npm - @nfdi4plants/arctrl - Versions diffs - 3.0.0-beta.15 → 3.0.0-beta.16 - Mend

@nfdi4plants/arctrl 3.0.0-beta.15 → 3.0.0-beta.16

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (63) hide show

package/dist/ts/ts/Conversion.js CHANGED Viewed

@@ -3,7 +3,7 @@ import { unwrap } from '../node_modules/@fable-org/fable-library-js/Option.js';
 import { StudyConversion_composeStudy_ZFE0E38E, StudyConversion_decomposeStudy_Z6839B9E8 } from './Conversion/Study.js';
 import { WorkflowConversion_composeWorkflow_42450E6E, WorkflowConversion_decomposeWorkflow_Z6839B9E8 } from './Conversion/Workflow.js';
 import { RunConversion_composeRun_Z8CC08AC, RunConversion_decomposeRun_Z6839B9E8 } from './Conversion/Run.js';
-import { InvestigationConversion_composeInvestigation_5AEC717D, InvestigationConversion_decomposeInvestigation_Z6839B9E8 } from './Conversion/Investigation.js';
+import { InvestigationConversion_composeInvestigation_Z284BC0AC, InvestigationConversion_decomposeInvestigation_Z6839B9E8 } from './Conversion/Investigation.js';
 import { class_type } from '../node_modules/@fable-org/fable-library-js/Reflection.js';
 function ARCtrl_ArcAssay__ArcAssay_ToROCrateAssay_1695DD5C(this$, fs) {
@@ -30,8 +30,8 @@ function ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C(this$, fs) {
 function ARCtrl_ArcRun__ArcRun_fromROCrateRun_Static_Z6839B9E8(a, graph, context) {
   return RunConversion_decomposeRun_Z6839B9E8(a, unwrap(graph), unwrap(context));
 }
-function ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_1695DD5C(this$, fs) {
-  return InvestigationConversion_composeInvestigation_5AEC717D(this$, unwrap(fs));
+function ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B(this$, fs, ignoreBrokenWR) {
+  return InvestigationConversion_composeInvestigation_Z284BC0AC(this$, unwrap(fs), unwrap(ignoreBrokenWR));
 }
 function ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a, graph, context) {
   return InvestigationConversion_decomposeInvestigation_Z6839B9E8(a, unwrap(graph), unwrap(context));
@@ -64,7 +64,7 @@ function ARCtrl_ROCrate_Dataset__Dataset_toArcInvestigation_Static_Z6839B9E8(a,
   return InvestigationConversion_decomposeInvestigation_Z6839B9E8(a, unwrap(graph), unwrap(context));
 }
 function ARCtrl_ROCrate_Dataset__Dataset_fromArcInvestigation_Static_Z720BD3FF(a) {
-  return InvestigationConversion_composeInvestigation_5AEC717D(a);
+  return InvestigationConversion_composeInvestigation_Z284BC0AC(a);
 }
 class Conversion {
   constructor() {
@@ -93,8 +93,8 @@ class Conversion {
   static datasetToArcRun(a, graph, context) {
     return ARCtrl_ArcRun__ArcRun_fromROCrateRun_Static_Z6839B9E8(a, unwrap(graph), unwrap(context));
   }
-  static arcInvestigationToDataset(a, fs) {
-    return ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_1695DD5C(a, unwrap(fs));
+  static arcInvestigationToDataset(a, fs, ignoreBrokenWR) {
+    return ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B(a, unwrap(fs), unwrap(ignoreBrokenWR));
   }
   static datasetToArcInvestigation(a, graph, context) {
     return ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a, unwrap(graph), unwrap(context));
@@ -104,4 +104,4 @@ function Conversion_$reflection() {
   return class_type("ARCtrl.Conversion.TypeExtensions.Conversion", void 0, Conversion);
 }
-export { ARCtrl_ArcAssay__ArcAssay_ToROCrateAssay_1695DD5C, ARCtrl_ArcAssay__ArcAssay_fromROCrateAssay_Static_Z6839B9E8, ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_1695DD5C, ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8, ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C, ARCtrl_ArcRun__ArcRun_fromROCrateRun_Static_Z6839B9E8, ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy_1695DD5C, ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8, ARCtrl_ArcWorkflow__ArcWorkflow_ToROCrateWorkflow_1695DD5C, ARCtrl_ArcWorkflow__ArcWorkflow_fromROCrateWorkflow_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_fromArcAssay_Static_1501C0F8, ARCtrl_ROCrate_Dataset__Dataset_fromArcInvestigation_Static_Z720BD3FF, ARCtrl_ROCrate_Dataset__Dataset_fromArcRun_Static_Z3EFAF6F8, ARCtrl_ROCrate_Dataset__Dataset_fromArcStudy_Static_1680536E, ARCtrl_ROCrate_Dataset__Dataset_fromArcWorkflow_Static_Z1C75CB0E, ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_toArcInvestigation_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_toArcRun_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_toArcStudy_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_toArcWorkflow_Static_Z6839B9E8, Conversion, Conversion_$reflection };
+export { ARCtrl_ArcAssay__ArcAssay_ToROCrateAssay_1695DD5C, ARCtrl_ArcAssay__ArcAssay_fromROCrateAssay_Static_Z6839B9E8, ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B, ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8, ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C, ARCtrl_ArcRun__ArcRun_fromROCrateRun_Static_Z6839B9E8, ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy_1695DD5C, ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8, ARCtrl_ArcWorkflow__ArcWorkflow_ToROCrateWorkflow_1695DD5C, ARCtrl_ArcWorkflow__ArcWorkflow_fromROCrateWorkflow_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_fromArcAssay_Static_1501C0F8, ARCtrl_ROCrate_Dataset__Dataset_fromArcInvestigation_Static_Z720BD3FF, ARCtrl_ROCrate_Dataset__Dataset_fromArcRun_Static_Z3EFAF6F8, ARCtrl_ROCrate_Dataset__Dataset_fromArcStudy_Static_1680536E, ARCtrl_ROCrate_Dataset__Dataset_fromArcWorkflow_Static_Z1C75CB0E, ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_toArcInvestigation_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_toArcRun_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_toArcStudy_Static_Z6839B9E8, ARCtrl_ROCrate_Dataset__Dataset_toArcWorkflow_Static_Z6839B9E8, Conversion, Conversion_$reflection };

