@nfdi4plants/arctrl 3.0.0-beta.7 → 3.0.0-beta.8

package/dist/ts/ts/Core/ArcTypes.js

@@ -1300,30 +1300,364 @@ class ArcWorkflow {
     this["comments@1166"] = defaultArg(comments, []);
     this.staticHash = 0;
   }
+  get Identifier() {
+    const this$ = this;
+    return this$["identifier@1151"];
+  }
+  set Identifier(i) {
+    const this$ = this;
+    this$["identifier@1151"] = i;
+  }
+  get Investigation() {
+    const this$ = this;
+    return unwrap(this$.investigation);
+  }
+  set Investigation(a) {
+    const this$ = this;
+    this$.investigation = a;
+  }
+  get Title() {
+    const this$ = this;
+    return unwrap(this$["title@1156"]);
+  }
+  set Title(t) {
+    const this$ = this;
+    this$["title@1156"] = t;
+  }
+  get Description() {
+    const this$ = this;
+    return unwrap(this$["description@1157"]);
+  }
+  set Description(d) {
+    const this$ = this;
+    this$["description@1157"] = d;
+  }
+  get SubWorkflowIdentifiers() {
+    const this$ = this;
+    return this$["subWorkflowIdentifiers@1158"];
+  }
+  set SubWorkflowIdentifiers(s) {
+    const this$ = this;
+    this$["subWorkflowIdentifiers@1158"] = s;
+  }
+  get WorkflowType() {
+    const this$ = this;
+    return unwrap(this$["workflowType@1159"]);
+  }
+  set WorkflowType(w) {
+    const this$ = this;
+    this$["workflowType@1159"] = w;
+  }
+  get URI() {
+    const this$ = this;
+    return unwrap(this$["uri@1160"]);
+  }
+  set URI(u) {
+    const this$ = this;
+    this$["uri@1160"] = u;
+  }
+  get Version() {
+    const this$ = this;
+    return unwrap(this$["version@1161"]);
+  }
+  set Version(v) {
+    const this$ = this;
+    this$["version@1161"] = v;
+  }
+  get Parameters() {
+    const this$ = this;
+    return this$["parameters@1162"];
+  }
+  set Parameters(p) {
+    const this$ = this;
+    this$["parameters@1162"] = p;
+  }
+  get Components() {
+    const this$ = this;
+    return this$["components@1163"];
+  }
+  set Components(c) {
+    const this$ = this;
+    this$["components@1163"] = c;
+  }
+  get DataMap() {
+    const this$ = this;
+    return unwrap(this$.dataMap);
+  }
+  set DataMap(dm) {
+    const this$ = this;
+    this$.dataMap = dm;
+  }
+  get Contacts() {
+    const this$ = this;
+    return this$["contacts@1165"];
+  }
+  set Contacts(c) {
+    const this$ = this;
+    this$["contacts@1165"] = c;
+  }
+  get Comments() {
+    const this$ = this;
+    return this$["comments@1166"];
+  }
+  set Comments(c) {
+    const this$ = this;
+    this$["comments@1166"] = c;
+  }
+  get StaticHash() {
+    const this$ = this;
+    return this$.staticHash | 0;
+  }
+  set StaticHash(s) {
+    const this$ = this;
+    this$.staticHash = s | 0;
+  }
+  static init(identifier) {
+    return new ArcWorkflow(identifier);
+  }
+  static create(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, comments) {
+    return new ArcWorkflow(identifier, unwrap(title), unwrap(description), unwrap(workflowType), unwrap(uri), unwrap(version), unwrap(subWorkflowIdentifiers), unwrap(parameters), unwrap(components), unwrap(datamap), unwrap(contacts), unwrap(comments));
+  }
+  static make(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, comments) {
+    return new ArcWorkflow(identifier, unwrap(title), unwrap(description), unwrap(workflowType), unwrap(uri), unwrap(version), subWorkflowIdentifiers, parameters, components, unwrap(datamap), contacts, comments);
+  }
+  static get FileName() {
+    return "isa.run.xlsx";
+  }
+  get SubWorkflowIdentifiersCount() {
+    const this$ = this;
+    return this$.SubWorkflowIdentifiers.length | 0;
+  }
+  get SubWorkflowCount() {
+    const this$ = this;
+    return this$.SubWorkflows.length | 0;
+  }
+  get SubWorkflows() {
+    const this$ = this;
+    let inv;
+    const investigation = this$.Investigation;
+    if (investigation != null) {
+      inv = value(investigation);
+    } else {
+      throw new Error("Cannot execute this function. Object is not part of ArcInvestigation.");
+    }
+    const collection = choose((workflowIdentifier) => inv.TryGetWorkflow(workflowIdentifier), this$.SubWorkflowIdentifiers);
+    return Array.from(collection);
+  }
+  get VacantSubWorkflowIdentifiers() {
+    const this$ = this;
+    let inv;
+    const investigation = this$.Investigation;
+    if (investigation != null) {
+      inv = value(investigation);
+    } else {
+      throw new Error("Cannot execute this function. Object is not part of ArcInvestigation.");
+    }
+    const collection = filter((arg) => !inv.ContainsWorkflow(arg), this$.SubWorkflowIdentifiers);
+    return Array.from(collection);
+  }
+  AddSubWorkflow(subWorkflow) {
+    const this$ = this;
+    let inv;
+    const investigation = this$.Investigation;
