@nfdi4plants/arctrl 3.1.0 → 3.1.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. package/dist/ts/ts/CWL/CWLTypes.d.ts +162 -45
  2. package/dist/ts/ts/CWL/CWLTypes.d.ts.map +1 -1
  3. package/dist/ts/ts/CWL/CWLTypes.js +495 -104
  4. package/dist/ts/ts/CWL/Decode.d.ts +291 -48
  5. package/dist/ts/ts/CWL/Decode.d.ts.map +1 -1
  6. package/dist/ts/ts/CWL/Decode.js +911 -568
  7. package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts +37 -0
  8. package/dist/ts/ts/CWL/DynamicObjHelpers.d.ts.map +1 -0
  9. package/dist/ts/ts/CWL/DynamicObjHelpers.js +57 -0
  10. package/dist/ts/ts/CWL/Encode.d.ts +117 -2
  11. package/dist/ts/ts/CWL/Encode.d.ts.map +1 -1
  12. package/dist/ts/ts/CWL/Encode.js +399 -163
  13. package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts +2 -0
  14. package/dist/ts/ts/CWL/ExpressionToolDescription.d.ts.map +1 -1
  15. package/dist/ts/ts/CWL/ExpressionToolDescription.js +7 -0
  16. package/dist/ts/ts/CWL/Inputs.d.ts +65 -14
  17. package/dist/ts/ts/CWL/Inputs.d.ts.map +1 -1
  18. package/dist/ts/ts/CWL/Inputs.js +194 -51
  19. package/dist/ts/ts/CWL/OperationDescription.d.ts +2 -0
  20. package/dist/ts/ts/CWL/OperationDescription.d.ts.map +1 -1
  21. package/dist/ts/ts/CWL/OperationDescription.js +7 -0
  22. package/dist/ts/ts/CWL/Outputs.d.ts +51 -12
  23. package/dist/ts/ts/CWL/Outputs.d.ts.map +1 -1
  24. package/dist/ts/ts/CWL/Outputs.js +152 -76
  25. package/dist/ts/ts/CWL/ParameterReference.d.ts +4 -1
  26. package/dist/ts/ts/CWL/ParameterReference.d.ts.map +1 -1
  27. package/dist/ts/ts/CWL/ParameterReference.js +17 -6
  28. package/dist/ts/ts/CWL/Requirements.d.ts +140 -51
  29. package/dist/ts/ts/CWL/Requirements.d.ts.map +1 -1
  30. package/dist/ts/ts/CWL/Requirements.js +458 -128
  31. package/dist/ts/ts/CWL/ToolDescription.d.ts +27 -2
  32. package/dist/ts/ts/CWL/ToolDescription.d.ts.map +1 -1
  33. package/dist/ts/ts/CWL/ToolDescription.js +74 -4
  34. package/dist/ts/ts/CWL/WorkflowDescription.d.ts +2 -0
  35. package/dist/ts/ts/CWL/WorkflowDescription.d.ts.map +1 -1
  36. package/dist/ts/ts/CWL/WorkflowDescription.js +7 -0
  37. package/dist/ts/ts/CWL/WorkflowSteps.d.ts +50 -19
  38. package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map +1 -1
  39. package/dist/ts/ts/CWL/WorkflowSteps.js +152 -23
  40. package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -1
  41. package/dist/ts/ts/ContractIO/ContractIO.js +4 -1
  42. package/dist/ts/ts/Conversion/Assay.d.ts.map +1 -1
  43. package/dist/ts/ts/Conversion/Assay.js +4 -3
  44. package/dist/ts/ts/Conversion/Investigation.js +2 -2
  45. package/dist/ts/ts/Conversion/Person.d.ts +1 -1
  46. package/dist/ts/ts/Conversion/Person.d.ts.map +1 -1
  47. package/dist/ts/ts/Conversion/Person.js +27 -11
  48. package/dist/ts/ts/Conversion/Run.d.ts.map +1 -1
  49. package/dist/ts/ts/Conversion/Run.js +3 -2
  50. package/dist/ts/ts/Conversion/ScholarlyArticle.d.ts.map +1 -1
  51. package/dist/ts/ts/Conversion/ScholarlyArticle.js +2 -1
  52. package/dist/ts/ts/Conversion/Study.d.ts.map +1 -1
  53. package/dist/ts/ts/Conversion/Study.js +5 -4
  54. package/dist/ts/ts/Conversion/Workflow.d.ts.map +1 -1
  55. package/dist/ts/ts/Conversion/Workflow.js +13 -12
  56. package/dist/ts/ts/Conversion.d.ts +14 -10
  57. package/dist/ts/ts/Conversion.d.ts.map +1 -1
  58. package/dist/ts/ts/Conversion.js +18 -11
  59. package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -1
  60. package/dist/ts/ts/Core/ArcTypes.js +18 -0
  61. package/dist/ts/ts/Json.d.ts +2 -2
  62. package/dist/ts/ts/Json.d.ts.map +1 -1
  63. package/dist/ts/ts/Json.js +3 -3
  64. package/dist/ts/ts/WorkflowGraph/ReferenceParsing.d.ts.map +1 -1
  65. package/dist/ts/ts/WorkflowGraph/ReferenceParsing.js +2 -1
  66. package/dist/ts/ts/Yaml/ValidationPackage.d.ts +1 -1
  67. package/dist/ts/ts/Yaml/ValidationPackage.d.ts.map +1 -1
  68. package/dist/ts/ts/Yaml/ValidationPackage.js +5 -5
  69. package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts +1 -1
  70. package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts.map +1 -1
  71. package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +5 -5
  72. package/dist/ts/ts/Yaml.js +1 -1
  73. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.7 → YAMLicious.1.0.0-alpha.11}/Decode.fs.js +5 -33
  74. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.7 → YAMLicious.1.0.0-alpha.11}/Persil.fs.js +11 -159
  75. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Preprocessing.fs.js +319 -0
  76. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Reader.fs.js +1867 -0
  77. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.7 → YAMLicious.1.0.0-alpha.11}/Regex.fs.js +1 -1
  78. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.7 → YAMLicious.1.0.0-alpha.11}/RegexActivePatterns.fs.js +2 -2
  79. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.11/Syntax.fs.js +819 -0
  80. package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.7 → YAMLicious.1.0.0-alpha.11}/Writer.fs.js +75 -48
  81. package/package.json +1 -1
  82. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.7/FlowToBlock.fs.js +0 -956
  83. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.7/Preprocessing.fs.js +0 -181
  84. package/dist/ts/ts/fable_modules/YAMLicious.1.0.0-alpha.7/Reader.fs.js +0 -1493
  85. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.7 → YAMLicious.1.0.0-alpha.11}/Encode.fs.js +0 -0
  86. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.7 → YAMLicious.1.0.0-alpha.11}/Escapes.fs.js +0 -0
  87. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.7 → YAMLicious.1.0.0-alpha.11}/Interop/JsInterop.fs.js +0 -0
  88. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.7 → YAMLicious.1.0.0-alpha.11}/StringBuffer.fs.js +0 -0
  89. /package/dist/ts/ts/fable_modules/{YAMLicious.1.0.0-alpha.7 → YAMLicious.1.0.0-alpha.11}/YAMLiciousTypes.fs.js +0 -0
@@ -97,7 +97,10 @@ function fulfillWriteContractAsync(forceOverwrite, basePath, c) {
97
97
  let arg_5;
98
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  return FSharpResult$2_Error((arg_5 = e_1.message, toText(printf("Error writing contract %s: %s"))(c.Path)(arg_5)));
99
99
  }, PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => PromiseBuilder__Delay_62FBFDE1(promise, () => fileExistsAsync(combine(basePath, c.Path)).then((_arg) => {
100
- if (_arg && !forceOverwrite) {
100
+ const exists = _arg;
101
+ if (exists && c.Path.endsWith(".gitkeep")) {
102
+ return Promise.resolve(FSharpResult$2_Ok(c));
103
+ } else if (exists && !forceOverwrite) {
101
104
  return Promise.resolve(FSharpResult$2_Error(toText(printf("Contract %s already exists and overwrite is not allowed"))(c.Path)));
102
105
  } else {
103
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  const matchValue = c.DTO;
@@ -1 +1 @@
1
- {"version":3,"file":"Assay.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Assay.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAKzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAUpD,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAGzD,qBAAa,eAAe;;CAG3B;AAED,wBAAgB,2BAA2B,IAAI,QAAQ,CAEtD;AAED,wBAAgB,kDAAkD,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,mBAAmB,CAAC,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,EAAE,CAkBtK;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAY/F;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAWtH"}
