@nfdi4plants/arctrl 3.0.0-beta.13 → 3.0.0-beta.15

package/dist/ts/ts/Conversion/ColumnIndex.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ColumnIndex.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/ColumnIndex.ts"],"names":[],"mappings":"AAAA,OAAO,EAAY,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAEvE,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAiBhD,eAAO,MAAM,SAAS,gBAAgB,CAAC;AAEvC,wBAAgB,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC,CAqBvD;AAED,wBAAgB,QAAQ,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,GAAG,IAAI,CAEzD;AAED,wBAAgB,4CAA4C,CAAC,KAAK,EAAE,MAAM,GAAG,KAAK,CAEjF;AAED,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC,CAE5F;AAED,wBAAgB,sDAAsD,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,GAAG,IAAI,CAExG"}
+{"version":3,"file":"ColumnIndex.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/ColumnIndex.ts"],"names":[],"mappings":"AAAA,OAAO,EAAY,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAEvE,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAiBhD,eAAO,MAAM,SAAS,gBAAgB,CAAC;AAEvC,eAAO,MAAM,oBAAoB,8CAA8C,CAAC;AAEhF,wBAAgB,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC,CAyCvD;AAED,wBAAgB,QAAQ,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,GAAG,IAAI,CAEzD;AAED,wBAAgB,4CAA4C,CAAC,KAAK,EAAE,MAAM,GAAG,KAAK,CAEjF;AAED,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC,KAAK,CAAC,CAE5F;AAED,wBAAgB,sDAAsD,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,GAAG,IAAI,CAExG"}

package/dist/ts/ts/Conversion/ColumnIndex.js

@@ -16,8 +16,9 @@ function tryInt(str) {
   }
 }
 const orderName = "columnIndex";
+const columndIndexProperty = "https://w3id.org/ro/terms/arc#columnIndex";
 function tryGetIndex(node) {
-  const matchValue = node.TryGetPropertyAsSingleton(orderName);
+  const matchValue = node.TryGetPropertyAsSingleton(columndIndexProperty);
   let matchResult, ci;
   if (matchValue != null) {
     if (typeof value(matchValue) === "string") {
@@ -32,12 +33,30 @@ function tryGetIndex(node) {
   switch (matchResult) {
     case 0:
       return tryInt(ci);
-    default:
-      return void 0;
+    default: {
+      const matchValue_1 = node.TryGetPropertyAsSingleton(orderName);
+      let matchResult_1, ci_1;
+      if (matchValue_1 != null) {
+        if (typeof value(matchValue_1) === "string") {
+          matchResult_1 = 0;
+          ci_1 = value(matchValue_1);
+        } else {
+          matchResult_1 = 1;
+        }
+      } else {
+        matchResult_1 = 1;
+      }
+      switch (matchResult_1) {
+        case 0:
+          return tryInt(ci_1);
+        default:
+          return void 0;
+      }
+    }
   }
 }
 function setIndex(node, index) {
-  node.SetProperty(orderName, int32ToString(index));
+  node.SetProperty(columndIndexProperty, int32ToString(index));
 }
 function ARCtrl_ROCrate_LDNode__LDNode_GetColumnIndex(this$) {
   return value(tryGetIndex(this$));
@@ -49,4 +68,4 @@ function ARCtrl_ROCrate_LDNode__LDNode_SetColumnIndex_Z524259A4(this$, index) {
   setIndex(this$, index);
 }
 
-export { ARCtrl_ROCrate_LDNode__LDNode_GetColumnIndex, ARCtrl_ROCrate_LDNode__LDNode_SetColumnIndex_Z524259A4, ARCtrl_ROCrate_LDNode__LDNode_TryGetColumnIndex, orderName, setIndex, tryGetIndex };
+export { ARCtrl_ROCrate_LDNode__LDNode_GetColumnIndex, ARCtrl_ROCrate_LDNode__LDNode_SetColumnIndex_Z524259A4, ARCtrl_ROCrate_LDNode__LDNode_TryGetColumnIndex, columndIndexProperty, orderName, setIndex, tryGetIndex };

package/dist/ts/ts/Conversion/Datamap.d.ts

@@ -1,11 +1,11 @@
 import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
 import { LDGraph, LDNode } from '../ROCrate/LDObject.js';
-import { DataMap } from '../Core/DataMap.js';
+import { Datamap } from '../Core/Datamap.js';
 import { LDContext } from '../ROCrate/LDContext.js';
 export declare class DatamapConversion {
     constructor();
 }
 export declare function DatamapConversion_$reflection(): TypeInfo;
-export declare function DatamapConversion_composeFragmentDescriptors_Z8923FA3(datamap: DataMap): LDNode[];
-export declare function DatamapConversion_decomposeFragmentDescriptors_Z6E59645F(fragmentDescriptors: LDNode[], graph?: LDGraph, context?: LDContext): DataMap;
+export declare function DatamapConversion_composeFragmentDescriptors_Z892BFC3(datamap: Datamap): LDNode[];
+export declare function DatamapConversion_decomposeFragmentDescriptors_Z6E59645F(fragmentDescriptors: LDNode[], graph?: LDGraph, context?: LDContext): Datamap;
 //# sourceMappingURL=Datamap.d.ts.map

package/dist/ts/ts/Conversion/Datamap.js

@@ -1,7 +1,7 @@
 import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
 import { ResizeArray_map } from '../Core/Helper/Collections.js';
 import { BaseTypes_composeFragmentDescriptor_Z4C0BEF62, BaseTypes_decomposeFragmentDescriptor_Z6839B9E8 } from './Basic.js';
-import { DataMap } from '../Core/DataMap.js';
+import { Datamap } from '../Core/Datamap.js';
 import { unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
 
 class DatamapConversion {
@@ -11,11 +11,11 @@ class DatamapConversion {
 function DatamapConversion_$reflection() {
   return class_type("ARCtrl.Conversion.DatamapConversion", void 0, DatamapConversion);
 }
-function DatamapConversion_composeFragmentDescriptors_Z8923FA3(datamap) {
+function DatamapConversion_composeFragmentDescriptors_Z892BFC3(datamap) {
   return ResizeArray_map(BaseTypes_composeFragmentDescriptor_Z4C0BEF62, datamap.DataContexts);
 }
 function DatamapConversion_decomposeFragmentDescriptors_Z6E59645F(fragmentDescriptors, graph, context) {
-  return new DataMap(ResizeArray_map((fd) => BaseTypes_decomposeFragmentDescriptor_Z6839B9E8(fd, unwrap(graph), unwrap(context)), fragmentDescriptors));
+  return new Datamap(ResizeArray_map((fd) => BaseTypes_decomposeFragmentDescriptor_Z6839B9E8(fd, unwrap(graph), unwrap(context)), fragmentDescriptors));
 }
 