+    if (investigation != null) {
+      inv = value(investigation);
+    } else {
+      throw new Error("Cannot execute this function. Object is not part of ArcInvestigation.");
+    }
+    inv.AddWorkflow(subWorkflow);
+  }
+  static addSubWorkflow(subWorkflow) {
+    return (workflow) => {
+      const newWorkflow = workflow.Copy();
+      newWorkflow.AddSubWorkflow(subWorkflow);
+      return newWorkflow;
+    };
+  }
+  InitSubWorkflow(subWorkflowIdentifier) {
+    const this$ = this;
+    const subWorkflow = new ArcWorkflow(subWorkflowIdentifier);
+    this$.AddSubWorkflow(subWorkflow);
+    return subWorkflow;
+  }
+  static initSubWorkflow(subWorkflowIdentifier) {
+    return (workflow) => {
+      const copy = workflow.Copy();
+      return [copy, copy.InitSubWorkflow(subWorkflowIdentifier)];
+    };
+  }
+  RegisterSubWorkflow(subWorkflowIdentifier) {
+    const this$ = this;
+    if (contains(subWorkflowIdentifier, this$.SubWorkflowIdentifiers, {
+      Equals: (x, y) => x === y,
+      GetHashCode: stringHash
+    })) {
+      throw new Error(`SubWorkflow \`${subWorkflowIdentifier}\` is already registered on the workflow.`);
+    }
+    void this$.SubWorkflowIdentifiers.push(subWorkflowIdentifier);
+  }
+  static registerSubWorkflow(subWorkflowIdentifier) {
+    return (workflow) => {
+      const copy = workflow.Copy();
+      copy.RegisterSubWorkflow(subWorkflowIdentifier);
+      return copy;
+    };
+  }
+  DeregisterSubWorkflow(subWorkflowIdentifier) {
+    const this$ = this;
+    removeInPlace(subWorkflowIdentifier, this$.SubWorkflowIdentifiers, {
+      Equals: (x, y) => x === y,
+      GetHashCode: stringHash
+    });
+  }
+  static deregisterSubWorkflow(subWorkflowIdentifier) {
+    return (workflow) => {
+      const copy = workflow.Copy();
+      copy.DeregisterSubWorkflow(subWorkflowIdentifier);
+      return copy;
+    };
+  }
+  GetRegisteredSubWorkflow(subWorkflowIdentifier) {
+    const this$ = this;
+    if (!contains(subWorkflowIdentifier, this$.SubWorkflowIdentifiers, {
+      Equals: (x, y) => x === y,
+      GetHashCode: stringHash
+    })) {
+      throw new Error(`SubWorkflow \`${subWorkflowIdentifier}\` is not registered on the workflow.`);
+    }
+    let inv;
+    const investigation = this$.Investigation;
+    if (investigation != null) {
+      inv = value(investigation);
+    } else {
+      throw new Error("Cannot execute this function. Object is not part of ArcInvestigation.");
+    }
+    return inv.GetWorkflow(subWorkflowIdentifier);
+  }
+  static getRegisteredSubWorkflow(subWorkflowIdentifier) {
+    return (workflow) => {
+      const copy = workflow.Copy();
+      return copy.GetRegisteredSubWorkflow(subWorkflowIdentifier);
+    };
+  }
+  static getRegisteredSubWorkflows() {
+    return (workflow) => {
+      const copy = workflow.Copy();
+      return copy.SubWorkflows;
+    };
+  }
+  GetRegisteredSubWorkflowsOrIdentifier() {
+    const this$ = this;
+    const matchValue = this$.Investigation;
+    if (matchValue == null) {
+      return ResizeArray_map((identifier_1) => ArcWorkflow.init(identifier_1), this$.SubWorkflowIdentifiers);
+    } else {
+      const i = value(matchValue);
+      return ResizeArray_map((identifier) => {
+        const matchValue_1 = i.TryGetWorkflow(identifier);
+        if (matchValue_1 == null) {
+          return ArcWorkflow.init(identifier);
+        } else {
+          return value(matchValue_1);
+        }
+      }, this$.SubWorkflowIdentifiers);
+    }
+  }
+  static getRegisteredSubWorkflowsOrIdentifier() {
+    return (workflow) => {
+      const copy = workflow.Copy();
+      return copy.GetRegisteredSubWorkflowsOrIdentifier();
+    };
+  }
+  Copy(copyInvestigationRef) {
+    const this$ = this;
+    const copyInvestigationRef_1 = defaultArg(copyInvestigationRef, false);
+    const nextWorkFlowType = map((w) => w.Copy(), this$.WorkflowType);
+    const nextSubWorkflowIdentifiers = Array.from(this$.SubWorkflowIdentifiers);
+    const nextParameters = ResizeArray_map((x) => x, this$.Parameters);
+    const nextComponents = ResizeArray_map((x_1) => x_1, this$.Components);
+    const nextDataMap = map(DataMap__Copy, this$.DataMap);
+    const nextContacts = ResizeArray_map((c) => c.Copy(), this$.Contacts);
+    const nextComments = ResizeArray_map((c_1) => c_1.Copy(), this$.Comments);
+    let workflow;
+    const identifier = this$.Identifier;
+    const title = this$.Title;
+    const description = this$.Description;
+    const uri = this$.URI;
+    const version = this$.Version;
+    workflow = ArcWorkflow.make(identifier, title, description, nextWorkFlowType, uri, version, nextSubWorkflowIdentifiers, nextParameters, nextComponents, nextDataMap, nextContacts, nextComments);
+    if (copyInvestigationRef_1) {
