@nfdi4plants/arctrl 3.0.0-beta.4 → 3.0.0-beta.5

package/dist/ts/ts/Core/IdentifierSetters.d.ts

@@ -1,7 +1,9 @@
 import { ArcTable } from './Table/ArcTable.js';
-import { ArcInvestigation, ArcStudy, ArcAssay } from './ArcTypes.js';
+import { ArcInvestigation, ArcRun, ArcWorkflow, ArcStudy, ArcAssay } from './ArcTypes.js';
 export declare function setArcTableName(newName: string, table: ArcTable): ArcTable;
 export declare function setAssayIdentifier(newIdentifier: string, assay: ArcAssay): ArcAssay;
 export declare function setStudyIdentifier(newIdentifier: string, study: ArcStudy): ArcStudy;
+export declare function setWorkflowIdentifier(newIdentifier: string, workflow: ArcWorkflow): ArcWorkflow;
+export declare function setRunIdentifier(newIdentifier: string, run: ArcRun): ArcRun;
 export declare function setInvestigationIdentifier(newIdentifier: string, investigation: ArcInvestigation): ArcInvestigation;
 //# sourceMappingURL=IdentifierSetters.d.ts.map

package/dist/ts/ts/Core/IdentifierSetters.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"IdentifierSetters.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Core/IdentifierSetters.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAE,gBAAgB,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAErE,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAI1E;AAED,wBAAgB,kBAAkB,CAAC,aAAa,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAInF;AAED,wBAAgB,kBAAkB,CAAC,aAAa,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAInF;AAED,wBAAgB,0BAA0B,CAAC,aAAa,EAAE,MAAM,EAAE,aAAa,EAAE,gBAAgB,GAAG,gBAAgB,CAInH"}
+{"version":3,"file":"IdentifierSetters.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Core/IdentifierSetters.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAE,gBAAgB,EAAE,MAAM,EAAE,WAAW,EAAyC,QAAQ,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAEjI,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAI1E;AAED,wBAAgB,kBAAkB,CAAC,aAAa,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAInF;AAED,wBAAgB,kBAAkB,CAAC,aAAa,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAInF;AAED,wBAAgB,qBAAqB,CAAC,aAAa,EAAE,MAAM,EAAE,QAAQ,EAAE,WAAW,GAAG,WAAW,CAI/F;AAED,wBAAgB,gBAAgB,CAAC,aAAa,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,CAI3E;AAED,wBAAgB,0BAA0B,CAAC,aAAa,EAAE,MAAM,EAAE,aAAa,EAAE,gBAAgB,GAAG,gBAAgB,CAInH"}

package/dist/ts/ts/Core/IdentifierSetters.js

@@ -1,4 +1,6 @@
 import { checkValidCharacters } from './Helper/Identifier.js';
+import './DataMap.js';
+import './Helper/Url.js';
 
 function setInvestigationIdentifier(newIdentifier, investigation) {
   checkValidCharacters(newIdentifier);

package/dist/ts/ts/Json/Assay.d.ts

@@ -11,7 +11,7 @@ export declare const decoder: Decoder$1<ArcAssay>;
 export declare function encoderCompressed(stringTable: IMap<string, int32>, oaTable: IMap<OntologyAnnotation, int32>, cellTable: IMap<CompositeCell_$union, int32>, assay: ArcAssay): IEncodable;
 export declare function decoderCompressed(stringTable: string[], oaTable: OntologyAnnotation[], cellTable: CompositeCell_$union[]): Decoder$1<ArcAssay>;
 export declare function ROCrate_genID(a: ArcAssay): string;
-export declare function ROCrate_encoder(studyName: Option<string>, a: ArcAssay): IEncodable;
+export declare function ROCrate_encoder(assayName: Option<string>, a: ArcAssay): IEncodable;
 export declare const ROCrate_decoder: Decoder$1<ArcAssay>;
 export declare function ISAJson_encoder(studyName: Option<string>, idMap: Option<IMap<string, IEncodable>>, a: ArcAssay): IEncodable;
 export declare const ISAJson_allowedFields: FSharpList<string>;

package/dist/ts/ts/Json/Assay.js

@@ -86,8 +86,8 @@ function ROCrate_genID(a) {
     return `assays/${replace(matchValue, " ", "_")}/`;
   }
 }
-function ROCrate_encoder(studyName, a) {
-  let value, value_3, assayName;
+function ROCrate_encoder(assayName, a) {
+  let value, value_3, assayName_1;
   const fileName = Assay_fileNameFromIdentifier(a.Identifier);
   const processes = ARCtrl_ArcTables__ArcTables_GetProcesses(a);
   const dataFiles = getData(processes);
@@ -119,7 +119,7 @@ function ROCrate_encoder(studyName, a) {
     Encode(helpers_6) {
       return helpers_6.encodeString(value_7);
     }
-  }), a.Description), tryInclude("measurementType", OntologyAnnotation_ROCrate_encoderPropertyValue, a.MeasurementType), tryInclude("technologyType", OntologyAnnotation_ROCrate_encoderDefinedTerm, a.TechnologyType), tryInclude("technologyPlatform", OntologyAnnotation_ROCrate_encoderDefinedTerm, a.TechnologyPlatform), tryIncludeSeq("performers", ROCrate_encoder$1, a.Performers), tryIncludeList("dataFiles", ROCrate_encoder$4, dataFiles), tryIncludeList("processSequence", (assayName = a.Identifier, (oa_5) => ROCrate_encoder$2(studyName, assayName, oa_5)), processes), tryIncludeSeq("comments", ROCrate_encoder$3, a.Comments), ["@context", context_jsonvalue]]));
+  }), a.Description), tryInclude("measurementType", OntologyAnnotation_ROCrate_encoderPropertyValue, a.MeasurementType), tryInclude("technologyType", OntologyAnnotation_ROCrate_encoderDefinedTerm, a.TechnologyType), tryInclude("technologyPlatform", OntologyAnnotation_ROCrate_encoderDefinedTerm, a.TechnologyPlatform), tryIncludeSeq("performers", ROCrate_encoder$1, a.Performers), tryIncludeList("dataFiles", ROCrate_encoder$4, dataFiles), tryIncludeList("processSequence", (assayName_1 = a.Identifier, (oa_5) => ROCrate_encoder$2(assayName, assayName_1, oa_5)), processes), tryIncludeSeq("comments", ROCrate_encoder$3, a.Comments), ["@context", context_jsonvalue]]));
   return {
     Encode(helpers_7) {
       const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_7)], values_1);

package/dist/ts/ts/Json/Process/Component.d.ts

@@ -1,9 +1,11 @@
-import { encoder } from '../PropertyValue.js';
-import { Component } from '../../Core/Process/Component.js';
-import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
 import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
+import { Component } from '../../Core/Process/Component.js';
+import { encoder as encoder_2 } from '../PropertyValue.js';
 import { IMap } from '@fable-org/fable-library-js/Util.js';
-export declare const ROCrate_encoder: typeof encoder;
+export declare function encoder(value: Component): IEncodable;
+export declare const decoder: Decoder$1<Component>;
+export declare const ROCrate_encoder: typeof encoder_2;
 export declare const ROCrate_decoder: Decoder$1<Component>;
 export declare function ISAJson_genID(c: Component): string;
 export declare function ISAJson_encoder(idMap: Option<IMap<string, IEncodable>>, c: Component): IEncodable;

package/dist/ts/ts/Json/Process/Component.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Component.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Json/Process/Component.ts"],"names":[],"mappings":"AAAA,OAAO,EAAkB,OAAO,EAAE,MAAM,qBAAqB,CAAC;AAC9D,OAAO,EAAyF,SAAS,EAAE,MAAM,iCAAiC,CAAC;AACnJ,OAAO,EAAqB,SAAS,EAAE,UAAU,EAAE,MAAM,uDAAuD,CAAC;AACjH,OAAO,EAAyB,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAOtF,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAI3D,eAAO,MAAM,eAAe,gBAAU,CAAC;AAEvC,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,SAAS,CAA4C,CAAC;AAE9F,wBAAgB,aAAa,CAAC,CAAC,EAAE,SAAS,GAAG,MAAM,CAElD;AAED,wBAAgB,eAAe,CAAC,KAAK,EAAE,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,EAAE,CAAC,EAAE,SAAS,GAAG,UAAU,CAYjG;AAED,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,SAAS,CAc/C,CAAC"}
+{"version":3,"file":"Component.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Json/Process/Component.ts"],"names":[],"mappings":"AACA,OAAO,EAAoB,MAAM,EAAO,MAAM,uCAAuC,CAAC;AACtF,OAAO,EAAE,SAAS,EAAqB,UAAU,EAAE,MAAM,uDAAuD,CAAC;AAOjH,OAAO,EAAyF,SAAS,EAAE,MAAM,iCAAiC,CAAC;AAEnJ,OAAO,EAA+B,OAAO,IAAI,SAAS,EAAE,MAAM,qBAAqB,CAAC;AACxF,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAG3D,wBAAgB,OAAO,CAAC,KAAK,EAAE,SAAS,GAAG,UAAU,CAQpD;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,SAAS,CAMvC,CAAC;AAEH,eAAO,MAAM,eAAe,kBAAY,CAAC;AAEzC,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,SAAS,CAA8C,CAAC;AAEhG,wBAAgB,aAAa,CAAC,CAAC,EAAE,SAAS,GAAG,MAAM,CAElD;AAED,wBAAgB,eAAe,CAAC,KAAK,EAAE,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,EAAE,CAAC,EAAE,SAAS,GAAG,UAAU,CAYjG;AAED,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,SAAS,CAc/C,CAAC"}

package/dist/ts/ts/Json/Process/Component.js

@@ -1,15 +1,32 @@
-import { decoder, encoder } from '../PropertyValue.js';
-import { Component_decomposeName_Z721C83C5, Component, Component_createAsPV, Component__get_ComponentName } from '../../Core/Process/Component.js';
-import { value, map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { choose, ofArray } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { value, map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { tryInclude } from '../Encode.js';
-import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from '../OntologyAnnotation.js';
+import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_decoder, OntologyAnnotation_encoder, OntologyAnnotation_ISAJson_encoder } from '../OntologyAnnotation.js';
+import { decoder as decoder$1, encoder as encoder$1 } from './Value.js';
 import { map as map$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { Component_decomposeName_Z721C83C5, Component, Component_createAsPV, Component__get_ComponentName } from '../../Core/Process/Component.js';
 import { object } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
+import { decoder as decoder$2, encoder as encoder$2 } from '../PropertyValue.js';
 import { Decode_uri } from '../Decode.js';
 
