@nfdi4plants/arctrl 3.0.0-beta.12 → 3.0.0-beta.13

package/dist/ts/ts/CWL/WorkflowDescription.js

@@ -0,0 +1,80 @@
+import { defaultArg, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
+import { class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
+
+class CWLWorkflowDescription extends DynamicObj {
+  constructor(steps, inputs, outputs, cwlVersion, requirements, hints, metadata) {
+    super();
+    this._cwlVersion = defaultArg(cwlVersion, "v1.2");
+    this._steps = steps;
+    this._inputs = inputs;
+    this._outputs = outputs;
+    this._requirements = requirements;
+    this._hints = hints;
+    this._metadata = metadata;
+  }
+  get CWLVersion() {
+    const this$ = this;
+    return this$._cwlVersion;
+  }
+  set CWLVersion(version) {
+    const this$ = this;
+    this$._cwlVersion = version;
+  }
+  get Steps() {
+    const this$ = this;
+    return this$._steps;
+  }
+  set Steps(steps) {
+    const this$ = this;
+    this$._steps = steps;
+  }
+  get Inputs() {
+    const this$ = this;
+    return this$._inputs;
+  }
+  set Inputs(inputs) {
+    const this$ = this;
+    this$._inputs = inputs;
+  }
+  get Outputs() {
+    const this$ = this;
+    return this$._outputs;
+  }
+  set Outputs(outputs) {
+    const this$ = this;
+    this$._outputs = outputs;
+  }
+  get Requirements() {
+    const this$ = this;
+    return unwrap(this$._requirements);
+  }
+  set Requirements(requirements) {
+    const this$ = this;
+    this$._requirements = requirements;
+  }
+  get Hints() {
+    const this$ = this;
+    return unwrap(this$._hints);
+  }
+  set Hints(hints) {
+    const this$ = this;
+    this$._hints = hints;
+  }
+  get Metadata() {
+    const this$ = this;
+    return unwrap(this$._metadata);
+  }
+  set Metadata(metadata) {
+    const this$ = this;
+    this$._metadata = metadata;
+  }
+}
+function CWLWorkflowDescription_$reflection() {
+  return class_type("ARCtrl.CWL.CWLWorkflowDescription", void 0, CWLWorkflowDescription, DynamicObj_$reflection());
+}
+function CWLWorkflowDescription_$ctor_704BBD06(steps, inputs, outputs, cwlVersion, requirements, hints, metadata) {
+  return new CWLWorkflowDescription(steps, inputs, outputs, cwlVersion, requirements, hints, metadata);
+}
+
+export { CWLWorkflowDescription, CWLWorkflowDescription_$ctor_704BBD06, CWLWorkflowDescription_$reflection };

package/dist/ts/ts/CWL/WorkflowSteps.d.ts

@@ -0,0 +1,45 @@
+import { Record } from '@fable-org/fable-library-js/Types.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { IComparable, IEquatable } from '@fable-org/fable-library-js/Util.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+import { Requirement_$union } from './Requirements.js';
+import { DynamicObj } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
+export declare class StepInput extends Record implements IEquatable<StepInput>, IComparable<StepInput> {
+    readonly Id: string;
+    readonly Source: Option<string>;
+    readonly DefaultValue: Option<string>;
+    readonly ValueFrom: Option<string>;
+    constructor(Id: string, Source: Option<string>, DefaultValue: Option<string>, ValueFrom: Option<string>);
+    static create(id: string, source?: string, defaultValue?: string, valueFrom?: string): StepInput;
+}
+export declare function StepInput_$reflection(): TypeInfo;
+export declare class StepOutput extends Record implements IEquatable<StepOutput> {
+    readonly Id: string[];
+    constructor(Id: string[]);
+    static create(id: string[]): StepOutput;
+}
+export declare function StepOutput_$reflection(): TypeInfo;
+export declare class WorkflowStep extends DynamicObj {
+    _id: string;
+    _in: StepInput[];
+    _out: StepOutput;
+    _run: string;
+    _requirements: Option<Requirement_$union[]>;
+    _hints: Option<Requirement_$union[]>;
+    constructor(id: string, in_: StepInput[], out_: StepOutput, run: string, requirements?: Requirement_$union[], hints?: Requirement_$union[]);
+    get Id(): string;
+    set Id(id: string);
+    get In(): StepInput[];
+    set In(in_: StepInput[]);
+    get Out(): StepOutput;
+    set Out(out_: StepOutput);
+    get Run(): string;
+    set Run(run: string);
+    get Requirements(): Requirement_$union[] | undefined;
+    set Requirements(requirements: Option<Requirement_$union[]>);
+    get Hints(): Requirement_$union[] | undefined;
+    set Hints(hints: Option<Requirement_$union[]>);
+}
+export declare function WorkflowStep_$reflection(): TypeInfo;
+export declare function WorkflowStep_$ctor_4159DCB0(id: string, in_: StepInput[], out_: StepOutput, run: string, requirements?: Requirement_$union[], hints?: Requirement_$union[]): WorkflowStep;
+//# sourceMappingURL=WorkflowSteps.d.ts.map