+      workflow.Investigation = this$.Investigation;
+    }
+    return workflow;
+  }
+  StructurallyEquals(other) {
+    let a, b, a_1, b_1, a_2, b_2, a_3, b_3, a_4, b_4;
+    const this$ = this;
+    return forAll((x) => x === true, [this$.Identifier === other.Identifier, equals(this$.Title, other.Title), equals(this$.Description, other.Description), equals(this$.WorkflowType, other.WorkflowType), equals(this$.URI, other.URI), equals(this$.Version, other.Version), (a = this$.SubWorkflowIdentifiers, b = other.SubWorkflowIdentifiers, length(a) === length(b) && fold((acc, e) => {
+      if (acc) {
+        return e;
+      } else {
+        return false;
+      }
+    }, true, toList(delay(() => map$1((i_1) => item(i_1, a) === item(i_1, b), rangeDouble(0, 1, length(a) - 1)))))), (a_1 = this$.Parameters, b_1 = other.Parameters, length(a_1) === length(b_1) && fold((acc_1, e_1) => {
+      if (acc_1) {
+        return e_1;
+      } else {
+        return false;
+      }
+    }, true, toList(delay(() => map$1((i_2) => equals(item(i_2, a_1), item(i_2, b_1)), rangeDouble(0, 1, length(a_1) - 1)))))), (a_2 = this$.Components, b_2 = other.Components, length(a_2) === length(b_2) && fold((acc_2, e_2) => {
+      if (acc_2) {
+        return e_2;
+      } else {
+        return false;
+      }
+    }, true, toList(delay(() => map$1((i_3) => equals(item(i_3, a_2), item(i_3, b_2)), rangeDouble(0, 1, length(a_2) - 1)))))), equals(this$.DataMap, other.DataMap), (a_3 = this$.Contacts, b_3 = other.Contacts, length(a_3) === length(b_3) && fold((acc_3, e_3) => {
+      if (acc_3) {
+        return e_3;
+      } else {
+        return false;
+      }
+    }, true, toList(delay(() => map$1((i_4) => equals(item(i_4, a_3), item(i_4, b_3)), rangeDouble(0, 1, length(a_3) - 1)))))), (a_4 = this$.Comments, b_4 = other.Comments, length(a_4) === length(b_4) && fold((acc_4, e_4) => {
+      if (acc_4) {
+        return e_4;
+      } else {
+        return false;
+      }
+    }, true, toList(delay(() => map$1((i_5) => equals(item(i_5, a_4), item(i_5, b_4)), rangeDouble(0, 1, length(a_4) - 1))))))]);
+  }
+  ReferenceEquals(other) {
+    const this$ = this;
+    return this$ === other;
+  }
   toString() {
     const this$ = this;
-    const arg = ArcWorkflow__get_Identifier(this$);
-    const arg_1 = ArcWorkflow__get_Title(this$);
-    const arg_2 = ArcWorkflow__get_Description(this$);
-    const arg_3 = ArcWorkflow__get_WorkflowType(this$);
-    const arg_4 = ArcWorkflow__get_URI(this$);
-    const arg_5 = ArcWorkflow__get_Version(this$);
-    const arg_6 = ArcWorkflow__get_SubWorkflowIdentifiers(this$);
-    const arg_7 = ArcWorkflow__get_Parameters(this$);
-    const arg_8 = ArcWorkflow__get_Components(this$);
-    const arg_9 = ArcWorkflow__get_DataMap(this$);
-    const arg_10 = ArcWorkflow__get_Contacts(this$);
-    const arg_11 = ArcWorkflow__get_Comments(this$);
+    const arg = this$.Identifier;
+    const arg_1 = this$.Title;
+    const arg_2 = this$.Description;
+    const arg_3 = this$.WorkflowType;
+    const arg_4 = this$.URI;
+    const arg_5 = this$.Version;
+    const arg_6 = this$.SubWorkflowIdentifiers;
+    const arg_7 = this$.Parameters;
+    const arg_8 = this$.Components;
+    const arg_9 = this$.DataMap;
+    const arg_10 = this$.Contacts;
+    const arg_11 = this$.Comments;
     return toText(printf("ArcWorkflow {\r\n    Identifier = %A,\r\n    Title = %A,\r\n    Description = %A,\r\n    WorkflowType = %A,\r\n    URI = %A,\r\n    Version = %A,\r\n    SubWorkflowIdentifiers = %A,\r\n    Parameters = %A,\r\n    Components = %A,\r\n    DataMap = %A,\r\n    Contacts = %A,\r\n    Comments = %A}"))(arg)(arg_1)(arg_2)(arg_3)(arg_4)(arg_5)(arg_6)(arg_7)(arg_8)(arg_9)(arg_10)(arg_11);
   }
   Equals(other) {
     let s;
     const this$ = this;
-    return other instanceof ArcWorkflow && (s = other, ArcWorkflow__StructurallyEquals_Z1C75CB0E(this$, s));
+    return other instanceof ArcWorkflow && (s = other, this$.StructurallyEquals(s));
   }
   GetHashCode() {
     const this$ = this;
-    return boxHashArray([ArcWorkflow__get_Identifier(this$), boxHashOption(ArcWorkflow__get_Title(this$)), boxHashOption(ArcWorkflow__get_Description(this$)), boxHashOption(ArcWorkflow__get_WorkflowType(this$)), boxHashOption(ArcWorkflow__get_URI(this$)), boxHashOption(ArcWorkflow__get_Version(this$)), boxHashSeq(ArcWorkflow__get_SubWorkflowIdentifiers(this$)), boxHashSeq(ArcWorkflow__get_Parameters(this$)), boxHashSeq(ArcWorkflow__get_Components(this$)), boxHashOption(ArcWorkflow__get_DataMap(this$)), boxHashSeq(ArcWorkflow__get_Contacts(this$)), boxHashSeq(ArcWorkflow__get_Comments(this$))]) | 0;
