@nfdi4plants/arctrl 3.0.0-beta.14 → 3.0.0-beta.16

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (66) hide show
  1. package/dist/ts/ts/ARC.d.ts +2 -2
  2. package/dist/ts/ts/ARC.d.ts.map +1 -1
  3. package/dist/ts/ts/ARC.js +5 -5
  4. package/dist/ts/ts/CWL/CWLTypes.d.ts +50 -19
  5. package/dist/ts/ts/CWL/CWLTypes.d.ts.map +1 -1
  6. package/dist/ts/ts/CWL/CWLTypes.js +175 -39
  7. package/dist/ts/ts/CWL/Decode.d.ts +30 -4
  8. package/dist/ts/ts/CWL/Decode.d.ts.map +1 -1
  9. package/dist/ts/ts/CWL/Decode.js +679 -44
  10. package/dist/ts/ts/CWL/Encode.d.ts +13 -2
  11. package/dist/ts/ts/CWL/Encode.d.ts.map +1 -1
  12. package/dist/ts/ts/CWL/Encode.js +483 -85
  13. package/dist/ts/ts/CWL/ToolDescription.d.ts +8 -2
  14. package/dist/ts/ts/CWL/ToolDescription.d.ts.map +1 -1
  15. package/dist/ts/ts/CWL/ToolDescription.js +22 -4
  16. package/dist/ts/ts/CWL/WorkflowDescription.d.ts +8 -2
  17. package/dist/ts/ts/CWL/WorkflowDescription.d.ts.map +1 -1
  18. package/dist/ts/ts/CWL/WorkflowDescription.js +22 -4
  19. package/dist/ts/ts/CWL/WorkflowSteps.d.ts +6 -5
  20. package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map +1 -1
  21. package/dist/ts/ts/CWL/WorkflowSteps.js +5 -4
  22. package/dist/ts/ts/Conversion/Investigation.d.ts +1 -1
  23. package/dist/ts/ts/Conversion/Investigation.d.ts.map +1 -1
  24. package/dist/ts/ts/Conversion/Investigation.js +24 -4
  25. package/dist/ts/ts/Conversion/Run.d.ts.map +1 -1
  26. package/dist/ts/ts/Conversion/Run.js +74 -10
  27. package/dist/ts/ts/Conversion/Workflow.d.ts.map +1 -1
  28. package/dist/ts/ts/Conversion/Workflow.js +17 -8
  29. package/dist/ts/ts/Conversion.d.ts +2 -2
  30. package/dist/ts/ts/Conversion.d.ts.map +1 -1
  31. package/dist/ts/ts/Conversion.js +7 -7
  32. package/dist/ts/ts/Json/ROCrate/LDNode.d.ts +1 -0
  33. package/dist/ts/ts/Json/ROCrate/LDNode.d.ts.map +1 -1
  34. package/dist/ts/ts/Json/ROCrate/LDNode.js +17 -6
  35. package/dist/ts/ts/Json.d.ts +0 -2
  36. package/dist/ts/ts/Json.d.ts.map +1 -1
  37. package/dist/ts/ts/Json.js +1 -7
  38. package/dist/ts/ts/JsonIO/Investigation.d.ts +0 -6
  39. package/dist/ts/ts/JsonIO/Investigation.d.ts.map +1 -1
  40. package/dist/ts/ts/JsonIO/Investigation.js +2 -21
  41. package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.d.ts +7 -5
  42. package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.d.ts.map +1 -1
  43. package/dist/ts/ts/ROCrate/LDTypes/ComputationalWorkflow.js +26 -3
  44. package/dist/ts/ts/ROCrate/LDTypes/Dataset.d.ts +3 -1
  45. package/dist/ts/ts/ROCrate/LDTypes/Dataset.d.ts.map +1 -1
  46. package/dist/ts/ts/ROCrate/LDTypes/Dataset.js +16 -4
  47. package/dist/ts/ts/ROCrateIO.d.ts +7 -3
  48. package/dist/ts/ts/ROCrateIO.d.ts.map +1 -1
  49. package/dist/ts/ts/ROCrateIO.js +76 -7
  50. package/dist/ts/ts/Yaml/ValidationPackage.d.ts +1 -1