-const ROCrate_encoder = encoder;
-const ROCrate_decoder = decoder(Component_createAsPV);
+function encoder(value) {
+  const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("type", OntologyAnnotation_encoder, value.ComponentType), tryInclude("value", (value_1) => encoder$1(void 0, value_1), value.ComponentValue), tryInclude("unit", OntologyAnnotation_encoder, value.ComponentUnit)]));
+  return {
+    Encode(helpers) {
+      const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers)], values_1);
+      return helpers.encodeObject(arg);
+    }
+  };
+}
+const decoder = object((get$) => {
+  let objectArg_1, objectArg_2;
+  let ComponentType;
+  const objectArg = get$.Optional;
+  ComponentType = objectArg.Field("type", OntologyAnnotation_decoder);
+  return new Component((objectArg_1 = get$.Optional, objectArg_1.Field("value", decoder$1)), (objectArg_2 = get$.Optional, objectArg_2.Field("unit", OntologyAnnotation_decoder)), ComponentType);
+});
+const ROCrate_encoder = encoder$2;
+const ROCrate_decoder = decoder$2(Component_createAsPV);
 function ISAJson_encoder(idMap, c) {
   const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("componentName", (value) => ({
     Encode(helpers) {
@@ -38,4 +55,4 @@ const ISAJson_decoder = object((get$) => {
   return new Component(patternInput_1[0], patternInput_1[1], (objectArg_1 = get$.Optional, objectArg_1.Field("componentType", OntologyAnnotation_ISAJson_decoder)));
 });
 
-export { ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder };
+export { ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder, decoder, encoder };

package/dist/ts/ts/Json/Process/ProcessParameterValue.js

@@ -1,18 +1,18 @@
-import { decoder as decoder$2, encoder } from '../PropertyValue.js';
+import { decoder as decoder$1, encoder } from '../PropertyValue.js';
 import { ProcessParameterValue } from '../../Core/Process/ProcessParameterValue.js';
 import { map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
 import { choose, ofArray } from '../../../node_modules/@fable-org/fable-library-js/List.js';
 import { tryInclude } from '../Encode.js';
-import { decoder, encoder as encoder$1 } from './ProtocolParameter.js';
-import { decoder as decoder$1, encoder as encoder$2 } from './Value.js';
+import { ISAJson_decoder as ISAJson_decoder$1, ISAJson_encoder as ISAJson_encoder$1 } from './ProtocolParameter.js';
+import { decoder, encoder as encoder$1 } from './Value.js';
 import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from '../OntologyAnnotation.js';
 import { map as map$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { object } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
 
 const ROCrate_encoder = encoder;
-const ROCrate_decoder = decoder$2((alternateName, measurementMethod, description, category, value, unit) => ProcessParameterValue.createAsPV(alternateName, measurementMethod, description, category, value, unit));
+const ROCrate_decoder = decoder$1((alternateName, measurementMethod, description, category, value, unit) => ProcessParameterValue.createAsPV(alternateName, measurementMethod, description, category, value, unit));
 function ISAJson_encoder(idMap, oa) {
-  const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("category", (value) => encoder$1(idMap, value), oa.Category), tryInclude("value", (value_1) => encoder$2(idMap, value_1), oa.Value), tryInclude("unit", (oa_1) => OntologyAnnotation_ISAJson_encoder(idMap, oa_1), oa.Unit)]));
+  const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("category", (value) => ISAJson_encoder$1(idMap, value), oa.Category), tryInclude("value", (value_1) => encoder$1(idMap, value_1), oa.Value), tryInclude("unit", (oa_1) => OntologyAnnotation_ISAJson_encoder(idMap, oa_1), oa.Unit)]));
   return {
     Encode(helpers) {
       const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers)], values_1);
@@ -22,7 +22,7 @@ function ISAJson_encoder(idMap, oa) {
 }
 const ISAJson_decoder = object((get$) => {
   let objectArg, objectArg_1, objectArg_2;
-  return new ProcessParameterValue((objectArg = get$.Optional, objectArg.Field("category", decoder)), (objectArg_1 = get$.Optional, objectArg_1.Field("value", decoder$1)), (objectArg_2 = get$.Optional, objectArg_2.Field("unit", OntologyAnnotation_ISAJson_decoder)));
+  return new ProcessParameterValue((objectArg = get$.Optional, objectArg.Field("category", ISAJson_decoder$1)), (objectArg_1 = get$.Optional, objectArg_1.Field("value", decoder)), (objectArg_2 = get$.Optional, objectArg_2.Field("unit", OntologyAnnotation_ISAJson_decoder)));
 });
 
 export { ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder };

package/dist/ts/ts/Json/Process/Protocol.js

@@ -5,14 +5,14 @@ import { append, empty, choose, ofArray, singleton } from '../../../node_modules
 import { list as list$1 } from '../../fable_modules/Thoth.Json.Core.0.7.0/Encode.fs.js';
 import { tryInclude, tryIncludeListOpt } from '../Encode.js';
 import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ROCrate_decoderDefinedTerm, OntologyAnnotation_ROCrate_encoderDefinedTerm, OntologyAnnotation_ISAJson_encoder } from '../OntologyAnnotation.js';
-import { ISAJson_decoder as ISAJson_decoder$1, ROCrate_decoder as ROCrate_decoder$1, ROCrate_encoder as ROCrate_encoder$1, ISAJson_encoder as ISAJson_encoder$1 } from './Component.js';
-import { ISAJson_decoder as ISAJson_decoder$2, ROCrate_decoder as ROCrate_decoder$2, ROCrate_encoder as ROCrate_encoder$2, ISAJson_encoder as ISAJson_encoder$2 } from '../Comment.js';
+import { ISAJson_decoder as ISAJson_decoder$2, ROCrate_decoder as ROCrate_decoder$1, ROCrate_encoder as ROCrate_encoder$1, ISAJson_encoder as ISAJson_encoder$2 } from './Component.js';
+import { ISAJson_decoder as ISAJson_decoder$3, ROCrate_decoder as ROCrate_decoder$2, ROCrate_encoder as ROCrate_encoder$2, ISAJson_encoder as ISAJson_encoder$3 } from '../Comment.js';
 import { context_jsonvalue } from '../context/rocrate/isa_protocol_context.js';
 import { map as map$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { object, string, list } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
 import { Option_fromValueWithDefault } from '../../Core/Helper/Collections.js';
 import { Decode_uri } from '../Decode.js';
-import { decoder, encoder } from './ProtocolParameter.js';
+import { ISAJson_decoder as ISAJson_decoder$1, ISAJson_encoder as ISAJson_encoder$1 } from './ProtocolParameter.js';
 import { encode } from '../IDTable.js';
 
 function ROCrate_genID(studyName, assayName, processName, p) {
@@ -144,7 +144,7 @@ function ISAJson_encoder(studyName, assayName, processName, idMap, oa) {
       Encode(helpers_4) {
         return helpers_4.encodeString(value_8);
       }
-    }), oa_1.Version), tryIncludeListOpt("parameters", (value_10) => encoder(idMap, value_10), oa_1.Parameters), tryIncludeListOpt("components", (c) => ISAJson_encoder$1(idMap, c), oa_1.Components), tryIncludeListOpt("comments", (comment) => ISAJson_encoder$2(idMap, comment), oa_1.Comments)]));
+    }), oa_1.Version), tryIncludeListOpt("parameters", (value_10) => ISAJson_encoder$1(idMap, value_10), oa_1.Parameters), tryIncludeListOpt("components", (c) => ISAJson_encoder$2(idMap, c), oa_1.Components), tryIncludeListOpt("comments", (comment) => ISAJson_encoder$3(idMap, comment), oa_1.Comments)]));
     return {
       Encode(helpers_5) {
         const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_5)], values_1);
@@ -160,7 +160,7 @@ function ISAJson_encoder(studyName, assayName, processName, idMap, oa) {
 }
 const ISAJson_decoder = object((get$) => {
   let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8;
-  return new Protocol((objectArg = get$.Optional, objectArg.Field("@id", Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", string)), (objectArg_2 = get$.Optional, objectArg_2.Field("protocolType", OntologyAnnotation_ISAJson_decoder)), (objectArg_3 = get$.Optional, objectArg_3.Field("description", string)), (objectArg_4 = get$.Optional, objectArg_4.Field("uri", Decode_uri)), (objectArg_5 = get$.Optional, objectArg_5.Field("version", string)), (arg_13 = list(decoder), objectArg_6 = get$.Optional, objectArg_6.Field("parameters", arg_13)), (arg_15 = list(ISAJson_decoder$1), objectArg_7 = get$.Optional, objectArg_7.Field("components", arg_15)), (arg_17 = list(ISAJson_decoder$2), objectArg_8 = get$.Optional, objectArg_8.Field("comments", arg_17)));
+  return new Protocol((objectArg = get$.Optional, objectArg.Field("@id", Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", string)), (objectArg_2 = get$.Optional, objectArg_2.Field("protocolType", OntologyAnnotation_ISAJson_decoder)), (objectArg_3 = get$.Optional, objectArg_3.Field("description", string)), (objectArg_4 = get$.Optional, objectArg_4.Field("uri", Decode_uri)), (objectArg_5 = get$.Optional, objectArg_5.Field("version", string)), (arg_13 = list(ISAJson_decoder$1), objectArg_6 = get$.Optional, objectArg_6.Field("parameters", arg_13)), (arg_15 = list(ISAJson_decoder$2), objectArg_7 = get$.Optional, objectArg_7.Field("components", arg_15)), (arg_17 = list(ISAJson_decoder$3), objectArg_8 = get$.Optional, objectArg_8.Field("comments", arg_17)));
 });
 
 export { ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder, ROCrate_genID };