+    return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.WorkflowType), boxHashOption(this$.URI), boxHashOption(this$.Version), boxHashSeq(this$.SubWorkflowIdentifiers), boxHashSeq(this$.Parameters), boxHashSeq(this$.Components), boxHashOption(this$.DataMap), boxHashSeq(this$.Contacts), boxHashSeq(this$.Comments)]) | 0;
+  }
+  GetLightHashCode() {
+    const this$ = this;
+    return boxHashArray([this$.Identifier, boxHashOption(this$.Title), boxHashOption(this$.Description), boxHashOption(this$.WorkflowType), boxHashOption(this$.URI), boxHashOption(this$.Version), boxHashSeq(this$.SubWorkflowIdentifiers), boxHashSeq(this$.Parameters), boxHashSeq(this$.Components), boxHashSeq(this$.Contacts), boxHashSeq(this$.Comments)]) | 0;
   }
 }
 function ArcWorkflow_$reflection() {
@@ -2024,7 +2358,8 @@ class ArcInvestigation {
     let enumerator_2 = getEnumerator(wss);
     try {
       while (enumerator_2["System.Collections.IEnumerator.MoveNext"]()) {
-        ArcWorkflow__set_Investigation_Z1E102E3E(enumerator_2["System.Collections.Generic.IEnumerator`1.get_Current"](), this$.contents);
+        const w = enumerator_2["System.Collections.Generic.IEnumerator`1.get_Current"]();
+        w.Investigation = this$.contents;
       }
     } finally {
       disposeSafe(enumerator_2);
@@ -2334,6 +2669,36 @@ class ArcInvestigation {
       return newInv;
     };
   }
+  RenameRun(oldIdentifier, newIdentifier) {
+    const this$ = this;
+    iterate((a) => {
+      if (a.Identifier === oldIdentifier) {
+        a.Identifier = newIdentifier;
+      }
+    }, this$.Runs);
+  }
+  static renameRun(oldIdentifier, newIdentifier) {
+    return (inv) => {
+      const newInv = inv.Copy();
+      newInv.RenameRun(oldIdentifier, newIdentifier);
+      return newInv;
+    };
+  }
+  RenameWorkflow(oldIdentifier, newIdentifier) {
+    const this$ = this;
+    iterate((a) => {
+      if (a.Identifier === oldIdentifier) {
+        a.Identifier = newIdentifier;
+      }
+    }, this$.Workflows);
+  }
+  static renameWorkflow(oldIdentifier, newIdentifier) {
+    return (inv) => {
+      const newInv = inv.Copy();
+      newInv.RenameWorkflow(oldIdentifier, newIdentifier);
+      return newInv;
+    };
+  }
   SetAssayAt(index, assay) {
     const this$ = this;
     const assayIdent = assay.Identifier;
@@ -2746,11 +3111,11 @@ class ArcInvestigation {
   }
   get WorkflowIdentifiers() {
     const this$ = this;
-    return toArray(map$1(ArcWorkflow__get_Identifier, this$.Workflows));
+    return toArray(map$1((x) => x.Identifier, this$.Workflows));
   }
   GetWorkflowIndex(workflowIdentifier) {
     const this$ = this;
-    const index = this$.Workflows.findIndex((w) => ArcWorkflow__get_Identifier(w) === workflowIdentifier) | 0;
+    const index = this$.Workflows.findIndex((w) => w.Identifier === workflowIdentifier) | 0;
     if (index === -1) {
       throw new Error(`Unable to find workflow with specified identifier '${workflowIdentifier}'!`);
     }
@@ -2762,12 +3127,12 @@ class ArcInvestigation {
   AddWorkflow(workflow) {
     const this$ = this;
     const workflow_1 = workflow;
-    const matchValue = tryFindIndex((x) => ArcWorkflow__get_Identifier(x) === ArcWorkflow__get_Identifier(workflow_1), this$.Workflows);
+    const matchValue = tryFindIndex((x) => x.Identifier === workflow_1.Identifier, this$.Workflows);
     if (matchValue == null) {
     } else {
-      throw new Error(`Cannot create workflow with name ${ArcWorkflow__get_Identifier(workflow_1)}, as workflow names must be unique and workflow at index ${value(matchValue)} has the same name.`);
+      throw new Error(`Cannot create workflow with name ${workflow_1.Identifier}, as workflow names must be unique and workflow at index ${value(matchValue)} has the same name.`);
     }
-    ArcWorkflow__set_Investigation_Z1E102E3E(workflow, this$);
+    workflow.Investigation = this$;
     void this$.Workflows.push(workflow);
   }
   static addWorkflow(workflow) {
@@ -2779,7 +3144,7 @@ class ArcInvestigation {
   }
   InitWorkflow(workflowIdentifier) {
     const this$ = this;
-    const workflow = ArcWorkflow_init_Z721C83C5(workflowIdentifier);
+    const workflow = ArcWorkflow.init(workflowIdentifier);
     this$.AddWorkflow(workflow);
     return workflow;
   }
@@ -2802,7 +3167,7 @@ class ArcInvestigation {
   }
   DeleteWorkflow(workflowIdentifier) {
     const this$ = this;
-    const index = this$.Workflows.findIndex((w) => ArcWorkflow__get_Identifier(w) === workflowIdentifier) | 0;
+    const index = this$.Workflows.findIndex((w) => w.Identifier === workflowIdentifier) | 0;
     this$.DeleteWorkflowAt(index);
   }
   static deleteWorkflow(workflowIdentifier) {
@@ -2839,7 +3204,7 @@ class ArcInvestigation {
   }
   TryGetWorkflow(workflowIdentifier) {
     const this$ = this;
-    return tryFind((w) => ArcWorkflow__get_Identifier(w) === workflowIdentifier, this$.Workflows);