1
+ {"version":3,"file":"Assay.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Assay.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAKzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAGpD,OAAO,EAAE,QAAQ,EAAoB,MAAM,qBAAqB,CAAC;AAQjE,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAGzD,qBAAa,eAAe;;CAG3B;AAED,wBAAgB,2BAA2B,IAAI,QAAQ,CAEtD;AAED,wBAAgB,kDAAkD,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,mBAAmB,CAAC,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,EAAE,CAkBtK;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAa/F;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAWtH"}
@@ -7,12 +7,12 @@ import { DataAux_pathAndSelectorFromName } from '../Core/Data.js';
7
7
  import { LDFile } from '../ROCrate/LDTypes/File.js';
8
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  import { LDDataset } from '../ROCrate/LDTypes/Dataset.js';
9
9
  import { BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_composePropertyValueFromOA_ZDED3A0F, BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeDefinedTerm_Z2F770004, BaseTypes_decomposePropertyValueToOA_Z2F770004, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
10
- import { PersonConversion_composePerson_Z64D846DC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
10
+ import { ArcAssay } from '../Core/ArcTypes.js';
11
+ import { PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
11
12
  import { ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586 } from './Table.js';
12
13
  import { ArcTables } from '../Core/Table/ArcTables.js';
13
14
  import { DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
14
15
  import { Datamap } from '../Core/Datamap.js';
15
- import { ArcAssay } from '../Core/ArcTypes.js';
16
16
  import { ofSeq } from '../../node_modules/@fable-org/fable-library-js/List.js';
17
17
 
18
18
  class AssayConversion {
@@ -45,7 +45,8 @@ function AssayConversion_composeAssay_Z5C53FD5C(assay, fs) {
45
45
  const measurementMethod = map(BaseTypes_composeDefinedTerm_ZDED3A0F, assay.TechnologyType);
46
46
  const measurementTechnique = map(BaseTypes_composeDefinedTerm_ZDED3A0F, assay.TechnologyPlatform);
47
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  const variableMeasured = map(BaseTypes_composePropertyValueFromOA_ZDED3A0F, assay.MeasurementType);
48
- const creators = Option_fromSeq(ResizeArray_map(PersonConversion_composePerson_Z64D846DC, assay.Performers));
48
+ const persons = map((i) => i.GetAllPersons(), assay.Investigation);
49
+ const creators = Option_fromSeq(ResizeArray_map((c) => PersonConversion_composePerson_2B0BECCC(c, unwrap(persons)), assay.Performers));
49
50
  const processSequence = Option_fromSeq((collection = ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C(new ArcTables(assay.Tables), assay.Identifier, void 0, unwrap(fs)), Array.from(collection)));
50
51
  const fragmentDescriptors = map(DatamapConversion_composeFragmentDescriptors_Z892BFC3, assay.Datamap);
51
52
  const dataFiles = map((ps) => AssayConversion_getDataFilesFromProcesses_6BABD1B0(ps, unwrap(fragmentDescriptors)), processSequence);
@@ -4,7 +4,7 @@ import { tryFromString, toString } from './DateTime.js';
4
4
  import { now } from '../../node_modules/@fable-org/fable-library-js/Date.js';
5
5
  import { Option_fromSeq, ResizeArray_map, ResizeArray_choose, ResizeArray_filter } from '../Core/Helper/Collections.js';
6
6
  import { ScholarlyArticleConversion_composeScholarlyArticle_D324A6D, ScholarlyArticleConversion_decomposeScholarlyArticle_Z6839B9E8 } from './ScholarlyArticle.js';
7
- import { PersonConversion_composePerson_Z64D846DC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
7
+ import { PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
8
8
  import { BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
9
9
  import { toList, delay, append } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
10
10
  import { AssayConversion_composeAssay_Z5C53FD5C, AssayConversion_decomposeAssay_Z6839B9E8 } from './Assay.js';
@@ -33,7 +33,7 @@ function InvestigationConversion_composeInvestigation_Z284BC0AC(investigation, f
33
33
  const dateCreated = bind(tryFromString, investigation.SubmissionDate);
34
34
  const datePublished = defaultArg(bind(tryFromString, investigation.PublicReleaseDate), now());
35
35
  const publications = Option_fromSeq(ResizeArray_map(ScholarlyArticleConversion_composeScholarlyArticle_D324A6D, investigation.Publications));
36
- const creators = Option_fromSeq(ResizeArray_map(PersonConversion_composePerson_Z64D846DC, investigation.Contacts));
36
+ const creators = Option_fromSeq(ResizeArray_map((c) => PersonConversion_composePerson_2B0BECCC(c, investigation.GetAllPersons()), investigation.Contacts));
37
37
  const comments = Option_fromSeq(ResizeArray_map(BaseTypes_composeComment_Z13201A7E, investigation.Comments));
38
38
  const hasParts = Option_fromSeq((collection = toList(delay(() => append(ResizeArray_map((a_3) => AssayConversion_composeAssay_Z5C53FD5C(a_3, unwrap(fs)), investigation.Assays), delay(() => append(ResizeArray_map((s_2) => StudyConversion_composeStudy_ZFE0E38E(s_2, unwrap(fs)), investigation.Studies), delay(() => append(ResizeArray_choose((w) => {
39
39
  try {
@@ -11,6 +11,6 @@ export declare function PersonConversion_composeAffiliation_Z721C83C5(affiliatio
11
11
  export declare function PersonConversion_decomposeAffiliation_Z2F770004(affiliation: LDNode, context?: LDContext): string;
12
12
  export declare function PersonConversion_composeAddress_Z721C83C5(address: string): any;
13
13
  export declare function PersonConversion_decomposeAddress_4E60E31B(address: any): string;
14
- export declare function PersonConversion_composePerson_Z64D846DC(person: Person): LDNode;
14
+ export declare function PersonConversion_composePerson_2B0BECCC(person: Person, persons?: Iterable<Person>): LDNode;
15
15
  export declare function PersonConversion_decomposePerson_Z6839B9E8(person: LDNode, graph?: LDGraph, context?: LDContext): Person;
16
16
  //# sourceMappingURL=Person.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"Person.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Person.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAMzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAOpD,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAG3C,qBAAa,gBAAgB;;CAG5B;AAED,wBAAgB,4BAA4B,IAAI,QAAQ,CAEvD;AAED,wBAAgB,6BAA6B,IAAI,MAAM,CAEtD;AAED,wBAAgB,6CAA6C,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAczF;AAED,wBAAgB,+CAA+C,CAAC,WAAW,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAOhH;AAED,wBAAgB,yCAAyC,CAAC,OAAO,EAAE,MAAM,GAAG,GAAG,CAW9E;AAED,wBAAgB,0CAA0C,CAAC,OAAO,EAAE,GAAG,GAAG,MAAM,CAU/E;AAED,wBAAgB,wCAAwC,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAc/E;AAED,wBAAgB,0CAA0C,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAevH"}
1