package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts

@@ -2,7 +2,9 @@ import { Option } from '@fable-org/fable-library-js/Option.js';
 import { ProtocolParameter } from '../../Core/Process/ProtocolParameter.js';
 import { Decoder$1, IEncodable } from '../../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
 import { IMap } from '@fable-org/fable-library-js/Util.js';
-export declare function genID(p: ProtocolParameter): string;
-export declare function encoder(idMap: Option<IMap<string, IEncodable>>, value: ProtocolParameter): IEncodable;
+export declare function encoder(value: ProtocolParameter): IEncodable;
 export declare const decoder: Decoder$1<ProtocolParameter>;
+export declare function ISAJson_genID(p: ProtocolParameter): string;
+export declare function ISAJson_encoder(idMap: Option<IMap<string, IEncodable>>, value: ProtocolParameter): IEncodable;
+export declare const ISAJson_decoder: Decoder$1<ProtocolParameter>;
 //# sourceMappingURL=ProtocolParameter.d.ts.map

package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ProtocolParameter.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Json/Process/ProtocolParameter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAyB,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAGtF,OAAO,EAAE,iBAAiB,EAAE,MAAM,yCAAyC,CAAC;AAE5E,OAAO,EAAE,SAAS,EAAqB,UAAU,EAAE,MAAM,uDAAuD,CAAC;AAIjH,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAG3D,wBAAgB,KAAK,CAAC,CAAC,EAAE,iBAAiB,GAAG,MAAM,CAQlD;AAED,wBAAgB,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,EAAE,KAAK,EAAE,iBAAiB,GAAG,UAAU,CAoBrG;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,iBAAiB,CAG/C,CAAC"}
+{"version":3,"file":"ProtocolParameter.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Json/Process/ProtocolParameter.ts"],"names":[],"mappings":"AACA,OAAO,EAA0C,MAAM,EAAc,MAAM,uCAAuC,CAAC;AAEnH,OAAO,EAAE,iBAAiB,EAAE,MAAM,yCAAyC,CAAC;AAC5E,OAAO,EAAqB,SAAS,EAAE,UAAU,EAAE,MAAM,uDAAuD,CAAC;AAOjH,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAE3D,wBAAgB,OAAO,CAAC,KAAK,EAAE,iBAAiB,GAAG,UAAU,CAE5D;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,iBAAiB,CAGnB,CAAC;AAE/B,wBAAgB,aAAa,CAAC,CAAC,EAAE,iBAAiB,GAAG,MAAM,CAQ1D;AAED,wBAAgB,eAAe,CAAC,KAAK,EAAE,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,EAAE,KAAK,EAAE,iBAAiB,GAAG,UAAU,CAoB7G;AAED,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,iBAAiB,CAGvD,CAAC"}

package/dist/ts/ts/Json/Process/ProtocolParameter.js

@@ -1,13 +1,22 @@
-import { value, map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
-import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder, OntologyAnnotation_ROCrate_genID } from '../OntologyAnnotation.js';
+import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_decoder, OntologyAnnotation_encoder, OntologyAnnotation_ISAJson_encoder, OntologyAnnotation_ROCrate_genID } from '../OntologyAnnotation.js';
+import { unwrap, defaultArg, value, map as map$1 } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
 import { ProtocolParameter } from '../../Core/Process/ProtocolParameter.js';
+import { object, map } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
+import { Option_fromValueWithDefault } from '../../Core/Helper/Collections.js';
 import { choose, ofArray } from '../../../node_modules/@fable-org/fable-library-js/List.js';
 import { tryInclude } from '../Encode.js';
-import { map as map$1 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { map as map$2 } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { encode } from '../IDTable.js';
-import { object } from '../../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
 
-function genID(p) {
+function encoder(value) {
+  return OntologyAnnotation_encoder(defaultArg(value.ParameterName, new OntologyAnnotation()));
+}
+const decoder = map((oa) => {
+  const oa_1 = Option_fromValueWithDefault(new OntologyAnnotation(), oa);
+  return ProtocolParameter.create(void 0, unwrap(oa_1));
+}, OntologyAnnotation_decoder);
+function ISAJson_genID(p) {
   const matchValue = p.ParameterName;
   if (matchValue == null) {
     return "#EmptyProtocolParameter";
@@ -15,29 +24,29 @@ function genID(p) {
     return `#ProtocolParameter/${OntologyAnnotation_ROCrate_genID(value(matchValue))}`;
   }
 }
-function encoder(idMap, value$1) {
+function ISAJson_encoder(idMap, value$1) {
   const f = (value_1) => {
-    const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("@id", (value_2) => ({
+    const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("@id", (value_2) => ({
       Encode(helpers) {
         return helpers.encodeString(value_2);
       }
-    }), genID(value_1)), tryInclude("parameterName", (oa) => OntologyAnnotation_ISAJson_encoder(idMap, oa), value_1.ParameterName)]));
+    }), ISAJson_genID(value_1)), tryInclude("parameterName", (oa) => OntologyAnnotation_ISAJson_encoder(idMap, oa), value_1.ParameterName)]));
     return {
       Encode(helpers_1) {
-        const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_1)], values_1);
+        const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_1)], values_1);
         return helpers_1.encodeObject(arg);
       }
     };
   };
   if (idMap != null) {
-    return encode(genID, f, value$1, value(idMap));
+    return encode(ISAJson_genID, f, value$1, value(idMap));
   } else {
     return f(value$1);
   }
 }
-const decoder = object((get$) => {
+const ISAJson_decoder = object((get$) => {
   let objectArg;
   return new ProtocolParameter(void 0, (objectArg = get$.Optional, objectArg.Field("parameterName", OntologyAnnotation_ISAJson_decoder)));
 });
 
-export { decoder, encoder, genID };
+export { ISAJson_decoder, ISAJson_encoder, ISAJson_genID, decoder, encoder };

package/dist/ts/ts/Json/Run.d.ts

@@ -0,0 +1,11 @@
+import { Decoder$1, IEncodable } from '../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
+import { OntologyAnnotation } from '../Core/OntologyAnnotation.js';
+import { ArcRun } from '../Core/ArcTypes.js';
+import { IMap } from '@fable-org/fable-library-js/Util.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { CompositeCell_$union } from '../Core/Table/CompositeCell.js';
+export declare function encoder(run: ArcRun): IEncodable;
+export declare const decoder: Decoder$1<ArcRun>;
+export declare function encoderCompressed(stringTable: IMap<string, int32>, oaTable: IMap<OntologyAnnotation, int32>, cellTable: IMap<CompositeCell_$union, int32>, run: ArcRun): IEncodable;
+export declare function decoderCompressed(stringTable: string[], oaTable: OntologyAnnotation[], cellTable: CompositeCell_$union[]): Decoder$1<ArcRun>;
+//# sourceMappingURL=Run.d.ts.map

package/dist/ts/ts/Json/Run.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Run.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Json/Run.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,SAAS,EAAqB,UAAU,EAAE,MAAM,oDAAoD,CAAC;AAG9G,OAAO,EAAE,kBAAkB,EAAE,MAAM,+BAA+B,CAAC;AAUnE,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAE7C,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAC3D,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAE,oBAAoB,EAAE,MAAM,gCAAgC,CAAC;AAEtE,wBAAgB,OAAO,CAAC,GAAG,EAAE,MAAM,GAAG,UAAU,CAyB/C;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,MAAM,CAGpC,CAAC;AAEH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,IAAI,CAAC,kBAAkB,EAAE,KAAK,CAAC,EAAE,SAAS,EAAE,IAAI,CAAC,oBAAoB,EAAE,KAAK,CAAC,EAAE,GAAG,EAAE,MAAM,GAAG,UAAU,CAyBnL;AAED,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,MAAM,EAAE,EAAE,OAAO,EAAE,kBAAkB,EAAE,EAAE,SAAS,EAAE,oBAAoB,EAAE,GAAG,SAAS,CAAC,MAAM,CAAC,CAK5I"}