package/dist/ts/ts/Json.d.ts CHANGED Viewed

@@ -85,11 +85,9 @@ export declare class JsonHelper_InvestigationJson {
     fromJsonString(s: string): ArcInvestigation;
     fromCompressedJsonString(s: string): ArcInvestigation;
     fromISAJsonString(s: string): ArcInvestigation;
-    fromROCrateJsonString(s: string): ArcInvestigation;
     toJsonString(investigation: ArcInvestigation, spaces?: int32): string;
     toCompressedJsonString(investigation: ArcInvestigation, spaces?: int32): string;
     toISAJsonString(investigation: ArcInvestigation, spaces?: int32, useIDReferencing?: boolean): string;
-    toROCrateJsonString(investigation: ArcInvestigation, spaces?: int32): string;
 }
 export declare function JsonHelper_InvestigationJson_$reflection(): TypeInfo;
 export declare function JsonHelper_InvestigationJson_$ctor(): JsonHelper_InvestigationJson;

package/dist/ts/ts/Json.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/dist/ts/ts/Json.js CHANGED Viewed

@@ -8,7 +8,7 @@ import { ARCtrl_ArcAssay__ArcAssay_fromJsonString_Static_Z721C83C5, ARCtrl_ArcAs
 import { ARCtrl_ArcStudy__ArcStudy_fromJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ArcStudy__ArcStudy_toJsonString_Static_71136F3F, ARCtrl_ArcStudy__ArcStudy_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcStudy__ArcStudy_toISAJsonString_Static_Z3FD920F1, ARCtrl_ArcStudy__ArcStudy_toROCrateJsonString_Static_3BA23086 } from './JsonIO/Study.js';
 import { ARCtrl_ArcWorkflow__ArcWorkflow_fromJsonString_Static_Z721C83C5, ARCtrl_ArcWorkflow__ArcWorkflow_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcWorkflow__ArcWorkflow_toJsonString_Static_71136F3F, ARCtrl_ArcWorkflow__ArcWorkflow_toCompressedJsonString_Static_71136F3F } from './JsonIO/Workflow.js';
 import { ARCtrl_ArcRun__ArcRun_fromJsonString_Static_Z721C83C5, ARCtrl_ArcRun__ArcRun_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcRun__ArcRun_toJsonString_Static_71136F3F, ARCtrl_ArcRun__ArcRun_toCompressedJsonString_Static_71136F3F } from './JsonIO/Run.js';
-import { ARCtrl_ArcInvestigation__ArcInvestigation_fromJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_toJsonString_Static_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_toISAJsonString_Static_Z3B036AA, ARCtrl_ArcInvestigation__ArcInvestigation_toROCrateJsonString_Static_71136F3F } from './JsonIO/Investigation.js';
+import { ARCtrl_ArcInvestigation__ArcInvestigation_fromJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_toJsonString_Static_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_toISAJsonString_Static_Z3B036AA } from './JsonIO/Investigation.js';
 import { ARC } from './ARC.js';
 class JsonHelper_OntologyAnnotationJson {
@@ -207,9 +207,6 @@ class JsonHelper_InvestigationJson {
   fromISAJsonString(s) {
     return ARCtrl_ArcInvestigation__ArcInvestigation_fromISAJsonString_Static_Z721C83C5(s);
   }
-  fromROCrateJsonString(s) {
-    return ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateJsonString_Static_Z721C83C5(s);
-  }
   toJsonString(investigation, spaces) {
     return ARCtrl_ArcInvestigation__ArcInvestigation_toJsonString_Static_71136F3F(unwrap(spaces))(investigation);
   }
@@ -219,9 +216,6 @@ class JsonHelper_InvestigationJson {
   toISAJsonString(investigation, spaces, useIDReferencing) {
     return ARCtrl_ArcInvestigation__ArcInvestigation_toISAJsonString_Static_Z3B036AA(unwrap(spaces), unwrap(useIDReferencing))(investigation);
   }
-  toROCrateJsonString(investigation, spaces) {
-    return ARCtrl_ArcInvestigation__ArcInvestigation_toROCrateJsonString_Static_71136F3F(unwrap(spaces))(investigation);
-  }
 }
 function JsonHelper_InvestigationJson_$reflection() {
   return class_type("ARCtrl.JsonHelper.InvestigationJson", void 0, JsonHelper_InvestigationJson);

package/dist/ts/ts/JsonIO/Investigation.d.ts CHANGED Viewed

@@ -7,12 +7,6 @@ export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToJsonString_7
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_fromCompressedJsonString_Static_Z721C83C5(s: string): ArcInvestigation;
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_toCompressedJsonString_Static_71136F3F(spaces?: int32): ((arg0: ArcInvestigation) => string);
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToCompressedJsonString_71136F3F(this$: ArcInvestigation, spaces: Option<int32>): string;
-export declare function ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateJsonString_Static_Z721C83C5(s: string): ArcInvestigation;
-/**
- * exports in json-ld format
- */
-export declare function ARCtrl_ArcInvestigation__ArcInvestigation_toROCrateJsonString_Static_71136F3F(spaces?: int32): ((arg0: ArcInvestigation) => string);
-export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateJsonString_71136F3F(this$: ArcInvestigation, spaces: Option<int32>): string;
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_toISAJsonString_Static_Z3B036AA(spaces?: int32, useIDReferencing?: boolean): ((arg0: ArcInvestigation) => string);
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_fromISAJsonString_Static_Z721C83C5(s: string): ArcInvestigation;
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToISAJsonString_Z3B036AA(this$: ArcInvestigation, spaces: Option<int32>, useIDReferencing: Option<boolean>): string;