package/dist/ts/ts/CWL/WorkflowSteps.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"WorkflowSteps.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/CWL/WorkflowSteps.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,sCAAsC,CAAC;AAC9D,OAAO,EAAU,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACvE,OAAO,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAC9E,OAAO,EAAiE,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AACpI,OAAO,EAAE,kBAAkB,EAAE,MAAM,mBAAmB,CAAC;AACvD,OAAO,EAA0B,UAAU,EAAE,MAAM,oDAAoD,CAAC;AAExG,qBAAa,SAAU,SAAQ,MAAO,YAAW,UAAU,CAAC,SAAS,CAAC,EAAE,WAAW,CAAC,SAAS,CAAC;IAC1F,QAAQ,CAAC,EAAE,EAAE,MAAM,CAAC;IACpB,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IAChC,QAAQ,CAAC,YAAY,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IACtC,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;gBACvB,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,YAAY,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,SAAS,EAAE,MAAM,CAAC,MAAM,CAAC;IAOvG,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,EAAE,YAAY,CAAC,EAAE,MAAM,EAAE,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS;CAGnG;AAED,wBAAgB,qBAAqB,IAAI,QAAQ,CAEhD;AAED,qBAAa,UAAW,SAAQ,MAAO,YAAW,UAAU,CAAC,UAAU,CAAC;IACpE,QAAQ,CAAC,EAAE,EAAE,MAAM,EAAE,CAAC;gBACV,EAAE,EAAE,MAAM,EAAE;IAIxB,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,MAAM,EAAE,GAAG,UAAU;CAG1C;AAED,wBAAgB,sBAAsB,IAAI,QAAQ,CAEjD;AAED,qBAAa,YAAa,SAAQ,UAAU;IACxC,GAAG,EAAE,MAAM,CAAC;IACZ,GAAG,EAAE,SAAS,EAAE,CAAC;IACjB,IAAI,EAAE,UAAU,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,EAAE,MAAM,CAAC,kBAAkB,EAAE,CAAC,CAAC;IAC5C,MAAM,EAAE,MAAM,CAAC,kBAAkB,EAAE,CAAC,CAAC;gBACzB,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,IAAI,EAAE,UAAU,EAAE,GAAG,EAAE,MAAM,EAAE,YAAY,CAAC,EAAE,kBAAkB,EAAE,EAAE,KAAK,CAAC,EAAE,kBAAkB,EAAE;IAS1I,IAAI,EAAE,IAAI,MAAM,CAGf;IACD,IAAI,EAAE,CAAC,EAAE,EAAE,MAAM,EAGhB;IACD,IAAI,EAAE,IAAI,SAAS,EAAE,CAGpB;IACD,IAAI,EAAE,CAAC,GAAG,EAAE,SAAS,EAAE,EAGtB;IACD,IAAI,GAAG,IAAI,UAAU,CAGpB;IACD,IAAI,GAAG,CAAC,IAAI,EAAE,UAAU,EAGvB;IACD,IAAI,GAAG,IAAI,MAAM,CAGhB;IACD,IAAI,GAAG,CAAC,GAAG,EAAE,MAAM,EAGlB;IACD,IAAI,YAAY,IAAI,kBAAkB,EAAE,GAAG,SAAS,CAGnD;IACD,IAAI,YAAY,CAAC,YAAY,EAAE,MAAM,CAAC,kBAAkB,EAAE,CAAC,EAG1D;IACD,IAAI,KAAK,IAAI,kBAAkB,EAAE,GAAG,SAAS,CAG5C;IACD,IAAI,KAAK,CAAC,KAAK,EAAE,MAAM,CAAC,kBAAkB,EAAE,CAAC,EAG5C;CACJ;AAED,wBAAgB,wBAAwB,IAAI,QAAQ,CAEnD;AAED,wBAAgB,2BAA2B,CAAC,EAAE,EAAE,MAAM,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,IAAI,EAAE,UAAU,EAAE,GAAG,EAAE,MAAM,EAAE,YAAY,CAAC,EAAE,kBAAkB,EAAE,EAAE,KAAK,CAAC,EAAE,kBAAkB,EAAE,GAAG,YAAY,CAExL"}