+ {"version":3,"file":"Person.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Person.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAMzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AACpD,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAU3C,qBAAa,gBAAgB;;CAG5B;AAED,wBAAgB,4BAA4B,IAAI,QAAQ,CAEvD;AAED,wBAAgB,6BAA6B,IAAI,MAAM,CAEtD;AAED,wBAAgB,6CAA6C,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAczF;AAED,wBAAgB,+CAA+C,CAAC,WAAW,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAOhH;AAED,wBAAgB,yCAAyC,CAAC,OAAO,EAAE,MAAM,GAAG,GAAG,CAW9E;AAED,wBAAgB,0CAA0C,CAAC,OAAO,EAAE,GAAG,GAAG,MAAM,CAU/E;AAED,wBAAgB,uCAAuC,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,QAAQ,CAAC,MAAM,CAAC,GAAG,MAAM,CA+B1G;AAED,wBAAgB,0CAA0C,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAevH"}
@@ -3,17 +3,18 @@ import { LDOrganization } from '../ROCrate/LDTypes/Organization.js';
3
3
  import { fromString } from '../fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js';
4
4
  import { decoder, encoder } from '../Json/ROCrate/LDNode.js';
5
5
  import { LDNode } from '../ROCrate/LDObject.js';
6
- import { toText, printf } from '../../node_modules/@fable-org/fable-library-js/String.js';
7
- import { isEmpty, filter } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
8
- import { unwrap, value, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
6
+ import { toText, printf, toFail } from '../../node_modules/@fable-org/fable-library-js/String.js';
7
+ import { isEmpty, filter, tryFind } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
8
+ import { unwrap, bind, value, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
9
9
  import { toString } from '../fable_modules/Thoth.Json.JavaScript.0.4.1/Encode.fs.js';
10
+ import { Person } from '../Core/Person.js';
11
+ import { equals } from '../../node_modules/@fable-org/fable-library-js/Util.js';
12
+ import { tryGetOrcidNumber } from '../Core/Helper/ORCID.js';
10
13
  import { Option_fromSeq, ResizeArray_map } from '../Core/Helper/Collections.js';
11
14
  import { BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_decomposeDefinedTerm_Z2F770004 } from './Basic.js';
12
15
  import { toString as toString$1 } from '../../node_modules/@fable-org/fable-library-js/Types.js';
13
16
  import { Comment$ } from '../Core/Comment.js';
14
17
  import { LDPerson } from '../ROCrate/LDTypes/Person.js';
15
- import { Person } from '../Core/Person.js';
16
- import { tryGetOrcidNumber } from '../Core/Helper/ORCID.js';
17
18
 
18
19
  class PersonConversion {
19
20
  constructor() {
@@ -67,19 +68,34 @@ function PersonConversion_decomposeAddress_4E60E31B(address) {
67
68
  throw new Error("Address must be a string or a Json.LDNode");
68
69
  }
69
70
  }
70
- function PersonConversion_composePerson_Z64D846DC(person) {
71
- let givenName;
72
- const matchValue = person.FirstName;
71
+ function PersonConversion_composePerson_2B0BECCC(person, persons) {
72
+ let orcid;
73
+ const matchValue = person.ORCID;
73
74
  if (matchValue == null) {
75
+ orcid = persons == null ? void 0 : bind((p_1) => p_1.ORCID, tryFind((p) => {
76
+ if (equals(p.FirstName, person.FirstName)) {
77
+ return equals(p.LastName, person.LastName);
78
+ } else {
79
+ return false;
80
+ }
81
+ }, value(persons)));
82
+ } else {
83
+ const o = value(matchValue);
84
+ const matchValue_1 = tryGetOrcidNumber(o);
85
+ orcid = matchValue_1 == null ? toFail(printf("Invalid ORCID: %s"))(o) : value(matchValue_1);
86
+ }
87
+ let givenName;
88
+ const matchValue_2 = person.FirstName;
89
+ if (matchValue_2 == null) {
74
90
  throw new Error("Person must have a given name");
75
91
  } else {
76
- givenName = value(matchValue);
92
+ givenName = value(matchValue_2);
77
93
  }
78
94
  const jobTitles = Option_fromSeq(ResizeArray_map(BaseTypes_composeDefinedTerm_ZDED3A0F, person.Roles));
79
95
  const disambiguatingDescriptions = Option_fromSeq(ResizeArray_map(toString$1, person.Comments));
80
96
  const address_1 = map(PersonConversion_composeAddress_Z721C83C5, person.Address);
81
97
  const affiliation_1 = map(PersonConversion_composeAffiliation_Z721C83C5, person.Affiliation);
82
- return LDPerson.create(givenName, unwrap(person.ORCID), void 0, unwrap(affiliation_1), unwrap(person.EMail), unwrap(person.LastName), void 0, unwrap(jobTitles), unwrap(person.MidInitials), address_1, unwrap(disambiguatingDescriptions), unwrap(person.Fax), unwrap(person.Phone));
98
+ return LDPerson.create(givenName, unwrap(orcid), void 0, unwrap(affiliation_1), unwrap(person.EMail), unwrap(person.LastName), void 0, unwrap(jobTitles), unwrap(person.MidInitials), address_1, unwrap(disambiguatingDescriptions), unwrap(person.Fax), unwrap(person.Phone));
83
99
  }
84
100
  function PersonConversion_decomposePerson_Z6839B9E8(person, graph, context) {
85
101
  const orcid = tryGetOrcidNumber(person.Id);
@@ -97,4 +113,4 @@ function PersonConversion_decomposePerson_Z6839B9E8(person, graph, context) {
97
113
  return Person.create(unwrap(orcid), unwrap(LDPerson.tryGetFamilyNameAsString(person, unwrap(context))), LDPerson.getGivenNameAsString(person, unwrap(context)), unwrap(LDPerson.tryGetAdditionalNameAsString(person, unwrap(context))), unwrap(LDPerson.tryGetEmailAsString(person, unwrap(context))), unwrap(LDPerson.tryGetTelephoneAsString(person, unwrap(context))), unwrap(LDPerson.tryGetFaxNumberAsString(person, unwrap(context))), unwrap(address), unwrap(affiliation), roles, comments);
98
114
  }
99
115
 
100
- export { PersonConversion, PersonConversion_$reflection, PersonConversion_composeAddress_Z721C83C5, PersonConversion_composeAffiliation_Z721C83C5, PersonConversion_composePerson_Z64D846DC, PersonConversion_decomposeAddress_4E60E31B, PersonConversion_decomposeAffiliation_Z2F770004, PersonConversion_decomposePerson_Z6839B9E8, PersonConversion_get_orcidKey };
116
+ export { PersonConversion, PersonConversion_$reflection, PersonConversion_composeAddress_Z721C83C5, PersonConversion_composeAffiliation_Z721C83C5, PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposeAddress_4E60E31B, PersonConversion_decomposeAffiliation_Z2F770004, PersonConversion_decomposePerson_Z6839B9E8, PersonConversion_get_orcidKey };
@@ -1 +1 @@
1
- {"version":3,"file":"Run.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Run.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,OAAO,EAAgB,cAAc,EAAE,MAAM,oBAAoB,CAAC;AAOlE,OAAO,EAAE,QAAQ,EAAgB,MAAM,kBAAkB,CAAC;AAI1D,OAAO,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AACrE,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAEzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEpD,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AAQvE,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAczD,qBAAa,aAAa;;CAGzB;AAED,wBAAgB,yBAAyB,IAAI,QAAQ,CAEpD;AAED;;GAEG;AACH,wBAAgB,qCAAqC,CAAC,KAAK,EAAE,cAAc,GAAG,MAAM,CAGnF;AAED;;GAEG;AACH,wBAAgB,mCAAmC,CAAC,KAAK,EAAE,cAAc,GAAG,OAAO,CAgBlF;AAED;;;;GAIG;AACH,wBAAgB,+CAA+C,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAOrG;AAED,wBAAgB,iDAAiD,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAQvG;AAED,wBAAgB,2CAA2C,CAAC,UAAU,EAAE,qBAAqB,EAAE,aAAa,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAwCnK;AAED,wBAAgB,8CAA8C,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,qBAAqB,CAqB/J;AAED,wBAAgB,0DAA0D,CAAC,GAAG,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,EAAE,CAkDjH;AAED,wBAAgB,uDAAuD,CAAC,kBAAkB,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,CAAC,wBAAwB,EAAE,qBAAqB,EAAE,CAAC,CAK9M;AAED,wBAAgB,iCAAiC,CAAC,GAAG,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CA8BtF;AAED,wBAAgB,oCAAoC,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAoC9G"}