package/dist/ts/ts/JsonIO/Investigation.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"Investigation.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/JsonIO/Investigation.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAMvD,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAc,MAAM,EAAU,MAAM,uCAAuC,CAAC;AAMnF,wBAAgB,yEAAyE,CAAC,CAAC,EAAE,MAAM,GAAG,gBAAgB,CASrH;AAED,wBAAgB,sEAAsE,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,gBAAgB,KAAK,MAAM,CAAC,CAK3I;AAED,wBAAgB,+DAA+D,CAAC,KAAK,EAAE,gBAAgB,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAEtI;AAED,wBAAgB,mFAAmF,CAAC,CAAC,EAAE,MAAM,GAAG,gBAAgB,CAe/H;AAED,wBAAgB,gFAAgF,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,gBAAgB,KAAK,MAAM,CAAC,CAErJ;AAED,wBAAgB,yEAAyE,CAAC,KAAK,EAAE,gBAAgB,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAEhJ;AAED,wBAAgB,gFAAgF,CAAC,CAAC,EAAE,MAAM,GAAG,gBAAgB,CAS5H;AAED;;GAEG;AACH,wBAAgB,6EAA6E,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,gBAAgB,KAAK,MAAM,CAAC,CAKlJ;AAED,wBAAgB,sEAAsE,CAAC,KAAK,EAAE,gBAAgB,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAE7I;AAED,wBAAgB,yEAAyE,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,gBAAgB,CAAC,EAAE,OAAO,GAAG,CAAC,CAAC,IAAI,EAAE,gBAAgB,KAAK,MAAM,CAAC,CAM1K;AAED,wBAAgB,4EAA4E,CAAC,CAAC,EAAE,MAAM,GAAG,gBAAgB,CASxH;AAED,wBAAgB,kEAAkE,CAAC,KAAK,EAAE,gBAAgB,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,EAAE,gBAAgB,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,MAAM,CAE5K"}
1	+ {"version":3,"file":"Investigation.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/JsonIO/Investigation.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAMvD,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAc,MAAM,EAAU,MAAM,uCAAuC,CAAC;AAMnF,wBAAgB,yEAAyE,CAAC,CAAC,EAAE,MAAM,GAAG,gBAAgB,CASrH;AAED,wBAAgB,sEAAsE,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,gBAAgB,KAAK,MAAM,CAAC,CAK3I;AAED,wBAAgB,+DAA+D,CAAC,KAAK,EAAE,gBAAgB,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAEtI;AAED,wBAAgB,mFAAmF,CAAC,CAAC,EAAE,MAAM,GAAG,gBAAgB,CAe/H;AAED,wBAAgB,gFAAgF,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,gBAAgB,KAAK,MAAM,CAAC,CAErJ;AAED,wBAAgB,yEAAyE,CAAC,KAAK,EAAE,gBAAgB,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAEhJ;AAED,wBAAgB,yEAAyE,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,gBAAgB,CAAC,EAAE,OAAO,GAAG,CAAC,CAAC,IAAI,EAAE,gBAAgB,KAAK,MAAM,CAAC,CAM1K;AAED,wBAAgB,4EAA4E,CAAC,CAAC,EAAE,MAAM,GAAG,gBAAgB,CASxH;AAED,wBAAgB,kEAAkE,CAAC,KAAK,EAAE,gBAAgB,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,EAAE,gBAAgB,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,MAAM,CAE5K"}

package/dist/ts/ts/JsonIO/Investigation.js CHANGED Viewed

@@ -1,5 +1,5 @@
 import { fromString } from '../fable_modules/Thoth.Json.JavaScript.0.4.1/Decode.fs.js';
-import { decoder, encoder, decoderCompressed, encoderCompressed, ROCrate_decoder, ROCrate_encoder, ISAJson_encoder, ISAJson_decoder } from '../Json/Investigation.js';
+import { decoder, encoder, decoderCompressed, encoderCompressed, ISAJson_encoder, ISAJson_decoder } from '../Json/Investigation.js';
 import { toText, printf, toFail } from '../../node_modules/@fable-org/fable-library-js/String.js';
 import { toString } from '../fable_modules/Thoth.Json.JavaScript.0.4.1/Encode.fs.js';
 import { defaultSpaces } from '../Json/Encode.js';
@@ -46,25 +46,6 @@ function ARCtrl_ArcInvestigation__ArcInvestigation_toCompressedJsonString_Static
 function ARCtrl_ArcInvestigation__ArcInvestigation_ToCompressedJsonString_71136F3F(this$, spaces) {
   return ARCtrl_ArcInvestigation__ArcInvestigation_toCompressedJsonString_Static_71136F3F(unwrap(spaces))(this$);
 }
-function ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateJsonString_Static_Z721C83C5(s) {
-  let arg;
-  const matchValue = fromString(ROCrate_decoder, s);
-  if (matchValue.tag === /* Error */
-  1) {
-    throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
-  } else {
-    return matchValue.fields[0];
-  }
-}
-function ARCtrl_ArcInvestigation__ArcInvestigation_toROCrateJsonString_Static_71136F3F(spaces) {
-  return (obj) => {
-    const value = ROCrate_encoder(obj);
-    return toString(defaultSpaces(spaces), value);
-  };
-}
-function ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateJsonString_71136F3F(this$, spaces) {
-  return ARCtrl_ArcInvestigation__ArcInvestigation_toROCrateJsonString_Static_71136F3F(unwrap(spaces))(this$);
-}
 function ARCtrl_ArcInvestigation__ArcInvestigation_toISAJsonString_Static_Z3B036AA(spaces, useIDReferencing) {
   const idMap = defaultArg(useIDReferencing, false) ? /* @__PURE__ */ new Map([]) : void 0;
   return (obj) => {
@@ -86,4 +67,4 @@ function ARCtrl_ArcInvestigation__ArcInvestigation_ToISAJsonString_Z3B036AA(this
   return ARCtrl_ArcInvestigation__ArcInvestigation_toISAJsonString_Static_Z3B036AA(unwrap(spaces), unwrap(useIDReferencing))(this$);
 }
-export { ARCtrl_ArcInvestigation__ArcInvestigation_ToCompressedJsonString_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_ToISAJsonString_Z3B036AA, ARCtrl_ArcInvestigation__ArcInvestigation_ToJsonString_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateJsonString_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_toISAJsonString_Static_Z3B036AA, ARCtrl_ArcInvestigation__ArcInvestigation_toJsonString_Static_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_toROCrateJsonString_Static_71136F3F };
+export { ARCtrl_ArcInvestigation__ArcInvestigation_ToCompressedJsonString_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_ToISAJsonString_Z3B036AA, ARCtrl_ArcInvestigation__ArcInvestigation_ToJsonString_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_fromCompressedJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromISAJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_fromJsonString_Static_Z721C83C5, ARCtrl_ArcInvestigation__ArcInvestigation_toCompressedJsonString_Static_71136F3F, ARCtrl_ArcInvestigation__ArcInvestigation_toISAJsonString_Static_Z3B036AA, ARCtrl_ArcInvestigation__ArcInvestigation_toJsonString_Static_71136F3F };