package/dist/ts/ts/CWL/WorkflowSteps.js

@@ -0,0 +1,99 @@
+import { Record } from '../../node_modules/@fable-org/fable-library-js/Types.js';
+import { unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { record_type, string_type, option_type, array_type, class_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
+import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
+
+class StepInput extends Record {
+  constructor(Id, Source, DefaultValue, ValueFrom) {
+    super();
+    this.Id = Id;
+    this.Source = Source;
+    this.DefaultValue = DefaultValue;
+    this.ValueFrom = ValueFrom;
+  }
+  static create(id, source, defaultValue, valueFrom) {
+    return new StepInput(id, source, defaultValue, valueFrom);
+  }
+}
+function StepInput_$reflection() {
+  return record_type("ARCtrl.CWL.StepInput", [], StepInput, () => [["Id", string_type], ["Source", option_type(string_type)], ["DefaultValue", option_type(string_type)], ["ValueFrom", option_type(string_type)]]);
+}
+class StepOutput extends Record {
+  constructor(Id) {
+    super();
+    this.Id = Id;
+  }
+  static create(id) {
+    return new StepOutput(id);
+  }
+}
+function StepOutput_$reflection() {
+  return record_type("ARCtrl.CWL.StepOutput", [], StepOutput, () => [["Id", array_type(string_type)]]);
+}
+class WorkflowStep extends DynamicObj {
+  constructor(id, in_, out_, run, requirements, hints) {
+    super();
+    this._id = id;
+    this._in = in_;
+    this._out = out_;
+    this._run = run;
+    this._requirements = requirements;
+    this._hints = hints;
+  }
+  get Id() {
+    const this$ = this;
+    return this$._id;
+  }
+  set Id(id) {
+    const this$ = this;
+    this$._id = id;
+  }
+  get In() {
+    const this$ = this;
+    return this$._in;
+  }
+  set In(in_) {
+    const this$ = this;
+    this$._in = in_;
+  }
+  get Out() {
+    const this$ = this;
+    return this$._out;
+  }
+  set Out(out_) {
+    const this$ = this;
+    this$._out = out_;
+  }
+  get Run() {
+    const this$ = this;
+    return this$._run;
+  }
+  set Run(run) {
+    const this$ = this;
+    this$._run = run;
+  }
+  get Requirements() {
+    const this$ = this;
+    return unwrap(this$._requirements);
+  }
+  set Requirements(requirements) {
+    const this$ = this;
+    this$._requirements = requirements;
+  }
+  get Hints() {
+    const this$ = this;
+    return unwrap(this$._hints);
+  }
+  set Hints(hints) {
+    const this$ = this;
+    this$._hints = hints;
+  }
+}
+function WorkflowStep_$reflection() {
+  return class_type("ARCtrl.CWL.WorkflowStep", void 0, WorkflowStep, DynamicObj_$reflection());
+}
+function WorkflowStep_$ctor_4159DCB0(id, in_, out_, run, requirements, hints) {
+  return new WorkflowStep(id, in_, out_, run, requirements, hints);
+}
+
+export { StepInput, StepInput_$reflection, StepOutput, StepOutput_$reflection, WorkflowStep, WorkflowStep_$ctor_4159DCB0, WorkflowStep_$reflection };

package/dist/ts/ts/Contract/ARC.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ARC.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ARC.ts"],"names":[],"mappings":"AAEA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAQzC;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,QAAQ,CAAC,CAoDzE"}
+{"version":3,"file":"ARC.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ARC.ts"],"names":[],"mappings":"AAEA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAQzC;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,QAAQ,CAAC,CAyEzE"}

package/dist/ts/ts/Contract/ARC.js

@@ -4,8 +4,8 @@ import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js'
 import { Contract } from './Contract.js';
 import { $007CAssayPath$007C_$007C } from './ArcAssay.js';
 import { $007CStudyPath$007C_$007C } from './ArcStudy.js';
-import { $007CWorkflowPath$007C_$007C } from './ArcWorkflow.js';
-import { $007CRunPath$007C_$007C } from './ArcRun.js';
+import { $007CWorkflowPath$007C_$007C, $007CWorkflowCWLPath$007C_$007C } from './ArcWorkflow.js';
+import { $007CRunPath$007C_$007C, $007CRunCWLPath$007C_$007C, $007CRunYMLPath$007C_$007C } from './ArcRun.js';
 import { $007CDatamapPath$007C_$007C } from './Datamap.js';
 import { LicenseContractExtensions_$007CLicensePath$007C_$007C } from './License.js';
 
