@nfdi4plants/arctrl 3.0.0-beta.7 → 3.0.0-beta.9

package/dist/ts/ts/Contract/ArcWorkflow.d.ts

@@ -1,6 +1,6 @@
 import { Option } from '@fable-org/fable-library-js/Option.js';
-import { ArcWorkflow } from '../Core/ArcTypes.js';
 import { Contract } from './Contract.js';
+import { ArcWorkflow } from '../Core/ArcTypes.js';
 export declare function $007CWorkflowPath$007C_$007C(input: string[]): Option<string>;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$: ArcWorkflow, WithFolder: Option<boolean>): Contract[];
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$: ArcWorkflow): Contract;

package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ArcWorkflow.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcWorkflow.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,WAAW,EAA+B,MAAM,qBAAqB,CAAC;AAC/E,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAMzC,wBAAgB,4BAA4B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B5E;AAED,wBAAgB,yDAAyD,CAAC,KAAK,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQrI;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,gEAAgE,CAAC,QAAQ,EAAE,WAAW,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAExI;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,mEAAmE,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,CA8BpH"}
+{"version":3,"file":"ArcWorkflow.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcWorkflow.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAGlD,wBAAgB,4BAA4B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B5E;AAED,wBAAgB,yDAAyD,CAAC,KAAK,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQrI;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,gEAAgE,CAAC,QAAQ,EAAE,WAAW,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAExI;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,mEAAmE,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,CA8BpH"}

package/dist/ts/ts/Contract/ArcWorkflow.js

@@ -3,7 +3,6 @@ import { combineMany, getWorkflowFolderPath } from '../FileSystem/Path.js';
 import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
 import { defaultArg, unwrap, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
 import { Workflow_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
-import { ArcWorkflow__get_Identifier } from '../Core/ArcTypes.js';
 import { Contract } from './Contract.js';
 import { ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E, ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D } from '../Spreadsheet/ArcWorkflow.js';
 import { toArray, delay, append, collect, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
@@ -35,19 +34,19 @@ function $007CWorkflowPath$007C_$007C(input) {
 }
 function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$, WithFolder) {
   const withFolder = defaultArg(WithFolder, false);
-  const path = Workflow_fileNameFromIdentifier(ArcWorkflow__get_Identifier(this$));
+  const path = Workflow_fileNameFromIdentifier(this$.Identifier);
   const c = Contract.createCreate(path, "ISA_Workflow", ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(this$));
   return toArray(delay(() => {
     let folderFS;
-    return append(withFolder ? (folderFS = FileSystemTree.createWorkflowsFolder([FileSystemTree.createWorkflowFolder(ArcWorkflow__get_Identifier(this$))]), collect((p) => p !== path && p !== "workflows/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
+    return append(withFolder ? (folderFS = FileSystemTree.createWorkflowsFolder([FileSystemTree.createWorkflowFolder(this$.Identifier)]), collect((p) => p !== path && p !== "workflows/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
   }));
 }
 function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$) {
-  const path = Workflow_fileNameFromIdentifier(ArcWorkflow__get_Identifier(this$));
