@nfdi4plants/arctrl 3.0.0-beta.8 → 3.0.0

package/dist/ts/ts/CWL/CWLTypes.js

@@ -0,0 +1,384 @@
+import { Union, Record } from '../../node_modules/@fable-org/fable-library-js/Types.js';
+import { union_type, string_type, class_type, record_type, option_type, bool_type, array_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
+import { toText, printf } from '../../node_modules/@fable-org/fable-library-js/String.js';
+import { identityHash, equals, arrayHash, safeHash, numberHash } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
+import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { forAll2, toList, map } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+
+function SchemaSaladString_Literal(Item) {
+  return new SchemaSaladString(0, [Item]);
+}
+function SchemaSaladString_Include(Item) {
+  return new SchemaSaladString(1, [Item]);
+}
+function SchemaSaladString_Import(Item) {
+  return new SchemaSaladString(2, [Item]);
+}
+class SchemaSaladString extends Union {
+  constructor(tag, fields) {
+    super();
+    this.tag = tag;
+    this.fields = fields;
+  }
+  cases() {
+    return ["Literal", "Include", "Import"];
+  }
+}
+function SchemaSaladString_$reflection() {
+  return union_type("ARCtrl.CWL.SchemaSaladString", [], SchemaSaladString, () => [[["Item", string_type]], [["Item", string_type]], [["Item", string_type]]]);
+}
+function SchemaSaladString__get_Value(this$) {
+  let value;
+  switch (this$.tag) {
+    case /* Include */
+    1: {
+      value = this$.fields[0];
+      break;
+    }
+    case /* Import */
+    2: {
+      value = this$.fields[0];
+      break;
+    }
+    default:
+      value = this$.fields[0];
+  }
+  return value;
+}
+function SchemaSaladString__get_AsDirectiveString(this$) {
+  switch (this$.tag) {
+    case /* Include */
+    1: {
+      const value_1 = this$.fields[0];
+      return toText(printf("$include: %s"))(value_1);
+    }
+    case /* Import */
+    2: {
+      const value_2 = this$.fields[0];
+      return toText(printf("$import: %s"))(value_2);
+    }
+    default:
+      return this$.fields[0];
+  }
+}
+function SchemaSaladStringModule_literal(value) {
+  return SchemaSaladString_Literal(value);
+}
+function SchemaSaladStringModule_includePath(value) {
+  return SchemaSaladString_Include(value);
+}
+function SchemaSaladStringModule_importPath(value) {
+  return SchemaSaladString_Import(value);
+}
+function SchemaSaladStringModule_value(saladString) {
+  return SchemaSaladString__get_Value(saladString);
+}
+function SchemaSaladStringModule_toDirectiveString(saladString) {
+  return SchemaSaladString__get_AsDirectiveString(saladString);
+}
+class FileInstance extends DynamicObj {
+  constructor() {
+    super();
+  }
+  GetHashCode() {
+    const this$ = this;
+    return identityHash(this$.DeepCopyProperties()) | 0;
+  }
+  Equals(o) {
+    let o_1;
+    const this$ = this;
+    return o instanceof FileInstance && (o_1 = o, this$.StructurallyEquals(o_1));
+  }
+}
+function FileInstance_$reflection() {
+  return class_type("ARCtrl.CWL.FileInstance", void 0, FileInstance, DynamicObj_$reflection());
+}
+function FileInstance_$ctor() {
+  return new FileInstance();
+}
+class DirectoryInstance extends DynamicObj {
+  constructor() {
+    super();
+  }
+  Equals(o) {
+    let o_1;
+    const this$ = this;
+    return o instanceof DirectoryInstance && (o_1 = o, this$.StructurallyEquals(o_1));
+  }
+  GetHashCode() {
+    const this$ = this;
+    return identityHash(this$.DeepCopyProperties()) | 0;
+  }
+}
+function DirectoryInstance_$reflection() {
+  return class_type("ARCtrl.CWL.DirectoryInstance", void 0, DirectoryInstance, DynamicObj_$reflection());
+}
+function DirectoryInstance_$ctor() {
+  return new DirectoryInstance();
+}