  51. package/dist/ts/ts/Yaml/ValidationPackage.d.ts.map +1 -1
  52. package/dist/ts/ts/Yaml/ValidationPackage.js +5 -5
  53. package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts +1 -1
  54. package/dist/ts/ts/Yaml/ValidationPackagesConfig.d.ts.map +1 -1
  55. package/dist/ts/ts/Yaml/ValidationPackagesConfig.js +5 -5
  56. package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.2}/Encode.fs.js +1 -1
  57. package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.2}/Reader.fs.js +79 -30
  58. package/package.json +1 -1
  59. /package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.2}/Decode.fs.js +0 -0
  60. /package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.2}/Interop/JsInterop.fs.js +0 -0
  61. /package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.2}/Persil.fs.js +0 -0
  62. /package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.2}/Preprocessing.fs.js +0 -0
  63. /package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.2}/Regex.fs.js +0 -0
  64. /package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.2}/RegexActivePatterns.fs.js +0 -0
  65. /package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.2}/Writer.fs.js +0 -0
  66. /package/dist/ts/ts/fable_modules/{YAMLicious.0.0.3 → YAMLicious.1.0.0-alpha.2}/YAMLiciousTypes.fs.js +0 -0
@@ -1,6 +1,6 @@
1
- import { YAMLElement_$union } from '../fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js';
1
+ import { YAMLElement_$union } from '../fable_modules/YAMLicious.1.0.0-alpha.2/YAMLiciousTypes.fs.js';
2
2
  import { FSharpList } from '@fable-org/fable-library-js/List.js';
3
- import { SchemaDefRequirementType, CWLType_$union } from './CWLTypes.js';
3
+ import { SchemaDefRequirementType, InputEnumSchema, InputRecordSchema, InputRecordField, InputArraySchema, CWLType_$union } from './CWLTypes.js';
4
4
  import { CWLOutput, OutputBinding } from './Outputs.js';
5
5
  import { CWLInput, InputBinding } from './Inputs.js';
6
6
  import { Requirement_$union } from './Requirements.js';
@@ -10,13 +10,24 @@ import { CWLWorkflowDescription } from './WorkflowDescription.js';
10
10
  import { CWLProcessingUnit_$union } from './CWLProcessingUnit.js';
11
11
  export declare function yBool(b: boolean): YAMLElement_$union;
12
12
  export declare function yMap(pairs: FSharpList<[string, YAMLElement_$union]>): YAMLElement_$union;
13
+ export declare function normalizeDocString(doc: string): string;
14
+ export declare function encodeLabel(label: string): [string, YAMLElement_$union];
15
+ export declare function encodeDoc(doc: string): [string, YAMLElement_$union];
13
16
  export declare function encodeCWLType(t: CWLType_$union): YAMLElement_$union;
17
+ export declare function encodeInputRecordField(field: InputRecordField): [string, YAMLElement_$union];
18