@@ -31,22 +31,40 @@ function tryISAReadContractFromPath(path) {
           const p_3 = value(activePatternResult_3);
           return Contract.createRead(p_3, "ISA_Workflow");
         } else {
-          const activePatternResult_4 = $007CRunPath$007C_$007C(split$1);
+          const activePatternResult_4 = $007CWorkflowCWLPath$007C_$007C(split$1);
           if (activePatternResult_4 != null) {
             const p_4 = value(activePatternResult_4);
-            return Contract.createRead(p_4, "ISA_Run");
+            return Contract.createRead(p_4, "CWL");
           } else {
-            const activePatternResult_5 = $007CDatamapPath$007C_$007C(split$1);
+            const activePatternResult_5 = $007CRunPath$007C_$007C(split$1);
             if (activePatternResult_5 != null) {
               const p_5 = value(activePatternResult_5);
-              return Contract.createRead(p_5, "ISA_Datamap");
+              return Contract.createRead(p_5, "ISA_Run");
             } else {
-              const activePatternResult_6 = LicenseContractExtensions_$007CLicensePath$007C_$007C(split$1);
+              const activePatternResult_6 = $007CRunCWLPath$007C_$007C(split$1);
               if (activePatternResult_6 != null) {
                 const p_6 = value(activePatternResult_6);
-                return Contract.createRead(p_6, "PlainText");
+                return Contract.createRead(p_6, "CWL");
               } else {
-                return void 0;
+                const activePatternResult_7 = $007CRunYMLPath$007C_$007C(split$1);
+                if (activePatternResult_7 != null) {
+                  const p_7 = value(activePatternResult_7);
+                  return Contract.createRead(p_7, "YAML");
+                } else {
+                  const activePatternResult_8 = $007CDatamapPath$007C_$007C(split$1);
+                  if (activePatternResult_8 != null) {
+                    const p_8 = value(activePatternResult_8);
+                    return Contract.createRead(p_8, "ISA_Datamap");
+                  } else {
+                    const activePatternResult_9 = LicenseContractExtensions_$007CLicensePath$007C_$007C(split$1);
+                    if (activePatternResult_9 != null) {
+                      const p_9 = value(activePatternResult_9);
+                      return Contract.createRead(p_9, "PlainText");
+                    } else {
+                      return void 0;
+                    }
+                  }
+                }
               }
             }
           }

package/dist/ts/ts/Contract/ArcRun.d.ts

@@ -1,7 +1,11 @@
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { Contract } from './Contract.js';
 import { ArcRun } from '../Core/ArcTypes.js';
+import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.js';
+import { CWLParameterReference } from '../CWL/ParameterReference.js';
 export declare function $007CRunPath$007C_$007C(input: string[]): Option<string>;
+export declare function $007CRunCWLPath$007C_$007C(input: string[]): Option<string>;
+export declare function $007CRunYMLPath$007C_$007C(input: string[]): Option<string>;
 export declare function ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(this$: ArcRun, WithFolder: Option<boolean>): Contract[];
 export declare function ARCtrl_ArcRun__ArcRun_ToUpdateContract(this$: ArcRun): Contract;
 export declare function ARCtrl_ArcRun__ArcRun_ToDeleteContract(this$: ArcRun): Contract;
@@ -9,4 +13,6 @@ export declare function ARCtrl_ArcRun__ArcRun_toDeleteContract_Static_Z3EFAF6F8(
 export declare function ARCtrl_ArcRun__ArcRun_toCreateContract_Static_Z71974BBF(run: ArcRun, WithFolder?: boolean): Contract[];
 export declare function ARCtrl_ArcRun__ArcRun_toUpdateContract_Static_Z3EFAF6F8(run: ArcRun): Contract;
 export declare function ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcRun>;
+export declare function ARCtrl_ArcRun__ArcRun_tryCWLFromReadContract_Static(runIdentifier: string, c: Contract): Option<CWLProcessingUnit_$union>;
+export declare function ARCtrl_ArcRun__ArcRun_tryYMLFromReadContract_Static(runIdentifier: string, c: Contract): Option<CWLParameterReference[]>;
 //# sourceMappingURL=ArcRun.d.ts.map