+class DirentInstance extends Record {
+  constructor(Entry, Entryname, Writable) {
+    super();
+    this.Entry = Entry;
+    this.Entryname = Entryname;
+    this.Writable = Writable;
+  }
+}
+function DirentInstance_$reflection() {
+  return record_type("ARCtrl.CWL.DirentInstance", [], DirentInstance, () => [["Entry", SchemaSaladString_$reflection()], ["Entryname", option_type(SchemaSaladString_$reflection())], ["Writable", option_type(bool_type)]]);
+}
+class InputEnumSchema extends Record {
+  constructor(Symbols, Label, Doc, Name) {
+    super();
+    this.Symbols = Symbols;
+    this.Label = Label;
+    this.Doc = Doc;
+    this.Name = Name;
+  }
+  Equals(o) {
+    let other;
+    const this$ = this;
+    return o instanceof InputEnumSchema && (other = o, equals(this$.Label, other.Label) && equals(this$.Doc, other.Doc) && equals(this$.Name, other.Name) && this$.Symbols.length === other.Symbols.length && forAll2((x, y) => x === y, this$.Symbols, other.Symbols));
+  }
+  GetHashCode() {
+    const this$ = this;
+    return arrayHash([toList(this$.Symbols), this$.Label, this$.Doc, this$.Name]) | 0;
+  }
+}
+function InputEnumSchema_$reflection() {
+  return record_type("ARCtrl.CWL.InputEnumSchema", [], InputEnumSchema, () => [["Symbols", array_type(string_type)], ["Label", option_type(string_type)], ["Doc", option_type(string_type)], ["Name", option_type(string_type)]]);
+}
+class InputRecordField extends Record {
+  constructor(Name, Type, Doc, Label) {
+    super();
+    this.Name = Name;
+    this.Type = Type;
+    this.Doc = Doc;
+    this.Label = Label;
+  }
+  Equals(o) {
+    let other;
+    const this$ = this;
+    return o instanceof InputRecordField && (other = o, this$.Name === other.Name && equals(this$.Type, other.Type) && equals(this$.Doc, other.Doc) && equals(this$.Label, other.Label));
+  }
+  GetHashCode() {
+    const this$ = this;
+    return arrayHash([this$.Name, this$.Type, this$.Doc, this$.Label]) | 0;
+  }
+}
+function InputRecordField_$reflection() {
+  return record_type("ARCtrl.CWL.InputRecordField", [], InputRecordField, () => [["Name", string_type], ["Type", CWLType_$reflection()], ["Doc", option_type(string_type)], ["Label", option_type(string_type)]]);
+}
+class InputRecordSchema extends Record {
+  constructor(Fields, Label, Doc, Name) {
+    super();
+    this.Fields = Fields;
+    this.Label = Label;
+    this.Doc = Doc;
+    this.Name = Name;
+  }
+  Equals(o) {
+    const this$ = this;
+    if (o instanceof InputRecordSchema) {
+      const other = o;
+      if (equals(this$.Label, other.Label) && equals(this$.Doc, other.Doc) && equals(this$.Name, other.Name)) {
+        const matchValue = this$.Fields;
+        const matchValue_1 = other.Fields;
+        let matchResult, f1, f2;
+        if (matchValue != null) {
+          if (matchValue_1 != null) {
+            matchResult = 1;
+            f1 = value(matchValue);
+            f2 = value(matchValue_1);
+          } else {
+            matchResult = 2;
+          }
+        } else if (matchValue_1 == null) {
+          matchResult = 0;
+        } else {
+          matchResult = 2;
+        }
+        switch (matchResult) {
+          case 0:
+            return true;
+          case 1:
+            return f1.length === f2.length && forAll2(equals, f1, f2);
+          default:
+            return false;
+        }
+      } else {
+        return false;
+      }
+    } else {
+      return false;
+    }
+  }
+  GetHashCode() {
+    const this$ = this;
+    return arrayHash([this$.Fields, this$.Label, this$.Doc, this$.Name]) | 0;
+  }
+}
+function InputRecordSchema_$reflection() {
+  return record_type("ARCtrl.CWL.InputRecordSchema", [], InputRecordSchema, () => [["Fields", option_type(array_type(InputRecordField_$reflection()))], ["Label", option_type(string_type)], ["Doc", option_type(string_type)], ["Name", option_type(string_type)]]);