+  const path = Workflow_fileNameFromIdentifier(this$.Identifier);
   return Contract.createUpdate(path, "ISA_Workflow", ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(this$));
 }
 function ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract(this$) {
-  const path = getWorkflowFolderPath(ArcWorkflow__get_Identifier(this$));
+  const path = getWorkflowFolderPath(this$.Identifier);
   return Contract.createDelete(path);
 }
 function ARCtrl_ArcWorkflow__ArcWorkflow_toDeleteContract_Static_Z1C75CB0E(workflow) {

package/dist/ts/ts/Contract/Datamap.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Datamap.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/Datamap.ts"],"names":[],"mappings":"AAIA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAEtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAEzC,OAAO,EAAqC,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAGhF,wBAAgB,2BAA2B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CAsC3E;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,MAAM,GAAG,QAAQ,CAG5H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,MAAM,GAAG,QAAQ,CAG5H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,MAAM,GAAG,QAAQ,CAG5H;AAED,wBAAgB,iEAAiE,CAAC,eAAe,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAExI;AAED,wBAAgB,iEAAiE,CAAC,eAAe,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAExI;AAED,wBAAgB,0DAA0D,CAAC,eAAe,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,OAAO,CAAC,CAyChI;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,MAAM,GAAG,QAAQ,CAG5H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,MAAM,GAAG,QAAQ,CAG5H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,MAAM,GAAG,QAAQ,CAG5H;AAED,wBAAgB,iEAAiE,CAAC,eAAe,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAExI;AAED,wBAAgB,iEAAiE,CAAC,eAAe,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAExI;AAED,wBAAgB,0DAA0D,CAAC,eAAe,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,OAAO,CAAC,CAyChI;AAED,wBAAgB,6DAA6D,CAAC,KAAK,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,GAAG,QAAQ,CAGlI;AAED,wBAAgB,6DAA6D,CAAC,KAAK,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,GAAG,QAAQ,CAGlI;AAED,wBAAgB,6DAA6D,CAAC,KAAK,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,GAAG,QAAQ,CAGlI;AAED,wBAAgB,oEAAoE,CAAC,kBAAkB,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAE9I;AAED,wBAAgB,oEAAoE,CAAC,kBAAkB,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAE9I;AAED,wBAAgB,6DAA6D,CAAC,kBAAkB,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,OAAO,CAAC,CAyCtI;AAED,wBAAgB,wDAAwD,CAAC,KAAK,EAAE,OAAO,EAAE,aAAa,EAAE,MAAM,GAAG,QAAQ,CAGxH;AAED,wBAAgB,wDAAwD,CAAC,KAAK,EAAE,OAAO,EAAE,aAAa,EAAE,MAAM,GAAG,QAAQ,CAGxH;AAED,wBAAgB,wDAAwD,CAAC,KAAK,EAAE,OAAO,EAAE,aAAa,EAAE,MAAM,GAAG,QAAQ,CAGxH;AAED,wBAAgB,+DAA+D,CAAC,aAAa,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAEpI;AAED,wBAAgB,+DAA+D,CAAC,aAAa,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAEpI;AAED,wBAAgB,wDAAwD,CAAC,aAAa,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,OAAO,CAAC,CAyC5H"}
+{"version":3,"file":"Datamap.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/Datamap.ts"],"names":[],"mappings":"AAIA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAEtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAEzC,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAC;AAG7C,wBAAgB,2BAA2B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA8D3E;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,MAAM,GAAG,QAAQ,CAG5H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,MAAM,GAAG,QAAQ,CAG5H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,MAAM,GAAG,QAAQ,CAG5H;AAED,wBAAgB,iEAAiE,CAAC,eAAe,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAExI;AAED,wBAAgB,iEAAiE,CAAC,eAAe,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAExI;AAED,wBAAgB,0DAA0D,CAAC,eAAe,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,OAAO,CAAC,CAyChI;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,MAAM,GAAG,QAAQ,CAG5H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,MAAM,GAAG,QAAQ,CAG5H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,OAAO,EAAE,eAAe,EAAE,MAAM,GAAG,QAAQ,CAG5H;AAED,wBAAgB,iEAAiE,CAAC,eAAe,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAExI;AAED,wBAAgB,iEAAiE,CAAC,eAAe,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAExI;AAED,wBAAgB,0DAA0D,CAAC,eAAe,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,OAAO,CAAC,CAyChI;AAED,wBAAgB,6DAA6D,CAAC,KAAK,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,GAAG,QAAQ,CAGlI;AAED,wBAAgB,6DAA6D,CAAC,KAAK,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,GAAG,QAAQ,CAGlI;AAED,wBAAgB,6DAA6D,CAAC,KAAK,EAAE,OAAO,EAAE,kBAAkB,EAAE,MAAM,GAAG,QAAQ,CAGlI;AAED,wBAAgB,oEAAoE,CAAC,kBAAkB,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAE9I;AAED,wBAAgB,oEAAoE,CAAC,kBAAkB,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAE9I;AAED,wBAAgB,6DAA6D,CAAC,kBAAkB,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,OAAO,CAAC,CAyCtI;AAED,wBAAgB,wDAAwD,CAAC,KAAK,EAAE,OAAO,EAAE,aAAa,EAAE,MAAM,GAAG,QAAQ,CAGxH;AAED,wBAAgB,wDAAwD,CAAC,KAAK,EAAE,OAAO,EAAE,aAAa,EAAE,MAAM,GAAG,QAAQ,CAGxH;AAED,wBAAgB,wDAAwD,CAAC,KAAK,EAAE,OAAO,EAAE,aAAa,EAAE,MAAM,GAAG,QAAQ,CAGxH;AAED,wBAAgB,+DAA+D,CAAC,aAAa,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAEpI;AAED,wBAAgB,+DAA+D,CAAC,aAAa,EAAE,MAAM,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,QAAQ,CAAC,CAEpI;AAED,wBAAgB,wDAAwD,CAAC,aAAa,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,OAAO,CAAC,CAyC5H"}

package/dist/ts/ts/Contract/Datamap.js

@@ -5,7 +5,6 @@ import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js'
 import { Assay_datamapFileNameFromIdentifier, Study_datamapFileNameFromIdentifier, Workflow_datamapFileNameFromIdentifier, Run_datamapFileNameFromIdentifier } from '../Core/Helper/Identifier.js';
 import { Contract } from './Contract.js';
 import { toFsWorkbook, fromFsWorkbook } from '../Spreadsheet/DataMap.js';
-import { DataMap__set_StaticHash_Z524259A4 } from '../Core/DataMap.js';
 
 function $007CDatamapPath$007C_$007C(input) {
   let matchResult;
@@ -14,19 +13,31 @@ function $007CDatamapPath$007C_$007C(input) {
       if (item(2, input) === "isa.datamap.xlsx") {
         matchResult = 0;
       } else {
-        matchResult = 2;
+        matchResult = 4;
       }
     } else if (item(0, input) === "studies") {
       if (item(2, input) === "isa.datamap.xlsx") {
         matchResult = 1;
       } else {
+        matchResult = 4;
+      }
+    } else if (item(0, input) === "workflows") {
+      if (item(2, input) === "isa.datamap.xlsx") {
         matchResult = 2;
+      } else {
+        matchResult = 4;
+      }
+    } else if (item(0, input) === "runs") {
+      if (item(2, input) === "isa.datamap.xlsx") {
+        matchResult = 3;
+      } else {
+        matchResult = 4;
       }
     } else {
-      matchResult = 2;
+      matchResult = 4;
     }
   } else {
-    matchResult = 2;
+    matchResult = 4;
   }
   switch (matchResult) {
     case 0: {
@@ -37,6 +48,14 @@ function $007CDatamapPath$007C_$007C(input) {
       const anyStudyName = item(1, input);
       return combineMany(input);
     }
+    case 2: {
+      const anyWorkflowName = item(1, input);
+      return combineMany(input);
+    }
+    case 3: {
+      const anyRunName = item(1, input);
+      return combineMany(input);
+    }
     default:
       return void 0;
   }
@@ -89,7 +108,7 @@ function ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static(assayIdentif