package/dist/ts/ts/Json/Run.js

@@ -0,0 +1,76 @@
+import { choose, ofArray } from '../../node_modules/@fable-org/fable-library-js/List.js';
+import { unwrap, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { tryInclude, tryIncludeSeq } from './Encode.js';
+import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from './OntologyAnnotation.js';
+import { decoder as decoder$2, decoderCompressed as decoderCompressed$2, encoder as encoder$1, encoderCompressed as encoderCompressed$1 } from './DataMap/DataMap.js';
+import { decoder as decoder$1, decoderCompressed as decoderCompressed$1, encoder as encoder$2, encoderCompressed as encoderCompressed$2 } from './Table/ArcTable.js';
+import { decoder as decoder$3, encoder as encoder$3 } from './Person.js';
+import { decoder as decoder$4, encoder as encoder$4 } from './Comment.js';
+import { map as map$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { ArcRun } from '../Core/ArcTypes.js';
+import { object, string, resizeArray } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
+
+function encoder(run) {
+  let value;
+  const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["Identifier", (value = run.Identifier, {
+    Encode(helpers) {
+      return helpers.encodeString(value);
+    }
+  })], tryInclude("Title", (value_1) => ({
+    Encode(helpers_1) {
+      return helpers_1.encodeString(value_1);
+    }
+  }), run.Title), tryInclude("Description", (value_3) => ({
+    Encode(helpers_2) {
+      return helpers_2.encodeString(value_3);
+    }
+  }), run.Description), tryInclude("MeasurementType", OntologyAnnotation_encoder, run.MeasurementType), tryInclude("TechnologyType", OntologyAnnotation_encoder, run.TechnologyType), tryInclude("TechnologyPlatform", OntologyAnnotation_encoder, run.TechnologyPlatform), tryInclude("DataMap", encoder$1, run.DataMap), tryIncludeSeq("WorkflowIdentifiers", (value_5) => ({
+    Encode(helpers_3) {
+      return helpers_3.encodeString(value_5);
+    }
+  }), run.WorkflowIdentifiers), tryIncludeSeq("Tables", encoder$2, run.Tables), tryIncludeSeq("Performers", encoder$3, run.Performers), tryIncludeSeq("Comments", encoder$4, run.Comments)]));
+  return {
+    Encode(helpers_4) {
+      const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
+      return helpers_4.encodeObject(arg);
+    }
+  };
+}
+const decoder = object((get$) => {
+  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10;
+  return ArcRun.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("MeasurementType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("TechnologyType", OntologyAnnotation_decoder))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("TechnologyPlatform", OntologyAnnotation_decoder))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("WorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoder$1), objectArg_7 = get$.Optional, objectArg_7.Field("Tables", arg_15))), unwrap((objectArg_8 = get$.Optional, objectArg_8.Field("DataMap", decoder$2))), unwrap((arg_19 = resizeArray(decoder$3), objectArg_9 = get$.Optional, objectArg_9.Field("Performers", arg_19))), unwrap((arg_21 = resizeArray(decoder$4), objectArg_10 = get$.Optional, objectArg_10.Field("Comments", arg_21))));
+});
+function encoderCompressed(stringTable, oaTable, cellTable, run) {
+  let value;
+  const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["Identifier", (value = run.Identifier, {
+    Encode(helpers) {
+      return helpers.encodeString(value);
+    }
+  })], tryInclude("Title", (value_1) => ({
+    Encode(helpers_1) {
+      return helpers_1.encodeString(value_1);
+    }
+  }), run.Title), tryInclude("Description", (value_3) => ({
+    Encode(helpers_2) {
+      return helpers_2.encodeString(value_3);
+    }
+  }), run.Description), tryInclude("MeasurementType", OntologyAnnotation_encoder, run.MeasurementType), tryInclude("TechnologyType", OntologyAnnotation_encoder, run.TechnologyType), tryInclude("TechnologyPlatform", OntologyAnnotation_encoder, run.TechnologyPlatform), tryInclude("DataMap", (dm) => encoderCompressed$1(stringTable, oaTable, cellTable, dm), run.DataMap), tryIncludeSeq("WorkflowIdentifiers", (value_5) => ({
+    Encode(helpers_3) {
+      return helpers_3.encodeString(value_5);
+    }
+  }), run.WorkflowIdentifiers), tryIncludeSeq("Tables", (table) => encoderCompressed$2(stringTable, oaTable, cellTable, table), run.Tables), tryIncludeSeq("Performers", encoder$3, run.Performers), tryIncludeSeq("Comments", encoder$4, run.Comments)]));
+  return {
+    Encode(helpers_4) {
+      const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
+      return helpers_4.encodeObject(arg);
+    }
+  };
+}
+function decoderCompressed(stringTable, oaTable, cellTable) {
+  return object((get$) => {
+    let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10;
+    return ArcRun.create((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("MeasurementType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("TechnologyType", OntologyAnnotation_decoder))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("TechnologyPlatform", OntologyAnnotation_decoder))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("WorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoderCompressed$1(stringTable, oaTable, cellTable)), objectArg_7 = get$.Optional, objectArg_7.Field("Tables", arg_15))), unwrap((arg_17 = decoderCompressed$2(), objectArg_8 = get$.Optional, objectArg_8.Field("DataMap", arg_17))), unwrap((arg_19 = resizeArray(decoder$3), objectArg_9 = get$.Optional, objectArg_9.Field("Performers", arg_19))), unwrap((arg_21 = resizeArray(decoder$4), objectArg_10 = get$.Optional, objectArg_10.Field("Comments", arg_21))));
+  });
+}
+
+export { decoder, decoderCompressed, encoder, encoderCompressed };

package/dist/ts/ts/Json/Study.js

@@ -122,7 +122,7 @@ function ROCrate_genID(a) {
   }
 }
 function ROCrate_encoder(assays, s) {
-  let value, value_3, studyName, studyName_1;
+  let value, value_3, studyName, assayName_1;
   const fileName = Study_tryFileNameFromIdentifier(s.Identifier);
   const processes = ARCtrl_ArcTables__ArcTables_GetProcesses(s);
   const assays_1 = Helper_getAssayInformation(assays, s);
@@ -162,7 +162,7 @@ function ROCrate_encoder(assays, s) {
     Encode(helpers_8) {
       return helpers_8.encodeString(value_12);
     }
-  }), s.PublicReleaseDate), tryIncludeSeq("publications", ROCrate_encoder$1, s.Publications), tryIncludeSeq("people", ROCrate_encoder$2, s.Contacts), tryIncludeList("processSequence", (studyName = s.Identifier, (oa_3) => ROCrate_encoder$3(studyName, void 0, oa_3)), processes), tryIncludeSeq("assays", (studyName_1 = s.Identifier, (a_1) => ROCrate_encoder$4(studyName_1, a_1)), assays_1), tryIncludeList("dataFiles", ROCrate_encoder$5, getData(processes)), tryIncludeSeq("comments", ROCrate_encoder$6, s.Comments), ["@context", context_jsonvalue]]));
+  }), s.PublicReleaseDate), tryIncludeSeq("publications", ROCrate_encoder$1, s.Publications), tryIncludeSeq("people", ROCrate_encoder$2, s.Contacts), tryIncludeList("processSequence", (studyName = s.Identifier, (oa_3) => ROCrate_encoder$3(studyName, void 0, oa_3)), processes), tryIncludeSeq("assays", (assayName_1 = s.Identifier, (a_1) => ROCrate_encoder$4(assayName_1, a_1)), assays_1), tryIncludeList("dataFiles", ROCrate_encoder$5, getData(processes)), tryIncludeSeq("comments", ROCrate_encoder$6, s.Comments), ["@context", context_jsonvalue]]));
   return {
     Encode(helpers_9) {
       const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_9)], values_1);

package/dist/ts/ts/Json/Workflow.d.ts

@@ -0,0 +1,11 @@
+import { Decoder$1, IEncodable } from '../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
+import { ArcWorkflow } from '../Core/ArcTypes.js';
+import { OntologyAnnotation } from '../Core/OntologyAnnotation.js';
+import { IMap } from '@fable-org/fable-library-js/Util.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { CompositeCell_$union } from '../Core/Table/CompositeCell.js';
+export declare function encoder(workflow: ArcWorkflow): IEncodable;
+export declare const decoder: Decoder$1<ArcWorkflow>;
+export declare function encoderCompressed(stringTable: IMap<string, int32>, oaTable: IMap<OntologyAnnotation, int32>, cellTable: IMap<CompositeCell_$union, int32>, workflow: ArcWorkflow): IEncodable;
+export declare function decoderCompressed(stringTable: string[], oaTable: OntologyAnnotation[], cellTable: CompositeCell_$union[]): Decoder$1<ArcWorkflow>;
+//# sourceMappingURL=Workflow.d.ts.map

package/dist/ts/ts/Json/Workflow.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Workflow.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Json/Workflow.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,SAAS,EAAqB,UAAU,EAAE,MAAM,oDAAoD,CAAC;AAC9G,OAAO,EAAgC,WAAW,EAAuV,MAAM,qBAAqB,CAAC;AAGra,OAAO,EAAE,kBAAkB,EAAE,MAAM,+BAA+B,CAAC;AAanE,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAC3D,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAE,oBAAoB,EAAE,MAAM,gCAAgC,CAAC;AAEtE,wBAAgB,OAAO,CAAC,QAAQ,EAAE,WAAW,GAAG,UAAU,CAiCzD;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,WAAW,CAGzC,CAAC;AAEH,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,IAAI,CAAC,kBAAkB,EAAE,KAAK,CAAC,EAAE,SAAS,EAAE,IAAI,CAAC,oBAAoB,EAAE,KAAK,CAAC,EAAE,QAAQ,EAAE,WAAW,GAAG,UAAU,CAiC7L;AAED,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,MAAM,EAAE,EAAE,OAAO,EAAE,kBAAkB,EAAE,EAAE,SAAS,EAAE,oBAAoB,EAAE,GAAG,SAAS,CAAC,WAAW,CAAC,CAKjJ"}