+}
+class InputArraySchema extends Record {
+  constructor(Items, Label, Doc, Name) {
+    super();
+    this.Items = Items;
+    this.Label = Label;
+    this.Doc = Doc;
+    this.Name = Name;
+  }
+  Equals(o) {
+    let other;
+    const this$ = this;
+    return o instanceof InputArraySchema && (other = o, equals(this$.Items, other.Items) && equals(this$.Label, other.Label) && equals(this$.Doc, other.Doc) && equals(this$.Name, other.Name));
+  }
+  GetHashCode() {
+    const this$ = this;
+    return arrayHash([this$.Items, this$.Label, this$.Doc, this$.Name]) | 0;
+  }
+}
+function InputArraySchema_$reflection() {
+  return record_type("ARCtrl.CWL.InputArraySchema", [], InputArraySchema, () => [["Items", CWLType_$reflection()], ["Label", option_type(string_type)], ["Doc", option_type(string_type)], ["Name", option_type(string_type)]]);
+}
+function CWLType_File(Item) {
+  return new CWLType(0, [Item]);
+}
+function CWLType_Directory(Item) {
+  return new CWLType(1, [Item]);
+}
+function CWLType_Dirent(Item) {
+  return new CWLType(2, [Item]);
+}
+function CWLType_String() {
+  return new CWLType(3, []);
+}
+function CWLType_Int() {
+  return new CWLType(4, []);
+}
+function CWLType_Long() {
+  return new CWLType(5, []);
+}
+function CWLType_Float() {
+  return new CWLType(6, []);
+}
+function CWLType_Double() {
+  return new CWLType(7, []);
+}
+function CWLType_Boolean() {
+  return new CWLType(8, []);
+}
+function CWLType_Stdout() {
+  return new CWLType(9, []);
+}
+function CWLType_Null() {
+  return new CWLType(10, []);
+}
+function CWLType_Array(Item) {
+  return new CWLType(11, [Item]);
+}
+function CWLType_Record(Item) {
+  return new CWLType(12, [Item]);
+}
+function CWLType_Enum(Item) {
+  return new CWLType(13, [Item]);
+}
+function CWLType_Union(Item) {
+  return new CWLType(14, [Item]);
+}
+class CWLType extends Union {
+  constructor(tag, fields) {
+    super();
+    this.tag = tag;
+    this.fields = fields;
+  }
+  cases() {
+    return ["File", "Directory", "Dirent", "String", "Int", "Long", "Float", "Double", "Boolean", "Stdout", "Null", "Array", "Record", "Enum", "Union"];
+  }
+  Equals(o) {
+    let other, d1, d2, di1, di2, a1, a2, r1, r2, e1, e2, u1, u2, f1, f2;
+    const this$ = this;
+    return o instanceof CWLType && (other = o, this$.tag === /* Directory */
+    1 ? other.tag === /* Directory */
+    1 && (d1 = this$.fields[0], d2 = other.fields[0], equals(d1, d2)) : this$.tag === /* Dirent */
+    2 ? other.tag === /* Dirent */
+    2 && (di1 = this$.fields[0], di2 = other.fields[0], equals(di1, di2)) : this$.tag === /* String */
+    3 ? other.tag === /* String */
+    3 : this$.tag === /* Int */
+    4 ? other.tag === /* Int */
+    4 : this$.tag === /* Long */
+    5 ? other.tag === /* Long */
+    5 : this$.tag === /* Float */
+    6 ? other.tag === /* Float */
+    6 : this$.tag === /* Double */
+    7 ? other.tag === /* Double */
+    7 : this$.tag === /* Boolean */
+    8 ? other.tag === /* Boolean */
+    8 : this$.tag === /* Stdout */
+    9 ? other.tag === /* Stdout */
+    9 : this$.tag === /* Null */
+    10 ? other.tag === /* Null */
+    10 : this$.tag === /* Array */
+    11 ? other.tag === /* Array */
+    11 && (a1 = this$.fields[0], a2 = other.fields[0], equals(a1, a2)) : this$.tag === /* Record */
+    12 ? other.tag === /* Record */
+    12 && (r1 = this$.fields[0], r2 = other.fields[0], equals(r1, r2)) : this$.tag === /* Enum */
+    13 ? other.tag === /* Enum */
+    13 && (e1 = this$.fields[0], e2 = other.fields[0], equals(e1, e2)) : this$.tag === /* Union */
+    14 ? other.tag === /* Union */