   switch (matchResult) {
     case 0: {
       const dm = fromFsWorkbook(fsworkbook_1);
-      DataMap__set_StaticHash_Z524259A4(dm, safeHash(dm));
+      dm.StaticHash = safeHash(dm) | 0;
       return dm;
     }
     default:
@@ -144,7 +163,7 @@ function ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static(studyIdentif
   switch (matchResult) {
     case 0: {
       const dm = fromFsWorkbook(fsworkbook_1);
-      DataMap__set_StaticHash_Z524259A4(dm, safeHash(dm));
+      dm.StaticHash = safeHash(dm) | 0;
       return dm;
     }
     default:
@@ -199,7 +218,7 @@ function ARCtrl_DataMap__DataMap_tryFromReadContractForWorkflow_Static(workflowI
   switch (matchResult) {
     case 0: {
       const dm = fromFsWorkbook(fsworkbook_1);
-      DataMap__set_StaticHash_Z524259A4(dm, safeHash(dm));
+      dm.StaticHash = safeHash(dm) | 0;
       return dm;
     }
     default:
@@ -254,7 +273,7 @@ function ARCtrl_DataMap__DataMap_tryFromReadContractForRun_Static(runIdentifier,
   switch (matchResult) {
     case 0: {
       const dm = fromFsWorkbook(fsworkbook_1);
-      DataMap__set_StaticHash_Z524259A4(dm, safeHash(dm));
+      dm.StaticHash = safeHash(dm) | 0;
       return dm;
     }
     default:

package/dist/ts/ts/Conversion.d.ts.map

@@ -1 +1 @@
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package/dist/ts/ts/Conversion.js

@@ -37,7 +37,7 @@ import { List_groupBy, List_distinct } from '../node_modules/@fable-org/fable-li
 import { createMissingIdentifier } from './Core/Helper/Identifier.js';
 import { rangeDouble } from '../node_modules/@fable-org/fable-library-js/Range.js';
 import { ArcTables } from './Core/Table/ArcTables.js';
-import { DataMap__get_DataContexts, DataMap_$ctor_4E3220A7, DataMap_init } from './Core/DataMap.js';
+import { DataMap } from './Core/DataMap.js';
 import { LDOrganization } from './ROCrate/Generic/Organization.js';
 import { decoder, encoder } from './Json/ROCrate/LDNode.js';
 import { Person } from './Core/Person.js';
@@ -1151,10 +1151,10 @@ function DatamapConversion_$reflection() {
   return class_type("ARCtrl.Conversion.DatamapConversion", void 0, DatamapConversion);
 }
 function DatamapConversion_composeFragmentDescriptors_Z8923FA3(datamap) {
-  return ResizeArray_map(BaseTypes_composeFragmentDescriptor_Z4C0BEF62, DataMap__get_DataContexts(datamap));
+  return ResizeArray_map(BaseTypes_composeFragmentDescriptor_Z4C0BEF62, datamap.DataContexts);
 }
 function DatamapConversion_decomposeFragmentDescriptors_Z6E59645F(fragmentDescriptors, graph, context) {
-  return DataMap_$ctor_4E3220A7(ResizeArray_map((fd) => BaseTypes_decomposeFragmentDescriptor_Z6839B9E8(fd, unwrap(graph), unwrap(context)), fragmentDescriptors));
+  return new DataMap(ResizeArray_map((fd) => BaseTypes_decomposeFragmentDescriptor_Z6839B9E8(fd, unwrap(graph), unwrap(context)), fragmentDescriptors));
 }
 class PersonConversion {
   constructor() {
@@ -1379,7 +1379,7 @@ function AssayConversion_decomposeAssay_Z6839B9E8(assay, graph, context) {
   const perfomers = ResizeArray_map((c) => PersonConversion_decomposePerson_Z6839B9E8(c, unwrap(graph), unwrap(context)), LDDataset.getCreators(assay, unwrap(graph), unwrap(context)));
   let dataMap;
   const v_1 = DatamapConversion_decomposeFragmentDescriptors_Z6E59645F(LDDataset.getVariableMeasuredAsFragmentDescriptors(assay, unwrap(graph), unwrap(context)), unwrap(graph), unwrap(context));
-  dataMap = Option_fromValueWithDefault(DataMap_init(), v_1);
+  dataMap = Option_fromValueWithDefault(DataMap.init(), v_1);
   const tables = ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586(ofSeq(LDDataset.getAboutsAsLabProcess(assay, unwrap(graph), unwrap(context))), unwrap(graph), unwrap(context));