+    return tryFind((w) => w.Identifier === workflowIdentifier, this$.Workflows);
   }
   static tryGetWorkflow(workflowIdentifier) {
     return (inv) => {
@@ -2849,7 +3214,7 @@ class ArcInvestigation {
   }
   ContainsWorkflow(workflowIdentifier) {
     const this$ = this;
-    return exists((w) => ArcWorkflow__get_Identifier(w) === workflowIdentifier, this$.Workflows);
+    return exists((w) => w.Identifier === workflowIdentifier, this$.Workflows);
   }
   static containsWorkflow(workflowIdentifier) {
     return (inv) => inv.ContainsWorkflow(workflowIdentifier);
@@ -2857,12 +3222,12 @@ class ArcInvestigation {
   SetWorkflowAt(index, workflow) {
     const this$ = this;
     const workflow_1 = workflow;
-    const matchValue = tryFindIndex((x) => ArcWorkflow__get_Identifier(x) === ArcWorkflow__get_Identifier(workflow_1), this$.Workflows);
+    const matchValue = tryFindIndex((x) => x.Identifier === workflow_1.Identifier, removeAt(index, this$.Workflows));
     if (matchValue == null) {
     } else {
-      throw new Error(`Cannot create workflow with name ${ArcWorkflow__get_Identifier(workflow_1)}, as workflow names must be unique and workflow at index ${value(matchValue)} has the same name.`);
+      throw new Error(`Cannot create workflow with name ${workflow_1.Identifier}, as workflow names must be unique and workflow at index ${value(matchValue)} has the same name.`);
     }
-    ArcWorkflow__set_Investigation_Z1E102E3E(workflow, this$);
+    workflow.Investigation = this$;
     this$.Workflows[index] = workflow;
   }
   SetWorkflow(workflowIdentifier, workflow) {
@@ -3001,7 +3366,7 @@ class ArcInvestigation {
   SetRunAt(index, run) {
     const this$ = this;
     const run_1 = run;
-    const matchValue = tryFindIndex((x) => x.Identifier === run_1.Identifier, this$.Runs);
+    const matchValue = tryFindIndex((x) => x.Identifier === run_1.Identifier, removeAt(index, this$.Runs));
     if (matchValue == null) {
     } else {
       throw new Error(`Cannot create run with name ${run_1.Identifier}, as run names must be unique and run at index ${value(matchValue)} has the same name.`);
@@ -3170,7 +3535,8 @@ class ArcInvestigation {
     try {
       while (enumerator_2["System.Collections.IEnumerator.MoveNext"]()) {
         const workflow = enumerator_2["System.Collections.Generic.IEnumerator`1.get_Current"]();
-        void nextWorkflows.push(ArcWorkflow__Copy_6FCE9E49(workflow));
+        const copy_2 = workflow.Copy();
+        void nextWorkflows.push(copy_2);
       }
     } finally {
       disposeSafe(enumerator_2);
@@ -3313,282 +3679,5 @@ function ArcTypesAux_ErrorMsgs_unableToFindWorkflowIdentifier(workflowIdentifier
 function ArcTypesAux_ErrorMsgs_unableToFindRunIdentifier(runIdentifier, investigationIdentifier) {
   return `Error. Unable to find run with identifier '${runIdentifier}' in investigation ${investigationIdentifier}.`;
 }
-function ArcWorkflow__get_Identifier(this$) {
-  return this$["identifier@1151"];
-}
-function ArcWorkflow__set_Identifier_Z721C83C5(this$, i) {
-  this$["identifier@1151"] = i;
-}
-function ArcWorkflow__get_Investigation(this$) {
-  return this$.investigation;
-}
-function ArcWorkflow__set_Investigation_Z1E102E3E(this$, a) {
-  this$.investigation = a;
-}
-function ArcWorkflow__get_Title(this$) {
-  return this$["title@1156"];
-}
-function ArcWorkflow__set_Title_6DFDD678(this$, t) {
-  this$["title@1156"] = t;
-}
-function ArcWorkflow__get_Description(this$) {
-  return this$["description@1157"];
-}
-function ArcWorkflow__set_Description_6DFDD678(this$, d) {
-  this$["description@1157"] = d;
-}
-function ArcWorkflow__get_SubWorkflowIdentifiers(this$) {
-  return this$["subWorkflowIdentifiers@1158"];
-}
-function ArcWorkflow__set_SubWorkflowIdentifiers_70A00D82(this$, s) {
-  this$["subWorkflowIdentifiers@1158"] = s;
-}
-function ArcWorkflow__get_WorkflowType(this$) {
-  return this$["workflowType@1159"];
-}
-function ArcWorkflow__set_WorkflowType_279AAFF2(this$, w) {
-  this$["workflowType@1159"] = w;
-}
-function ArcWorkflow__get_URI(this$) {
-  return this$["uri@1160"];
-}
-function ArcWorkflow__set_URI_6DFDD678(this$, u) {
-  this$["uri@1160"] = u;
-}
-function ArcWorkflow__get_Version(this$) {
-  return this$["version@1161"];
-}
-function ArcWorkflow__set_Version_6DFDD678(this$, v) {
-  this$["version@1161"] = v;
-}
-function ArcWorkflow__get_Parameters(this$) {
-  return this$["parameters@1162"];
-}
-function ArcWorkflow__set_Parameters_10749ED2(this$, p) {
-  this$["parameters@1162"] = p;
-}
-function ArcWorkflow__get_Components(this$) {
-  return this$["components@1163"];
-}
-function ArcWorkflow__set_Components_Z3A507DDE(this$, c) {
-  this$["components@1163"] = c;
-}