+    14 && (u1 = this$.fields[0], u2 = other.fields[0], u1.length === u2.length && forAll2(equals, u1, u2)) : other.tag === /* File */
+    0 && (f1 = this$.fields[0], f2 = other.fields[0], equals(f1, f2)));
+  }
+  GetHashCode() {
+    const this$ = this;
+    return (this$.tag === /* Directory */
+    1 ? arrayHash([1, safeHash(this$.fields[0])]) : this$.tag === /* Dirent */
+    2 ? arrayHash([2, this$.fields[0]]) : this$.tag === /* String */
+    3 ? numberHash(3) : this$.tag === /* Int */
+    4 ? numberHash(4) : this$.tag === /* Long */
+    5 ? numberHash(5) : this$.tag === /* Float */
+    6 ? numberHash(6) : this$.tag === /* Double */
+    7 ? numberHash(7) : this$.tag === /* Boolean */
+    8 ? numberHash(8) : this$.tag === /* Stdout */
+    9 ? numberHash(9) : this$.tag === /* Null */
+    10 ? numberHash(10) : this$.tag === /* Array */
+    11 ? arrayHash([11, this$.fields[0]]) : this$.tag === /* Record */
+    12 ? arrayHash([12, this$.fields[0]]) : this$.tag === /* Enum */
+    13 ? arrayHash([13, this$.fields[0]]) : this$.tag === /* Union */
+    14 ? arrayHash([14, toList(map(safeHash, this$.fields[0]))]) : arrayHash([0, safeHash(this$.fields[0])])) | 0;
+  }
+}
+function CWLType_$reflection() {
+  return union_type("ARCtrl.CWL.CWLType", [], CWLType, () => [[["Item", FileInstance_$reflection()]], [["Item", DirectoryInstance_$reflection()]], [["Item", DirentInstance_$reflection()]], [], [], [], [], [], [], [], [], [["Item", InputArraySchema_$reflection()]], [["Item", InputRecordSchema_$reflection()]], [["Item", InputEnumSchema_$reflection()]], [["Item", array_type(CWLType_$reflection())]]]);
+}
+function CWLType_file() {
+  return CWLType_File(FileInstance_$ctor());
+}
+function CWLType_directory() {
+  return CWLType_Directory(DirectoryInstance_$ctor());
+}
+class SchemaDefRequirementType extends Record {
+  constructor(Name, Type_) {
+    super();
+    this.Name = Name;
+    this.Type_ = Type_;
+  }
+}
+function SchemaDefRequirementType_$reflection() {
+  return record_type("ARCtrl.CWL.SchemaDefRequirementType", [], SchemaDefRequirementType, () => [["Name", string_type], ["Type_", CWLType_$reflection()]]);
+}
+class SoftwarePackage extends Record {
+  constructor(Package, Version, Specs) {
+    super();
+    this.Package = Package;
+    this.Version = Version;
+    this.Specs = Specs;
+  }
+}
+function SoftwarePackage_$reflection() {
+  return record_type("ARCtrl.CWL.SoftwarePackage", [], SoftwarePackage, () => [["Package", string_type], ["Version", option_type(array_type(string_type))], ["Specs", option_type(array_type(string_type))]]);
+}
+
+export { CWLType, CWLType_$reflection, CWLType_Array, CWLType_Boolean, CWLType_Directory, CWLType_Dirent, CWLType_Double, CWLType_Enum, CWLType_File, CWLType_Float, CWLType_Int, CWLType_Long, CWLType_Null, CWLType_Record, CWLType_Stdout, CWLType_String, CWLType_Union, CWLType_directory, CWLType_file, DirectoryInstance, DirectoryInstance_$ctor, DirectoryInstance_$reflection, DirentInstance, DirentInstance_$reflection, FileInstance, FileInstance_$ctor, FileInstance_$reflection, InputArraySchema, InputArraySchema_$reflection, InputEnumSchema, InputEnumSchema_$reflection, InputRecordField, InputRecordField_$reflection, InputRecordSchema, InputRecordSchema_$reflection, SchemaDefRequirementType, SchemaDefRequirementType_$reflection, SchemaSaladString, SchemaSaladStringModule_importPath, SchemaSaladStringModule_includePath, SchemaSaladStringModule_literal, SchemaSaladStringModule_toDirectiveString, SchemaSaladStringModule_value, SchemaSaladString_$reflection, SchemaSaladString_Import, SchemaSaladString_Include, SchemaSaladString_Literal, SchemaSaladString__get_AsDirectiveString, SchemaSaladString__get_Value, SoftwarePackage, SoftwarePackage_$reflection };

package/dist/ts/ts/CWL/Decode.d.ts