   const comments = ResizeArray_map((c_1) => BaseTypes_decomposeComment_Z2F770004(c_1, unwrap(context)), LDDataset.getComments(assay, unwrap(graph), unwrap(context)));
   return ArcAssay.create(LDDataset.getIdentifierAsString(assay, unwrap(context)), unwrap(LDDataset.tryGetNameAsString(assay, unwrap(context))), unwrap(LDDataset.tryGetDescriptionAsString(assay, unwrap(context))), unwrap(variableMeasured), unwrap(measurementMethod), unwrap(measurementTechnique), tables.Tables, unwrap(dataMap), perfomers, comments);
@@ -1411,7 +1411,7 @@ function StudyConversion_decomposeStudy_Z6839B9E8(study, graph, context) {
   const creators = ResizeArray_map((c) => PersonConversion_decomposePerson_Z6839B9E8(c, unwrap(graph), unwrap(context)), LDDataset.getCreators(study, unwrap(graph), unwrap(context)));
   let dataMap;
   const v = DatamapConversion_decomposeFragmentDescriptors_Z6E59645F(LDDataset.getVariableMeasuredAsFragmentDescriptors(study, unwrap(graph), unwrap(context)), unwrap(graph), unwrap(context));
-  dataMap = Option_fromValueWithDefault(DataMap_init(), v);
+  dataMap = Option_fromValueWithDefault(DataMap.init(), v);
   const tables = ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586(ofSeq(LDDataset.getAboutsAsLabProcess(study, unwrap(graph), unwrap(context))), unwrap(graph), unwrap(context));
   const comments = ResizeArray_map((c_1) => BaseTypes_decomposeComment_Z2F770004(c_1, unwrap(context)), LDDataset.getComments(study, unwrap(graph), unwrap(context)));
   return ArcStudy.create(LDDataset.getIdentifierAsString(study, unwrap(context)), unwrap(LDDataset.tryGetNameAsString(study, unwrap(context))), unwrap(LDDataset.tryGetDescriptionAsString(study, unwrap(context))), unwrap(dateCreated), unwrap(datePublished), publications, creators, void 0, tables.Tables, unwrap(dataMap), void 0, comments);

package/dist/ts/ts/Core/ArcTypes.d.ts

@@ -225,9 +225,62 @@ export declare class ArcWorkflow {
     "comments@1166": Comment$[];
     staticHash: int32;
     constructor(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: ProtocolParameter[], components?: Component[], datamap?: DataMap, contacts?: Person[], comments?: Comment$[]);
+    get Identifier(): string;
+    set Identifier(i: string);
+    get Investigation(): ArcInvestigation | undefined;
+    set Investigation(a: Option<ArcInvestigation>);
+    get Title(): string | undefined;
+    set Title(t: Option<string>);
+    get Description(): string | undefined;
+    set Description(d: Option<string>);
+    get SubWorkflowIdentifiers(): string[];
+    set SubWorkflowIdentifiers(s: string[]);
+    get WorkflowType(): OntologyAnnotation | undefined;
+    set WorkflowType(w: Option<OntologyAnnotation>);
+    get URI(): string | undefined;
+    set URI(u: Option<string>);
+    get Version(): string | undefined;
+    set Version(v: Option<string>);
+    get Parameters(): ProtocolParameter[];
+    set Parameters(p: ProtocolParameter[]);
+    get Components(): Component[];
+    set Components(c: Component[]);
+    get DataMap(): DataMap | undefined;
+    set DataMap(dm: Option<DataMap>);
+    get Contacts(): Person[];
+    set Contacts(c: Person[]);
+    get Comments(): Comment$[];
+    set Comments(c: Comment$[]);
+    get StaticHash(): int32;
+    set StaticHash(s: int32);
+    static init(identifier: string): ArcWorkflow;
+    static create(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: ProtocolParameter[], components?: Component[], datamap?: DataMap, contacts?: Person[], comments?: Comment$[]): ArcWorkflow;
+    static make(identifier: string, title: Option<string>, description: Option<string>, workflowType: Option<OntologyAnnotation>, uri: Option<string>, version: Option<string>, subWorkflowIdentifiers: string[], parameters: ProtocolParameter[], components: Component[], datamap: Option<DataMap>, contacts: Person[], comments: Comment$[]): ArcWorkflow;