+ export declare function encodeInputRecordSchema(schema: InputRecordSchema): YAMLElement_$union;
19
+ export declare function encodeInputEnumSchema(schema: InputEnumSchema): YAMLElement_$union;
20
+ export declare function encodeInputArraySchema(schema: InputArraySchema): YAMLElement_$union;
14
21
  export declare function encodeOutputBinding(ob: OutputBinding): YAMLElement_$union;
15
22
  export declare function encodeCWLOutput(o: CWLOutput): [string, YAMLElement_$union];
16
23
  export declare function encodeInputBinding(ib: InputBinding): YAMLElement_$union;
17
24
  export declare function encodeCWLInput(i: CWLInput): [string, YAMLElement_$union];
18
25
  export declare function encodeSchemaDefRequirementType(s: SchemaDefRequirementType): YAMLElement_$union;
19
26
  export declare function encodeRequirement(r: Requirement_$union): YAMLElement_$union;
27
+ /**
28
+ * Encode a ResizeArray<string> as either a single string or a sequence
29
+ */
30
+ export declare function encodeSourceArray(sources: string[]): YAMLElement_$union;
20
31
  export declare function encodeStepInput(si: StepInput): [string, YAMLElement_$union];
21
32
  export declare function encodeStepInputs(inputs: StepInput[]): YAMLElement_$union;
22
33
  export declare function encodeStepOutput(so: StepOutput): YAMLElement_$union;
@@ -1 +1 @@
1
- {"version":3,"file":"Encode.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/CWL/Encode.ts"],"names":[],"mappings":"AAAA,OAAO,EAAyE,kBAAkB,EAAkC,MAAM,yDAAyD,CAAC;AACpM,OAAO,EAA2E,UAAU,EAA4B,MAAM,qCAAqC,CAAC;AAEpK,OAAO,EAAmB,wBAAwB,EAAE,cAAc,EAAkB,MAAM,eAAe,CAAC;AAE1G,OAAO,EAAE,SAAS,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AAExD,OAAO,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAErD,OAAO,EAAE,kBAAkB,EAAkE,MAAM,mBAAmB,CAAC;AAIvH,OAAO,EAAE,YAAY,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAIzE,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC1D,OAAO,EAAE,sBAAsB,EAAE,MAAM,0BAA0B,CAAC;AAClE,OAAO,EAAE,wBAAwB,EAAE,MAAM,wBAAwB,CAAC;AAElE,wBAAgB,KAAK,CAAC,CAAC,EAAE,OAAO,GAAG,kBAAkB,CAEpD;AAED,wBAAgB,IAAI,CAAC,KAAK,EAAE,UAAU,CAAC,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAAC,GAAG,kBAAkB,CAKxF;AAED,wBAAgB,aAAa,CAAC,CAAC,EAAE,cAAc,GAAG,kBAAkB,CAsCnE;AAED,wBAAgB,mBAAmB,CAAC,EAAE,EAAE,aAAa,GAAG,kBAAkB,CAEzE;AAED,wBAAgB,eAAe,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAqC1E;AAED,wBAAgB,kBAAkB,CAAC,EAAE,EAAE,YAAY,GAAG,kBAAkB,CAGvE;AAED,wBAAgB,cAAc,CAAC,CAAC,EAAE,QAAQ,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAqCxE;AAED,wBAAgB,8BAA8B,CAAC,CAAC,EAAE,wBAAwB,GAAG,kBAAkB,CAW9F;AAED,wBAAgB,iBAAiB,CAAC,CAAC,EAAE,kBAAkB,GAAG,kBAAkB,CA2F3E;AAED,wBAAgB,eAAe,CAAC,EAAE,EAAE,SAAS,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAwC3E;AAED,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,SAAS,EAAE,GAAG,kBAAkB,CAExE;AAED,wBAAgB,gBAAgB,CAAC,EAAE,EAAE,UAAU,GAAG,kBAAkB,CAEnE;AAED,wBAAgB,kBAAkB,CAAC,EAAE,EAAE,YAAY,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAkDjF;AAED,wBAAgB,SAAS,CAAC,OAAO,EAAE,kBAAkB,GAAG,MAAM,CAE7D;AAED,wBAAgB,qBAAqB,CAAC,EAAE,EAAE,kBAAkB,GAAG,MAAM,CAgGpE;AAED,wBAAgB,yBAAyB,CAAC,EAAE,EAAE,sBAAsB,GAAG,MAAM,CAsF5E;AAED,wBAAgB,oBAAoB,CAAC,EAAE,EAAE,wBAAwB,GAAG,MAAM,CAOzE"}