package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.d.ts CHANGED Viewed

@@ -24,14 +24,16 @@ export declare class LDComputationalWorkflow {
     static get comment(): string;
     static getInputs(cw: LDNode, graph?: LDGraph, context?: LDContext): LDNode[];
     static getInputsAsFormalParameters(cw: LDNode, graph?: LDGraph, context?: LDContext): LDNode[];
-    static setInputs<$n>(cw: LDNode, inputs: LDNode[], context?: LDContext): $n;
+    static setInputs<$o>(cw: LDNode, inputs: LDNode[], context?: LDContext): $o;
     static getOutputs(cw: LDNode, graph?: LDGraph, context?: LDContext): LDNode[];
     static getOutputsAsFormalParameter(cw: LDNode, graph?: LDGraph, context?: LDContext): LDNode[];
-    static setOutputs<$m>(cw: LDNode, outputs: LDNode[], context?: LDContext): $m;
-    static getCreator(cw: LDNode, graph?: LDGraph, context?: LDContext): LDNode[];
-    static setCreator<$l>(cw: LDNode, creator: LDNode, context?: LDContext): $l;
+    static setOutputs<$n>(cw: LDNode, outputs: LDNode[], context?: LDContext): $n;
+    static getCreators(cw: LDNode, graph?: LDGraph, context?: LDContext): LDNode[];
+    static setCreators<$m>(cw: LDNode, creators: LDNode[], context?: LDContext): $m;
     static tryGetDateCreated(cw: LDNode, context?: LDContext): Option<string>;
-    static setDateCreated<$k>(cw: LDNode, date: string, context?: LDContext): $k;
+    static tryGetDateCreatedAsDateTime(lp: LDNode, context?: LDContext): Option<Date>;
+    static setDateCreated<$l>(cw: LDNode, date: string, context?: LDContext): $l;
+    static setDateCreatedAsDateTime<$k>(lp: LDNode, dateCreated: Date, context?: LDContext): $k;
     static getLicenses(cw: LDNode, graph?: LDGraph, context?: LDContext): LDNode[];
     static setLicenses<$j>(cw: LDNode, licenses: LDNode[], context?: LDContext): $j;
     static tryGetNameAsString(cw: LDNode, context?: LDContext): Option<string>;

package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.js CHANGED Viewed

@@ -86,7 +86,7 @@ class LDComputationalWorkflow {
   static setOutputs(cw, outputs, context) {
     return cw.SetProperty(LDComputationalWorkflow.output, outputs, unwrap(context));
   }
-  static getCreator(cw, graph, context) {
+  static getCreators(cw, graph, context) {
     return cw.GetPropertyNodes(LDComputationalWorkflow.creator, (ldObject, context_1) => {
       if (LDPerson.validate(ldObject, unwrap(context_1))) {
         return true;
@@ -95,8 +95,8 @@ class LDComputationalWorkflow {
       }
     }, unwrap(graph), unwrap(context));
   }
-  static setCreator(cw, creator, context) {
-    return cw.SetProperty(LDComputationalWorkflow.creator, creator, unwrap(context));
+  static setCreators(cw, creators, context) {
+    return cw.SetProperty(LDComputationalWorkflow.creator, creators, unwrap(context));
   }
   static tryGetDateCreated(cw, context) {
     const matchValue = cw.TryGetPropertyAsSingleton(LDComputationalWorkflow.dateCreated, unwrap(context));
@@ -118,9 +118,32 @@ class LDComputationalWorkflow {
         return void 0;
     }
   }
+  static tryGetDateCreatedAsDateTime(lp, context) {
+    const matchValue = lp.TryGetPropertyAsSingleton(LDComputationalWorkflow.dateCreated, unwrap(context));
+    let matchResult, n;
+    if (matchValue != null) {
+      if (value(matchValue) instanceof Date) {
+        matchResult = 0;
+        n = value(matchValue);
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+    switch (matchResult) {
+      case 0:
+        return n;
+      default:
+        return void 0;
+    }
+  }
   static setDateCreated(cw, date, context) {
     return cw.SetProperty(LDComputationalWorkflow.dateCreated, date, unwrap(context));
   }
+  static setDateCreatedAsDateTime(lp, dateCreated, context) {
+    return lp.SetProperty(LDComputationalWorkflow.dateCreated, dateCreated, unwrap(context));
+  }
   static getLicenses(cw, graph, context) {
     return cw.GetPropertyNodes(LDComputationalWorkflow.license, void 0, unwrap(graph), unwrap(context));
   }