+    static get FileName(): string;
+    get SubWorkflowIdentifiersCount(): int32;
+    get SubWorkflowCount(): int32;
+    get SubWorkflows(): ArcWorkflow[];
+    get VacantSubWorkflowIdentifiers(): string[];
+    AddSubWorkflow(subWorkflow: ArcWorkflow): void;
+    static addSubWorkflow(subWorkflow: ArcWorkflow): ((arg0: ArcWorkflow) => ArcWorkflow);
+    InitSubWorkflow(subWorkflowIdentifier: string): ArcWorkflow;
+    static initSubWorkflow(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => [ArcWorkflow, ArcWorkflow]);
+    RegisterSubWorkflow(subWorkflowIdentifier: string): void;
+    static registerSubWorkflow(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => ArcWorkflow);
+    DeregisterSubWorkflow(subWorkflowIdentifier: string): void;
+    static deregisterSubWorkflow(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => ArcWorkflow);
+    GetRegisteredSubWorkflow(subWorkflowIdentifier: string): ArcWorkflow;
+    static getRegisteredSubWorkflow(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => ArcWorkflow);
+    static getRegisteredSubWorkflows(): ((arg0: ArcWorkflow) => ArcWorkflow[]);
+    GetRegisteredSubWorkflowsOrIdentifier(): ArcWorkflow[];
+    static getRegisteredSubWorkflowsOrIdentifier(): ((arg0: ArcWorkflow) => ArcWorkflow[]);
+    Copy(copyInvestigationRef?: boolean): ArcWorkflow;
+    StructurallyEquals(other: ArcWorkflow): boolean;
+    ReferenceEquals(other: ArcStudy): boolean;
     toString(): string;
     Equals(other: any): boolean;
     GetHashCode(): int32;
+    GetLightHashCode(): int32;
 }
 export declare function ArcWorkflow_$reflection(): TypeInfo;
 export declare function ArcWorkflow_$ctor_Z3BB02240(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: ProtocolParameter[], components?: Component[], datamap?: DataMap, contacts?: Person[], comments?: Comment$[]): ArcWorkflow;
@@ -395,6 +448,10 @@ export declare class ArcInvestigation {
     static removeAssay(assayIdentifier: string): ((arg0: ArcInvestigation) => ArcInvestigation);
     RenameAssay(oldIdentifier: string, newIdentifier: string): void;
     static renameAssay(oldIdentifier: string, newIdentifier: string): ((arg0: ArcInvestigation) => ArcInvestigation);
+    RenameRun(oldIdentifier: string, newIdentifier: string): void;
+    static renameRun(oldIdentifier: string, newIdentifier: string): ((arg0: ArcInvestigation) => ArcInvestigation);
+    RenameWorkflow(oldIdentifier: string, newIdentifier: string): void;
+    static renameWorkflow(oldIdentifier: string, newIdentifier: string): ((arg0: ArcInvestigation) => ArcInvestigation);
     SetAssayAt(index: int32, assay: ArcAssay): void;
     static setAssayAt(index: int32, assay: ArcAssay): ((arg0: ArcInvestigation) => ArcInvestigation);
     SetAssay(assayIdentifier: string, assay: ArcAssay): void;
@@ -525,96 +582,4 @@ export declare function ArcTypesAux_ErrorMsgs_unableToFindAssayIdentifier<$a, $b
 export declare function ArcTypesAux_ErrorMsgs_unableToFindStudyIdentifier<$a, $b>(studyIdentifer: $a, investigationIdentifier: $b): string;
 export declare function ArcTypesAux_ErrorMsgs_unableToFindWorkflowIdentifier<$a, $b>(workflowIdentifier: $a, investigationIdentifier: $b): string;
 export declare function ArcTypesAux_ErrorMsgs_unableToFindRunIdentifier<$a, $b>(runIdentifier: $a, investigationIdentifier: $b): string;
-/**
- * Must be unique in one study
- */
-export declare function ArcWorkflow__get_Identifier(this$: ArcWorkflow): string;
-/**
- * Must be unique in one study
- */
-export declare function ArcWorkflow__set_Identifier_Z721C83C5(this$: ArcWorkflow, i: string): void;
-export declare function ArcWorkflow__get_Investigation(this$: ArcWorkflow): Option<ArcInvestigation>;