package/dist/ts/ts/Json/Workflow.js

@@ -0,0 +1,93 @@
+import { choose, ofArray } from '../../node_modules/@fable-org/fable-library-js/List.js';
+import { unwrap, map } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { ArcWorkflow_create_Z3BB02240, ArcWorkflow__get_Identifier, ArcWorkflow__get_WorkflowType, ArcWorkflow__get_Title, ArcWorkflow__get_URI, ArcWorkflow__get_Description, ArcWorkflow__get_Version, ArcWorkflow__get_DataMap, ArcWorkflow__get_SubWorkflowIdentifiers, ArcWorkflow__get_Parameters, ArcWorkflow__get_Components, ArcWorkflow__get_Contacts, ArcWorkflow__get_Comments } from '../Core/ArcTypes.js';
+import { tryInclude, tryIncludeSeq } from './Encode.js';
+import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from './OntologyAnnotation.js';
+import { decoder as decoder$3, decoderCompressed as decoderCompressed$1, encoder as encoder$1, encoderCompressed as encoderCompressed$1 } from './DataMap/DataMap.js';
+import { decoder as decoder$5, encoder as encoder$2 } from './Process/ProtocolParameter.js';
+import { decoder as decoder$4, encoder as encoder$3 } from './Process/Component.js';
+import { decoder as decoder$2, encoder as encoder$4 } from './Person.js';
+import { decoder as decoder$1, encoder as encoder$5 } from './Comment.js';
+import { map as map$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { object, resizeArray, string } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
+
+function encoder(workflow) {
+  let value;
+  const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["Identifier", (value = ArcWorkflow__get_Identifier(workflow), {
+    Encode(helpers) {
+      return helpers.encodeString(value);
+    }
+  })], tryInclude("WorkflowType", OntologyAnnotation_encoder, ArcWorkflow__get_WorkflowType(workflow)), tryInclude("Title", (value_1) => ({
+    Encode(helpers_1) {
+      return helpers_1.encodeString(value_1);
+    }
+  }), ArcWorkflow__get_Title(workflow)), tryInclude("URI", (value_3) => ({
+    Encode(helpers_2) {
+      return helpers_2.encodeString(value_3);
+    }
+  }), ArcWorkflow__get_URI(workflow)), tryInclude("Description", (value_5) => ({
+    Encode(helpers_3) {
+      return helpers_3.encodeString(value_5);
+    }
+  }), ArcWorkflow__get_Description(workflow)), tryInclude("Version", (value_7) => ({
+    Encode(helpers_4) {
+      return helpers_4.encodeString(value_7);
+    }
+  }), ArcWorkflow__get_Version(workflow)), tryInclude("DataMap", encoder$1, ArcWorkflow__get_DataMap(workflow)), tryIncludeSeq("SubWorkflowIdentifiers", (value_9) => ({
+    Encode(helpers_5) {
+      return helpers_5.encodeString(value_9);
+    }
+  }), ArcWorkflow__get_SubWorkflowIdentifiers(workflow)), tryIncludeSeq("Parameters", encoder$2, ArcWorkflow__get_Parameters(workflow)), tryIncludeSeq("Components", encoder$3, ArcWorkflow__get_Components(workflow)), tryIncludeSeq("Contacts", encoder$4, ArcWorkflow__get_Contacts(workflow)), tryIncludeSeq("Comments", encoder$5, ArcWorkflow__get_Comments(workflow))]));
+  return {
+    Encode(helpers_6) {
+      const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
+      return helpers_6.encodeObject(arg);
+    }
+  };
+}
+const decoder = object((get$) => {
+  let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
+  return ArcWorkflow_create_Z3BB02240((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("WorkflowType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("URI", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("Version", string))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("SubWorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoder$5), objectArg_7 = get$.Optional, objectArg_7.Field("Parameters", arg_15))), unwrap((arg_17 = resizeArray(decoder$4), objectArg_8 = get$.Optional, objectArg_8.Field("Components", arg_17))), unwrap((objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", decoder$3))), unwrap((arg_21 = resizeArray(decoder$2), objectArg_10 = get$.Optional, objectArg_10.Field("Contacts", arg_21))), unwrap((arg_23 = resizeArray(decoder$1), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
+});
+function encoderCompressed(stringTable, oaTable, cellTable, workflow) {
+  let value;
+  const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["Identifier", (value = ArcWorkflow__get_Identifier(workflow), {
+    Encode(helpers) {
+      return helpers.encodeString(value);
+    }
+  })], tryInclude("WorkflowType", OntologyAnnotation_encoder, ArcWorkflow__get_WorkflowType(workflow)), tryInclude("Title", (value_1) => ({
+    Encode(helpers_1) {
+      return helpers_1.encodeString(value_1);
+    }
+  }), ArcWorkflow__get_Title(workflow)), tryInclude("URI", (value_3) => ({
+    Encode(helpers_2) {
+      return helpers_2.encodeString(value_3);
+    }
+  }), ArcWorkflow__get_URI(workflow)), tryInclude("Description", (value_5) => ({
+    Encode(helpers_3) {
+      return helpers_3.encodeString(value_5);
+    }
+  }), ArcWorkflow__get_Description(workflow)), tryInclude("Version", (value_7) => ({
+    Encode(helpers_4) {
+      return helpers_4.encodeString(value_7);
+    }
+  }), ArcWorkflow__get_Version(workflow)), tryInclude("DataMap", (dm) => encoderCompressed$1(stringTable, oaTable, cellTable, dm), ArcWorkflow__get_DataMap(workflow)), tryIncludeSeq("SubWorkflowIdentifiers", (value_9) => ({
+    Encode(helpers_5) {
+      return helpers_5.encodeString(value_9);
+    }
+  }), ArcWorkflow__get_SubWorkflowIdentifiers(workflow)), tryIncludeSeq("Parameters", encoder$2, ArcWorkflow__get_Parameters(workflow)), tryIncludeSeq("Components", encoder$3, ArcWorkflow__get_Components(workflow)), tryIncludeSeq("Contacts", encoder$4, ArcWorkflow__get_Contacts(workflow)), tryIncludeSeq("Comments", encoder$5, ArcWorkflow__get_Comments(workflow))]));
+  return {
+    Encode(helpers_6) {
+      const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
+      return helpers_6.encodeObject(arg);
+    }
+  };
+}
+function decoderCompressed(stringTable, oaTable, cellTable) {
+  return object((get$) => {
+    let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
+    return ArcWorkflow_create_Z3BB02240((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("WorkflowType", OntologyAnnotation_decoder))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("URI", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("Version", string))), unwrap((arg_13 = resizeArray(string), objectArg_6 = get$.Optional, objectArg_6.Field("SubWorkflowIdentifiers", arg_13))), unwrap((arg_15 = resizeArray(decoder$5), objectArg_7 = get$.Optional, objectArg_7.Field("Parameters", arg_15))), unwrap((arg_17 = resizeArray(decoder$4), objectArg_8 = get$.Optional, objectArg_8.Field("Components", arg_17))), unwrap((arg_19 = decoderCompressed$1(), objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", arg_19))), unwrap((arg_21 = resizeArray(decoder$2), objectArg_10 = get$.Optional, objectArg_10.Field("Contacts", arg_21))), unwrap((arg_23 = resizeArray(decoder$1), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
+  });
+}
+
+export { decoder, decoderCompressed, encoder, encoderCompressed };

package/dist/ts/ts/Json.d.ts

@@ -1,7 +1,7 @@
 import { OntologyAnnotation } from './Core/OntologyAnnotation.js';
 import { int32 } from '@fable-org/fable-library-js/Int32.js';
 import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
-import { ArcInvestigation, ArcStudy, ArcAssay } from './Core/ArcTypes.js';
+import { ArcInvestigation, ArcRun, ArcWorkflow, ArcStudy, ArcAssay } from './Core/ArcTypes.js';
 import { FSharpList } from '@fable-org/fable-library-js/List.js';
 import { ARC } from './ARC.js';
 import { LDNode, LDGraph } from './ROCrate/LDObject.js';
@@ -42,6 +42,24 @@ export declare class JsonHelper_StudyJson {
 }
 export declare function JsonHelper_StudyJson_$reflection(): TypeInfo;
 export declare function JsonHelper_StudyJson_$ctor(): JsonHelper_StudyJson;
+export declare class JsonHelper_WorkflowJson {
+    constructor();
+    fromJsonString(s: string): ArcWorkflow;
+    fromCompressedJsonString(s: string): ArcWorkflow;
+    toJsonString(workflow: ArcWorkflow, spaces?: int32): string;
+    toCompressedJsonString(workflow: ArcWorkflow, spaces?: int32): string;
+}
+export declare function JsonHelper_WorkflowJson_$reflection(): TypeInfo;
+export declare function JsonHelper_WorkflowJson_$ctor(): JsonHelper_WorkflowJson;
+export declare class JsonHelper_RunJson {
+    constructor();
+    fromJsonString(s: string): ArcRun;
+    fromCompressedJsonString(s: string): ArcRun;
+    toJsonString(run: ArcRun, spaces?: int32): string;
+    toCompressedJsonString(run: ArcRun, spaces?: int32): string;
+}
+export declare function JsonHelper_RunJson_$reflection(): TypeInfo;
+export declare function JsonHelper_RunJson_$ctor(): JsonHelper_RunJson;
 export declare class JsonHelper_InvestigationJson {
     constructor();
     fromJsonString(s: string): ArcInvestigation;
@@ -81,6 +99,8 @@ export declare class JsonController {
     static get OntologyAnnotation(): JsonHelper_OntologyAnnotationJson;
     static get Assay(): JsonHelper_AssayJson;
     static get Study(): JsonHelper_StudyJson;
+    static get Workflow(): JsonHelper_WorkflowJson;
+    static get Run(): JsonHelper_RunJson;
     static get Investigation(): JsonHelper_InvestigationJson;
     static get ARC(): JsonHelper_ARCJson;
     static get LDGraph(): JsonHelper_LDGraphJson;