-export { DatamapConversion, DatamapConversion_$reflection, DatamapConversion_composeFragmentDescriptors_Z8923FA3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F };
+export { DatamapConversion, DatamapConversion_$reflection, DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F };

package/dist/ts/ts/Conversion/Run.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Run.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Run.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAQjF,OAAO,EAAE,QAAQ,EAAgB,MAAM,kBAAkB,CAAC;AAI1D,OAAO,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AACrE,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAEzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEpD,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AASvE,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAWzD,qBAAa,aAAa;;CAGzB;AAED,wBAAgB,yBAAyB,IAAI,QAAQ,CAEpD;AAED;;;;GAIG;AACH,wBAAgB,+CAA+C,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAOrG;AAED,wBAAgB,iDAAiD,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAQvG;AAED,wBAAgB,2CAA2C,CAAC,UAAU,EAAE,qBAAqB,EAAE,aAAa,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAwCnK;AAED,wBAAgB,8CAA8C,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,qBAAqB,CAqB/J;AAED,wBAAgB,0DAA0D,CAAC,GAAG,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,EAAE,CAkDjH;AAED,wBAAgB,uDAAuD,CAAC,kBAAkB,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,CAAC,wBAAwB,EAAE,qBAAqB,EAAE,CAAC,CAK9M;AAED,wBAAgB,iCAAiC,CAAC,GAAG,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAYtF;AAED,wBAAgB,oCAAoC,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAa9G"}
+{"version":3,"file":"Run.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Run.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAQjF,OAAO,EAAE,QAAQ,EAAgB,MAAM,kBAAkB,CAAC;AAI1D,OAAO,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AACrE,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAEzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAEpD,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AASvE,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAYzD,qBAAa,aAAa;;CAGzB;AAED,wBAAgB,yBAAyB,IAAI,QAAQ,CAEpD;AAED;;;;GAIG;AACH,wBAAgB,+CAA+C,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAOrG;AAED,wBAAgB,iDAAiD,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAQvG;AAED,wBAAgB,2CAA2C,CAAC,UAAU,EAAE,qBAAqB,EAAE,aAAa,EAAE,MAAM,EAAE,UAAU,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,CAwCnK;AAED,wBAAgB,8CAA8C,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,qBAAqB,CAqB/J;AAED,wBAAgB,0DAA0D,CAAC,GAAG,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,EAAE,CAkDjH;AAED,wBAAgB,uDAAuD,CAAC,kBAAkB,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,OAAO,GAAG,CAAC,wBAAwB,EAAE,qBAAqB,EAAE,CAAC,CAK9M;AAED,wBAAgB,iCAAiC,CAAC,GAAG,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAYtF;AAED,wBAAgB,oCAAoC,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,CAmC9G"}

package/dist/ts/ts/Conversion/Run.js

@@ -12,7 +12,7 @@ import { CWLParameterReference } from '../CWL/ParameterReference.js';
 import { LDFormalParameter } from '../ROCrate/LDTypes/FormalParameter.js';
 import { Run_cwlFileNameFromIdentifier } from '../Core/Helper/Identifier.js';
 import { WorkflowConversion_composeWorkflowProtocolFromProcessingUnit_Z3099C0F7, WorkflowConversion_getInputParametersFromProcessingUnit_30922B92, WorkflowConversion_decomposeWorkflowProtocolToProcessingUnit_2664C4B8 } from './Workflow.js';
-import { tryPick, find, exists } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { tryPick, find } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { LDComputationalWorkflow } from '../ROCrate/LDTypes/ComputationalWorkflow.js';
 import { ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586 } from './Table.js';
 import { ArcTables } from '../Core/Table/ArcTables.js';
@@ -22,10 +22,11 @@ import { LDLabProcess } from '../ROCrate/LDTypes/LabProcess.js';
 import { ArcRun } from '../Core/ArcTypes.js';
 import { BaseTypes_composeDefinedTerm_ZDED3A0F, BaseTypes_composePropertyValueFromOA_ZDED3A0F, BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeDefinedTerm_Z2F770004, BaseTypes_decomposePropertyValueToOA_Z2F770004, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
 import { PersonConversion_composePerson_Z64D846DC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
-import { DatamapConversion_composeFragmentDescriptors_Z8923FA3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
-import { DataMap } from '../Core/DataMap.js';
+import { DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
+import { Datamap } from '../Core/Datamap.js';
 import { AssayConversion_getDataFilesFromProcesses_6BABD1B0 } from './Assay.js';
 import { LDDataset } from '../ROCrate/LDTypes/Dataset.js';
+import { LDWorkflowProtocol } from '../ROCrate/LDTypes/WorkflowProtocol.js';
 