package/dist/ts/ts/Contract/ArcRun.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ArcRun.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcRun.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAG7C,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BvE;AAED,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQtH;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAErH;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,yDAAyD,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,CA8BrG"}
+{"version":3,"file":"ArcRun.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcRun.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAKzC,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAG7C,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AACvE,OAAO,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AAErE,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BvE;AAED,wBAAgB,0BAA0B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B1E;AAED,wBAAgB,0BAA0B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B1E;AAED,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAWtH;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAErH;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,yDAAyD,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,CA8BrG;AAED,wBAAgB,mDAAmD,CAAC,aAAa,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,wBAAwB,CAAC,CA0CxI;AAED,wBAAgB,mDAAmD,CAAC,aAAa,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,qBAAqB,EAAE,CAAC,CA0CvI"}

package/dist/ts/ts/Contract/ArcRun.js

@@ -1,12 +1,14 @@
 import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
 import { combineMany, getRunFolderPath } from '../FileSystem/Path.js';
 import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
-import { defaultArg, unwrap, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
-import { Run_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
+import { defaultArg, value, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Run_fileNameFromIdentifier, Run_cwlFileNameFromIdentifier, Run_ymlFileNameFromIdentifier } from '../Core/Helper/Identifier.js';
 import { Contract } from './Contract.js';
 import { ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8, ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D } from '../Spreadsheet/ArcRun.js';
 import { toArray, delay, append, collect, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
+import { encodeProcessingUnit } from '../CWL/Encode.js';
+import { Decode_decodeCWLProcessingUnit, DecodeParameters_decodeYAMLParameterFile } from '../CWL/Decode.js';
 
 function $007CRunPath$007C_$007C(input) {
   let matchResult;
@@ -32,13 +34,64 @@ function $007CRunPath$007C_$007C(input) {
       return void 0;
   }
 }
+function $007CRunCWLPath$007C_$007C(input) {
+  let matchResult;
+  if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
+    if (item(0, input) === "runs") {
+      if (item(2, input) === "run.cwl") {
+        matchResult = 0;
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0: {
+      const anyRunName = item(1, input);
+      return combineMany(input);
+    }
+    default:
+      return void 0;
+  }
+}
+function $007CRunYMLPath$007C_$007C(input) {
+  let matchResult;
+  if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
+    if (item(0, input) === "runs") {
+      if (item(2, input) === "run.yml") {
+        matchResult = 0;
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0: {
+      const anyRunName = item(1, input);
+      return combineMany(input);
+    }
+    default:
+      return void 0;
+  }
+}
 function ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(this$, WithFolder) {
   const withFolder = defaultArg(WithFolder, false);
   const path = Run_fileNameFromIdentifier(this$.Identifier);
   const c = Contract.createCreate(path, "ISA_Run", ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(this$));
   return toArray(delay(() => {
     let folderFS;
-    return append(withFolder ? (folderFS = FileSystemTree.createRunsFolder([FileSystemTree.createRunFolder(this$.Identifier)]), collect((p) => p !== path && p !== "runs/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
+    return append(withFolder ? (folderFS = FileSystemTree.createRunsFolder([FileSystemTree.createRunFolder(this$.Identifier)]), collect((p) => p !== path && p !== "runs/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => {
+      let path_1, dto;
+      return append(this$.CWLDescription != null ? (path_1 = Run_cwlFileNameFromIdentifier(this$.Identifier), dto = encodeProcessingUnit(value(this$.CWLDescription)), singleton(Contract.createCreate(path_1, "CWL", dto))) : empty(), delay(() => singleton(c)));
+    }));
   }));
 }
 function ARCtrl_ArcRun__ArcRun_ToUpdateContract(this$) {
@@ -85,5 +138,79 @@ function ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F(c) {
       return void 0;
   }
 }
+function ARCtrl_ArcRun__ArcRun_tryCWLFromReadContract_Static(runIdentifier, c) {
+  let text;
+  const p = Run_cwlFileNameFromIdentifier(runIdentifier);
+  let matchResult, text_1;
+  if (c.Operation === "READ") {
+    if (c.DTOType != null) {
+      if (value(c.DTOType) === "CWL") {
+        if (c.DTO != null) {
+          if (typeof value(c.DTO) === "string") {
+            if (text = value(c.DTO), c.Path === p) {
+              matchResult = 0;
+              text_1 = value(c.DTO);
+            } else {
+              matchResult = 1;
+            }
+          } else {
+            matchResult = 1;
+          }
+        } else {
+          matchResult = 1;
+        }
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return Decode_decodeCWLProcessingUnit(text_1);
+    default:
+      return void 0;
+  }
+}
+function ARCtrl_ArcRun__ArcRun_tryYMLFromReadContract_Static(runIdentifier, c) {
+  let text;
+  const p = Run_ymlFileNameFromIdentifier(runIdentifier);
+  let matchResult, text_1;
+  if (c.Operation === "READ") {
+    if (c.DTOType != null) {
+      if (value(c.DTOType) === "YAML") {
+        if (c.DTO != null) {
+          if (typeof value(c.DTO) === "string") {
+            if (text = value(c.DTO), c.Path === p) {
+              matchResult = 0;
+              text_1 = value(c.DTO);
+            } else {
+              matchResult = 1;
+            }
+          } else {
+            matchResult = 1;
+          }
+        } else {
+          matchResult = 1;
+        }
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return DecodeParameters_decodeYAMLParameterFile(text_1);
+    default:
+      return void 0;
+  }
+}
 