package/dist/ts/ts/ROCrate/LDTypes/Dataset.d.ts CHANGED Viewed

@@ -25,6 +25,7 @@ export declare class LDDataset {
     static get measurementTechnique(): string;
     static get variableMeasured(): string;
     static get mainEntity(): string;
+    static get conformsTo(): string;
     static tryGetIdentifierAsString(lp: LDNode, context?: LDContext): Option<string>;
     static getIdentifierAsString(lp: LDNode, context?: LDContext): string;
     static setIdentifierAsString<$a3>(lp: LDNode, identifier: string, context?: LDContext): $a3;
@@ -80,6 +81,7 @@ export declare class LDDataset {
     static setVariableMeasuredAsPropertyValue<$c>(lp: LDNode, variableMeasured: LDNode, context?: LDContext): $c;
     static setVariableMeasuredAsPropertyValues<$b>(lp: LDNode, variableMeasured: LDNode[], context?: LDContext): $b;
     static getMainEntities(lp: LDNode, graph?: LDGraph, context?: LDContext): LDNode[];
+    static tryGetMainEntityAsWorkflowProtocol(lp: LDNode, graph?: LDGraph, context?: LDContext): Option<LDNode>;
     static setMainEntities<$a>(lp: LDNode, mainEntities: LDNode[], context?: LDContext): $a;
     static genIDInvesigation(): string;
     static genIDStudy(identifier: string): string;
@@ -97,7 +99,7 @@ export declare class LDDataset {
     static createStudy(identifier: string, id?: string, creators?: LDNode[], dateCreated?: Date, datePublished?: Date, dateModified?: Date, description?: string, hasParts?: LDNode[], name?: string, citations?: LDNode[], variableMeasureds?: LDNode[], comments?: LDNode[], url?: string, abouts?: LDNode[], context?: LDContext): LDNode;
     static createAssay(identifier: string, id?: string, name?: string, description?: string, creators?: LDNode[], hasParts?: LDNode[], measurementMethod?: LDNode, measurementTechnique?: LDNode, variableMeasureds?: LDNode[], abouts?: LDNode[], comments?: LDNode[], context?: LDContext): LDNode;
     static createARCWorkflow(identifier: string, mainEntities: LDNode[], id?: string, name?: string, description?: string, creators?: LDNode[], hasParts?: LDNode[], comments?: LDNode[], context?: LDContext): LDNode;
-    static createARCRun(identifier: string, id?: string, name?: string, description?: string, creators?: LDNode[], hasParts?: LDNode[], measurementMethod?: LDNode, measurementTechnique?: LDNode, variableMeasureds?: LDNode[], abouts?: LDNode[], mentions?: LDNode[], comments?: LDNode[], context?: LDContext): LDNode;
+    static createARCRun(identifier: string, mainEntities?: LDNode[], id?: string, name?: string, description?: string, creators?: LDNode[], hasParts?: LDNode[], measurementMethod?: LDNode, measurementTechnique?: LDNode, variableMeasureds?: LDNode[], abouts?: LDNode[], mentions?: LDNode[], comments?: LDNode[], context?: LDContext): LDNode;
 }
 export declare function LDDataset_$reflection(): TypeInfo;
 //# sourceMappingURL=Dataset.d.ts.map

package/dist/ts/ts/ROCrate/LDTypes/Dataset.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/ts/ts/ROCrate/LDTypes/Dataset.js CHANGED Viewed

@@ -1,5 +1,5 @@
-import { unwrap, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
-import { LDNode } from '../LDObject.js';
+import { unwrap, value, toArray } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { LDNode, LDRef } from '../LDObject.js';
 import { LDPerson } from './Person.js';
 import { LDCreativeWork } from './CreativeWork.js';
 import { LDFile } from './File.js';
@@ -10,9 +10,10 @@ import { LDWorkflowInvocation } from './WorkflowInvocation.js';
 import { LDDefinedTerm } from './DefinedTerm.js';
 import { LDPropertyValue } from './PropertyValue.js';
 import { ResizeArray_tryPick } from '../../Core/Helper/Collections.js';
+import { tryFind, iterate } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { LDWorkflowProtocol } from './WorkflowProtocol.js';
 import { contains } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
 import { stringHash } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
-import { LDWorkflowProtocol } from './WorkflowProtocol.js';
 import { class_type } from '../../../node_modules/@fable-org/fable-library-js/Reflection.js';
 class LDDataset {
@@ -81,6 +82,9 @@ class LDDataset {
   static get mainEntity() {
     return "http://schema.org/mainEntity";
   }
+  static get conformsTo() {
+    return "http://purl.org/dc/terms/conformsTo";
+  }
   static tryGetIdentifierAsString(lp, context) {
     const matchValue = lp.TryGetPropertyAsSingleton(LDDataset.identifier, unwrap(context));
     let matchResult, n;
@@ -585,6 +589,9 @@ class LDDataset {
   static getMainEntities(lp, graph, context) {
     return lp.GetPropertyNodes(LDDataset.mainEntity, void 0, unwrap(graph), unwrap(context));
   }
+  static tryGetMainEntityAsWorkflowProtocol(lp, graph, context) {
+    return tryFind((n) => LDWorkflowProtocol.validate(n, unwrap(context)), LDDataset.getMainEntities(lp, unwrap(graph), unwrap(context)));
+  }
   static setMainEntities(lp, mainEntities, context) {
     return lp.SetProperty(LDDataset.mainEntity, mainEntities, unwrap(context));
   }
@@ -681,10 +688,15 @@ class LDDataset {
     s.SetProperty(LDDataset.mainEntity, mainEntities, unwrap(context));
     return s;
   }
-  static createARCRun(identifier, id, name, description, creators, hasParts, measurementMethod, measurementTechnique, variableMeasureds, abouts, mentions, comments, context) {
+  static createARCRun(identifier, mainEntities, id, name, description, creators, hasParts, measurementMethod, measurementTechnique, variableMeasureds, abouts, mentions, comments, context) {
     const id_1 = id == null ? LDDataset.genIDARCRun(identifier) : value(id);
     const s = LDDataset.create(id_1, identifier, unwrap(creators), void 0, void 0, void 0, unwrap(description), unwrap(hasParts), unwrap(name), void 0, unwrap(comments), unwrap(mentions), void 0, unwrap(abouts), unwrap(measurementMethod), unwrap(measurementTechnique), unwrap(variableMeasureds), unwrap(context));
     s.AdditionalType = ["Run"];
+    iterate((me) => {
+      s.SetProperty(LDDataset.mainEntity, me, unwrap(context));
+    }, toArray(mainEntities));
+    const conformsToRefs = [new LDRef("https://w3id.org/ro/wfrun/process/0.5"), new LDRef("https://w3id.org/ro/wfrun/workflow/0.5"), new LDRef("https://w3id.org/workflowhub/workflow-ro-crate/1.0")];
+    s.SetProperty(LDDataset.conformsTo, conformsToRefs, unwrap(context));
     return s;
   }
 }