 class RunConversion {
   constructor() {
@@ -128,7 +129,7 @@ function RunConversion_composeWorkflowInvocationFromArcRun_Z8CC08AC(run, fs) {
       }
     }, run.CWLInput);
     if (paramRef == null) {
-      throw new Error(`Could not create workflow invocation for run "${run.Identifier}": Workflow parameter "name" had no assigned value.`);
+      throw new Error(`Could not create workflow invocation for run "${run.Identifier}": Workflow parameter "${name}" had no assigned value.`);
     } else {
       return RunConversion_composeCWLInputValue_70DD9184(value(paramRef), ldI, tupledArg[0], run.Identifier);
     }
@@ -166,25 +167,45 @@ function RunConversion_composeRun_Z8CC08AC(run, fs) {
   const measurementTechnique = map(BaseTypes_composeDefinedTerm_ZDED3A0F, run.TechnologyPlatform);
   const variableMeasured = map(BaseTypes_composePropertyValueFromOA_ZDED3A0F, run.MeasurementType);
   const creators = Option_fromSeq(ResizeArray_map(PersonConversion_composePerson_Z64D846DC, run.Performers));
-  const fragmentDescriptors = map(DatamapConversion_composeFragmentDescriptors_Z8923FA3, run.DataMap);
+  const fragmentDescriptors = map(DatamapConversion_composeFragmentDescriptors_Z892BFC3, run.Datamap);
   const dataFiles = map((ps) => AssayConversion_getDataFilesFromProcesses_6BABD1B0(ps, unwrap(fragmentDescriptors)), workflowInvocations);
   const variableMeasureds = variableMeasured == null ? fragmentDescriptors == null ? void 0 : (fds_1 = value(fragmentDescriptors), fds_1) : fragmentDescriptors == null ? (vm_1 = value(variableMeasured), ResizeArray_singleton(vm_1)) : (fds = value(fragmentDescriptors), vm = value(variableMeasured), ResizeArray_appendSingleton(vm, fds));
   const comments = Option_fromSeq(ResizeArray_map(BaseTypes_composeComment_Z13201A7E, run.Comments));
   return LDDataset.createARCRun(run.Identifier, void 0, unwrap(run.Title), unwrap(run.Description), unwrap(creators), unwrap(dataFiles), unwrap(measurementMethod), unwrap(measurementTechnique), unwrap(variableMeasureds), unwrap(workflowInvocations), unwrap(workflowInvocations), unwrap(comments));
 }
 function RunConversion_decomposeRun_Z6839B9E8(run, graph, context) {
-  const mainWorkflowInvocation = find((wi) => exists((i) => LDFile.tryGetExampleOfWorkAsFormalParameter(i, unwrap(graph), unwrap(context)) != null, LDLabProcess.getObjects(wi, unwrap(graph), unwrap(context))), LDDataset.getAboutsAsWorkflowInvocation(run, unwrap(graph), unwrap(context)));
+  const mainWorkflowInvocation = find((wi) => {
+    let lp;
+    const matchValue = LDLabProcess.tryGetExecutesLabProtocol(wi, unwrap(graph), unwrap(context));
+    let matchResult, lp_1;
+    if (matchValue != null) {
+      if (lp = value(matchValue), LDWorkflowProtocol.validate(lp, unwrap(context))) {
+        matchResult = 0;
+        lp_1 = value(matchValue);
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+    switch (matchResult) {
+      case 0:
+        return true;
+      default:
+        return false;
+    }
+  }, LDDataset.getAboutsAsWorkflowInvocation(run, unwrap(graph), unwrap(context)));
   const patternInput = RunConversion_decomposeMainWorkflowInvocation_Z1346FE9D(mainWorkflowInvocation, LDDataset.getIdentifierAsString(run, unwrap(context)), unwrap(context), unwrap(graph));
   const measurementMethod = map((m) => BaseTypes_decomposeDefinedTerm_Z2F770004(m, unwrap(context)), LDDataset.tryGetMeasurementMethodAsDefinedTerm(run, unwrap(graph), unwrap(context)));
   const measurementTechnique = map((m_1) => BaseTypes_decomposeDefinedTerm_Z2F770004(m_1, unwrap(context)), LDDataset.tryGetMeasurementTechniqueAsDefinedTerm(run, unwrap(graph), unwrap(context)));
   const variableMeasured = map((v) => BaseTypes_decomposePropertyValueToOA_Z2F770004(v, unwrap(context)), LDDataset.tryGetVariableMeasuredAsMeasurementType(run, unwrap(graph), unwrap(context)));
   const contacts = ResizeArray_map((c) => PersonConversion_decomposePerson_Z6839B9E8(c, unwrap(graph), unwrap(context)), LDDataset.getCreators(run, unwrap(graph), unwrap(context)));
   const comments = ResizeArray_map((c_1) => BaseTypes_decomposeComment_Z2F770004(c_1, unwrap(context)), LDDataset.getComments(run, unwrap(graph), unwrap(context)));
-  let dataMap;
+  let datamap;
   const v_1 = DatamapConversion_decomposeFragmentDescriptors_Z6E59645F(LDDataset.getVariableMeasuredAsFragmentDescriptors(run, unwrap(graph), unwrap(context)), unwrap(graph), unwrap(context));
-  dataMap = Option_fromValueWithDefault(DataMap.init(), v_1);
+  datamap = Option_fromValueWithDefault(Datamap.init(), v_1);
   const tables = ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586(ofSeq(ResizeArray_filter((wi_1) => wi_1.Id !== mainWorkflowInvocation.Id, LDDataset.getAboutsAsLabProcess(run, unwrap(graph), unwrap(context)))), unwrap(graph), unwrap(context));
-  return ArcRun.create(LDDataset.getIdentifierAsString(run, unwrap(context)), unwrap(LDDataset.tryGetNameAsString(run, unwrap(context))), unwrap(LDDataset.tryGetDescriptionAsString(run, unwrap(context))), unwrap(variableMeasured), unwrap(measurementMethod), unwrap(measurementTechnique), void 0, tables.Tables, unwrap(dataMap), contacts, patternInput[0], patternInput[1], comments);
+  return ArcRun.create(LDDataset.getIdentifierAsString(run, unwrap(context)), unwrap(LDDataset.tryGetNameAsString(run, unwrap(context))), unwrap(LDDataset.tryGetDescriptionAsString(run, unwrap(context))), unwrap(variableMeasured), unwrap(measurementMethod), unwrap(measurementTechnique), void 0, tables.Tables, unwrap(datamap), contacts, patternInput[0], patternInput[1], comments);
 }
 
 export { RunConversion, RunConversion_$reflection, RunConversion_composeCWLInputFilePath_Z384F8060, RunConversion_composeCWLInputValue_70DD9184, RunConversion_composeRun_Z8CC08AC, RunConversion_composeWorkflowInvocationFromArcRun_Z8CC08AC, RunConversion_decomposeCWLInputFilePath_Z384F8060, RunConversion_decomposeCWLInputValue_Z1346FE9D, RunConversion_decomposeMainWorkflowInvocation_Z1346FE9D, RunConversion_decomposeRun_Z6839B9E8 };