-export { $007CRunPath$007C_$007C, ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49, ARCtrl_ArcRun__ArcRun_ToDeleteContract, ARCtrl_ArcRun__ArcRun_ToUpdateContract, ARCtrl_ArcRun__ArcRun_toCreateContract_Static_Z71974BBF, ARCtrl_ArcRun__ArcRun_toDeleteContract_Static_Z3EFAF6F8, ARCtrl_ArcRun__ArcRun_toUpdateContract_Static_Z3EFAF6F8, ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F };
+export { $007CRunCWLPath$007C_$007C, $007CRunPath$007C_$007C, $007CRunYMLPath$007C_$007C, ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49, ARCtrl_ArcRun__ArcRun_ToDeleteContract, ARCtrl_ArcRun__ArcRun_ToUpdateContract, ARCtrl_ArcRun__ArcRun_toCreateContract_Static_Z71974BBF, ARCtrl_ArcRun__ArcRun_toDeleteContract_Static_Z3EFAF6F8, ARCtrl_ArcRun__ArcRun_toUpdateContract_Static_Z3EFAF6F8, ARCtrl_ArcRun__ArcRun_tryCWLFromReadContract_Static, ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F, ARCtrl_ArcRun__ArcRun_tryYMLFromReadContract_Static };

package/dist/ts/ts/Contract/ArcWorkflow.d.ts

@@ -1,7 +1,9 @@
 import { Option } from '@fable-org/fable-library-js/Option.js';
 import { Contract } from './Contract.js';
 import { ArcWorkflow } from '../Core/ArcTypes.js';
+import { CWLProcessingUnit_$union } from '../CWL/CWLProcessingUnit.js';
 export declare function $007CWorkflowPath$007C_$007C(input: string[]): Option<string>;
+export declare function $007CWorkflowCWLPath$007C_$007C(input: string[]): Option<string>;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$: ArcWorkflow, WithFolder: Option<boolean>): Contract[];
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$: ArcWorkflow): Contract;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract(this$: ArcWorkflow): Contract;
@@ -9,4 +11,5 @@ export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toDeleteContract_Static_
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toCreateContract_Static_3B1E4D7B(workflow: ArcWorkflow, WithFolder?: boolean): Contract[];
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toUpdateContract_Static_Z1C75CB0E(workflow: ArcWorkflow): Contract;
 export declare function ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcWorkflow>;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_tryCWLFromReadContract_Static(workflowIdentifier: string, c: Contract): Option<CWLProcessingUnit_$union>;
 //# sourceMappingURL=ArcWorkflow.d.ts.map

package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ArcWorkflow.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcWorkflow.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAGlD,wBAAgB,4BAA4B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B5E;AAED,wBAAgB,yDAAyD,CAAC,KAAK,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQrI;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,gEAAgE,CAAC,QAAQ,EAAE,WAAW,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAExI;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,mEAAmE,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,CA8BpH"}
+{"version":3,"file":"ArcWorkflow.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcWorkflow.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAKzC,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAGlD,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AAEvE,wBAAgB,4BAA4B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B5E;AAED,wBAAgB,+BAA+B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B/E;AAED,wBAAgB,yDAAyD,CAAC,KAAK,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAWrI;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,gEAAgE,CAAC,QAAQ,EAAE,WAAW,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAExI;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,mEAAmE,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,CA8BpH;AAED,wBAAgB,6DAA6D,CAAC,kBAAkB,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,wBAAwB,CAAC,CA0CvJ"}