-export declare function ArcWorkflow__set_Investigation_Z1E102E3E(this$: ArcWorkflow, a: Option<ArcInvestigation>): void;
-export declare function ArcWorkflow__get_Title(this$: ArcWorkflow): Option<string>;
-export declare function ArcWorkflow__set_Title_6DFDD678(this$: ArcWorkflow, t: Option<string>): void;
-export declare function ArcWorkflow__get_Description(this$: ArcWorkflow): Option<string>;
-export declare function ArcWorkflow__set_Description_6DFDD678(this$: ArcWorkflow, d: Option<string>): void;
-export declare function ArcWorkflow__get_SubWorkflowIdentifiers(this$: ArcWorkflow): string[];
-export declare function ArcWorkflow__set_SubWorkflowIdentifiers_70A00D82(this$: ArcWorkflow, s: string[]): void;
-export declare function ArcWorkflow__get_WorkflowType(this$: ArcWorkflow): Option<OntologyAnnotation>;
-export declare function ArcWorkflow__set_WorkflowType_279AAFF2(this$: ArcWorkflow, w: Option<OntologyAnnotation>): void;
-export declare function ArcWorkflow__get_URI(this$: ArcWorkflow): Option<string>;
-export declare function ArcWorkflow__set_URI_6DFDD678(this$: ArcWorkflow, u: Option<string>): void;
-export declare function ArcWorkflow__get_Version(this$: ArcWorkflow): Option<string>;
-export declare function ArcWorkflow__set_Version_6DFDD678(this$: ArcWorkflow, v: Option<string>): void;
-export declare function ArcWorkflow__get_Parameters(this$: ArcWorkflow): ProtocolParameter[];
-export declare function ArcWorkflow__set_Parameters_10749ED2(this$: ArcWorkflow, p: ProtocolParameter[]): void;
-export declare function ArcWorkflow__get_Components(this$: ArcWorkflow): Component[];
-export declare function ArcWorkflow__set_Components_Z3A507DDE(this$: ArcWorkflow, c: Component[]): void;
-export declare function ArcWorkflow__get_DataMap(this$: ArcWorkflow): Option<DataMap>;
-export declare function ArcWorkflow__set_DataMap_51F1E59E(this$: ArcWorkflow, dm: Option<DataMap>): void;
-export declare function ArcWorkflow__get_Contacts(this$: ArcWorkflow): Person[];
-export declare function ArcWorkflow__set_Contacts_Z7E0D1CA3(this$: ArcWorkflow, c: Person[]): void;
-export declare function ArcWorkflow__get_Comments(this$: ArcWorkflow): Comment$[];
-export declare function ArcWorkflow__set_Comments_149C14BB(this$: ArcWorkflow, c: Comment$[]): void;
-export declare function ArcWorkflow__get_StaticHash(this$: ArcWorkflow): int32;
-export declare function ArcWorkflow__set_StaticHash_Z524259A4(this$: ArcWorkflow, s: int32): void;
-export declare function ArcWorkflow_init_Z721C83C5(identifier: string): ArcWorkflow;
-export declare function ArcWorkflow_create_Z3BB02240(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: ProtocolParameter[], components?: Component[], datamap?: DataMap, contacts?: Person[], comments?: Comment$[]): ArcWorkflow;
-export declare function ArcWorkflow_make(identifier: string, title: Option<string>, description: Option<string>, workflowType: Option<OntologyAnnotation>, uri: Option<string>, version: Option<string>, subWorkflowIdentifiers: string[], parameters: ProtocolParameter[], components: Component[], datamap: Option<DataMap>, contacts: Person[], comments: Comment$[]): ArcWorkflow;
-export declare function ArcWorkflow_get_FileName(): string;
-/**
- * Returns the count of registered subWorkflow *identifiers*. This is not necessarily the same as the count of registered subWorkflows, as not all identifiers correspond to an existing subWorkflow.
- */
-export declare function ArcWorkflow__get_SubWorkflowIdentifiersCount(this$: ArcWorkflow): int32;
-/**
- * Returns the count of registered subWorkflows. This is not necessarily the same as the count of registered subWorkflow *identifiers*, as not all identifiers correspond to an existing subWorkflow.