package/dist/ts/ts/Conversion/Study.js

@@ -7,8 +7,8 @@ import { ScholarlyArticleConversion_composeScholarlyArticle_D324A6D, ScholarlyAr
 import { PersonConversion_composePerson_Z64D846DC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
 import { ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C, ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586 } from './Table.js';
 import { ArcTables } from '../Core/Table/ArcTables.js';
-import { DatamapConversion_composeFragmentDescriptors_Z8923FA3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
-import { DataMap } from '../Core/DataMap.js';
+import { DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
+import { Datamap } from '../Core/Datamap.js';
 import { AssayConversion_getDataFilesFromProcesses_6BABD1B0 } from './Assay.js';
 import { BaseTypes_composeComment_Z13201A7E, BaseTypes_decomposeComment_Z2F770004 } from './Basic.js';
 import { LDDataset } from '../ROCrate/LDTypes/Dataset.js';
@@ -30,7 +30,7 @@ function StudyConversion_composeStudy_ZFE0E38E(study, fs) {
   const publications = Option_fromSeq(ResizeArray_map(ScholarlyArticleConversion_composeScholarlyArticle_D324A6D, study.Publications));
   const creators = Option_fromSeq(ResizeArray_map(PersonConversion_composePerson_Z64D846DC, study.Contacts));
   const processSequence = Option_fromSeq((collection = ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C(new ArcTables(study.Tables), void 0, study.Identifier, unwrap(fs)), Array.from(collection)));
-  const fragmentDescriptors = map(DatamapConversion_composeFragmentDescriptors_Z8923FA3, study.DataMap);
+  const fragmentDescriptors = map(DatamapConversion_composeFragmentDescriptors_Z892BFC3, study.Datamap);
   const dataFiles = map((ps) => AssayConversion_getDataFilesFromProcesses_6BABD1B0(ps, unwrap(fragmentDescriptors)), processSequence);
   const comments = Option_fromSeq(ResizeArray_map(BaseTypes_composeComment_Z13201A7E, study.Comments));
   return LDDataset.createStudy(study.Identifier, void 0, unwrap(creators), unwrap(dateCreated), unwrap(datePublished), dateModified, unwrap(study.Description), unwrap(dataFiles), unwrap(study.Title), unwrap(publications), unwrap(fragmentDescriptors), unwrap(comments), void 0, unwrap(processSequence));
@@ -40,12 +40,12 @@ function StudyConversion_decomposeStudy_Z6839B9E8(study, graph, context) {
   const datePublished = map(toString, LDDataset.tryGetDatePublishedAsDateTime(study, unwrap(context)));
   const publications = ResizeArray_map((p) => ScholarlyArticleConversion_decomposeScholarlyArticle_Z6839B9E8(p, unwrap(graph), unwrap(context)), LDDataset.getCitations(study, unwrap(graph), unwrap(context)));
   const creators = ResizeArray_map((c) => PersonConversion_decomposePerson_Z6839B9E8(c, unwrap(graph), unwrap(context)), LDDataset.getCreators(study, unwrap(graph), unwrap(context)));
-  let dataMap;
+  let datamap;
   const v = DatamapConversion_decomposeFragmentDescriptors_Z6E59645F(LDDataset.getVariableMeasuredAsFragmentDescriptors(study, unwrap(graph), unwrap(context)), unwrap(graph), unwrap(context));
-  dataMap = Option_fromValueWithDefault(DataMap.init(), v);
+  datamap = Option_fromValueWithDefault(Datamap.init(), v);
   const tables = ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586(ofSeq(LDDataset.getAboutsAsLabProcess(study, unwrap(graph), unwrap(context))), unwrap(graph), unwrap(context));
   const comments = ResizeArray_map((c_1) => BaseTypes_decomposeComment_Z2F770004(c_1, unwrap(context)), LDDataset.getComments(study, unwrap(graph), unwrap(context)));
-  return ArcStudy.create(LDDataset.getIdentifierAsString(study, unwrap(context)), unwrap(LDDataset.tryGetNameAsString(study, unwrap(context))), unwrap(LDDataset.tryGetDescriptionAsString(study, unwrap(context))), unwrap(dateCreated), unwrap(datePublished), publications, creators, void 0, tables.Tables, unwrap(dataMap), void 0, comments);
+  return ArcStudy.create(LDDataset.getIdentifierAsString(study, unwrap(context)), unwrap(LDDataset.tryGetNameAsString(study, unwrap(context))), unwrap(LDDataset.tryGetDescriptionAsString(study, unwrap(context))), unwrap(dateCreated), unwrap(datePublished), publications, creators, void 0, tables.Tables, unwrap(datamap), void 0, comments);
 }
 
 export { StudyConversion, StudyConversion_$reflection, StudyConversion_composeStudy_ZFE0E38E, StudyConversion_decomposeStudy_Z6839B9E8 };

package/dist/ts/ts/Conversion/Workflow.js

@@ -24,8 +24,8 @@ import { WorkflowStep, StepOutput } from '../CWL/WorkflowSteps.js';
 import { Workflow_cwlFileNameFromIdentifier } from '../Core/Helper/Identifier.js';
 import { toFail, printf } from '../../node_modules/@fable-org/fable-library-js/String.js';
 import { LDLabProtocol } from '../ROCrate/LDTypes/LabProtocol.js';
-import { DatamapConversion_composeFragmentDescriptors_Z8923FA3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
-import { DataMap } from '../Core/DataMap.js';
+import { DatamapConversion_composeFragmentDescriptors_Z892BFC3, DatamapConversion_decomposeFragmentDescriptors_Z6E59645F } from './Datamap.js';
+import { Datamap } from '../Core/Datamap.js';
 import { PersonConversion_composePerson_Z64D846DC, PersonConversion_decomposePerson_Z6839B9E8 } from './Person.js';
 import { ArcWorkflow } from '../Core/ArcTypes.js';
 