package/dist/ts/ts/ROCrateIO.d.ts CHANGED Viewed

@@ -1,9 +1,9 @@
 import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
-import { LDNode } from './ROCrate/LDObject.js';
+import { LDGraph, LDNode } from './ROCrate/LDObject.js';
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { License } from './License.js';
 import { LDContext } from './ROCrate/LDContext.js';
-import { ArcInvestigation } from './Core/ArcTypes.js';
+import { ArcWorkflow, ArcRun, ArcInvestigation } from './Core/ArcTypes.js';
 import { FileSystem } from './FileSystem/FileSystem.js';
 import { Decoder$1, IEncodable } from './fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
 export declare class ROCrate {
@@ -11,12 +11,16 @@ export declare class ROCrate {
 }
 export declare function ROCrate_$reflection(): TypeInfo;
 export declare function ROCrate_get_metadataFileDescriptor(): LDNode;
+export declare function ROCrate_get_metadataFileDescriptorWfRun(): LDNode;
 export declare function ROCrate_createLicenseNode_29619109(license: Option<License>): LDNode;
 export declare function ROCrate_getLicense_Z2F770004(license: LDNode, context?: LDContext): Option<License>;
-export declare function ROCrate_encoder_1E8A3F74(isa: ArcInvestigation, license?: License, fs?: FileSystem): IEncodable;
+export declare function ROCrate_encoder_Z7FE34C43(isa: ArcInvestigation, license?: License, fs?: FileSystem, ignoreBrokenWR?: boolean): IEncodable;
 /**
  * Returns ArcInvestigation, list of file Ids, and optional License
  */
 export declare function ROCrate_get_decoder(): Decoder$1<[ArcInvestigation, string[], Option<License>]>;
+export declare function ROCrate_packDatasetAsCrate_Z2DB026F7(dataset: LDNode, datasetName: string, datasetDescription: string, metadataFileDescriptor: Option<LDNode>, license: License): LDGraph;
+export declare function ROCrate_writeRunAsCrate_5E53831D(arcRun: ArcRun, fileSystem: FileSystem, license: License): string;
+export declare function ROCrate_writeWorkflowAsCrate_Z4A0538D9(arcWorkflow: ArcWorkflow, fileSystem: FileSystem, license: License): string;
 export declare function ROCrate_get_decoderDeprecated(): Decoder$1<ArcInvestigation>;
 //# sourceMappingURL=ROCrateIO.d.ts.map

package/dist/ts/ts/ROCrateIO.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"ROCrateIO.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/ROCrateIO.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,~~EAAkB~~,MAAM,EAAE,MAAM,uBAAuB,CAAC;~~AAE/D~~,OAAO,~~EAAgB~~,MAAM,EAAoB,MAAM,uCAAuC,CAAC;~~AAC/F~~,OAAO,EAAsB,OAAO,EAAE,MAAM,cAAc,CAAC;AAE3D,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAMnD,OAAO,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;~~AACtD~~,OAAO,EAAE,UAAU,EAAE,MAAM,4BAA4B,CAAC;AACxD,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,mDAAmD,CAAC;~~AAO1F~~,qBAAa,OAAO;;CAGnB;AAED,wBAAgB,mBAAmB,IAAI,QAAQ,CAE9C;AAED,wBAAgB,kCAAkC,IAAI,MAAM,CAK3D;AAED,wBAAgB,kCAAkC,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,MAAM,CAWnF;AAED,wBAAgB,4BAA4B,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAAC,OAAO,CAAC,CAqClG;AAED,wBAAgB,~~wBAAwB~~,CAAC,GAAG,EAAE,gBAAgB,EAAE,OAAO,CAAC,EAAE,OAAO,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,UAAU,~~CAW9G~~;AAED;;GAEG;AACH,wBAAgB,mBAAmB,IAAI,SAAS,CAAC,CAAC,gBAAgB,EAAE,MAAM,EAAE,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAoB9F;AAED,wBAAgB,6BAA6B,IAAI,SAAS,CAAC,gBAAgB,CAAC,CAE3E"}
1	+ {"version":3,"file":"ROCrateIO.d.ts","sourceRoot":"","sources":["../../../src/ARCtrl/ts/ROCrateIO.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,EAA2D,OAAO,EAAS,MAAM,EAAE,MAAM,uBAAuB,CAAC;AAGxH,OAAO,EAA4B,MAAM,EAAoB,MAAM,uCAAuC,CAAC;AAC3G,OAAO,EAAsB,OAAO,EAAE,MAAM,cAAc,CAAC;AAE3D,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AAMnD,OAAO,EAAE,WAAW,EAAE,MAAM,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAC;AAC3E,OAAO,EAAE,UAAU,EAAE,MAAM,4BAA4B,CAAC;AACxD,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,mDAAmD,CAAC;AAW1F,qBAAa,OAAO;;CAGnB;AAED,wBAAgB,mBAAmB,IAAI,QAAQ,CAE9C;AAED,wBAAgB,kCAAkC,IAAI,MAAM,CAK3D;AAED,wBAAgB,uCAAuC,IAAI,MAAM,CAKhE;AAED,wBAAgB,kCAAkC,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,MAAM,CAWnF;AAED,wBAAgB,4BAA4B,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAAC,OAAO,CAAC,CAqClG;AAED,wBAAgB,yBAAyB,CAAC,GAAG,EAAE,gBAAgB,EAAE,OAAO,CAAC,EAAE,OAAO,EAAE,EAAE,CAAC,EAAE,UAAU,EAAE,cAAc,CAAC,EAAE,OAAO,GAAG,UAAU,CAWzI;AAED;;GAEG;AACH,wBAAgB,mBAAmB,IAAI,SAAS,CAAC,CAAC,gBAAgB,EAAE,MAAM,EAAE,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAoB9F;AAED,wBAAgB,oCAAoC,CAAC,OAAO,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,EAAE,sBAAsB,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,OAAO,GAAG,OAAO,CAexL;AAED,wBAAgB,gCAAgC,CAAC,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,OAAO,EAAE,OAAO,GAAG,MAAM,CAqBjH;AAED,wBAAgB,sCAAsC,CAAC,WAAW,EAAE,WAAW,EAAE,UAAU,EAAE,UAAU,EAAE,OAAO,EAAE,OAAO,GAAG,MAAM,CAqBjI;AAED,wBAAgB,6BAA6B,IAAI,SAAS,CAAC,gBAAgB,CAAC,CAE3E"}