1
+ {"version":3,"file":"Run.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Run.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,OAAO,EAAgB,cAAc,EAAE,MAAM,oBAAoB,CAAC;AAOlE,OAAO,EAAE,QAAQ,EAAgB,MAAM,kBAAkB,CAAC;AAI1D,OAAO,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AACrE,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAEzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEpD,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AAQvE,OAAO,EAAoB,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAC/D,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAczD,qBAAa,aAAa;;CAGzB;AAED,wBAAgB,yBAAyB,IAAI,QAAQ,CAEpD;AAED;;GAEG;AACH,wBAAgB,qCAAqC,CAAC,KAAK,EAAE,cAAc,GAAG,MAAM,CAGnF;AAED;;GAEG;AACH,wBAAgB,mCAAmC,CAAC,KAAK,EAAE,cAAc,GAAG,OAAO,CAgBlF;AAED;;;;GAIG;AACH,wBAAgB,+CAA+C,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAOrG;AAED,wBAAgB,iDAAiD,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAQvG;AAED,wBAAgB,2CAA2C,CAAC,UAAU,EAAE,qBAAqB,EAAE,aAAa,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAwCnK;AAED,wBAAgB,8CAA8C,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,qBAAqB,CAqB/J;AAED,wBAAgB,0DAA0D,CAAC,GAAG,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,EAAE,CAkDjH;AAED,wBAAgB,uDAAuD,CAAC,kBAAkB,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,CAAC,wBAAwB,EAAE,qBAAqB,EAAE,CAAC,CAK9M;AAED,wBAAgB,iCAAiC,CAAC,GAAG,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CA+BtF;AAED,wBAAgB,oCAAoC,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAoC9G"}
@@ -21,7 +21,7 @@ import { LDWorkflowInvocation } from '../ROCrate/LDTypes/WorkflowInvocation.js';
21
21
  import { LDLabProcess } from '../ROCrate/LDTypes/LabProcess.js';
22
22
  import { ArcRun } from '../Core/ArcTypes.js';
23
23
  import { BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_composePropertyValueFromOA_ZDED3A0F, BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeDefinedTerm_Z2F770004, BaseTypes_decomposePropertyValueToOA_Z2F770004, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
24
- import { PersonConversion_composePerson_Z64D846DC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
24
+ import { PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
25
25
  import { LDOrganization } from '../ROCrate/LDTypes/Organization.js';
26
26
  import { utcNow } from '../../node_modules/@fable-org/fable-library-js/Date.js';
27
27
  import { DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
@@ -200,7 +200,8 @@ function RunConversion_composeRun_Z8CC08AC(run, fs) {
200
200
  const measurementMethod = map(BaseTypes_composeDefinedTerm_ZDED3A0F, run.TechnologyType);
201
201
  const measurementTechnique = map(BaseTypes_composeDefinedTerm_ZDED3A0F, run.TechnologyPlatform);
202
202
  const variableMeasured = map(BaseTypes_composePropertyValueFromOA_ZDED3A0F, run.MeasurementType);
203
- const creators = Option_fromSeq(ResizeArray_map(PersonConversion_composePerson_Z64D846DC, run.Performers));
203
+ const persons = map((i) => i.GetAllPersons(), run.Investigation);
204
+ const creators = Option_fromSeq(ResizeArray_map((c) => PersonConversion_composePerson_2B0BECCC(c, unwrap(persons)), run.Performers));
204
205
  const publisher = LDOrganization.create("DataPLANT");
205
206
  const dateCreated = utcNow();
206
207
  if (creators != null) {
@@ -1 +1 @@
1
- {"version":3,"file":"ScholarlyArticle.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/ScholarlyArticle.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AASzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAOpD,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAErD,qBAAa,0BAA0B;;CAGtC;AAED,wBAAgB,sCAAsC,IAAI,QAAQ,CAEjE;AAED,wBAAgB,kDAAkD,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAczF;AAED,wBAAgB,iDAAiD,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,CAmCrF;AAED,wBAAgB,mDAAmD,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAG7F;AAED,wBAAgB,oDAAoD,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAOhH;AAED,wBAAgB,oDAAoD,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAEnH;AAED,wBAAgB,0DAA0D,CAAC,WAAW,EAAE,WAAW,GAAG,MAAM,CAc3G;AAED,wBAAgB,8DAA8D,CAAC,EAAE,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW,CAa5I"}
1
+ {"version":3,"file":"ScholarlyArticle.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/ScholarlyArticle.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AASzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAOpD,OAAO,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAErD,qBAAa,0BAA0B;;CAGtC;AAED,wBAAgB,sCAAsC,IAAI,QAAQ,CAEjE;AAED,wBAAgB,kDAAkD,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAezF;AAED,wBAAgB,iDAAiD,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,EAAE,CAmCrF;AAED,wBAAgB,mDAAmD,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAG7F;AAED,wBAAgB,oDAAoD,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAOhH;AAED,wBAAgB,oDAAoD,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAEnH;AAED,wBAAgB,0DAA0D,CAAC,WAAW,EAAE,WAAW,GAAG,MAAM,CAc3G;AAED,wBAAgB,8DAA8D,CAAC,EAAE,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW,CAa5I"}
@@ -33,7 +33,8 @@ function ScholarlyArticleConversion_composeAuthor_Z721C83C5(author) {
33
33
  return matchValue.fields[0];
34
34
  }
35
35
  } catch (matchValue_1) {
36
- return LDPerson.create(author);
36
+ const id = `#Author_${author}`;
37
+ return LDPerson.create(author, void 0, id);
37
38
  }
38
39
  }
39
40
  function ScholarlyArticleConversion_splitAuthors_Z721C83C5(a) {
@@ -1 +1 @@
1
- {"version":3,"file":"Study.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Study.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAOjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAWzD,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAEzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEpD,qBAAa,eAAe;;CAG3B;AAED,wBAAgB,2BAA2B,IAAI,QAAQ,CAEtD;AAED,wBAAgB,qCAAqC,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAY9F;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAWtH"}
1
+ {"version":3,"file":"Study.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Study.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAOjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AACzD,OAAO,EAAE,QAAQ,EAAoB,MAAM,qBAAqB,CAAC;AAWjE,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAEzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEpD,qBAAa,eAAe;;CAG3B;AAED,wBAAgB,2BAA2B,IAAI,QAAQ,CAEtD;AAED,wBAAgB,qCAAqC,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAa9F;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAWtH"}
@@ -1,10 +1,11 @@
1
1
  import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
2
- import { bind, unwrap, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