@@ -277,7 +277,7 @@ function WorkflowConversion_composeWorkflow_42450E6E(workflow, fs) {
     const intendedUse = BaseTypes_composeDefinedTerm_ZDED3A0F(value(workflow.WorkflowType));
     LDLabProtocol.setIntendedUseAsDefinedTerm(workflowProtocol, intendedUse);
   }
-  const dataFiles = ResizeArray_choose((df) => LDPropertyValue.tryGetSubjectOf(df), defaultArg(map(DatamapConversion_composeFragmentDescriptors_Z8923FA3, workflow.DataMap), []));
+  const dataFiles = ResizeArray_choose((df) => LDPropertyValue.tryGetSubjectOf(df), defaultArg(map(DatamapConversion_composeFragmentDescriptors_Z892BFC3, workflow.Datamap), []));
   if (workflow.Components.length > 0) {
     const softwareTools = ResizeArray_map(WorkflowConversion_composeComputationalTool_Z685B8F25, workflow.Components);
     LDLabProtocol.setComputationalTools(workflowProtocol, softwareTools);
@@ -296,10 +296,10 @@ function WorkflowConversion_decomposeWorkflow_Z6839B9E8(workflow, graph, context
   const components = ResizeArray_map((ct) => WorkflowConversion_decomposeComputationalTool_Z6839B9E8(ct, unwrap(graph), unwrap(context)), LDLabProtocol.getComputationalTools(workflowProtocol, unwrap(graph), unwrap(context)));
   const contacts = ResizeArray_map((c) => PersonConversion_decomposePerson_Z6839B9E8(c, unwrap(graph), unwrap(context)), LDDataset.getCreators(workflow, unwrap(graph), unwrap(context)));
   const comments = ResizeArray_map((c_1) => BaseTypes_decomposeComment_Z2F770004(c_1, unwrap(context)), LDDataset.getComments(workflow, unwrap(graph), unwrap(context)));
-  let dataMap;
+  let datamap;
   const v = DatamapConversion_decomposeFragmentDescriptors_Z6E59645F(LDDataset.getVariableMeasuredAsFragmentDescriptors(workflow, unwrap(graph), unwrap(context)), unwrap(graph), unwrap(context));
-  dataMap = Option_fromValueWithDefault(DataMap.init(), v);
-  return ArcWorkflow.create(LDDataset.getIdentifierAsString(workflow, unwrap(context)), unwrap(LDDataset.tryGetNameAsString(workflow, unwrap(context))), unwrap(LDDataset.tryGetDescriptionAsString(workflow, unwrap(context))), unwrap(workflowType), unwrap(uri), unwrap(version), void 0, void 0, components, unwrap(dataMap), contacts, cwlDescription, comments);
+  datamap = Option_fromValueWithDefault(Datamap.init(), v);
+  return ArcWorkflow.create(LDDataset.getIdentifierAsString(workflow, unwrap(context)), unwrap(LDDataset.tryGetNameAsString(workflow, unwrap(context))), unwrap(LDDataset.tryGetDescriptionAsString(workflow, unwrap(context))), unwrap(workflowType), unwrap(uri), unwrap(version), void 0, void 0, components, unwrap(datamap), contacts, cwlDescription, comments);
 }
 
 export { WorkflowConversion, WorkflowConversion_$reflection, WorkflowConversion_composeAdditionalType_Z5C31A0F9, WorkflowConversion_composeComputationalTool_Z685B8F25, WorkflowConversion_composeFormalParamInputIdentifiers, WorkflowConversion_composeFormalParameterFromInput_Z7A02DED7, WorkflowConversion_composeFormalParameterFromOutput_Z25C7EC80, WorkflowConversion_composeFormalParameterOutputIdentifiers_6DFDD678, WorkflowConversion_composeWorkflowProtocolFromProcessingUnit_Z3099C0F7, WorkflowConversion_composeWorkflowProtocolFromToolDescription_7B8357DA, WorkflowConversion_composeWorkflowProtocolFromWorkflow_Z6FBB852F, WorkflowConversion_composeWorkflowStep_Z35AB9E5D, WorkflowConversion_composeWorkflow_42450E6E, WorkflowConversion_decomposeAdditionalType_Z721C83C5, WorkflowConversion_decomposeComputationalTool_Z6839B9E8, WorkflowConversion_decomposeInputBindings_1AAAE9A5, WorkflowConversion_decomposeInputFromFormalParameter_2664C4B8, WorkflowConversion_decomposeOutputBindings_1AAAE9A5, WorkflowConversion_decomposeOutputFromFormalParameter_2664C4B8, WorkflowConversion_decomposeWorkflowProtocolToProcessingUnit_2664C4B8, WorkflowConversion_decomposeWorkflowProtocolToToolDescription_2664C4B8, WorkflowConversion_decomposeWorkflowProtocolToWorkflow_2664C4B8, WorkflowConversion_decomposeWorkflowStep_2664C4B8, WorkflowConversion_decomposeWorkflow_Z6839B9E8, WorkflowConversion_getInputParametersFromProcessingUnit_30922B92, WorkflowConversion_get_toolDescriptionTypeName, WorkflowConversion_get_workflowDescriptionTypeName };