@@ -0,0 +1,210 @@
+import { IMap } from '@fable-org/fable-library-js/Util.js';
+import { FSharpList } from '@fable-org/fable-library-js/List.js';
+import { YAMLElement_$union } from '../fable_modules/YAMLicious.1.0.0-alpha.3/YAMLiciousTypes.fs.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { IGetters } from '../fable_modules/YAMLicious.1.0.0-alpha.3/Decode.fs.js';
+import { DynamicObj } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
+import { SchemaDefRequirementType, SoftwarePackage, InputEnumSchema, InputRecordSchema, InputRecordField, InputArraySchema, CWLType_$union, SchemaSaladString_$union } from './CWLTypes.js';
+import { CWLOutput, OutputBinding } from './Outputs.js';
+import { HintEntry_$union, InlineJavascriptRequirementValue, ToolTimeLimitValue_$union, InplaceUpdateRequirementValue, Requirement_$union, ResourceRequirementInstance, LoadListingRequirementValue, EnvironmentDef, DockerRequirement, InitialWorkDirEntry_$union } from './Requirements.js';
+import { CWLInput, InputBinding } from './Inputs.js';
+import { WorkflowStep, WorkflowStepRun_$union, StepOutput_$union, StepInput, ScatterMethod_$union, PickValueMethod_$union, LinkMergeMethod_$union } from './WorkflowSteps.js';
+import { CWLProcessingUnit_$union } from './CWLProcessingUnit.js';
+import { CWLToolDescription } from './ToolDescription.js';
+import { CWLExpressionToolDescription } from './ExpressionToolDescription.js';
+import { CWLOperationDescription } from './OperationDescription.js';
+import { CWLWorkflowDescription } from './WorkflowDescription.js';
+import { CWLParameterReference } from './ParameterReference.js';
+export declare function ResizeArray_map<$a, $b>(f: ((arg0: $a) => $b), a: $a[]): $b[];
+export declare function Decode_normalizeYamlInput(yaml: string): string;
+export declare function Decode_removeFullLineComments(yaml: string): string;
+export declare function Decode_removeYamlComments(yamlElement: YAMLElement_$union): YAMLElement_$union;
+/**
+ * Determines if an exception represents a recoverable decoding error.
+ * Returns true for schema mismatches; false for system errors that should propagate.
+ */
+export declare function Decode_isRecoverableDecodingError(ex: Error): boolean;
+export declare function Decode_readSanitizedYaml(yaml: string): YAMLElement_$union;
+/**
+ * Decode key value pairs into a dynamic object, while preserving their tree structure
+ */
+export declare function Decode_overflowDecoder(dynObj: DynamicObj, dict: IMap<string, YAMLElement_$union>): DynamicObj;
+/**
+ * Decode scalar schema-salad string fields.
+ * Recognized directive wrappers are `$include` and `$import`.
+ * Unknown single-key mappings are intentionally coerced to a legacy literal `key: value` string.
+ */
+export declare function Decode_decodeSchemaSaladString(yEle: YAMLElement_$union): SchemaSaladString_$union;
+/**
+ * Decode a YAMLElement which is either a string or expression into a string.
+ * Directive objects such as {$include: path} are represented using legacy string form.
+ */
+export declare function Decode_decodeStringOrExpression(yEle: YAMLElement_$union): string;
+export declare const Decode_outputBindingGlobDecoder: (value_1: YAMLElement_$union) => OutputBinding;
+export declare const Decode_outputBindingDecoder: (value: YAMLElement_$union) => Option<OutputBinding>;
+export declare function Decode_decodeStringArrayOrScalar(value: YAMLElement_$union): string[];
+export declare const Decode_outputSourceDecoder: (value_1: YAMLElement_$union) => Option<string[]>;
+export declare const Decode_direntDecoder: (value_1: YAMLElement_$union) => CWLType_$union;
+/**
+ * Decode a listing entry of InitialWorkDirRequirement.
+ * Supports both Dirent object form and string/expression form.
