const assignments = new Map();
+        for (const extract of extracts) {
+            let bestCluster = 0;
+            let bestSimilarity = -1;
+            for (let i = 0; i < centroids.length; i++) {
+                const sim = cosineSimilarity(extract.embedding, centroids[i]);
+                if (sim > bestSimilarity) {
+                    bestSimilarity = sim;
+                    bestCluster = i;
+                }
+            }
+            // Only assign if similarity meets threshold
+            if (bestSimilarity >= similarityThreshold) {
+                clusters[bestCluster].push(extract);
+                assignments.set(extract.id, bestCluster);
+            }
+            else {
+                // Create new single-item cluster for outliers
+                clusters.push([extract]);
+            }
+        }
+        // Phase 3: Refine centroids and reassign (1 iteration) - O(k*n)
+        const refinedCentroids = clusters
+            .filter(c => c.length > 0)
+            .map(cluster => this.calculateCentroid(cluster.map(e => e.embedding)));
+        // Final assignment with refined centroids
+        const finalClusters = Array.from({ length: refinedCentroids.length }, () => []);
+        for (const extract of extracts) {
+            let bestCluster = 0;
+            let bestSimilarity = -1;
+            for (let i = 0; i < refinedCentroids.length; i++) {
+                const sim = cosineSimilarity(extract.embedding, refinedCentroids[i]);
+                if (sim > bestSimilarity) {
+                    bestSimilarity = sim;
+                    bestCluster = i;
                 }
             }
-            clusters.push(cluster);
+            finalClusters[bestCluster].push(extract);
         }
-        return clusters;
+        // Remove empty clusters
+        return finalClusters.filter(c => c.length > 0);
     }
     findSimilarPattern(cluster) {
         const centroid = this.calculateCentroid(cluster.map(e => e.embedding));