package/dist/ts/ts/Core/ArcTypes.d.ts

@@ -1,6 +1,6 @@
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { OntologyAnnotation } from './OntologyAnnotation.js';
-import { DataMap } from './DataMap.js';
+import { Datamap } from './Datamap.js';
 import { Person } from './Person.js';
 import { Remark, Comment$ } from './Comment.js';
 import { int32 } from '@fable-org/fable-library-js/Int32.js';
@@ -23,11 +23,11 @@ export declare class ArcAssay extends ArcTables implements Iterable<ArcTable> {
     "measurementType@136": Option<OntologyAnnotation>;
     "technologyType@137": Option<OntologyAnnotation>;
     "technologyPlatform@138": Option<OntologyAnnotation>;
-    dataMap: Option<DataMap>;
+    "datamap@139": Option<Datamap>;
     "performers@140-1": Person[];
     "comments@141-1": Comment$[];
     staticHash: int32;
-    constructor(identifier: string, title?: string, description?: string, measurementType?: OntologyAnnotation, technologyType?: OntologyAnnotation, technologyPlatform?: OntologyAnnotation, tables?: ArcTable[], datamap?: DataMap, performers?: Person[], comments?: Comment$[]);
+    constructor(identifier: string, title?: string, description?: string, measurementType?: OntologyAnnotation, technologyType?: OntologyAnnotation, technologyPlatform?: OntologyAnnotation, tables?: ArcTable[], datamap?: Datamap, performers?: Person[], comments?: Comment$[]);
     get Identifier(): string;
     set Identifier(i: string);
     get Investigation(): ArcInvestigation | undefined;
@@ -42,8 +42,8 @@ export declare class ArcAssay extends ArcTables implements Iterable<ArcTable> {
     set TechnologyType(n: Option<OntologyAnnotation>);
     get TechnologyPlatform(): OntologyAnnotation | undefined;
     set TechnologyPlatform(n: Option<OntologyAnnotation>);
-    get DataMap(): DataMap | undefined;
-    set DataMap(n: Option<DataMap>);
+    get Datamap(): Datamap | undefined;
+    set Datamap(n: Option<Datamap>);
     get Performers(): Person[];
     set Performers(n: Person[]);
     get Comments(): Comment$[];
@@ -51,8 +51,8 @@ export declare class ArcAssay extends ArcTables implements Iterable<ArcTable> {
     get StaticHash(): int32;
     set StaticHash(h: int32);
     static init(identifier: string): ArcAssay;
-    static create(identifier: string, title?: string, description?: string, measurementType?: OntologyAnnotation, technologyType?: OntologyAnnotation, technologyPlatform?: OntologyAnnotation, tables?: ArcTable[], datamap?: DataMap, performers?: Person[], comments?: Comment$[]): ArcAssay;
-    static make(identifier: string, title: Option<string>, description: Option<string>, measurementType: Option<OntologyAnnotation>, technologyType: Option<OntologyAnnotation>, technologyPlatform: Option<OntologyAnnotation>, tables: ArcTable[], datamap: Option<DataMap>, performers: Person[], comments: Comment$[]): ArcAssay;
+    static create(identifier: string, title?: string, description?: string, measurementType?: OntologyAnnotation, technologyType?: OntologyAnnotation, technologyPlatform?: OntologyAnnotation, tables?: ArcTable[], datamap?: Datamap, performers?: Person[], comments?: Comment$[]): ArcAssay;
+    static make(identifier: string, title: Option<string>, description: Option<string>, measurementType: Option<OntologyAnnotation>, technologyType: Option<OntologyAnnotation>, technologyPlatform: Option<OntologyAnnotation>, tables: ArcTable[], datamap: Option<Datamap>, performers: Person[], comments: Comment$[]): ArcAssay;
     static get FileName(): string;
     get StudiesRegisteredIn(): ArcStudy[];
     static addTable(table: ArcTable, index?: int32): ((arg0: ArcAssay) => ArcAssay);
@@ -101,7 +101,7 @@ export declare class ArcAssay extends ArcTables implements Iterable<ArcTable> {
     GetHashCode(): int32;
 }
 export declare function ArcAssay_$reflection(): TypeInfo;
-export declare function ArcAssay_$ctor_11E1F34(identifier: string, title?: string, description?: string, measurementType?: OntologyAnnotation, technologyType?: OntologyAnnotation, technologyPlatform?: OntologyAnnotation, tables?: ArcTable[], datamap?: DataMap, performers?: Person[], comments?: Comment$[]): ArcAssay;
+export declare function ArcAssay_$ctor_Z69B192EC(identifier: string, title?: string, description?: string, measurementType?: OntologyAnnotation, technologyType?: OntologyAnnotation, technologyPlatform?: OntologyAnnotation, tables?: ArcTable[], datamap?: Datamap, performers?: Person[], comments?: Comment$[]): ArcAssay;
 export declare class ArcStudy extends ArcTables implements Iterable<ArcTable> {
     "identifier@579": string;
     investigation: Option<ArcInvestigation>;
@@ -112,11 +112,11 @@ export declare class ArcStudy extends ArcTables implements Iterable<ArcTable> {
     "publications@588-1": Publication[];
     "contacts@589-1": Person[];
     "studyDesignDescriptors@590-1": OntologyAnnotation[];
-    "datamap@591": Option<DataMap>;
+    "datamap@591": Option<Datamap>;
     "registeredAssayIdentifiers@592-1": string[];
     "comments@593-1": Comment$[];
     staticHash: int32;
-    constructor(identifier: string, title?: string, description?: string, submissionDate?: string, publicReleaseDate?: string, publications?: Publication[], contacts?: Person[], studyDesignDescriptors?: OntologyAnnotation[], tables?: ArcTable[], datamap?: DataMap, registeredAssayIdentifiers?: string[], comments?: Comment$[]);
+    constructor(identifier: string, title?: string, description?: string, submissionDate?: string, publicReleaseDate?: string, publications?: Publication[], contacts?: Person[], studyDesignDescriptors?: OntologyAnnotation[], tables?: ArcTable[], datamap?: Datamap, registeredAssayIdentifiers?: string[], comments?: Comment$[]);
     get Identifier(): string;
     set Identifier(i: string);
     get Investigation(): ArcInvestigation | undefined;
@@ -135,8 +135,8 @@ export declare class ArcStudy extends ArcTables implements Iterable<ArcTable> {
     set Contacts(n: Person[]);
     get StudyDesignDescriptors(): OntologyAnnotation[];
     set StudyDesignDescriptors(n: OntologyAnnotation[]);