+ */
+export declare function Decode_initialWorkDirEntryDecoder(value: YAMLElement_$union): InitialWorkDirEntry_$union;
+/**
+ * Decode the contained type of a CWL Array
+ */
+export declare function Decode_cwlSimpleTypeFromString(s: string): CWLType_$union;
+/**
+ * Recursively parse array shorthand notation (File[][], string[][][], etc.)
+ */
+export declare function Decode_parseArrayShorthand(typeStr: string): Option<CWLType_$union>;
+export declare function inputArraySchemaDecoder$0040261(): ((arg0: YAMLElement_$union) => InputArraySchema);
+export declare const inputArraySchemaDecoder$0040261$002D1: any;
+export declare function inputRecordFieldDecoder$0040275(): ((arg0: YAMLElement_$union) => InputRecordField);
+export declare const inputRecordFieldDecoder$0040275$002D1: any;
+export declare function inputRecordSchemaDecoder$0040314(): ((arg0: YAMLElement_$union) => InputRecordSchema);
+export declare const inputRecordSchemaDecoder$0040314$002D1: any;
+export declare function inputEnumSchemaDecoder$0040341(): ((arg0: YAMLElement_$union) => InputEnumSchema);
+export declare const inputEnumSchemaDecoder$0040341$002D1: any;
+export declare const Decode_inputArraySchemaDecoder: ((arg0: YAMLElement_$union) => InputArraySchema);
+export declare const Decode_inputRecordFieldDecoder: ((arg0: YAMLElement_$union) => InputRecordField);
+/**
+ * Attempt to decode fields as flow-style array: [{name: x, type: y}]
+ */
+export declare function Decode_tryDecodeFieldsAsArray(element: YAMLElement_$union): Option<InputRecordField[]>;
+/**
+ * Attempt to decode fields as map-style: {fieldName: type}
+ */
+export declare function Decode_tryDecodeFieldsAsMap(element: YAMLElement_$union): Option<InputRecordField[]>;
+export declare const Decode_inputRecordSchemaDecoder: ((arg0: YAMLElement_$union) => InputRecordSchema);
+export declare const Decode_inputEnumSchemaDecoder: ((arg0: YAMLElement_$union) => InputEnumSchema);
+/**
+ * Decode a CWLType from a YAMLElement (handles all types including complex schemas)
+ */
+export declare function Decode_cwlTypeDecoder$0027(element: YAMLElement_$union): CWLType_$union;
+/**
+ * Match the input string to the possible CWL types and checks if it is optional
+ */
+export declare function Decode_cwlTypeStringMatcher(t: string, get$: IGetters): [CWLType_$union, boolean];
+export declare const Decode_cwlTypeDecoder: (value_1: YAMLElement_$union) => [CWLType_$union, boolean];
+export declare const Decode_outputArrayDecoder: (value_1: YAMLElement_$union) => CWLOutput[];
+export declare const Decode_outputsDecoder: (value: YAMLElement_$union) => CWLOutput[];
+/**
+ * Decode a YAMLElement into a DockerRequirement
+ */
+export declare function Decode_dockerRequirementDecoder(get$: IGetters): DockerRequirement;
+/**
+ * Decode a YAMLElement into an EnvVarRequirement array.
+ * Supports both array form and map shorthand form (envName -> envValue).
+ */
+export declare function Decode_envVarRequirementDecoder(get$: IGetters): EnvironmentDef[];
+/**
+ * Decode a YAMLElement into a SoftwareRequirement array.
+ * Supports both array form and map shorthand form.
+ */
+export declare function Decode_softwareRequirementDecoder(get$: IGetters): SoftwarePackage[];
+/**
+ * Decode a YAMLElement into an InitialWorkDirRequirement array.
+ * Supports both string/expression and Dirent listing items.