package/dist/ts/ts/ROCrateIO.js CHANGED Viewed

@@ -1,10 +1,11 @@
 import { class_type } from '../node_modules/@fable-org/fable-library-js/Reflection.js';
-import { LDNode, LDRef } from './ROCrate/LDObject.js';
+import { LDNode, LDRef, DynamicObj_DynamicObj__DynamicObj_HasProperty_Z721C83C5 } from './ROCrate/LDObject.js';
+import { ofArray, filter, isEmpty, map as map$1 } from '../node_modules/@fable-org/fable-library-js/List.js';
 import { LDCreativeWork } from './ROCrate/LDTypes/CreativeWork.js';
-import { value, unwrap, bind } from '../node_modules/@fable-org/fable-library-js/Option.js';
+import { value, unwrap, bind, defaultArg } from '../node_modules/@fable-org/fable-library-js/Option.js';
 import { License } from './License.js';
 import { LDContext } from './ROCrate/LDContext.js';
-import { ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_1695DD5C, ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8 } from './Conversion.js';
+import { ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B, ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8, ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C, ARCtrl_ArcWorkflow__ArcWorkflow_ToROCrateWorkflow_1695DD5C } from './Conversion.js';
 import { LDDataset } from './ROCrate/LDTypes/Dataset.js';
 import { now } from '../node_modules/@fable-org/fable-library-js/Date.js';
 import { initV1_2, initBioschemasContext, initV1_1 } from './ROCrate/ROCrateContext.js';
@@ -12,7 +13,11 @@ import { encoder, decoder } from './Json/ROCrate/LDGraph.js';
 import { map } from './fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
 import { ResizeArray_choose } from './Core/Helper/Collections.js';
 import { LDFile } from './ROCrate/LDTypes/File.js';
-import { exactlyOne } from '../node_modules/@fable-org/fable-library-js/Seq.js';
+import { iterate, tryHead, exactlyOne } from '../node_modules/@fable-org/fable-library-js/Seq.js';
+import { join, replace, toFail, printf } from '../node_modules/@fable-org/fable-library-js/String.js';
+import { LDCreateAction } from './ROCrate/LDTypes/CreateAction.js';
+import { ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F } from './JsonIO/LDObject.js';
+import { LDComputationalWorkflow } from './ROCrate/LDTypes/ComputationalWorkflow.js';
 import { decoder as decoder$1 } from './Json/ROCrate/LDNode.js';
 class ROCrate {
@@ -28,6 +33,12 @@ function ROCrate_get_metadataFileDescriptor() {
   node.SetProperty("http://schema.org/about", new LDRef("./"));
   return node;
 }
+function ROCrate_get_metadataFileDescriptorWfRun() {
+  const node = new LDNode("ro-crate-metadata.json", ["http://schema.org/CreativeWork"]);
+  node.SetProperty("http://purl.org/dc/terms/conformsTo", ofArray([new LDRef("https://w3id.org/ro/crate/1.1"), new LDRef("https://w3id.org/workflowhub/workflow-ro-crate/1.0")]));
+  node.SetProperty("http://schema.org/about", new LDRef("./"));
+  return node;
+}
 function ROCrate_createLicenseNode_29619109(license) {
   if (license == null) {
     return LDCreativeWork.create("#LICENSE", void 0, void 0, void 0, void 0, void 0, void 0, void 0, void 0, "ALL RIGHTS RESERVED BY THE AUTHORS");
@@ -73,9 +84,9 @@ function ROCrate_getLicense_Z2F770004(license, context) {
       return new License("fulltext", "", path_1);
   }
 }
-function ROCrate_encoder_1E8A3F74(isa, license, fs) {
+function ROCrate_encoder_Z7FE34C43(isa, license, fs, ignoreBrokenWR) {
   const license_1 = ROCrate_createLicenseNode_29619109(license);
-  const isa_1 = ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_1695DD5C(isa, unwrap(fs));
+  const isa_1 = ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_Z7960E96B(isa, unwrap(fs), unwrap(ignoreBrokenWR));
   LDDataset.setSDDatePublishedAsDateTime(isa_1, now());
   LDDataset.setLicenseAsCreativeWork(isa_1, license_1);
   const graph = isa_1.Flatten();
@@ -104,8 +115,66 @@ function ROCrate_get_decoder() {
     }
   }, decoder);
 }
+function ROCrate_packDatasetAsCrate_Z2DB026F7(dataset, datasetName, datasetDescription, metadataFileDescriptor, license) {
+  const metadataFileDescriptor_1 = defaultArg(metadataFileDescriptor, ROCrate_get_metadataFileDescriptor());
+  const license_1 = ROCrate_createLicenseNode_29619109(license);
+  const mainEntity = LDDataset.create("./", void 0, void 0, void 0, void 0, void 0, datasetDescription, void 0, datasetName);
+  iterate((kv) => {
+    mainEntity.SetProperty(kv[0], kv[1]);
+  }, dataset.GetProperties(false));
+  LDDataset.setDateCreatedAsDateTime(mainEntity, now());
+  LDDataset.setLicenseAsCreativeWork(mainEntity, license_1);
+  const graph = mainEntity.Flatten();
+  const context = new LDContext(void 0, [initV1_2(), initBioschemasContext()]);
+  graph.SetContext(context);
+  graph.AddNode(metadataFileDescriptor_1);
+  graph.Compact_InPlace();
+  return graph;
+}
+function ROCrate_writeRunAsCrate_5E53831D(arcRun, fileSystem, license) {
+  const runDataset = ARCtrl_ArcRun__ArcRun_ToROCrateRun_1695DD5C(arcRun, fileSystem);
+  const missingDatasetProps = filter((prop) => !DynamicObj_DynamicObj__DynamicObj_HasProperty_Z721C83C5(runDataset, prop), ofArray([LDDataset.identifier, LDDataset.name, LDDataset.description, LDDataset.about, LDDataset.mentions, LDDataset.creator, LDDataset.hasPart]));
+  if (!isEmpty(missingDatasetProps)) {
+    const missingPropsStr = join(", ", map$1((p) => replace(p, "http://schema.org/", ""), missingDatasetProps));
+    toFail(printf("Run dataset is missing required properties: %s"))(missingPropsStr);
+  }
+  let workflowInvocation;
+  const matchValue = tryHead(LDDataset.getAboutsAsWorkflowInvocation(runDataset));
+  if (matchValue == null) {
+    throw new Error("Run dataset 'about' property must contain a workflowInvocation");
+  } else {
+    workflowInvocation = value(matchValue);
+  }
+  const missingWfInvocationProps = filter((prop_1) => !DynamicObj_DynamicObj__DynamicObj_HasProperty_Z721C83C5(workflowInvocation, prop_1), ofArray([LDCreateAction.name, LDCreateAction.instrument, LDCreateAction.result, LDCreateAction.object_]));
+  if (!isEmpty(missingWfInvocationProps)) {
+    const missingPropsStr_1 = join(", ", map$1((p_1) => replace(p_1, "http://schema.org/", ""), missingWfInvocationProps));
+    toFail(printf("WorkflowInvocation is missing required properties: %s"))(missingPropsStr_1);
+  }
+  return ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F(2)(ROCrate_packDatasetAsCrate_Z2DB026F7(runDataset, value(arcRun.Title), value(arcRun.Description), ROCrate_get_metadataFileDescriptorWfRun(), license));
+}
+function ROCrate_writeWorkflowAsCrate_Z4A0538D9(arcWorkflow, fileSystem, license) {
+  const workflowDataset = ARCtrl_ArcWorkflow__ArcWorkflow_ToROCrateWorkflow_1695DD5C(arcWorkflow, fileSystem);
+  const missingDatasetProps = filter((prop) => !DynamicObj_DynamicObj__DynamicObj_HasProperty_Z721C83C5(workflowDataset, prop), ofArray([LDDataset.identifier, LDDataset.name, LDDataset.description, LDDataset.mainEntity, LDDataset.hasPart, LDDataset.creator]));
+  if (!isEmpty(missingDatasetProps)) {
+    const missingPropsStr = join(", ", map$1((p) => replace(p, "http://schema.org/", ""), missingDatasetProps));
+    toFail(printf("Workflow dataset is missing required properties: %s"))(missingPropsStr);
+  }
+  let workflowProtocol;
+  const matchValue = LDDataset.tryGetMainEntityAsWorkflowProtocol(workflowDataset);
+  if (matchValue == null) {
+    throw new Error("Workflow dataset 'mainEntity' property must contain a workflow protocol");
+  } else {
+    workflowProtocol = value(matchValue);
+  }
+  const missingProtocolProps = filter((prop_1) => !DynamicObj_DynamicObj__DynamicObj_HasProperty_Z721C83C5(workflowProtocol, prop_1), ofArray([LDComputationalWorkflow.creator, LDComputationalWorkflow.name, LDComputationalWorkflow.input, LDComputationalWorkflow.output, LDComputationalWorkflow.programmingLanguage, LDComputationalWorkflow.url, LDComputationalWorkflow.version, LDComputationalWorkflow.dateCreated]));
+  if (!isEmpty(missingProtocolProps)) {
+    const missingPropsStr_1 = join(", ", map$1((p_1) => replace(p_1, "http://schema.org/", ""), missingProtocolProps));
+    toFail(printf("Workflow protocol is missing required properties: %s"))(missingPropsStr_1);
+  }
+  return ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F(2)(ROCrate_packDatasetAsCrate_Z2DB026F7(workflowDataset, value(arcWorkflow.Title), value(arcWorkflow.Description), ROCrate_get_metadataFileDescriptorWfRun(), license));
+}
 function ROCrate_get_decoderDeprecated() {
   return map((ldnode) => ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(exactlyOne(LDDataset.getAbouts(ldnode)), void 0, initV1_1()), decoder$1);
 }
-export { ROCrate, ROCrate_$reflection, ROCrate_createLicenseNode_29619109, ROCrate_encoder_1E8A3F74, ROCrate_getLicense_Z2F770004, ROCrate_get_decoder, ROCrate_get_decoderDeprecated, ROCrate_get_metadataFileDescriptor };
+export { ROCrate, ROCrate_$reflection, ROCrate_createLicenseNode_29619109, ROCrate_encoder_Z7FE34C43, ROCrate_getLicense_Z2F770004, ROCrate_get_decoder, ROCrate_get_decoderDeprecated, ROCrate_get_metadataFileDescriptor, ROCrate_get_metadataFileDescriptorWfRun, ROCrate_packDatasetAsCrate_Z2DB026F7, ROCrate_writeRunAsCrate_5E53831D, ROCrate_writeWorkflowAsCrate_Z4A0538D9 };