1
+ {"version":3,"file":"Encode.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/CWL/Encode.ts"],"names":[],"mappings":"AAAA,OAAO,EAAyE,kBAAkB,EAAkC,MAAM,iEAAiE,CAAC;AAC5M,OAAO,EAA2E,UAAU,EAA4B,MAAM,qCAAqC,CAAC;AAGpK,OAAO,EAAmB,wBAAwB,EAAE,eAAe,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,cAAc,EAAkB,MAAM,eAAe,CAAC;AAIlL,OAAO,EAAE,SAAS,EAAE,aAAa,EAAE,MAAM,cAAc,CAAC;AACxD,OAAO,EAAE,QAAQ,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AACrD,OAAO,EAAE,kBAAkB,EAAkE,MAAM,mBAAmB,CAAC;AAGvH,OAAO,EAAE,YAAY,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAIzE,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAC1D,OAAO,EAAE,sBAAsB,EAAE,MAAM,0BAA0B,CAAC;AAClE,OAAO,EAAE,wBAAwB,EAAE,MAAM,wBAAwB,CAAC;AAElE,wBAAgB,KAAK,CAAC,CAAC,EAAE,OAAO,GAAG,kBAAkB,CAEpD;AAED,wBAAgB,IAAI,CAAC,KAAK,EAAE,UAAU,CAAC,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAAC,GAAG,kBAAkB,CAKxF;AAED,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAEtD;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAEvE;AAED,wBAAgB,SAAS,CAAC,GAAG,EAAE,MAAM,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAEnE;AAED,wBAAgB,aAAa,CAAC,CAAC,EAAE,cAAc,GAAG,kBAAkB,CAqInE;AAED,wBAAgB,sBAAsB,CAAC,KAAK,EAAE,gBAAgB,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAE5F;AAED,wBAAgB,uBAAuB,CAAC,MAAM,EAAE,iBAAiB,GAAG,kBAAkB,CAKrF;AAED,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,eAAe,GAAG,kBAAkB,CAEjF;AAED,wBAAgB,sBAAsB,CAAC,MAAM,EAAE,gBAAgB,GAAG,kBAAkB,CAEnF;AAED,wBAAgB,mBAAmB,CAAC,EAAE,EAAE,aAAa,GAAG,kBAAkB,CAEzE;AAED,wBAAgB,eAAe,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CA0I1E;AAED,wBAAgB,kBAAkB,CAAC,EAAE,EAAE,YAAY,GAAG,kBAAkB,CAGvE;AAED,wBAAgB,cAAc,CAAC,CAAC,EAAE,QAAQ,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CA0IxE;AAED,wBAAgB,8BAA8B,CAAC,CAAC,EAAE,wBAAwB,GAAG,kBAAkB,CAW9F;AAED,wBAAgB,iBAAiB,CAAC,CAAC,EAAE,kBAAkB,GAAG,kBAAkB,CA2F3E;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,MAAM,EAAE,GAAG,kBAAkB,CAOvE;AAED,wBAAgB,eAAe,CAAC,EAAE,EAAE,SAAS,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CA2C3E;AAED,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,SAAS,EAAE,GAAG,kBAAkB,CAExE;AAED,wBAAgB,gBAAgB,CAAC,EAAE,EAAE,UAAU,GAAG,kBAAkB,CAEnE;AAED,wBAAgB,kBAAkB,CAAC,EAAE,EAAE,YAAY,GAAG,CAAC,MAAM,EAAE,kBAAkB,CAAC,CAkDjF;AAED,wBAAgB,SAAS,CAAC,OAAO,EAAE,kBAAkB,GAAG,MAAM,CAE7D;AAED,wBAAgB,qBAAqB,CAAC,EAAE,EAAE,kBAAkB,GAAG,MAAM,CAiGpE;AAED,wBAAgB,yBAAyB,CAAC,EAAE,EAAE,sBAAsB,GAAG,MAAM,CAuF5E;AAED,wBAAgB,oBAAoB,CAAC,EAAE,EAAE,wBAAwB,GAAG,MAAM,CAOzE"}