package/dist/ts/ts/Contract/ArcWorkflow.js

@@ -1,12 +1,14 @@
 import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
 import { combineMany, getWorkflowFolderPath } from '../FileSystem/Path.js';
 import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
-import { defaultArg, unwrap, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
-import { Workflow_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
+import { defaultArg, value, unwrap } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Workflow_fileNameFromIdentifier, Workflow_cwlFileNameFromIdentifier } from '../Core/Helper/Identifier.js';
 import { Contract } from './Contract.js';
 import { ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E, ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D } from '../Spreadsheet/ArcWorkflow.js';
 import { toArray, delay, append, collect, singleton, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
 import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
+import { encodeProcessingUnit } from '../CWL/Encode.js';
+import { Decode_decodeCWLProcessingUnit } from '../CWL/Decode.js';
 
 function $007CWorkflowPath$007C_$007C(input) {
   let matchResult;
@@ -32,13 +34,40 @@ function $007CWorkflowPath$007C_$007C(input) {
       return void 0;
   }
 }
+function $007CWorkflowCWLPath$007C_$007C(input) {
+  let matchResult;
+  if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
+    if (item(0, input) === "workflows") {
+      if (item(2, input) === "workflow.cwl") {
+        matchResult = 0;
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0: {
+      const anyWorkflowName = item(1, input);
+      return combineMany(input);
+    }
+    default:
+      return void 0;
+  }
+}
 function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$, WithFolder) {
   const withFolder = defaultArg(WithFolder, false);
   const path = Workflow_fileNameFromIdentifier(this$.Identifier);
   const c = Contract.createCreate(path, "ISA_Workflow", ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(this$));
   return toArray(delay(() => {
     let folderFS;
-    return append(withFolder ? (folderFS = FileSystemTree.createWorkflowsFolder([FileSystemTree.createWorkflowFolder(this$.Identifier)]), collect((p) => p !== path && p !== "workflows/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
+    return append(withFolder ? (folderFS = FileSystemTree.createWorkflowsFolder([FileSystemTree.createWorkflowFolder(this$.Identifier)]), collect((p) => p !== path && p !== "workflows/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => {
+      let path_1, dto;
+      return append(this$.CWLDescription != null ? (path_1 = Workflow_cwlFileNameFromIdentifier(this$.Identifier), dto = encodeProcessingUnit(value(this$.CWLDescription)), singleton(Contract.createCreate(path_1, "CWL", dto))) : empty(), delay(() => singleton(c)));
+    }));
   }));
 }
 function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$) {
@@ -85,5 +114,42 @@ function ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F(c)
       return void 0;
   }
 }
+function ARCtrl_ArcWorkflow__ArcWorkflow_tryCWLFromReadContract_Static(workflowIdentifier, c) {
+  let cwl;
+  const p = Workflow_cwlFileNameFromIdentifier(workflowIdentifier);
+  let matchResult, cwl_1;
+  if (c.Operation === "READ") {
+    if (c.DTOType != null) {
+      if (value(c.DTOType) === "CWL") {
+        if (c.DTO != null) {
+          if (typeof value(c.DTO) === "string") {
+            if (cwl = value(c.DTO), c.Path === p) {
+              matchResult = 0;
+              cwl_1 = value(c.DTO);
+            } else {
+              matchResult = 1;
+            }
+          } else {
+            matchResult = 1;
+          }
+        } else {
+          matchResult = 1;
+        }
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return Decode_decodeCWLProcessingUnit(cwl_1);
+    default:
+      return void 0;
+  }
+}
 
-export { $007CWorkflowPath$007C_$007C, ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49, ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract, ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract, ARCtrl_ArcWorkflow__ArcWorkflow_toCreateContract_Static_3B1E4D7B, ARCtrl_ArcWorkflow__ArcWorkflow_toDeleteContract_Static_Z1C75CB0E, ARCtrl_ArcWorkflow__ArcWorkflow_toUpdateContract_Static_Z1C75CB0E, ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F };
+export { $007CWorkflowCWLPath$007C_$007C, $007CWorkflowPath$007C_$007C, ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49, ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract, ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract, ARCtrl_ArcWorkflow__ArcWorkflow_toCreateContract_Static_3B1E4D7B, ARCtrl_ArcWorkflow__ArcWorkflow_toDeleteContract_Static_Z1C75CB0E, ARCtrl_ArcWorkflow__ArcWorkflow_toUpdateContract_Static_Z1C75CB0E, ARCtrl_ArcWorkflow__ArcWorkflow_tryCWLFromReadContract_Static, ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F };