-function ArcWorkflow__get_DataMap(this$) {
-  return this$.dataMap;
-}
-function ArcWorkflow__set_DataMap_51F1E59E(this$, dm) {
-  this$.dataMap = dm;
-}
-function ArcWorkflow__get_Contacts(this$) {
-  return this$["contacts@1165"];
-}
-function ArcWorkflow__set_Contacts_Z7E0D1CA3(this$, c) {
-  this$["contacts@1165"] = c;
-}
-function ArcWorkflow__get_Comments(this$) {
-  return this$["comments@1166"];
-}
-function ArcWorkflow__set_Comments_149C14BB(this$, c) {
-  this$["comments@1166"] = c;
-}
-function ArcWorkflow__get_StaticHash(this$) {
-  return this$.staticHash;
-}
-function ArcWorkflow__set_StaticHash_Z524259A4(this$, s) {
-  this$.staticHash = s | 0;
-}
-function ArcWorkflow_init_Z721C83C5(identifier) {
-  return ArcWorkflow_$ctor_Z3BB02240(identifier);
-}
-function ArcWorkflow_create_Z3BB02240(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, comments) {
-  return ArcWorkflow_$ctor_Z3BB02240(identifier, unwrap(title), unwrap(description), unwrap(workflowType), unwrap(uri), unwrap(version), unwrap(subWorkflowIdentifiers), unwrap(parameters), unwrap(components), unwrap(datamap), unwrap(contacts), unwrap(comments));
-}
-function ArcWorkflow_make(identifier, title, description, workflowType, uri, version, subWorkflowIdentifiers, parameters, components, datamap, contacts, comments) {
-  return ArcWorkflow_$ctor_Z3BB02240(identifier, unwrap(title), unwrap(description), unwrap(workflowType), unwrap(uri), unwrap(version), subWorkflowIdentifiers, parameters, components, unwrap(datamap), contacts, comments);
-}
-function ArcWorkflow_get_FileName() {
-  return "isa.run.xlsx";
-}
-function ArcWorkflow__get_SubWorkflowIdentifiersCount(this$) {
-  return ArcWorkflow__get_SubWorkflowIdentifiers(this$).length;
-}
-function ArcWorkflow__get_SubWorkflowCount(this$) {
-  return ArcWorkflow__get_SubWorkflows(this$).length;
-}
-function ArcWorkflow__get_SubWorkflows(this$) {
-  let inv;
-  const investigation = ArcWorkflow__get_Investigation(this$);
-  if (investigation != null) {
-    inv = value(investigation);
-  } else {
-    throw new Error("Cannot execute this function. Object is not part of ArcInvestigation.");
-  }
-  const collection = choose((workflowIdentifier) => inv.TryGetWorkflow(workflowIdentifier), ArcWorkflow__get_SubWorkflowIdentifiers(this$));
-  return Array.from(collection);
-}
-function ArcWorkflow__get_VacantSubWorkflowIdentifiers(this$) {
-  let inv;
-  const investigation = ArcWorkflow__get_Investigation(this$);
-  if (investigation != null) {
-    inv = value(investigation);
-  } else {
-    throw new Error("Cannot execute this function. Object is not part of ArcInvestigation.");
-  }
-  const collection = filter((arg) => !inv.ContainsWorkflow(arg), ArcWorkflow__get_SubWorkflowIdentifiers(this$));
-  return Array.from(collection);
-}
-function ArcWorkflow__AddSubWorkflow_Z1C75CB0E(this$, subWorkflow) {
-  let inv;
-  const investigation = ArcWorkflow__get_Investigation(this$);
-  if (investigation != null) {
-    inv = value(investigation);
-  } else {
-    throw new Error("Cannot execute this function. Object is not part of ArcInvestigation.");
-  }
-  inv.AddWorkflow(subWorkflow);
-}
-function ArcWorkflow_addSubWorkflow_Z1C75CB0E(subWorkflow) {
-  return (workflow) => {
-    const newWorkflow = ArcWorkflow__Copy_6FCE9E49(workflow);
-    ArcWorkflow__AddSubWorkflow_Z1C75CB0E(newWorkflow, subWorkflow);
-    return newWorkflow;
-  };
-}
-function ArcWorkflow__InitSubWorkflow_Z721C83C5(this$, subWorkflowIdentifier) {
-  const subWorkflow = ArcWorkflow_$ctor_Z3BB02240(subWorkflowIdentifier);
-  ArcWorkflow__AddSubWorkflow_Z1C75CB0E(this$, subWorkflow);
-  return subWorkflow;
-}
-function ArcWorkflow_initSubWorkflow_Z721C83C5(subWorkflowIdentifier) {
-  return (workflow) => {
-    const copy = ArcWorkflow__Copy_6FCE9E49(workflow);
-    return [copy, ArcWorkflow__InitSubWorkflow_Z721C83C5(copy, subWorkflowIdentifier)];
-  };
-}
-function ArcWorkflow__RegisterSubWorkflow_Z721C83C5(this$, subWorkflowIdentifier) {
-  if (contains(subWorkflowIdentifier, ArcWorkflow__get_SubWorkflowIdentifiers(this$), {
-    Equals: (x, y) => x === y,
-    GetHashCode: stringHash
-  })) {
-    throw new Error(`SubWorkflow \`${subWorkflowIdentifier}\` is already registered on the workflow.`);
-  }
-  void ArcWorkflow__get_SubWorkflowIdentifiers(this$).push(subWorkflowIdentifier);
-}
-function ArcWorkflow_registerSubWorkflow_Z721C83C5(subWorkflowIdentifier) {
-  return (workflow) => {
-    const copy = ArcWorkflow__Copy_6FCE9E49(workflow);
-    ArcWorkflow__RegisterSubWorkflow_Z721C83C5(copy, subWorkflowIdentifier);
-    return copy;
-  };
-}
-function ArcWorkflow__DeregisterSubWorkflow_Z721C83C5(this$, subWorkflowIdentifier) {
-  removeInPlace(subWorkflowIdentifier, ArcWorkflow__get_SubWorkflowIdentifiers(this$), {