package/dist/ts/ts/Json.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"Json.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/Json.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,kBAAkB,EAAE,MAAM,8BAA8B,CAAC;AAElE,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,OAAO,EAAE,gBAAgB,EAAE,MAAM,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAE/F,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAIjE,OAAO,EAAE,GAAG,EAAE,MAAM,UAAU,CAAC;AAE/B,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,uBAAuB,CAAC;AAExD,qBAAa,iCAAiC;;IAG1C,cAAc,CAAC,CAAC,EAAE,MAAM,GAAG,kBAAkB;IAG7C,iBAAiB,CAAC,CAAC,EAAE,MAAM,GAAG,kBAAkB;IAGhD,qBAAqB,CAAC,CAAC,EAAE,MAAM,GAAG,kBAAkB;IAGpD,YAAY,CAAC,EAAE,EAAE,kBAAkB,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;IAG5D,eAAe,CAAC,EAAE,EAAE,kBAAkB,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;IAG/D,mBAAmB,CAAC,EAAE,EAAE,kBAAkB,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;CAGtE;AAED,wBAAgB,6CAA6C,IAAI,QAAQ,CAExE;AAED,wBAAgB,uCAAuC,IAAI,iCAAiC,CAE3F;AAED,qBAAa,oBAAoB;;IAG7B,cAAc,CAAC,CAAC,EAAE,MAAM,GAAG,QAAQ;IAGnC,wBAAwB,CAAC,CAAC,EAAE,MAAM,GAAG,QAAQ;IAG7C,iBAAiB,CAAC,CAAC,EAAE,MAAM,GAAG,QAAQ;IAGtC,qBAAqB,CAAC,CAAC,EAAE,MAAM,GAAG,QAAQ;IAG1C,YAAY,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;IAGrD,sBAAsB,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;IAG/D,eAAe,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,KAAK,EAAE,gBAAgB,CAAC,EAAE,OAAO,GAAG,MAAM;IAGpF,mBAAmB,CAAC,KAAK,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;CAGlF;AAED,wBAAgB,gCAAgC,IAAI,QAAQ,CAE3D;AAED,wBAAgB,0BAA0B,IAAI,oBAAoB,CAEjE;AAED,qBAAa,oBAAoB;;IAG7B,cAAc,CAAC,CAAC,EAAE,MAAM,GAAG,QAAQ;IAGnC,wBAAwB,CAAC,CAAC,EAAE,MAAM,GAAG,QAAQ;IAG7C,iBAAiB,CAAC,CAAC,EAAE,MAAM,GAAG,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC;IAG9D,qBAAqB,CAAC,CAAC,EAAE,MAAM,GAAG,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC;IAGlE,YAAY,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;IAGrD,sBAAsB,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;IAG/D,eAAe,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,UAAU,CAAC,QAAQ,CAAC,EAAE,MAAM,CAAC,EAAE,KAAK,EAAE,gBAAgB,CAAC,EAAE,OAAO,GAAG,MAAM;IAGnH,mBAAmB,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,UAAU,CAAC,QAAQ,CAAC,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;CAG9F;AAED,wBAAgB,gCAAgC,IAAI,QAAQ,CAE3D;AAED,wBAAgB,0BAA0B,IAAI,oBAAoB,CAEjE;AAED,qBAAa,uBAAuB;;IAGhC,cAAc,CAAC,CAAC,EAAE,MAAM,GAAG,WAAW;IAGtC,wBAAwB,CAAC,CAAC,EAAE,MAAM,GAAG,WAAW;IAGhD,YAAY,CAAC,QAAQ,EAAE,WAAW,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;IAG3D,sBAAsB,CAAC,QAAQ,EAAE,WAAW,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;CAGxE;AAED,wBAAgB,mCAAmC,IAAI,QAAQ,CAE9D;AAED,wBAAgB,6BAA6B,IAAI,uBAAuB,CAEvE;AAED,qBAAa,kBAAkB;;IAG3B,cAAc,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM;IAGjC,wBAAwB,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM;IAG3C,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;IAGjD,sBAAsB,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;CAG9D;AAED,wBAAgB,8BAA8B,IAAI,QAAQ,CAEzD;AAED,wBAAgB,wBAAwB,IAAI,kBAAkB,CAE7D;AAED,qBAAa,4BAA4B;;IAGrC,cAAc,CAAC,CAAC,EAAE,MAAM,GAAG,gBAAgB;IAG3C,wBAAwB,CAAC,CAAC,EAAE,MAAM,GAAG,gBAAgB;IAGrD,iBAAiB,CAAC,CAAC,EAAE,MAAM,GAAG,gBAAgB;IAG9C,qBAAqB,CAAC,CAAC,EAAE,MAAM,GAAG,gBAAgB;IAGlD,YAAY,CAAC,aAAa,EAAE,gBAAgB,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;IAGrE,sBAAsB,CAAC,aAAa,EAAE,gBAAgB,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;IAG/E,eAAe,CAAC,aAAa,EAAE,gBAAgB,EAAE,MAAM,CAAC,EAAE,KAAK,EAAE,gBAAgB,CAAC,EAAE,OAAO,GAAG,MAAM;IAGpG,mBAAmB,CAAC,aAAa,EAAE,gBAAgB,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;CAG/E;AAED,wBAAgB,wCAAwC,IAAI,QAAQ,CAEnE;AAED,wBAAgB,kCAAkC,IAAI,4BAA4B,CAEjF;AAED,qBAAa,kBAAkB;;IAG3B,qBAAqB,CAAC,CAAC,EAAE,MAAM,GAAG,GAAG;IAGrC,mBAAmB,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,GAAG,KAAK,MAAM,CAAC;CAG/D;AAED,wBAAgB,8BAA8B,IAAI,QAAQ,CAEzD;AAED,wBAAgB,wBAAwB,IAAI,kBAAkB,CAE7D;AAED,qBAAa,sBAAsB;;IAG/B,qBAAqB,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO;IAGzC,mBAAmB,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,MAAM,CAAC;CAGnE;AAED,wBAAgB,kCAAkC,IAAI,QAAQ,CAE7D;AAED,wBAAgB,4BAA4B,IAAI,sBAAsB,CAErE;AAED,qBAAa,qBAAqB;;IAG9B,qBAAqB,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM;IAGxC,mBAAmB,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC;CAGlE;AAED,wBAAgB,iCAAiC,IAAI,QAAQ,CAE5D;AAED,wBAAgB,2BAA2B,IAAI,qBAAqB,CAEnE;AAED,qBAAa,cAAc;;IAGvB,MAAM,KAAK,kBAAkB,IAAI,iCAAiC,CAEjE;IACD,MAAM,KAAK,KAAK,IAAI,oBAAoB,CAEvC;IACD,MAAM,KAAK,KAAK,IAAI,oBAAoB,CAEvC;IACD,MAAM,KAAK,QAAQ,IAAI,uBAAuB,CAE7C;IACD,MAAM,KAAK,GAAG,IAAI,kBAAkB,CAEnC;IACD,MAAM,KAAK,aAAa,IAAI,4BAA4B,CAEvD;IACD,MAAM,KAAK,GAAG,IAAI,kBAAkB,CAEnC;IACD,MAAM,KAAK,OAAO,IAAI,sBAAsB,CAE3C;IACD,MAAM,KAAK,MAAM,IAAI,qBAAqB,CAEzC;CACJ;AAED,wBAAgB,0BAA0B,IAAI,QAAQ,CAErD"}

package/dist/ts/ts/Json.js

@@ -2,6 +2,8 @@ import { ARCtrl_OntologyAnnotation__OntologyAnnotation_fromJsonString_Static_Z72
 import { unwrap } from '../node_modules/@fable-org/fable-library-js/Option.js';
 import { ARCtrl_ArcAssay__ArcAssay_fromJsonString_Static_Z721C83C5, ARCtrl_ArcAssay__ArcAssay_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcAssay__ArcAssay_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcAssay__ArcAssay_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ArcAssay__ArcAssay_toJsonString_Static_71136F3F, ARCtrl_ArcAssay__ArcAssay_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcAssay__ArcAssay_toISAJsonString_Static_Z3B036AA, ARCtrl_ArcAssay__ArcAssay_toROCrateJsonString_Static_5CABCA47 } from './JsonIO/Assay.js';
 import { ARCtrl_ArcStudy__ArcStudy_fromJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_toJsonString_Static_71136F3F, ARCtrl_ArcStudy__ArcStudy_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcStudy__ArcStudy_toISAJsonString_Static_Z3FD920F1, ARCtrl_ArcStudy__ArcStudy_toROCrateJsonString_Static_3BA23086 } from './JsonIO/Study.js';
+import { ARCtrl_ArcWorkflow__ArcWorkflow_fromJsonString_Static_Z721C83C5, ARCtrl_ArcWorkflow__ArcWorkflow_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcWorkflow__ArcWorkflow_toJsonString_Static_71136F3F, ARCtrl_ArcWorkflow__ArcWorkflow_toCompressedJsonString_Static_71136F3F } from './JsonIO/Workflow.js';
+import { ARCtrl_ArcRun__ArcRun_fromJsonString_Static_Z721C83C5, ARCtrl_ArcRun__ArcRun_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcRun__ArcRun_toJsonString_Static_71136F3F, ARCtrl_ArcRun__ArcRun_toCompressedJsonString_Static_71136F3F } from './JsonIO/Run.js';
 import { ARCtrl_ArcInvestigation__ArcInvestigation_fromJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_toJsonString_Static_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_toISAJsonString_Static_Z3B036AA, ARCtrl_ArcInvestigation__ArcInvestigation_toROCrateJsonString_Static_71136F3F } from './JsonIO/Investigation.js';
 import { ARC } from './ARC.js';
 import { ARCtrl_ROCrate_LDGraph__LDGraph_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F, ARCtrl_ROCrate_LDNode__LDNode_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F } from './JsonIO/LDObject.js';
@@ -84,6 +86,38 @@ class JsonHelper_StudyJson {
     return ARCtrl_ArcStudy__ArcStudy_toROCrateJsonString_Static_3BA23086(unwrap(assays), unwrap(spaces))(study);
   }
 }
+class JsonHelper_WorkflowJson {
+  constructor() {
+  }
+  fromJsonString(s) {
+    return ARCtrl_ArcWorkflow__ArcWorkflow_fromJsonString_Static_Z721C83C5(s);
+  }
+  fromCompressedJsonString(s) {
+    return ARCtrl_ArcWorkflow__ArcWorkflow_fromCompressedJsonString_Static_Z721C83C5(s);
+  }
+  toJsonString(workflow, spaces) {
+    return ARCtrl_ArcWorkflow__ArcWorkflow_toJsonString_Static_71136F3F(unwrap(spaces))(workflow);
+  }
+  toCompressedJsonString(workflow, spaces) {
+    return ARCtrl_ArcWorkflow__ArcWorkflow_toCompressedJsonString_Static_71136F3F(unwrap(spaces))(workflow);
+  }
+}
+class JsonHelper_RunJson {
+  constructor() {
+  }
+  fromJsonString(s) {
+    return ARCtrl_ArcRun__ArcRun_fromJsonString_Static_Z721C83C5(s);
+  }
+  fromCompressedJsonString(s) {
+    return ARCtrl_ArcRun__ArcRun_fromCompressedJsonString_Static_Z721C83C5(s);
+  }
+  toJsonString(run, spaces) {
+    return ARCtrl_ArcRun__ArcRun_toJsonString_Static_71136F3F(unwrap(spaces))(run);
+  }
+  toCompressedJsonString(run, spaces) {
+    return ARCtrl_ArcRun__ArcRun_toCompressedJsonString_Static_71136F3F(unwrap(spaces))(run);
+  }
+}
 class JsonHelper_InvestigationJson {
   constructor() {
   }
@@ -154,6 +188,12 @@ class JsonController {
   static get Study() {
     return new JsonHelper_StudyJson();
   }
+  static get Workflow() {
+    return new JsonHelper_WorkflowJson();
+  }
+  static get Run() {
+    return new JsonHelper_RunJson();
+  }
   static get Investigation() {
     return new JsonHelper_InvestigationJson();
   }
@@ -168,4 +208,4 @@ class JsonController {
   }
 }
 