-    get DataMap(): DataMap | undefined;
-    set DataMap(n: Option<DataMap>);
+    get Datamap(): Datamap | undefined;
+    set Datamap(n: Option<Datamap>);
     get RegisteredAssayIdentifiers(): string[];
     set RegisteredAssayIdentifiers(n: string[]);
     get Comments(): Comment$[];
@@ -144,8 +144,8 @@ export declare class ArcStudy extends ArcTables implements Iterable<ArcTable> {
     get StaticHash(): int32;
     set StaticHash(h: int32);
     static init(identifier: string): ArcStudy;
-    static create(identifier: string, title?: string, description?: string, submissionDate?: string, publicReleaseDate?: string, publications?: Publication[], contacts?: Person[], studyDesignDescriptors?: OntologyAnnotation[], tables?: ArcTable[], datamap?: DataMap, registeredAssayIdentifiers?: string[], comments?: Comment$[]): ArcStudy;
-    static make(identifier: string, title: Option<string>, description: Option<string>, submissionDate: Option<string>, publicReleaseDate: Option<string>, publications: Publication[], contacts: Person[], studyDesignDescriptors: OntologyAnnotation[], tables: ArcTable[], datamap: Option<DataMap>, registeredAssayIdentifiers: string[], comments: Comment$[]): ArcStudy;
+    static create(identifier: string, title?: string, description?: string, submissionDate?: string, publicReleaseDate?: string, publications?: Publication[], contacts?: Person[], studyDesignDescriptors?: OntologyAnnotation[], tables?: ArcTable[], datamap?: Datamap, registeredAssayIdentifiers?: string[], comments?: Comment$[]): ArcStudy;
+    static make(identifier: string, title: Option<string>, description: Option<string>, submissionDate: Option<string>, publicReleaseDate: Option<string>, publications: Publication[], contacts: Person[], studyDesignDescriptors: OntologyAnnotation[], tables: ArcTable[], datamap: Option<Datamap>, registeredAssayIdentifiers: string[], comments: Comment$[]): ArcStudy;
     get isEmpty(): boolean;
     static get FileName(): string;
     get RegisteredAssayIdentifierCount(): int32;
@@ -209,7 +209,7 @@ export declare class ArcStudy extends ArcTables implements Iterable<ArcTable> {
     GetLightHashCode(): int32;
 }
 export declare function ArcStudy_$reflection(): TypeInfo;
-export declare function ArcStudy_$ctor_64321D5B(identifier: string, title?: string, description?: string, submissionDate?: string, publicReleaseDate?: string, publications?: Publication[], contacts?: Person[], studyDesignDescriptors?: OntologyAnnotation[], tables?: ArcTable[], datamap?: DataMap, registeredAssayIdentifiers?: string[], comments?: Comment$[]): ArcStudy;
+export declare function ArcStudy_$ctor_Z273F64C5(identifier: string, title?: string, description?: string, submissionDate?: string, publicReleaseDate?: string, publications?: Publication[], contacts?: Person[], studyDesignDescriptors?: OntologyAnnotation[], tables?: ArcTable[], datamap?: Datamap, registeredAssayIdentifiers?: string[], comments?: Comment$[]): ArcStudy;
 export declare class ArcWorkflow {
     "identifier@1151": string;
     investigation: Option<ArcInvestigation>;
@@ -221,12 +221,12 @@ export declare class ArcWorkflow {
     "version@1161": Option<string>;
     "parameters@1162": OntologyAnnotation[];
     "components@1163": Component[];
-    dataMap: Option<DataMap>;
+    "datamap@1164": Option<Datamap>;
     "contacts@1165": Person[];
     "cwlDescription@1166": Option<CWLProcessingUnit_$union>;
     "comments@1167": Comment$[];
     staticHash: int32;
-    constructor(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: OntologyAnnotation[], components?: Component[], datamap?: DataMap, contacts?: Person[], cwlDescription?: CWLProcessingUnit_$union, comments?: Comment$[]);
+    constructor(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: OntologyAnnotation[], components?: Component[], datamap?: Datamap, contacts?: Person[], cwlDescription?: CWLProcessingUnit_$union, comments?: Comment$[]);
     get Identifier(): string;
     set Identifier(i: string);
     get Investigation(): ArcInvestigation | undefined;
@@ -247,8 +247,8 @@ export declare class ArcWorkflow {
     set Parameters(p: OntologyAnnotation[]);
     get Components(): Component[];
     set Components(c: Component[]);
-    get DataMap(): DataMap | undefined;
-    set DataMap(dm: Option<DataMap>);
+    get Datamap(): Datamap | undefined;
+    set Datamap(dm: Option<Datamap>);
     get Contacts(): Person[];
     set Contacts(c: Person[]);
     get CWLDescription(): CWLProcessingUnit_$union | undefined;
@@ -258,8 +258,8 @@ export declare class ArcWorkflow {
     get StaticHash(): int32;
     set StaticHash(s: int32);
     static init(identifier: string): ArcWorkflow;
-    static create(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: OntologyAnnotation[], components?: Component[], datamap?: DataMap, contacts?: Person[], cwlDescription?: CWLProcessingUnit_$union, comments?: Comment$[]): ArcWorkflow;
-    static make(identifier: string, title: Option<string>, description: Option<string>, workflowType: Option<OntologyAnnotation>, uri: Option<string>, version: Option<string>, subWorkflowIdentifiers: string[], parameters: OntologyAnnotation[], components: Component[], datamap: Option<DataMap>, contacts: Person[], cwlDescription: Option<CWLProcessingUnit_$union>, comments: Comment$[]): ArcWorkflow;
+    static create(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: OntologyAnnotation[], components?: Component[], datamap?: Datamap, contacts?: Person[], cwlDescription?: CWLProcessingUnit_$union, comments?: Comment$[]): ArcWorkflow;
+    static make(identifier: string, title: Option<string>, description: Option<string>, workflowType: Option<OntologyAnnotation>, uri: Option<string>, version: Option<string>, subWorkflowIdentifiers: string[], parameters: OntologyAnnotation[], components: Component[], datamap: Option<Datamap>, contacts: Person[], cwlDescription: Option<CWLProcessingUnit_$union>, comments: Comment$[]): ArcWorkflow;
     static get FileName(): string;
     get SubWorkflowIdentifiersCount(): int32;
     get SubWorkflowCount(): int32;