-    Equals: (x, y) => x === y,
-    GetHashCode: stringHash
-  });
-}
-function ArcWorkflow_deregisterSubWorkflow_Z721C83C5(subWorkflowIdentifier) {
-  return (workflow) => {
-    const copy = ArcWorkflow__Copy_6FCE9E49(workflow);
-    ArcWorkflow__DeregisterSubWorkflow_Z721C83C5(copy, subWorkflowIdentifier);
-    return copy;
-  };
-}
-function ArcWorkflow__GetRegisteredSubWorkflow_Z721C83C5(this$, subWorkflowIdentifier) {
-  if (!contains(subWorkflowIdentifier, ArcWorkflow__get_SubWorkflowIdentifiers(this$), {
-    Equals: (x, y) => x === y,
-    GetHashCode: stringHash
-  })) {
-    throw new Error(`SubWorkflow \`${subWorkflowIdentifier}\` is not registered on the workflow.`);
-  }
-  let inv;
-  const investigation = ArcWorkflow__get_Investigation(this$);
-  if (investigation != null) {
-    inv = value(investigation);
-  } else {
-    throw new Error("Cannot execute this function. Object is not part of ArcInvestigation.");
-  }
-  return inv.GetWorkflow(subWorkflowIdentifier);
-}
-function ArcWorkflow_getRegisteredSubWorkflow_Z721C83C5(subWorkflowIdentifier) {
-  return (workflow) => ArcWorkflow__GetRegisteredSubWorkflow_Z721C83C5(ArcWorkflow__Copy_6FCE9E49(workflow), subWorkflowIdentifier);
-}
-function ArcWorkflow_getRegisteredSubWorkflows() {
-  return (workflow) => ArcWorkflow__get_SubWorkflows(ArcWorkflow__Copy_6FCE9E49(workflow));
-}
-function ArcWorkflow__GetRegisteredSubWorkflowsOrIdentifier(this$) {
-  const matchValue = ArcWorkflow__get_Investigation(this$);
-  if (matchValue == null) {
-    return ResizeArray_map(ArcWorkflow_init_Z721C83C5, ArcWorkflow__get_SubWorkflowIdentifiers(this$));
-  } else {
-    const i = value(matchValue);
-    return ResizeArray_map((identifier) => {
-      const matchValue_1 = i.TryGetWorkflow(identifier);
-      if (matchValue_1 == null) {
-        return ArcWorkflow_init_Z721C83C5(identifier);
-      } else {
-        return value(matchValue_1);
-      }
-    }, ArcWorkflow__get_SubWorkflowIdentifiers(this$));
-  }
-}
-function ArcWorkflow_getRegisteredSubWorkflowsOrIdentifier() {
-  return (workflow) => ArcWorkflow__GetRegisteredSubWorkflowsOrIdentifier(ArcWorkflow__Copy_6FCE9E49(workflow));
-}
-function ArcWorkflow__Copy_6FCE9E49(this$, copyInvestigationRef) {
-  const copyInvestigationRef_1 = defaultArg(copyInvestigationRef, false);
-  const nextWorkFlowType = map((w) => w.Copy(), ArcWorkflow__get_WorkflowType(this$));
-  const nextSubWorkflowIdentifiers = Array.from(ArcWorkflow__get_SubWorkflowIdentifiers(this$));
-  const nextParameters = ResizeArray_map((x) => x, ArcWorkflow__get_Parameters(this$));
-  const nextComponents = ResizeArray_map((x_1) => x_1, ArcWorkflow__get_Components(this$));
-  const nextDataMap = map(DataMap__Copy, ArcWorkflow__get_DataMap(this$));
-  const nextContacts = ResizeArray_map((c) => c.Copy(), ArcWorkflow__get_Contacts(this$));
-  const nextComments = ResizeArray_map((c_1) => c_1.Copy(), ArcWorkflow__get_Comments(this$));
-  const workflow = ArcWorkflow_make(ArcWorkflow__get_Identifier(this$), ArcWorkflow__get_Title(this$), ArcWorkflow__get_Description(this$), nextWorkFlowType, ArcWorkflow__get_URI(this$), ArcWorkflow__get_Version(this$), nextSubWorkflowIdentifiers, nextParameters, nextComponents, nextDataMap, nextContacts, nextComments);
-  if (copyInvestigationRef_1) {
-    ArcWorkflow__set_Investigation_Z1E102E3E(workflow, ArcWorkflow__get_Investigation(this$));
-  }
-  return workflow;
-}
-function ArcWorkflow__StructurallyEquals_Z1C75CB0E(this$, other) {
-  let a, b, a_1, b_1, a_2, b_2, a_3, b_3, a_4, b_4;
-  return forAll((x) => x === true, [ArcWorkflow__get_Identifier(this$) === ArcWorkflow__get_Identifier(other), equals(ArcWorkflow__get_Title(this$), ArcWorkflow__get_Title(other)), equals(ArcWorkflow__get_Description(this$), ArcWorkflow__get_Description(other)), equals(ArcWorkflow__get_WorkflowType(this$), ArcWorkflow__get_WorkflowType(other)), equals(ArcWorkflow__get_URI(this$), ArcWorkflow__get_URI(other)), equals(ArcWorkflow__get_Version(this$), ArcWorkflow__get_Version(other)), (a = ArcWorkflow__get_SubWorkflowIdentifiers(this$), b = ArcWorkflow__get_SubWorkflowIdentifiers(other), length(a) === length(b) && fold((acc, e) => {
-    if (acc) {
-      return e;
-    } else {
-      return false;
-    }
-  }, true, toList(delay(() => map$1((i_1) => item(i_1, a) === item(i_1, b), rangeDouble(0, 1, length(a) - 1)))))), (a_1 = ArcWorkflow__get_Parameters(this$), b_1 = ArcWorkflow__get_Parameters(other), length(a_1) === length(b_1) && fold((acc_1, e_1) => {
-    if (acc_1) {
-      return e_1;
-    } else {
-      return false;
-    }
-  }, true, toList(delay(() => map$1((i_2) => equals(item(i_2, a_1), item(i_2, b_1)), rangeDouble(0, 1, length(a_1) - 1)))))), (a_2 = ArcWorkflow__get_Components(this$), b_2 = ArcWorkflow__get_Components(other), length(a_2) === length(b_2) && fold((acc_2, e_2) => {