+ */
+export declare function Decode_initialWorkDirRequirementDecoder(get$: IGetters): InitialWorkDirEntry_$union[];
+export declare function Decode_loadListingRequirementDecoder(get$: IGetters): LoadListingRequirementValue;
+export declare function Decode_decodeResourceScalar(element: YAMLElement_$union): any;
+export declare function Decode_optionalResourceField(get$: IGetters, fieldName: string): Option<any>;
+/**
+ * Decode a YAMLElement into a ResourceRequirementInstance
+ */
+export declare function Decode_resourceRequirementDecoder(get$: IGetters): ResourceRequirementInstance;
+export declare function Decode_schemaDefRequirementTypeDecoder(value: YAMLElement_$union): SchemaDefRequirementType;
+/**
+ * Decode a YAMLElement into a SchemaDefRequirementType array
+ */
+export declare function Decode_schemaDefRequirementDecoder(get$: IGetters): SchemaDefRequirementType[];
+export declare function Decode_tryDecodeBoolScalar(element: YAMLElement_$union): Option<boolean>;
+export declare function Decode_workReuseRequirementDecoder(get$: IGetters): Requirement_$union;
+export declare function Decode_networkAccessRequirementDecoder(get$: IGetters): Requirement_$union;
+export declare function Decode_inplaceUpdateRequirementDecoder(get$: IGetters): InplaceUpdateRequirementValue;
+/**
+ * Decode a YAMLElement into a ToolTimeLimitRequirement value
+ */
+export declare function Decode_toolTimeLimitRequirementDecoder(get$: IGetters): ToolTimeLimitValue_$union;
+export declare function Decode_inlineJavascriptRequirementDecoder(get$: IGetters): InlineJavascriptRequirementValue;
+/**
+ * Decode all YAMLElements matching the Requirement type into a ResizeArray of Requirement
+ */
+export declare function Decode_requirementFromTypeName(cls: string, get$: IGetters): Requirement_$union;
+export declare function Decode_requirementArrayDecoder(yEle: YAMLElement_$union): Requirement_$union[];
+export declare function Decode_tryDecodeKnownRequirementFromElement(element: YAMLElement_$union): Option<Requirement_$union>;
+export declare function Decode_decodeHintElement(element: YAMLElement_$union): HintEntry_$union;
+export declare function Decode_hintArrayDecoder(yEle: YAMLElement_$union): HintEntry_$union[];
+export declare const Decode_requirementsDecoder: (value: YAMLElement_$union) => Option<Requirement_$union[]>;
+export declare const Decode_hintsDecoder: (value: YAMLElement_$union) => Option<HintEntry_$union[]>;
+export declare const Decode_inputBindingDecoder: (value_5: YAMLElement_$union) => Option<InputBinding>;
+export declare const Decode_inputArrayDecoder: (value_1: YAMLElement_$union) => CWLInput[];
+export declare const Decode_inputsDecoder: (value: YAMLElement_$union) => Option<CWLInput[]>;
+export declare const Decode_baseCommandDecoder: (value_2: YAMLElement_$union) => Option<string[]>;
+export declare const Decode_versionDecoder: (value_1: YAMLElement_$union) => string;
+export declare const Decode_classDecoder: (value_1: YAMLElement_$union) => string;
+export declare function Decode_stringOptionFieldDecoder(field: string): ((arg0: YAMLElement_$union) => Option<string>);
+export declare function Decode_boolOptionFieldDecoder(field: string): ((arg0: YAMLElement_$union) => Option<boolean>);
+export declare function Decode_yamlElementOptionFieldDecoder(field: string): ((arg0: YAMLElement_$union) => Option<YAMLElement_$union>);
+export declare function Decode_stringFieldDecoder(field: string): ((arg0: YAMLElement_$union) => string);
+/**
+ * Decode a YAMLElement that may be a single string or an array of strings.