@@ -287,7 +287,7 @@ export declare class ArcWorkflow {
     GetLightHashCode(): int32;
 }
 export declare function ArcWorkflow_$reflection(): TypeInfo;
-export declare function ArcWorkflow_$ctor_Z23038DB5(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: OntologyAnnotation[], components?: Component[], datamap?: DataMap, contacts?: Person[], cwlDescription?: CWLProcessingUnit_$union, comments?: Comment$[]): ArcWorkflow;
+export declare function ArcWorkflow_$ctor_Z5FF2D3D5(identifier: string, title?: string, description?: string, workflowType?: OntologyAnnotation, uri?: string, version?: string, subWorkflowIdentifiers?: string[], parameters?: OntologyAnnotation[], components?: Component[], datamap?: Datamap, contacts?: Person[], cwlDescription?: CWLProcessingUnit_$union, comments?: Comment$[]): ArcWorkflow;
 export declare class ArcRun extends ArcTables implements Iterable<ArcTable> {
     "identifier@1453": string;
     "title@1457": Option<string>;
@@ -297,13 +297,13 @@ export declare class ArcRun extends ArcTables implements Iterable<ArcTable> {
     "technologyType@1461": Option<OntologyAnnotation>;
     "technologyPlatform@1462": Option<OntologyAnnotation>;
     "workflowIdentifiers@1463-1": string[];
-    dataMap: Option<DataMap>;
+    "datamap@1464": Option<Datamap>;
     "performers@1465-1": Person[];
     "cwlDescription@1466": Option<CWLProcessingUnit_$union>;
     "cwlInput@1467-1": CWLParameterReference[];
     "comments@1468-1": Comment$[];
     staticHash: int32;
-    constructor(identifier: string, title?: string, description?: string, measurementType?: OntologyAnnotation, technologyType?: OntologyAnnotation, technologyPlatform?: OntologyAnnotation, workflowIdentifiers?: string[], tables?: ArcTable[], datamap?: DataMap, performers?: Person[], cwlDescription?: CWLProcessingUnit_$union, cwlInput?: CWLParameterReference[], comments?: Comment$[]);
+    constructor(identifier: string, title?: string, description?: string, measurementType?: OntologyAnnotation, technologyType?: OntologyAnnotation, technologyPlatform?: OntologyAnnotation, workflowIdentifiers?: string[], tables?: ArcTable[], datamap?: Datamap, performers?: Person[], cwlDescription?: CWLProcessingUnit_$union, cwlInput?: CWLParameterReference[], comments?: Comment$[]);
     get Identifier(): string;
     set Identifier(i: string);
     get Investigation(): ArcInvestigation | undefined;
@@ -320,8 +320,8 @@ export declare class ArcRun extends ArcTables implements Iterable<ArcTable> {
     set TechnologyPlatform(n: Option<OntologyAnnotation>);
     get WorkflowIdentifiers(): string[];
     set WorkflowIdentifiers(w: string[]);
-    get DataMap(): DataMap | undefined;
-    set DataMap(n: Option<DataMap>);
+    get Datamap(): Datamap | undefined;
+    set Datamap(n: Option<Datamap>);
     get Performers(): Person[];
     set Performers(n: Person[]);
     get CWLDescription(): CWLProcessingUnit_$union | undefined;
@@ -333,8 +333,8 @@ export declare class ArcRun extends ArcTables implements Iterable<ArcTable> {
     get StaticHash(): int32;
     set StaticHash(h: int32);
     static init(identifier: string): ArcRun;
-    static create(identifier: string, title?: string, description?: string, measurementType?: OntologyAnnotation, technologyType?: OntologyAnnotation, technologyPlatform?: OntologyAnnotation, workflowIdentifiers?: string[], tables?: ArcTable[], datamap?: DataMap, performers?: Person[], cwlDescription?: CWLProcessingUnit_$union, cwlInput?: CWLParameterReference[], comments?: Comment$[]): ArcRun;
-    static make(identifier: string, title: Option<string>, description: Option<string>, measurementType: Option<OntologyAnnotation>, technologyType: Option<OntologyAnnotation>, technologyPlatform: Option<OntologyAnnotation>, workflowIdentifiers: string[], tables: ArcTable[], datamap: Option<DataMap>, performers: Person[], cwlDescription: Option<CWLProcessingUnit_$union>, cwlInput: CWLParameterReference[], comments: Comment$[]): ArcRun;
+    static create(identifier: string, title?: string, description?: string, measurementType?: OntologyAnnotation, technologyType?: OntologyAnnotation, technologyPlatform?: OntologyAnnotation, workflowIdentifiers?: string[], tables?: ArcTable[], datamap?: Datamap, performers?: Person[], cwlDescription?: CWLProcessingUnit_$union, cwlInput?: CWLParameterReference[], comments?: Comment$[]): ArcRun;
+    static make(identifier: string, title: Option<string>, description: Option<string>, measurementType: Option<OntologyAnnotation>, technologyType: Option<OntologyAnnotation>, technologyPlatform: Option<OntologyAnnotation>, workflowIdentifiers: string[], tables: ArcTable[], datamap: Option<Datamap>, performers: Person[], cwlDescription: Option<CWLProcessingUnit_$union>, cwlInput: CWLParameterReference[], comments: Comment$[]): ArcRun;
     static get FileName(): string;
     get WorkflowIdentifierCount(): int32;
     get WorkflowCount(): int32;
@@ -385,7 +385,7 @@ export declare class ArcRun extends ArcTables implements Iterable<ArcTable> {
     GetHashCode(): int32;
 }
 export declare function ArcRun_$reflection(): TypeInfo;
-export declare function ArcRun_$ctor_Z8C211D(identifier: string, title?: string, description?: string, measurementType?: OntologyAnnotation, technologyType?: OntologyAnnotation, technologyPlatform?: OntologyAnnotation, workflowIdentifiers?: string[], tables?: ArcTable[], datamap?: DataMap, performers?: Person[], cwlDescription?: CWLProcessingUnit_$union, cwlInput?: CWLParameterReference[], comments?: Comment$[]): ArcRun;
+export declare function ArcRun_$ctor_287C1303(identifier: string, title?: string, description?: string, measurementType?: OntologyAnnotation, technologyType?: OntologyAnnotation, technologyPlatform?: OntologyAnnotation, workflowIdentifiers?: string[], tables?: ArcTable[], datamap?: Datamap, performers?: Person[], cwlDescription?: CWLProcessingUnit_$union, cwlInput?: CWLParameterReference[], comments?: Comment$[]): ArcRun;
 export declare class ArcInvestigation {
     "identifier@1951": string;
     "title@1952": Option<string>;