-export { JsonController, JsonHelper_ARCJson, JsonHelper_AssayJson, JsonHelper_InvestigationJson, JsonHelper_LDGraphJson, JsonHelper_LDNodeJson, JsonHelper_OntologyAnnotationJson, JsonHelper_StudyJson };
+export { JsonController, JsonHelper_ARCJson, JsonHelper_AssayJson, JsonHelper_InvestigationJson, JsonHelper_LDGraphJson, JsonHelper_LDNodeJson, JsonHelper_OntologyAnnotationJson, JsonHelper_RunJson, JsonHelper_StudyJson, JsonHelper_WorkflowJson };

package/dist/ts/ts/JsonIO/Run.d.ts

@@ -0,0 +1,10 @@
+import { ArcRun } from '../Core/ArcTypes.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+export declare function ARCtrl_ArcRun__ArcRun_fromJsonString_Static_Z721C83C5(s: string): ArcRun;
+export declare function ARCtrl_ArcRun__ArcRun_toJsonString_Static_71136F3F(spaces?: int32): ((arg0: ArcRun) => string);
+export declare function ARCtrl_ArcRun__ArcRun_ToJsonString_71136F3F(this$: ArcRun, spaces: Option<int32>): string;
+export declare function ARCtrl_ArcRun__ArcRun_fromCompressedJsonString_Static_Z721C83C5(s: string): ArcRun;
+export declare function ARCtrl_ArcRun__ArcRun_toCompressedJsonString_Static_71136F3F(spaces?: int32): ((arg0: ArcRun) => string);
+export declare function ARCtrl_ArcRun__ArcRun_ToCompressedJsonString_71136F3F(this$: ArcRun, spaces: Option<int32>): string;
+//# sourceMappingURL=Run.d.ts.map

package/dist/ts/ts/JsonIO/Run.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Run.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/JsonIO/Run.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAM7C,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAc,MAAM,EAAU,MAAM,uCAAuC,CAAC;AAMnF,wBAAgB,qDAAqD,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CASvF;AAED,wBAAgB,kDAAkD,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,CAK7G;AAED,wBAAgB,2CAA2C,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAExG;AAED,wBAAgB,+DAA+D,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAejG;AAED,wBAAgB,4DAA4D,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,CAEvH;AAED,wBAAgB,qDAAqD,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAElH"}

package/dist/ts/ts/JsonIO/Run.js

@@ -0,0 +1,44 @@
+import { fromString } from '../fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js';
+import { decoder, decoderCompressed, encoder, encoderCompressed } from '../Json/Run.js';
+import { toText, printf, toFail } from '../../node_modules/@fable-org/fable-library-js/String.js';
+import { toString } from '../fable_modules/Thoth.Json.JavaScript.0.4.1/Encode.fs.js';
+import { defaultSpaces } from '../Json/Encode.js';
+import { defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { decode, encode } from './Table/Compression.js';
+
+function ARCtrl_ArcRun__ArcRun_fromJsonString_Static_Z721C83C5(s) {
+  let arg;
+  const matchValue = fromString(decoder, s);
+  if (matchValue.tag === /* Error */
+  1) {
+    throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+  } else {
+    return matchValue.fields[0];
+  }
+}
+function ARCtrl_ArcRun__ArcRun_toJsonString_Static_71136F3F(spaces) {
+  return (obj) => {
+    const value = encoder(obj);
+    return toString(defaultSpaces(spaces), value);
+  };
+}
+function ARCtrl_ArcRun__ArcRun_fromCompressedJsonString_Static_Z721C83C5(s) {
+  let arg;
+  try {
+    const matchValue = fromString(decode(decoderCompressed), s);
+    if (matchValue.tag === /* Error */
+    1) {
+      throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+    } else {
+      return matchValue.fields[0];
+    }
+  } catch (e_1) {
+    const arg_1 = e_1.message;
+    return toFail(printf("Error. Unable to parse json string to ArcRun: %s"))(arg_1);
+  }
+}
+function ARCtrl_ArcRun__ArcRun_toCompressedJsonString_Static_71136F3F(spaces) {
+  return (obj) => toString(defaultArg(spaces, 0), encode(encoderCompressed, obj));
+}
+
+export { ARCtrl_ArcRun__ArcRun_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcRun__ArcRun_fromJsonString_Static_Z721C83C5, ARCtrl_ArcRun__ArcRun_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcRun__ArcRun_toJsonString_Static_71136F3F };

package/dist/ts/ts/JsonIO/Workflow.d.ts

@@ -0,0 +1,10 @@
+import { ArcWorkflow } from '../Core/ArcTypes.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_fromJsonString_Static_Z721C83C5(s: string): ArcWorkflow;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toJsonString_Static_71136F3F(spaces?: int32): ((arg0: ArcWorkflow) => string);
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToJsonString_71136F3F(this$: ArcWorkflow, spaces: Option<int32>): string;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_fromCompressedJsonString_Static_Z721C83C5(s: string): ArcWorkflow;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toCompressedJsonString_Static_71136F3F(spaces?: int32): ((arg0: ArcWorkflow) => string);
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToCompressedJsonString_71136F3F(this$: ArcWorkflow, spaces: Option<int32>): string;
+//# sourceMappingURL=Workflow.d.ts.map

package/dist/ts/ts/JsonIO/Workflow.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Workflow.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/JsonIO/Workflow.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAMlD,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAc,MAAM,EAAU,MAAM,uCAAuC,CAAC;AAMnF,wBAAgB,+DAA+D,CAAC,CAAC,EAAE,MAAM,GAAG,WAAW,CAStG;AAED,wBAAgB,4DAA4D,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,MAAM,CAAC,CAK5H;AAED,wBAAgB,qDAAqD,CAAC,KAAK,EAAE,WAAW,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAEvH;AAED,wBAAgB,yEAAyE,CAAC,CAAC,EAAE,MAAM,GAAG,WAAW,CAehH;AAED,wBAAgB,sEAAsE,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,WAAW,KAAK,MAAM,CAAC,CAEtI;AAED,wBAAgB,+DAA+D,CAAC,KAAK,EAAE,WAAW,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAEjI"}

package/dist/ts/ts/JsonIO/Workflow.js

@@ -0,0 +1,44 @@
+import { fromString } from '../fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js';
+import { decoder, decoderCompressed, encoder, encoderCompressed } from '../Json/Workflow.js';
+import { toText, printf, toFail } from '../../node_modules/@fable-org/fable-library-js/String.js';
+import { toString } from '../fable_modules/Thoth.Json.JavaScript.0.4.1/Encode.fs.js';
+import { defaultSpaces } from '../Json/Encode.js';
+import { defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { decode, encode } from './Table/Compression.js';
+
+function ARCtrl_ArcWorkflow__ArcWorkflow_fromJsonString_Static_Z721C83C5(s) {
+  let arg;
+  const matchValue = fromString(decoder, s);
+  if (matchValue.tag === /* Error */
+  1) {
+    throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+  } else {
+    return matchValue.fields[0];
+  }
+}
+function ARCtrl_ArcWorkflow__ArcWorkflow_toJsonString_Static_71136F3F(spaces) {
+  return (obj) => {
+    const value = encoder(obj);
+    return toString(defaultSpaces(spaces), value);
+  };
+}
+function ARCtrl_ArcWorkflow__ArcWorkflow_fromCompressedJsonString_Static_Z721C83C5(s) {
+  let arg;
+  try {
+    const matchValue = fromString(decode(decoderCompressed), s);
+    if (matchValue.tag === /* Error */
+    1) {
+      throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+    } else {
+      return matchValue.fields[0];
+    }
+  } catch (e_1) {
+    const arg_1 = e_1.message;
+    return toFail(printf("Error. Unable to parse json string to ArcAssay: %s"))(arg_1);
+  }
+}
+function ARCtrl_ArcWorkflow__ArcWorkflow_toCompressedJsonString_Static_71136F3F(spaces) {
+  return (obj) => toString(defaultArg(spaces, 0), encode(encoderCompressed, obj));
+}
+
+export { ARCtrl_ArcWorkflow__ArcWorkflow_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcWorkflow__ArcWorkflow_fromJsonString_Static_Z721C83C5, ARCtrl_ArcWorkflow__ArcWorkflow_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcWorkflow__ArcWorkflow_toJsonString_Static_71136F3F };

package/dist/ts/ts/Xlsx.d.ts

@@ -1,7 +1,7 @@
 import { FsWorkbook } from './fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
 import { DataMap } from './Core/DataMap.js';
 import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
-import { ArcInvestigation, ArcStudy, ArcAssay } from './Core/ArcTypes.js';
+import { ArcInvestigation, ArcRun, ArcWorkflow, ArcStudy, ArcAssay } from './Core/ArcTypes.js';
 import { FSharpList } from '@fable-org/fable-library-js/List.js';
 export declare class XlsxHelper_DatamapXlsx {
     constructor();
@@ -30,6 +30,24 @@ export declare class XlsxHelper_StudyXlsx {
 }
 export declare function XlsxHelper_StudyXlsx_$reflection(): TypeInfo;
 export declare function XlsxHelper_StudyXlsx_$ctor(): XlsxHelper_StudyXlsx;
+export declare class XlsxHelper_WorkflowXlsx {
+    constructor();
+    fromFsWorkbook(fswb: FsWorkbook): ArcWorkflow;
+    toFsWorkbook(workflow: ArcWorkflow): FsWorkbook;
+    fromXlsxFileAsync(path: string): Promise<ArcWorkflow>;
+    toXlsxFileAsync(path: string, workflow: ArcWorkflow): Promise<void>;
+}
+export declare function XlsxHelper_WorkflowXlsx_$reflection(): TypeInfo;
+export declare function XlsxHelper_WorkflowXlsx_$ctor(): XlsxHelper_WorkflowXlsx;
+export declare class XlsxHelper_RunXlsx {
+    constructor();
+    fromFsWorkbook(fswb: FsWorkbook): ArcRun;
+    toFsWorkbook(run: ArcRun): FsWorkbook;
+    fromXlsxFileAsync(path: string): Promise<ArcRun>;
+    toXlsxFileAsync(path: string, run: ArcRun): Promise<void>;
+}
+export declare function XlsxHelper_RunXlsx_$reflection(): TypeInfo;
+export declare function XlsxHelper_RunXlsx_$ctor(): XlsxHelper_RunXlsx;
 export declare class XlsxHelper_InvestigationXlsx {
     constructor();
     fromFsWorkbook(fswb: FsWorkbook): ArcInvestigation;
@@ -44,6 +62,8 @@ export declare class XlsxController {
     static get Datamap(): XlsxHelper_DatamapXlsx;
     static get Assay(): XlsxHelper_AssayXlsx;
     static get Study(): XlsxHelper_StudyXlsx;
+    static get Workflow(): XlsxHelper_WorkflowXlsx;
+    static get Run(): XlsxHelper_RunXlsx;
     static get Investigation(): XlsxHelper_InvestigationXlsx;
 }
 export declare function XlsxController_$reflection(): TypeInfo;