package/dist/ts/ts/Yaml/ValidationPackage.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
-import { YAMLElement_$union } from '../fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js';
+import { YAMLElement_$union } from '../fable_modules/YAMLicious.1.0.0-alpha.2/YAMLiciousTypes.fs.js';
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { ValidationPackage } from '../ValidationPackages/ValidationPackage.js';
 import { int32 } from '@fable-org/fable-library-js/Int32.js';

package/dist/ts/ts/Yaml/ValidationPackage.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"ValidationPackage.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Yaml/ValidationPackage.ts"],"names":[],"mappings":"AACA,OAAO,EAAoE,kBAAkB,EAAE,MAAM,iEAAiE,CAAC;AAEvK,OAAO,EAAU,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAIvE,OAAO,EAAE,iBAAiB,EAAE,MAAM,4CAA4C,CAAC;AAI/E,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAG7D,wBAAgB,yBAAyB,CAAC,iBAAiB,EAAE,iBAAiB,GAAG,kBAAkB,CAWlG;AAED,eAAO,MAAM,yBAAyB,GAAI,SAAS,kBAAkB,KAAG,iBAG7D,CAAC;AAEZ,wBAAgB,8FAA8F,CAAC,CAAC,EAAE,MAAM,GAAG,iBAAiB,CAE3I;AAED,wBAAgB,2FAA2F,CAAC,UAAU,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,iBAAiB,KAAK,MAAM,CAAC,CAMrK;AAED,wBAAgB,oFAAoF,CAAC,KAAK,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAEhK"}