- */
-export declare function ArcWorkflow__get_SubWorkflowCount(this$: ArcWorkflow): int32;
-/**
- * Returns all subWorkflows registered in this workflow, that correspond to an existing subWorkflow object in the associated investigation.
- */
-export declare function ArcWorkflow__get_SubWorkflows(this$: ArcWorkflow): ArcWorkflow[];
-/**
- * Returns all registered subWorkflow identifiers that do not correspond to an existing subWorkflow object in the associated investigation.
- */
-export declare function ArcWorkflow__get_VacantSubWorkflowIdentifiers(this$: ArcWorkflow): string[];
-/**
- * Add subWorkflow to investigation and register it to workflow.
- */
-export declare function ArcWorkflow__AddSubWorkflow_Z1C75CB0E(this$: ArcWorkflow, subWorkflow: ArcWorkflow): void;
-export declare function ArcWorkflow_addSubWorkflow_Z1C75CB0E(subWorkflow: ArcWorkflow): ((arg0: ArcWorkflow) => ArcWorkflow);
-export declare function ArcWorkflow__InitSubWorkflow_Z721C83C5(this$: ArcWorkflow, subWorkflowIdentifier: string): ArcWorkflow;
-export declare function ArcWorkflow_initSubWorkflow_Z721C83C5(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => [ArcWorkflow, ArcWorkflow]);
-export declare function ArcWorkflow__RegisterSubWorkflow_Z721C83C5(this$: ArcWorkflow, subWorkflowIdentifier: string): void;
-export declare function ArcWorkflow_registerSubWorkflow_Z721C83C5(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => ArcWorkflow);
-export declare function ArcWorkflow__DeregisterSubWorkflow_Z721C83C5(this$: ArcWorkflow, subWorkflowIdentifier: string): void;
-export declare function ArcWorkflow_deregisterSubWorkflow_Z721C83C5(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => ArcWorkflow);
-export declare function ArcWorkflow__GetRegisteredSubWorkflow_Z721C83C5(this$: ArcWorkflow, subWorkflowIdentifier: string): ArcWorkflow;
-export declare function ArcWorkflow_getRegisteredSubWorkflow_Z721C83C5(subWorkflowIdentifier: string): ((arg0: ArcWorkflow) => ArcWorkflow);
-export declare function ArcWorkflow_getRegisteredSubWorkflows(): ((arg0: ArcWorkflow) => ArcWorkflow[]);
-/**
- * Returns ArcSubWorkflows registered in workflow, or if no parent exists, initializies new ArcSubWorkflow from identifier.
- */
-export declare function ArcWorkflow__GetRegisteredSubWorkflowsOrIdentifier(this$: ArcWorkflow): ArcWorkflow[];
-/**
- * Returns ArcSubWorkflows registered in workflow, or if no parent exists, initializies new ArcSubWorkflow from identifier.
- */
-export declare function ArcWorkflow_getRegisteredSubWorkflowsOrIdentifier(): ((arg0: ArcWorkflow) => ArcWorkflow[]);
-/**
- * Copies ArcStudy object without the pointer to the parent ArcInvestigation
- *
- * This copy does only contain the identifiers of the registered ArcAssays and not the actual objects.
- *
- * In order to copy the ArcAssays as well, use the Copy() method of the ArcInvestigation.
- */
-export declare function ArcWorkflow__Copy_6FCE9E49(this$: ArcWorkflow, copyInvestigationRef: Option<boolean>): ArcWorkflow;
-export declare function ArcWorkflow__StructurallyEquals_Z1C75CB0E(this$: ArcWorkflow, other: ArcWorkflow): boolean;
-/**
- * Use this function to check if this ArcWorkflow and the input ArcWorkflow refer to the same object.
- *
- * If true, updating one will update the other due to mutability.
- */
-export declare function ArcWorkflow__ReferenceEquals_1680536E(this$: ArcWorkflow, other: ArcStudy): boolean;
-export declare function ArcWorkflow__GetLightHashCode(this$: ArcWorkflow): int32;
 //# sourceMappingURL=ArcTypes.d.ts.map