+ */
+export declare function Decode_stringOrStringArrayDecoder(value: YAMLElement_$union): Option<string[]>;
+/**
+ * Decode a YAMLElement into a ResizeArray<string> option for the source field
+ * Handles both single string values and arrays of strings
+ */
+export declare function Decode_sourceArrayFieldDecoder(field: string): ((arg0: YAMLElement_$union) => Option<string[]>);
+export declare function Decode_linkMergeFieldDecoder(field: string): ((arg0: YAMLElement_$union) => Option<LinkMergeMethod_$union>);
+export declare function Decode_pickValueFieldDecoder(field: string): ((arg0: YAMLElement_$union) => Option<PickValueMethod_$union>);
+export declare function Decode_scatterFieldDecoder(field: string): ((arg0: YAMLElement_$union) => Option<string[]>);
+export declare function Decode_scatterMethodFieldDecoder(field: string): ((arg0: YAMLElement_$union) => Option<ScatterMethod_$union>);
+export declare function Decode_expressionStringOptionFieldDecoder(field: string): ((arg0: YAMLElement_$union) => Option<string>);
+export declare function Decode_decodeStepInputFromValue(id: string, value: YAMLElement_$union, allowScalarSource: boolean): StepInput;
+export declare function Decode_decodeStepInputsFromMap(value: YAMLElement_$union): StepInput[];
+export declare function Decode_decodeStepInputFromArrayItem(item: YAMLElement_$union): StepInput;
+export declare function Decode_decodeStepInputsFromArray(items: FSharpList<YAMLElement_$union>): StepInput[];
+export declare function Decode_inputStepDecoder(value: YAMLElement_$union): StepInput[];
+export declare function Decode_decodeStepOutputItem(value: YAMLElement_$union): StepOutput_$union;
+export declare const Decode_outputStepsDecoder: (value_2: YAMLElement_$union) => StepOutput_$union[];
+export declare const Decode_docDecoder: (value_1: YAMLElement_$union) => Option<string>;
+export declare const Decode_labelDecoder: (value_1: YAMLElement_$union) => Option<string>;
+export declare const Decode_intentDecoder: (value_1: YAMLElement_$union) => Option<string[]>;
+export declare function Decode_hasField(fieldName: string, yamlElement: YAMLElement_$union): boolean;
+export declare function Decode_withDefaultCwlVersion(defaultCwlVersion: string, yamlElement: YAMLElement_$union): YAMLElement_$union;
+export declare function Decode_workflowStepRunDecoder(defaultCwlVersion: string, runValue: YAMLElement_$union): WorkflowStepRun_$union;
+export declare function Decode_decodeWorkflowStepFromValueWithId(defaultCwlVersion: string, stepId: string, value: YAMLElement_$union): WorkflowStep;
+export declare function Decode_decodeWorkflowStepFromArrayItem(defaultCwlVersion: string, item: YAMLElement_$union): WorkflowStep;
+export declare function Decode_stepArrayDecoderWithVersion(defaultCwlVersion: string, value: YAMLElement_$union): WorkflowStep[];
+export declare function Decode_stepsDecoderWithVersion(defaultCwlVersion: string): ((arg0: YAMLElement_$union) => WorkflowStep[]);
+export declare function Decode_commandLineToolDecoder(yamlCWL: YAMLElement_$union): CWLToolDescription;
+export declare function Decode_expressionToolDecoder(yamlCWL: YAMLElement_$union): CWLExpressionToolDescription;
+export declare function Decode_operationDecoder(yamlCWL: YAMLElement_$union): CWLOperationDescription;
+export declare function Decode_workflowDecoder(yamlCWL: YAMLElement_$union): CWLWorkflowDescription;
+export declare function Decode_decodeCWLProcessingUnitElement(yamlCWL: YAMLElement_$union): CWLProcessingUnit_$union;
+export declare const Decode_stepArrayDecoder: (value: YAMLElement_$union) => WorkflowStep[];
+export declare const Decode_stepsDecoder: ((arg0: YAMLElement_$union) => WorkflowStep[]);
+/**
+ * Decode a CWL file string written in the YAML format into a CWLToolDescription
+ */
+export declare function Decode_decodeCommandLineTool(cwl: string): CWLToolDescription;
+/**
+ * Decode a CWL file string written in the YAML format into a CWLWorkflowDescription
+ */
+export declare function Decode_decodeWorkflow(cwl: string): CWLWorkflowDescription;
+/**
+ * Decode a CWL file string written in the YAML format into a CWLExpressionToolDescription
+ */
+export declare function Decode_decodeExpressionTool(cwl: string): CWLExpressionToolDescription;
+/**
+ * Decode a CWL file string written in the YAML format into a CWLOperationDescription
+ */
+export declare function Decode_decodeOperation(cwl: string): CWLOperationDescription;
+export declare function Decode_decodeCWLProcessingUnit(cwl: string): CWLProcessingUnit_$union;
+export declare function DecodeParameters_cwlParameterReferenceDecoder(get$: IGetters, key: string, yEle: YAMLElement_$union): CWLParameterReference;
+export declare const DecodeParameters_cwlparameterReferenceArrayDecoder: (value: YAMLElement_$union) => CWLParameterReference[];
+export declare function DecodeParameters_decodeYAMLParameterFile(yaml: string): CWLParameterReference[];
+//# sourceMappingURL=Decode.d.ts.map

package/dist/ts/ts/CWL/Decode.d.ts.map

@@ -0,0 +1 @@
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