2
+ import { bind, map, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
3
3
  import { tryFromString, toString } from './DateTime.js';
4
4
  import { now } from '../../node_modules/@fable-org/fable-library-js/Date.js';
5
5
  import { Option_fromSeq, ResizeArray_map, Option_fromValueWithDefault } from '../Core/Helper/Collections.js';
6
6
  import { ScholarlyArticleConversion_composeScholarlyArticle_D324A6D, ScholarlyArticleConversion_decomposeScholarlyArticle_Z6839B9E8 } from './ScholarlyArticle.js';
7
- import { PersonConversion_composePerson_Z64D846DC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
7
+ import { ArcStudy } from '../Core/ArcTypes.js';
8
+ import { PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
8
9
  import { ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586 } from './Table.js';
9
10
  import { ArcTables } from '../Core/Table/ArcTables.js';
10
11
  import { DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
@@ -12,7 +13,6 @@ import { Datamap } from '../Core/Datamap.js';
12
13
  import { AssayConversion_getDataFilesFromProcesses_6BABD1B0 } from './Assay.js';
13
14
  import { BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
14
15
  import { LDDataset } from '../ROCrate/LDTypes/Dataset.js';
15
- import { ArcStudy } from '../Core/ArcTypes.js';
16
16
  import { ofSeq } from '../../node_modules/@fable-org/fable-library-js/List.js';
17
17
 
18
18
  class StudyConversion {
@@ -28,7 +28,8 @@ function StudyConversion_composeStudy_ZFE0E38E(study, fs) {
28
28
  const datePublished = bind(tryFromString, study.PublicReleaseDate);
29
29
  const dateModified = now();
30
30
  const publications = Option_fromSeq(ResizeArray_map(ScholarlyArticleConversion_composeScholarlyArticle_D324A6D, study.Publications));
31
- const creators = Option_fromSeq(ResizeArray_map(PersonConversion_composePerson_Z64D846DC, study.Contacts));
31
+ const persons = map((i) => i.GetAllPersons(), study.Investigation);
32
+ const creators = Option_fromSeq(ResizeArray_map((c) => PersonConversion_composePerson_2B0BECCC(c, unwrap(persons)), study.Contacts));
32
33
  const processSequence = Option_fromSeq((collection = ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C(new ArcTables(study.Tables), void 0, study.Identifier, unwrap(fs)), Array.from(collection)));
33
34
  const fragmentDescriptors = map(DatamapConversion_composeFragmentDescriptors_Z892BFC3, study.Datamap);
34
35
  const dataFiles = map((ps) => AssayConversion_getDataFilesFromProcesses_6BABD1B0(ps, unwrap(fragmentDescriptors)), processSequence);
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"Workflow.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Workflow.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AAKpD,OAAO,EAAW,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAEtE,OAAO,EAAiC,MAAM,EAAoB,MAAM,uCAAuC,CAAC;AAEhH,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAEzD,OAAO,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAC;AAE1D,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AACpD,OAAO,EAAE,SAAS,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAI7D,OAAO,EAA8B,SAAS,EAAE,MAAM,8BAA8B,CAAC;AAErF,OAAO,EAAgI,wBAAwB,EAAwC,MAAM,6BAA6B,CAAC;AAC3O,OAAO,EAA6B,YAAY,EAAE,sBAAsB,EAAE,MAAM,yBAAyB,CAAC;AAQ1G,OAAO,EAAE,kBAAkB,EAAE,MAAM,2BAA2B,CAAC;AAG/D,OAAO,EAAE,4BAA4B,EAAE,MAAM,qCAAqC,CAAC;AACnF,OAAO,EAAE,uBAAuB,EAAE,MAAM,gCAAgC,CAAC;AACzE,OAAO,EAAE,sBAAsB,EAAE,MAAM,+BAA+B,CAAC;AAKvE,OAAO,EAAE,WAAW,EAAoB,MAAM,qBAAqB,CAAC;AAOpE,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAEzD,qBAAa,kBAAkB;;CAG9B;AAED,wBAAgB,8BAA8B,IAAI,QAAQ,CAEzD;AAED,wBAAgB,kDAAkD,CAAC,CAAC,EAAE,cAAc,GAAG,MAAM,CAQ5F;AAED,wBAAgB,oDAAoD,CAAC,CAAC,EAAE,MAAM,GAAG,cAAc,CAuC9F;AAED,wBAAgB,qDAAqD,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,CAmBvI;AAED,wBAAgB,4DAA4D,CAAC,GAAG,EAAE,QAAQ,EAAE,YAAY,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,CAa3I;AAED,wBAAgB,kDAAkD,CAAC,WAAW,EAAE,MAAM,EAAE,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAAC,YAAY,CAAC,CAqBnI;AAED,wBAAgB,6DAA6D,CAAC,GAAG,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,QAAQ,CA0BzI;AAED,wBAAgB,mEAAmE,CAAC,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,CAQ1H;AAED,wBAAgB,6DAA6D,CAAC,GAAG,EAAE,SAAS,EAAE,YAAY,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,CAY7I;AAED,wBAAgB,mDAAmD,CAAC,WAAW,EAAE,MAAM,EAAE,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,aAAa,CAE7H;AAED,wBAAgB,8DAA8D,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAK5I;AAED,wBAAgB,qDAAqD,CAAC,IAAI,EAAE,SAAS,GAAG,MAAM,CAsC7F;AAED,wBAAgB,uDAAuD,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,SAAS,CAGrI;AAED;;;GAGG;AACH,wBAAgB,gEAAgE,CAAC,EAAE,EAAE,wBAAwB,GAAG,QAAQ,EAAE,CAEzH;AAED,wBAAgB,8CAA8C,IAAI,MAAM,CAEvE;AAED,wBAAgB,kDAAkD,IAAI,MAAM,CAE3E;AAED,wBAAgB,wDAAwD,IAAI,MAAM,CAEjF;AAED,wBAAgB,mDAAmD,IAAI,MAAM,CAE5E;AAED;;;GAGG;AACH,wBAAgB,4CAA4C,CAAC,GAAG,EAAE,sBAAsB,GAAG,MAAM,CAahG;AAED;;;GAGG;AACH,wBAAgB,6DAA6D,CAAC,eAAe,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAAC,wBAAwB,CAAC,CAoD7K;AAED,wBAAgB,sEAAsE,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,kBAAkB,EAAE,YAAY,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,CAItL;AAED,wBAAgB,sEAAsE,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,kBAAkB,CAGjK;AAED;;;GAGG;AACH,wBAAgB,iFAAiF,CAAC,QAAQ,EAAE,MAAM,EAAE,cAAc,EAAE,4BAA4B,EAAE,YAAY,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,CAMjN;AAED;;;GAGG;AACH,wBAAgB,gFAAgF,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,4BAA4B,CAGrL;AAED,wBAAgB,4EAA4E,CAAC,QAAQ,EAAE,MAAM,EAAE,SAAS,EAAE,uBAAuB,EAAE,YAAY,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,CAIlM;AAED,wBAAgB,2EAA2E,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,uBAAuB,CAE3K;AAED,wBAAgB,gDAAgD,CAAC,EAAE,EAAE,IAAI,EAAE,YAAY,EAAE,UAAU,EAAE,EAAE,GAAG,MAAM,CAK/G;AAED,wBAAgB,gEAAgE,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,sBAAsB,EAAE,YAAY,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,CAKpL;AAED;;;GAGG;AACH,wBAAgB,iDAAiD,CAAC,IAAI,EAAE,MAAM,EAAE,gBAAgB,CAAC,EAAE,MAAM,EAAE,oBAAoB,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,YAAY,CAG7L;AAED;;;GAGG;AACH,wBAAgB,+DAA+D,CAAC,QAAQ,EAAE,MAAM,EAAE,oBAAoB,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,sBAAsB,CAM9L;AAED;;;GAGG;AACH,wBAAgB,sEAAsE,CAAC,QAAQ,EAAE,MAAM,EAAE,EAAE,EAAE,wBAAwB,EAAE,YAAY,CAAC,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,CAWtL;AAED;;;GAGG;AACH,wBAAgB,qEAAqE,CAAC,QAAQ,EAAE,MAAM,EAAE,oBAAoB,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,wBAAwB,CAetM;AAED,wBAAgB,2CAA2C,CAAC,QAAQ,EAAE,WAAW,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAsC1G;AAED,wBAAgB,8CAA8C,CAAC,QAAQ,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW,CAalI"}
@@ -1,16 +1,16 @@
1
1
  import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
2
2
  import { isComplexType, cwlTypeToYamlString, writeYaml, encodeCWLType } from '../CWL/Encode.js';
3
- import { read } from '../fable_modules/YAMLicious.1.0.0-alpha.7/Reader.fs.js';
4
- import { YAMLElement_Sequence, YAMLElement_Comment } from '../fable_modules/YAMLicious.1.0.0-alpha.7/YAMLiciousTypes.fs.js';
5