package/dist/ts/ts/ContractIO/ContractIO.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ContractIO.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/ContractIO/ContractIO.ts"],"names":[],"mappings":"AAEA,OAAO,EAAqB,qBAAqB,EAAwB,MAAM,uCAAuC,CAAC;AACvH,OAAO,EAAoC,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AAWrF,wBAAgB,wBAAwB,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAgDxH;AAED,wBAAgB,4BAA4B,CAAC,SAAS,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,QAAQ,KAAK,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,QAAQ,EAAE,MAAM,EAAE,EAAE,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC,CA+BpO;AAED,wBAAgB,yBAAyB,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAwBzH;AAED,wBAAgB,0BAA0B,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAwB1H;AAED,wBAAgB,2BAA2B,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAwC3H;AAED,wBAAgB,2BAA2B,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAW3H;AAED,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAQhH;AAED,wBAAgB,0BAA0B,CAAC,QAAQ,EAAE,MAAM,EAAE,EAAE,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC,CAEjI"}
+{"version":3,"file":"ContractIO.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/ContractIO/ContractIO.ts"],"names":[],"mappings":"AAEA,OAAO,EAAqB,qBAAqB,EAAwB,MAAM,uCAAuC,CAAC;AACvH,OAAO,EAAoC,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AAWrF,wBAAgB,wBAAwB,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAkDxH;AAED,wBAAgB,4BAA4B,CAAC,SAAS,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,QAAQ,KAAK,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAAC,EAAE,QAAQ,EAAE,MAAM,EAAE,EAAE,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC,CA+BpO;AAED,wBAAgB,yBAAyB,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAwBzH;AAED,wBAAgB,0BAA0B,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAwB1H;AAED,wBAAgB,2BAA2B,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAwC3H;AAED,wBAAgB,2BAA2B,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAW3H;AAED,wBAAgB,gBAAgB,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,EAAE,QAAQ,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,CAQhH;AAED,wBAAgB,0BAA0B,CAAC,QAAQ,EAAE,MAAM,EAAE,EAAE,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,qBAAqB,CAAC,QAAQ,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC,CAEjI"}

package/dist/ts/ts/ContractIO/ContractIO.js

@@ -28,7 +28,9 @@ function fulfillReadContractAsync(basePath, c) {
           matchResult = 0;
           break;
         }
-        case "PlainText": {
+        case "PlainText":
+        case "CWL":
+        case "YAML": {
           matchResult = 1;
           break;
         }

package/dist/ts/ts/Conversion/Assay.d.ts

@@ -0,0 +1,13 @@
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+import { LDGraph, LDNode } from '../ROCrate/LDObject.js';
+import { LDContext } from '../ROCrate/LDContext.js';
+import { ArcAssay } from '../Core/ArcTypes.js';
+import { FileSystem } from '../FileSystem/FileSystem.js';
+export declare class AssayConversion {
+    constructor();
+}
+export declare function AssayConversion_$reflection(): TypeInfo;
+export declare function AssayConversion_getDataFilesFromProcesses_6BABD1B0(processes: LDNode[], fragmentDescriptors?: LDNode[], graph?: LDGraph, context?: LDContext): LDNode[];
+export declare function AssayConversion_composeAssay_Z5C53FD5C(assay: ArcAssay, fs?: FileSystem): LDNode;
+export declare function AssayConversion_decomposeAssay_Z6839B9E8(assay: LDNode, graph?: LDGraph, context?: LDContext): ArcAssay;
+//# sourceMappingURL=Assay.d.ts.map

package/dist/ts/ts/Conversion/Assay.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Assay.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Conversion/Assay.ts"],"names":[],"mappings":"AAAA,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAIjF,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAKzD,OAAO,EAAE,SAAS,EAAE,MAAM,yBAAyB,CAAC;AAUpD,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAGzD,qBAAa,eAAe;;CAG3B;AAED,wBAAgB,2BAA2B,IAAI,QAAQ,CAEtD;AAED,wBAAgB,kDAAkD,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,mBAAmB,CAAC,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,MAAM,EAAE,CAkBtK;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,QAAQ,EAAE,EAAE,CAAC,EAAE,UAAU,GAAG,MAAM,CAY/F;AAED,wBAAgB,wCAAwC,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC,EAAE,SAAS,GAAG,QAAQ,CAWtH"}