-    if (acc_2) {
-      return e_2;
-    } else {
-      return false;
-    }
-  }, true, toList(delay(() => map$1((i_3) => equals(item(i_3, a_2), item(i_3, b_2)), rangeDouble(0, 1, length(a_2) - 1)))))), equals(ArcWorkflow__get_DataMap(this$), ArcWorkflow__get_DataMap(other)), (a_3 = ArcWorkflow__get_Contacts(this$), b_3 = ArcWorkflow__get_Contacts(other), length(a_3) === length(b_3) && fold((acc_3, e_3) => {
-    if (acc_3) {
-      return e_3;
-    } else {
-      return false;
-    }
-  }, true, toList(delay(() => map$1((i_4) => equals(item(i_4, a_3), item(i_4, b_3)), rangeDouble(0, 1, length(a_3) - 1)))))), (a_4 = ArcWorkflow__get_Comments(this$), b_4 = ArcWorkflow__get_Comments(other), length(a_4) === length(b_4) && fold((acc_4, e_4) => {
-    if (acc_4) {
-      return e_4;
-    } else {
-      return false;
-    }
-  }, true, toList(delay(() => map$1((i_5) => equals(item(i_5, a_4), item(i_5, b_4)), rangeDouble(0, 1, length(a_4) - 1))))))]);
-}
-function ArcWorkflow__ReferenceEquals_1680536E(this$, other) {
-  return this$ === other;
-}
-function ArcWorkflow__GetLightHashCode(this$) {
-  return boxHashArray([ArcWorkflow__get_Identifier(this$), boxHashOption(ArcWorkflow__get_Title(this$)), boxHashOption(ArcWorkflow__get_Description(this$)), boxHashOption(ArcWorkflow__get_WorkflowType(this$)), boxHashOption(ArcWorkflow__get_URI(this$)), boxHashOption(ArcWorkflow__get_Version(this$)), boxHashSeq(ArcWorkflow__get_SubWorkflowIdentifiers(this$)), boxHashSeq(ArcWorkflow__get_Parameters(this$)), boxHashSeq(ArcWorkflow__get_Components(this$)), boxHashSeq(ArcWorkflow__get_Contacts(this$)), boxHashSeq(ArcWorkflow__get_Comments(this$))]);
-}
 
-export { ArcAssay, ArcAssay_$ctor_11E1F34, ArcAssay_$reflection, ArcInvestigation, ArcInvestigation_$ctor_Z67823F6C, ArcInvestigation_$reflection, ArcRun, ArcRun_$ctor_Z38E7054B, ArcRun_$reflection, ArcStudy, ArcStudy_$ctor_64321D5B, ArcStudy_$reflection, ArcTypesAux_ErrorMsgs_unableToFindAssayIdentifier, ArcTypesAux_ErrorMsgs_unableToFindRunIdentifier, ArcTypesAux_ErrorMsgs_unableToFindStudyIdentifier, ArcTypesAux_ErrorMsgs_unableToFindWorkflowIdentifier, ArcWorkflow, ArcWorkflow_$ctor_Z3BB02240, ArcWorkflow_$reflection, ArcWorkflow__AddSubWorkflow_Z1C75CB0E, ArcWorkflow__Copy_6FCE9E49, ArcWorkflow__DeregisterSubWorkflow_Z721C83C5, ArcWorkflow__GetLightHashCode, ArcWorkflow__GetRegisteredSubWorkflow_Z721C83C5, ArcWorkflow__GetRegisteredSubWorkflowsOrIdentifier, ArcWorkflow__InitSubWorkflow_Z721C83C5, ArcWorkflow__ReferenceEquals_1680536E, ArcWorkflow__RegisterSubWorkflow_Z721C83C5, ArcWorkflow__StructurallyEquals_Z1C75CB0E, ArcWorkflow__get_Comments, ArcWorkflow__get_Components, ArcWorkflow__get_Contacts, ArcWorkflow__get_DataMap, ArcWorkflow__get_Description, ArcWorkflow__get_Identifier, ArcWorkflow__get_Investigation, ArcWorkflow__get_Parameters, ArcWorkflow__get_StaticHash, ArcWorkflow__get_SubWorkflowCount, ArcWorkflow__get_SubWorkflowIdentifiers, ArcWorkflow__get_SubWorkflowIdentifiersCount, ArcWorkflow__get_SubWorkflows, ArcWorkflow__get_Title, ArcWorkflow__get_URI, ArcWorkflow__get_VacantSubWorkflowIdentifiers, ArcWorkflow__get_Version, ArcWorkflow__get_WorkflowType, ArcWorkflow__set_Comments_149C14BB, ArcWorkflow__set_Components_Z3A507DDE, ArcWorkflow__set_Contacts_Z7E0D1CA3, ArcWorkflow__set_DataMap_51F1E59E, ArcWorkflow__set_Description_6DFDD678, ArcWorkflow__set_Identifier_Z721C83C5, ArcWorkflow__set_Investigation_Z1E102E3E, ArcWorkflow__set_Parameters_10749ED2, ArcWorkflow__set_StaticHash_Z524259A4, ArcWorkflow__set_SubWorkflowIdentifiers_70A00D82, ArcWorkflow__set_Title_6DFDD678, ArcWorkflow__set_URI_6DFDD678, ArcWorkflow__set_Version_6DFDD678, ArcWorkflow__set_WorkflowType_279AAFF2, ArcWorkflow_addSubWorkflow_Z1C75CB0E, ArcWorkflow_create_Z3BB02240, ArcWorkflow_deregisterSubWorkflow_Z721C83C5, ArcWorkflow_getRegisteredSubWorkflow_Z721C83C5, ArcWorkflow_getRegisteredSubWorkflows, ArcWorkflow_getRegisteredSubWorkflowsOrIdentifier, ArcWorkflow_get_FileName, ArcWorkflow_initSubWorkflow_Z721C83C5, ArcWorkflow_init_Z721C83C5, ArcWorkflow_make, ArcWorkflow_registerSubWorkflow_Z721C83C5 };
+export { ArcAssay, ArcAssay_$ctor_11E1F34, ArcAssay_$reflection, ArcInvestigation, ArcInvestigation_$ctor_Z67823F6C, ArcInvestigation_$reflection, ArcRun, ArcRun_$ctor_Z38E7054B, ArcRun_$reflection, ArcStudy, ArcStudy_$ctor_64321D5B, ArcStudy_$reflection, ArcTypesAux_ErrorMsgs_unableToFindAssayIdentifier, ArcTypesAux_ErrorMsgs_unableToFindRunIdentifier, ArcTypesAux_ErrorMsgs_unableToFindStudyIdentifier, ArcTypesAux_ErrorMsgs_unableToFindWorkflowIdentifier, ArcWorkflow, ArcWorkflow_$ctor_Z3BB02240, ArcWorkflow_$reflection };