- import { object } from '../fable_modules/YAMLicious.1.0.0-alpha.7/Decode.fs.js';
3
+ import { read } from '../fable_modules/YAMLicious.1.0.0-alpha.11/Reader.fs.js';
4
+ import { YAMLElement_Sequence, YAMLElement_Comment } from '../fable_modules/YAMLicious.1.0.0-alpha.11/YAMLiciousTypes.fs.js';
5
+ import { object } from '../fable_modules/YAMLicious.1.0.0-alpha.11/Decode.fs.js';
6
6
  import { Decode_cwlTypeDecoder$0027, Decode_cwlTypeStringMatcher } from '../CWL/Decode.js';
7
7
  import { isEmpty, head, tail } from '../../node_modules/@fable-org/fable-library-js/List.js';
8
8
  import { value, defaultArg, unwrap, bind, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
9
9
  import { LDPropertyValue } from '../ROCrate/LDTypes/PropertyValue.js';
10
10
  import { LDFormalParameter } from '../ROCrate/LDTypes/FormalParameter.js';
11
- import { InputBinding_create_ZAC0108A, CWLInput } from '../CWL/Inputs.js';
11
+ import { InputBinding, CWLInput } from '../CWL/Inputs.js';
12
12
  import { tryPick, exactlyOne, toArray, find } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
13
- import { OutputBinding_create_6DFDD678, CWLOutput } from '../CWL/Outputs.js';
13
+ import { OutputBinding, CWLOutput } from '../CWL/Outputs.js';
14
14
  import { int32ToString, stringHash } from '../../node_modules/@fable-org/fable-library-js/Util.js';
15
15
  import { Component_create_Z2F0B38C7 } from '../Core/Process/Component.js';
16
16
  import { BaseTypes_decomposePropertyValue_Z2F770004, BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeDefinedTerm_Z2F770004, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
@@ -33,11 +33,11 @@ import { resolveWorkflowStepRunFromLookup } from '../CWLRunResolver.js';
33
33
  import { Workflow_cwlFileNameFromIdentifier } from '../Core/Helper/Identifier.js';
34
34
  import { toFail, printf } from '../../node_modules/@fable-org/fable-library-js/String.js';
35
35
  import { LDOrganization } from '../ROCrate/LDTypes/Organization.js';
36
- import { PersonConversion_composePerson_Z64D846DC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
36
+ import { ArcWorkflow } from '../Core/ArcTypes.js';
37
+ import { PersonConversion_composePerson_2B0BECCC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
37
38
  import { utcNow } from '../../node_modules/@fable-org/fable-library-js/Date.js';
38
39
  import { DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
39
40
  import { Datamap } from '../Core/Datamap.js';
40
- import { ArcWorkflow } from '../Core/ArcTypes.js';
41
41
 
42
42
  class WorkflowConversion {
43
43
  constructor() {
@@ -121,7 +121,7 @@ function WorkflowConversion_composeFormalParameterFromInput_Z7A02DED7(inp, workf
121
121
  }
122
122
  const valueRequired = !defaultArg(inp.Optional, false);
123
123
  const id = LDFormalParameter.genID(inp.Name, unwrap(workflowName), unwrap(runName));
124
- const identifiers = bind((ib) => WorkflowConversion_composeFormalParamInputIdentifiers(ib.Prefix, ib.Position), inp.InputBinding);
124
+ const identifiers = bind((ib) => WorkflowConversion_composeFormalParamInputIdentifiers(ib.Prefix, ib._position), inp.InputBinding);
125
125
  return LDFormalParameter.create(additionalType, id, void 0, inp.Name, void 0, void 0, void 0, void 0, valueRequired, unwrap(identifiers));
126
126
  }
127
127
  function WorkflowConversion_decomposeInputBindings_1AAAE9A5(identifiers, context) {
@@ -141,7 +141,7 @@ function WorkflowConversion_decomposeInputBindings_1AAAE9A5(identifiers, context
141
141
  case 0:
142
142
  return void 0;
143
143
  default:
144
- return InputBinding_create_ZAC0108A(unwrap(prefix), unwrap(position));
144
+ return InputBinding.create(unwrap(prefix), unwrap(position));
145
145
  }
146
146
  }
147
147
  function WorkflowConversion_decomposeInputFromFormalParameter_2664C4B8(inp, context, graph) {
@@ -190,7 +190,7 @@ function WorkflowConversion_composeFormalParameterFromOutput_Z25C7EC80(out, work
190
190
  return LDFormalParameter.create(additionalType, id, void 0, out.Name, void 0, void 0, void 0, void 0, true, unwrap(identifiers));
191
191
  }
192
192
  function WorkflowConversion_decomposeOutputBindings_1AAAE9A5(identifiers, context) {
193
- return OutputBinding_create_6DFDD678(unwrap(tryPick((n) => LDPropertyValue.tryGetAsGlob(n, unwrap(context)), identifiers)));
193
+ return OutputBinding.create(unwrap(tryPick((n) => LDPropertyValue.tryGetAsGlob(n, unwrap(context)), identifiers)));
194
194
  }
195
195
  function WorkflowConversion_decomposeOutputFromFormalParameter_2664C4B8(outp, context, graph) {
196
196
  const t_1 = WorkflowConversion_decomposeAdditionalType_Z721C83C5(exactlyOne(outp.AdditionalType));
@@ -328,7 +328,7 @@ function WorkflowConversion_composeWorkflowProtocolFromToolDescription_7B8357DA(
328
328
  }
329
329
  function WorkflowConversion_decomposeWorkflowProtocolToToolDescription_2664C4B8(protocol, context, graph) {
330
330
  const inputs = ResizeArray_map((i) => WorkflowConversion_decomposeInputFromFormalParameter_2664C4B8(i, unwrap(context), unwrap(graph)), LDComputationalWorkflow.getInputsAsFormalParameters(protocol, unwrap(graph), unwrap(context)));
331
- return new CWLToolDescription(ResizeArray_map((o) => WorkflowConversion_decomposeOutputFromFormalParameter_2664C4B8(o, unwrap(context), unwrap(graph)), LDComputationalWorkflow.getOutputsAsFormalParameter(protocol, unwrap(graph), unwrap(context))), void 0, void 0, void 0, void 0, void 0, inputs);
331
+ return new CWLToolDescription(ResizeArray_map((o) => WorkflowConversion_decomposeOutputFromFormalParameter_2664C4B8(o, unwrap(context), unwrap(graph)), LDComputationalWorkflow.getOutputsAsFormalParameter(protocol, unwrap(graph), unwrap(context))), void 0, void 0, void 0, void 0, void 0, void 0, void 0, void 0, void 0, void 0, void 0, void 0, inputs);
332
332
  }
333
333
  function WorkflowConversion_composeWorkflowProtocolFromExpressionToolDescription_Z7BEB6658(filePath, expressionTool, workflowName, runName) {
334
334
  const inputs = map((a) => ResizeArray_map((i) => WorkflowConversion_composeFormalParameterFromInput_Z7A02DED7(i, unwrap(workflowName), unwrap(runName)), a), expressionTool.Inputs);
@@ -411,7 +411,8 @@ function WorkflowConversion_composeWorkflow_42450E6E(workflow, fs) {
411
411
  workflowProtocol = WorkflowConversion_composeWorkflowProtocolFromProcessingUnit_Z3099C0F7(workflowFilePath, value(matchValue), workflow.Identifier);
412
412
  }
413
413
  const publisher = LDOrganization.create("DataPLANT");
414
- const creators = Option_fromSeq(ResizeArray_map(PersonConversion_composePerson_Z64D846DC, workflow.Contacts));
414
+ const persons = map((inv) => inv.GetAllPersons(), workflow.Investigation);
415
+ const creators = Option_fromSeq(ResizeArray_map((c) => PersonConversion_composePerson_2B0BECCC(c, unwrap(persons)), workflow.Contacts));
415
416
  const dateCreated = utcNow();
416
417
  if (creators != null) {
417
418
  LDComputationalWorkflow.setCreators(workflowProtocol, value(creators));
@@ -14,16 +14,20 @@ export declare function ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C(this$: ArcRu
14
14
  export declare function ARCtrl_ArcRun__ArcRun_fromROCrateRun_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcRun;