package/dist/ts/ts/Xlsx.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Xlsx.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/Xlsx.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,UAAU,EAAE,MAAM,8DAA8D,CAAC;AAC1F,OAAO,EAAE,OAAO,EAAE,MAAM,mBAAmB,CAAC;AAG5C,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,OAAO,EAAE,gBAAgB,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAE1E,OAAO,EAAS,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAIxE,qBAAa,sBAAsB;;IAG/B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,OAAO;IAGzC,YAAY,CAAC,OAAO,EAAE,OAAO,GAAG,UAAU;IAG1C,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAGjD,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC;CAGjE;AAED,wBAAgB,kCAAkC,IAAI,QAAQ,CAE7D;AAED,wBAAgB,4BAA4B,IAAI,sBAAsB,CAErE;AAED,qBAAa,oBAAoB;;IAG7B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,QAAQ;IAG1C,YAAY,CAAC,KAAK,EAAE,QAAQ,GAAG,UAAU;IAGzC,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC;IAGlD,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC;CAGhE;AAED,wBAAgB,gCAAgC,IAAI,QAAQ,CAE3D;AAED,wBAAgB,0BAA0B,IAAI,oBAAoB,CAEjE;AAED,qBAAa,oBAAoB;;IAG7B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC;IAGlE,YAAY,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,QAAQ,EAAE,GAAG,UAAU;IAG9D,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC;IAG1E,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC;CAGrF;AAED,wBAAgB,gCAAgC,IAAI,QAAQ,CAE3D;AAED,wBAAgB,0BAA0B,IAAI,oBAAoB,CAEjE;AAED,qBAAa,4BAA4B;;IAGrC,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,gBAAgB;IAGlD,YAAY,CAAC,aAAa,EAAE,gBAAgB,GAAG,UAAU;IAGzD,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAG1D,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,aAAa,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC;CAGhF;AAED,wBAAgB,wCAAwC,IAAI,QAAQ,CAEnE;AAED,wBAAgB,kCAAkC,IAAI,4BAA4B,CAEjF;AAED,qBAAa,cAAc;;IAGvB,MAAM,KAAK,OAAO,IAAI,sBAAsB,CAE3C;IACD,MAAM,KAAK,KAAK,IAAI,oBAAoB,CAEvC;IACD,MAAM,KAAK,KAAK,IAAI,oBAAoB,CAEvC;IACD,MAAM,KAAK,aAAa,IAAI,4BAA4B,CAEvD;CACJ;AAED,wBAAgB,0BAA0B,IAAI,QAAQ,CAErD"}
+{"version":3,"file":"Xlsx.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/Xlsx.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,UAAU,EAAE,MAAM,8DAA8D,CAAC;AAC1F,OAAO,EAAE,OAAO,EAAE,MAAM,mBAAmB,CAAC;AAG5C,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAEjF,OAAO,EAAE,gBAAgB,EAAE,MAAM,EAAE,WAAW,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAE/F,OAAO,EAAS,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAMxE,qBAAa,sBAAsB;;IAG/B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,OAAO;IAGzC,YAAY,CAAC,OAAO,EAAE,OAAO,GAAG,UAAU;IAG1C,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAGjD,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,GAAG,OAAO,CAAC,IAAI,CAAC;CAGjE;AAED,wBAAgB,kCAAkC,IAAI,QAAQ,CAE7D;AAED,wBAAgB,4BAA4B,IAAI,sBAAsB,CAErE;AAED,qBAAa,oBAAoB;;IAG7B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,QAAQ;IAG1C,YAAY,CAAC,KAAK,EAAE,QAAQ,GAAG,UAAU;IAGzC,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC;IAGlD,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC;CAGhE;AAED,wBAAgB,gCAAgC,IAAI,QAAQ,CAE3D;AAED,wBAAgB,0BAA0B,IAAI,oBAAoB,CAEjE;AAED,qBAAa,oBAAoB;;IAG7B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC;IAGlE,YAAY,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,QAAQ,EAAE,GAAG,UAAU;IAG9D,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC;IAG1E,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,MAAM,CAAC,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC;CAGrF;AAED,wBAAgB,gCAAgC,IAAI,QAAQ,CAE3D;AAED,wBAAgB,0BAA0B,IAAI,oBAAoB,CAEjE;AAED,qBAAa,uBAAuB;;IAGhC,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,WAAW;IAG7C,YAAY,CAAC,QAAQ,EAAE,WAAW,GAAG,UAAU;IAG/C,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,WAAW,CAAC;IAGrD,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC;CAGtE;AAED,wBAAgB,mCAAmC,IAAI,QAAQ,CAE9D;AAED,wBAAgB,6BAA6B,IAAI,uBAAuB,CAEvE;AAED,qBAAa,kBAAkB;;IAG3B,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,MAAM;IAGxC,YAAY,CAAC,GAAG,EAAE,MAAM,GAAG,UAAU;IAGrC,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAGhD,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;CAG5D;AAED,wBAAgB,8BAA8B,IAAI,QAAQ,CAEzD;AAED,wBAAgB,wBAAwB,IAAI,kBAAkB,CAE7D;AAED,qBAAa,4BAA4B;;IAGrC,cAAc,CAAC,IAAI,EAAE,UAAU,GAAG,gBAAgB;IAGlD,YAAY,CAAC,aAAa,EAAE,gBAAgB,GAAG,UAAU;IAGzD,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAG1D,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,aAAa,EAAE,gBAAgB,GAAG,OAAO,CAAC,IAAI,CAAC;CAGhF;AAED,wBAAgB,wCAAwC,IAAI,QAAQ,CAEnE;AAED,wBAAgB,kCAAkC,IAAI,4BAA4B,CAEjF;AAED,qBAAa,cAAc;;IAGvB,MAAM,KAAK,OAAO,IAAI,sBAAsB,CAE3C;IACD,MAAM,KAAK,KAAK,IAAI,oBAAoB,CAEvC;IACD,MAAM,KAAK,KAAK,IAAI,oBAAoB,CAEvC;IACD,MAAM,KAAK,QAAQ,IAAI,uBAAuB,CAE7C;IACD,MAAM,KAAK,GAAG,IAAI,kBAAkB,CAEnC;IACD,MAAM,KAAK,aAAa,IAAI,4BAA4B,CAEvD;CACJ;AAED,wBAAgB,0BAA0B,IAAI,QAAQ,CAErD"}

package/dist/ts/ts/Xlsx.js

@@ -5,6 +5,8 @@ import { ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcAss
 import { ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522 } from './Spreadsheet/ArcStudy.js';
 import { ofSeq } from '../node_modules/@fable-org/fable-library-js/List.js';
 import { unwrap, map as map$1 } from '../node_modules/@fable-org/fable-library-js/Option.js';
+import { ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E } from './Spreadsheet/ArcWorkflow.js';
+import { ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8 } from './Spreadsheet/ArcRun.js';
 import { ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF } from './Spreadsheet/ArcInvestigation.js';
 
 class XlsxHelper_DatamapXlsx {
@@ -55,6 +57,38 @@ class XlsxHelper_StudyXlsx {
     return FsSpreadsheet_FsWorkbook__FsWorkbook_toXlsxFile_Static(path, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(study, unwrap(map$1(ofSeq, assays))));
   }
 }
+class XlsxHelper_WorkflowXlsx {
+  constructor() {
+  }
+  fromFsWorkbook(fswb) {
+    return ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D(fswb);
+  }
+  toFsWorkbook(workflow) {
+    return ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(workflow);
+  }
+  fromXlsxFileAsync(path) {
+    return map(ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D, FsSpreadsheet_FsWorkbook__FsWorkbook_fromXlsxFile_Static_Z721C83C5(path));
+  }
+  toXlsxFileAsync(path, workflow) {
+    return FsSpreadsheet_FsWorkbook__FsWorkbook_toXlsxFile_Static(path, ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(workflow));
+  }
+}
+class XlsxHelper_RunXlsx {
+  constructor() {
+  }
+  fromFsWorkbook(fswb) {
+    return ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D(fswb);
+  }
+  toFsWorkbook(run) {
+    return ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(run);
+  }
+  fromXlsxFileAsync(path) {
+    return map(ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D, FsSpreadsheet_FsWorkbook__FsWorkbook_fromXlsxFile_Static_Z721C83C5(path));
+  }
+  toXlsxFileAsync(path, run) {
+    return FsSpreadsheet_FsWorkbook__FsWorkbook_toXlsxFile_Static(path, ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(run));
+  }
+}
 class XlsxHelper_InvestigationXlsx {
   constructor() {
   }
@@ -83,9 +117,15 @@ class XlsxController {
   static get Study() {
     return new XlsxHelper_StudyXlsx();
   }
+  static get Workflow() {
+    return new XlsxHelper_WorkflowXlsx();
+  }
+  static get Run() {
+    return new XlsxHelper_RunXlsx();
+  }
   static get Investigation() {
     return new XlsxHelper_InvestigationXlsx();
   }
 }
 
-export { XlsxController, XlsxHelper_AssayXlsx, XlsxHelper_DatamapXlsx, XlsxHelper_InvestigationXlsx, XlsxHelper_StudyXlsx };
+export { XlsxController, XlsxHelper_AssayXlsx, XlsxHelper_DatamapXlsx, XlsxHelper_InvestigationXlsx, XlsxHelper_RunXlsx, XlsxHelper_StudyXlsx, XlsxHelper_WorkflowXlsx };

package/package.json

@@ -1,7 +1,7 @@
 {
   "type": "module",
   "name": "@nfdi4plants/arctrl",
-  "version": "3.0.0-beta.4",
+  "version": "3.0.0-beta.5",
   "description": "Top level ARC DataModel and API function descriptions.",
   "repository": {
     "type": "git",