15
15
  export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B(this$: ArcInvestigation, fs: Option<FileSystem>, ignoreBrokenWR: Option<boolean>): LDNode;
16
16
  export declare function ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcInvestigation;
17
- export declare function ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcAssay;
18
- export declare function ARCtrl_ROCrate_Dataset__Dataset_fromArcAssay_Static_1501C0F8(a: ArcAssay): LDNode;
19
- export declare function ARCtrl_ROCrate_Dataset__Dataset_toArcStudy_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcStudy;
20
- export declare function ARCtrl_ROCrate_Dataset__Dataset_fromArcStudy_Static_1680536E(a: ArcStudy): LDNode;
21
- export declare function ARCtrl_ROCrate_Dataset__Dataset_toArcWorkflow_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcWorkflow;
22
- export declare function ARCtrl_ROCrate_Dataset__Dataset_fromArcWorkflow_Static_Z1C75CB0E(a: ArcWorkflow): LDNode;
23
- export declare function ARCtrl_ROCrate_Dataset__Dataset_toArcRun_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcRun;
24
- export declare function ARCtrl_ROCrate_Dataset__Dataset_fromArcRun_Static_Z3EFAF6F8(a: ArcRun): LDNode;
25
- export declare function ARCtrl_ROCrate_Dataset__Dataset_toArcInvestigation_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcInvestigation;
26
- export declare function ARCtrl_ROCrate_Dataset__Dataset_fromArcInvestigation_Static_Z720BD3FF(a: ArcInvestigation): LDNode;
17
+ export declare class Dataset {
18
+ constructor();
19
+ }
20
+ export declare function Dataset_$reflection(): TypeInfo;
21
+ export declare function Dataset_toArcAssay_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcAssay;
22
+ export declare function Dataset_fromArcAssay_1501C0F8(a: ArcAssay): LDNode;
23
+ export declare function Dataset_toArcStudy_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcStudy;
24
+ export declare function Dataset_fromArcStudy_1680536E(a: ArcStudy): LDNode;
25
+ export declare function Dataset_toArcWorkflow_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcWorkflow;
26
+ export declare function Dataset_fromArcWorkflow_Z1C75CB0E(a: ArcWorkflow): LDNode;
27
+ export declare function Dataset_toArcRun_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcRun;
28
+ export declare function Dataset_fromArcRun_Z3EFAF6F8(a: ArcRun): LDNode;
29
+ export declare function Dataset_toArcInvestigation_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcInvestigation;
30
+ export declare function Dataset_fromArcInvestigation_Z720BD3FF(a: ArcInvestigation): LDNode;
27
31
  export declare class Conversion {
28
32
  constructor();
29
33
  static arcAssayToDataset(a: ArcAssay, fs?: FileSystem): LDNode;
@@ -1 +1 @@
1
- {"version":3,"file":"Conversion.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/Conversion.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,MAAM,EAAU,MAAM,uCAAuC,CAAC;AACvE,OAAO,EAAE,gBAAgB,EAAE,MAAM,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAC/F,OAAO,EAAE,UAAU,EAAE,MAAM,4BAA4B,CAAC;AACxD,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAKnD,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,wBAAgB,iDAAiD,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE,MAAM,CAAC,UAAU,CAAC,GAAG,MAAM,CAEjH;AAED,wBAAgB,2DAA2D,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAErI;AAED,wBAAgB,iDAAiD,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE,MAAM,CAAC,UAAU,CAAC,GAAG,MAAM,CAEjH;AAED,wBAAgB,2DAA2D,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAErI;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,WAAW,EAAE,EAAE,EAAE,MAAM,CAAC,UAAU,CAAC,GAAG,MAAM,CAE7H;AAED,wBAAgB,oEAAoE,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW,CAEjJ;AAED,wBAAgB,2CAA2C,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,CAAC,UAAU,CAAC,GAAG,MAAM,CAEzG;AAED,wBAAgB,qDAAqD,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAE7H;AAED,wBAAgB,0EAA0E,CAAC,KAAK,EAAE,gBAAgB,EAAE,EAAE,EAAE,MAAM,CAAC,UAAU,CAAC,EAAE,cAAc,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,MAAM,CAEnL;AAED,wBAAgB,mFAAmF,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,gBAAgB,CAErK;AAED,wBAAgB,2DAA2D,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAErI;AAED,wBAAgB,4DAA4D,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAEhG;AAED,wBAAgB,2DAA2D,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAErI;AAED,wBAAgB,4DAA4D,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAEhG;AAED,wBAAgB,8DAA8D,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW,CAE3I;AAED,wBAAgB,gEAAgE,CAAC,CAAC,EAAE,WAAW,GAAG,MAAM,CAEvG;AAED,wBAAgB,yDAAyD,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAEjI;AAED,wBAAgB,2DAA2D,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAE7F;AAED,wBAAgB,mEAAmE,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,gBAAgB,CAErJ;AAED,wBAAgB,qEAAqE,CAAC,CAAC,EAAE,gBAAgB,GAAG,MAAM,CAEjH;AAED,qBAAa,UAAU;;IAGnB,MAAM,CAAC,iBAAiB,CAAC,CAAC,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM;IAG9D,MAAM,CAAC,iBAAiB,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ;IAGnF,MAAM,CAAC,iBAAiB,CAAC,CAAC,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM;IAG9D,MAAM,CAAC,iBAAiB,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ;IAGnF,MAAM,CAAC,oBAAoB,CAAC,CAAC,EAAE,WAAW,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM;IAGpE,MAAM,CAAC,oBAAoB,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW;IAGzF,MAAM,CAAC,eAAe,CAAC,CAAC,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM;IAG1D,MAAM,CAAC,eAAe,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM;IAG/E,MAAM,CAAC,yBAAyB,CAAC,CAAC,EAAE,gBAAgB,EAAE,EAAE,CAAC,EAAE,UAAU,EAAE,cAAc,CAAC,EAAE,OAAO,GAAG,MAAM;IAGxG,MAAM,CAAC,yBAAyB,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,gBAAgB;CAGtG;AAED,wBAAgB,sBAAsB,IAAI,QAAQ,CAEjD"}
1
+ {"version":3,"file":"Conversion.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/Conversion.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,MAAM,EAAU,MAAM,uCAAuC,CAAC;AACvE,OAAO,EAAE,gBAAgB,EAAE,MAAM,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAC/F,OAAO,EAAE,UAAU,EAAE,MAAM,4BAA4B,CAAC;AACxD,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAKnD,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,wBAAgB,iDAAiD,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE,MAAM,CAAC,UAAU,CAAC,GAAG,MAAM,CAEjH;AAED,wBAAgB,2DAA2D,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAErI;AAED,wBAAgB,iDAAiD,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE,MAAM,CAAC,UAAU,CAAC,GAAG,MAAM,CAEjH;AAED,wBAAgB,2DAA2D,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAErI;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,WAAW,EAAE,EAAE,EAAE,MAAM,CAAC,UAAU,CAAC,GAAG,MAAM,CAE7H;AAED,wBAAgB,oEAAoE,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW,CAEjJ;AAED,wBAAgB,2CAA2C,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,CAAC,UAAU,CAAC,GAAG,MAAM,CAEzG;AAED,wBAAgB,qDAAqD,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAE7H;AAED,wBAAgB,0EAA0E,CAAC,KAAK,EAAE,gBAAgB,EAAE,EAAE,EAAE,MAAM,CAAC,UAAU,CAAC,EAAE,cAAc,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,MAAM,CAEnL;AAED,wBAAgB,mFAAmF,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,gBAAgB,CAErK;AAED,qBAAa,OAAO;;CAGnB;AAED,wBAAgB,mBAAmB,IAAI,QAAQ,CAE9C;AAED,wBAAgB,4BAA4B,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAEtG;AAED,wBAAgB,6BAA6B,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAEjE;AAED,wBAAgB,4BAA4B,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAEtG;AAED,wBAAgB,6BAA6B,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAEjE;AAED,wBAAgB,+BAA+B,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW,CAE5G;AAED,wBAAgB,iCAAiC,CAAC,CAAC,EAAE,WAAW,GAAG,MAAM,CAExE;AAED,wBAAgB,0BAA0B,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAElG;AAED,wBAAgB,4BAA4B,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED,wBAAgB,oCAAoC,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,gBAAgB,CAEtH;AAED,wBAAgB,sCAAsC,CAAC,CAAC,EAAE,gBAAgB,GAAG,MAAM,CAElF;AAED,qBAAa,UAAU;;IAGnB,MAAM,CAAC,iBAAiB,CAAC,CAAC,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM;IAG9D,MAAM,CAAC,iBAAiB,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ;IAGnF,MAAM,CAAC,iBAAiB,CAAC,CAAC,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM;IAG9D,MAAM,CAAC,iBAAiB,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ;IAGnF,MAAM,CAAC,oBAAoB,CAAC,CAAC,EAAE,WAAW,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM;IAGpE,MAAM,CAAC,oBAAoB,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,WAAW;IAGzF,MAAM,CAAC,eAAe,CAAC,CAAC,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM;IAG1D,MAAM,CAAC,eAAe,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM;IAG/E,MAAM,CAAC,yBAAyB,CAAC,CAAC,EAAE,gBAAgB,EAAE,EAAE,CAAC,EAAE,UAAU,EAAE,cAAc,CAAC,EAAE,OAAO,GAAG,MAAM;IAGxG,MAAM,CAAC,yBAAyB,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,gBAAgB;CAGtG;AAED,wBAAgB,sBAAsB,IAAI,QAAQ,CAEjD"}
@@ -36,34 +36,41 @@ function ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E
36
36
  function ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a, graph, context) {
37
37
  return InvestigationConversion_decomposeInvestigation_Z6839B9E8(a, unwrap(graph), unwrap(context));
38
38
  }
39
- function ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8(a, graph, context) {
39
+ class Dataset {
40
+ constructor() {
41
+ }
42
+ }
43
+ function Dataset_$reflection() {
44
+ return class_type("ARCtrl.Conversion.TypeExtensions.Dataset", void 0, Dataset);
45
+ }
46
+ function Dataset_toArcAssay_Z6839B9E8(a, graph, context) {
40
47
  return AssayConversion_decomposeAssay_Z6839B9E8(a, unwrap(graph), unwrap(context));
41
48
  }
42
- function ARCtrl_ROCrate_Dataset__Dataset_fromArcAssay_Static_1501C0F8(a) {
49
+ function Dataset_fromArcAssay_1501C0F8(a) {
43
50
  return AssayConversion_composeAssay_Z5C53FD5C(a);
44
51
  }
45
- function ARCtrl_ROCrate_Dataset__Dataset_toArcStudy_Static_Z6839B9E8(a, graph, context) {
52
+ function Dataset_toArcStudy_Z6839B9E8(a, graph, context) {
46
53
  return StudyConversion_decomposeStudy_Z6839B9E8(a, unwrap(graph), unwrap(context));
47
54
  }
48
- function ARCtrl_ROCrate_Dataset__Dataset_fromArcStudy_Static_1680536E(a) {
55
+ function Dataset_fromArcStudy_1680536E(a) {
49
56
  return StudyConversion_composeStudy_ZFE0E38E(a);
50
57
  }
51
- function ARCtrl_ROCrate_Dataset__Dataset_toArcWorkflow_Static_Z6839B9E8(a, graph, context) {
58
+ function Dataset_toArcWorkflow_Z6839B9E8(a, graph, context) {
52
59
  return WorkflowConversion_decomposeWorkflow_Z6839B9E8(a, unwrap(graph), unwrap(context));
53
60
  }
54
- function ARCtrl_ROCrate_Dataset__Dataset_fromArcWorkflow_Static_Z1C75CB0E(a) {
61
+ function Dataset_fromArcWorkflow_Z1C75CB0E(a) {
55
62
  return WorkflowConversion_composeWorkflow_42450E6E(a);
56
63
  }
57
- function ARCtrl_ROCrate_Dataset__Dataset_toArcRun_Static_Z6839B9E8(a, graph, context) {
64
+ function Dataset_toArcRun_Z6839B9E8(a, graph, context) {
58
65
  return RunConversion_decomposeRun_Z6839B9E8(a, unwrap(graph), unwrap(context));
59
66
  }
60
- function ARCtrl_ROCrate_Dataset__Dataset_fromArcRun_Static_Z3EFAF6F8(a) {
67
+ function Dataset_fromArcRun_Z3EFAF6F8(a) {
61
68
  return RunConversion_composeRun_Z8CC08AC(a);
62
69
  }
63
- function ARCtrl_ROCrate_Dataset__Dataset_toArcInvestigation_Static_Z6839B9E8(a, graph, context) {
70
+ function Dataset_toArcInvestigation_Z6839B9E8(a, graph, context) {
64
71
  return InvestigationConversion_decomposeInvestigation_Z6839B9E8(a, unwrap(graph), unwrap(context));
65
72
  }
66
- function ARCtrl_ROCrate_Dataset__Dataset_fromArcInvestigation_Static_Z720BD3FF(a) {
73
+ function Dataset_fromArcInvestigation_Z720BD3FF(a) {
67
74
  return InvestigationConversion_composeInvestigation_Z284BC0AC(a);
68
75
  }
69
76
  class Conversion {
@@ -104,4 +111,4 @@ function Conversion_$reflection() {
104
111
  return class_type("ARCtrl.Conversion.TypeExtensions.Conversion", void 0, Conversion);
105
112
  }
106
113
 
107
- export { ARCtrl_ArcAssay__ArcAssay_ToROCrateAssay_1695DD5C, ARCtrl_ArcAssay__ArcAssay_fromROCrateAssay_Static_Z6839B9E8, ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B, ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8, ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C, ARCtrl_ArcRun__ArcRun_fromROCrateRun_Static_Z6839B9E8, ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy_1695DD5C, ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8, ARCtrl_ArcWorkflow__ArcWorkflow_ToROCrateWorkflow_1695DD5C, ARCtrl_ArcWorkflow__ArcWorkflow_fromROCrateWorkflow_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_fromArcAssay_Static_1501C0F8, ARCtrl_ROCrate_Dataset__Dataset_fromArcInvestigation_Static_Z720BD3FF, ARCtrl_ROCrate_Dataset__Dataset_fromArcRun_Static_Z3EFAF6F8, ARCtrl_ROCrate_Dataset__Dataset_fromArcStudy_Static_1680536E, ARCtrl_ROCrate_Dataset__Dataset_fromArcWorkflow_Static_Z1C75CB0E, ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_toArcInvestigation_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_toArcRun_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_toArcStudy_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_toArcWorkflow_Static_Z6839B9E8, Conversion, Conversion_$reflection };
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+ export { ARCtrl_ArcAssay__ArcAssay_ToROCrateAssay_1695DD5C, ARCtrl_ArcAssay__ArcAssay_fromROCrateAssay_Static_Z6839B9E8, ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B, ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8, ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C, ARCtrl_ArcRun__ArcRun_fromROCrateRun_Static_Z6839B9E8, ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy_1695DD5C, ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8, ARCtrl_ArcWorkflow__ArcWorkflow_ToROCrateWorkflow_1695DD5C, ARCtrl_ArcWorkflow__ArcWorkflow_fromROCrateWorkflow_Static_Z6839B9E8, Conversion, Conversion_$reflection, Dataset, Dataset_$reflection, Dataset_fromArcAssay_1501C0F8, Dataset_fromArcInvestigation_Z720BD3FF, Dataset_fromArcRun_Z3EFAF6F8, Dataset_fromArcStudy_1680536E, Dataset_fromArcWorkflow_Z1C75CB0E, Dataset_toArcAssay_Z6839B9E8, Dataset_toArcInvestigation_Z6839B9E8, Dataset_toArcRun_Z6839B9E8, Dataset_toArcStudy_Z6839B9E8, Dataset_toArcWorkflow_Z6839B9E8 };