@nfdi4plants/arctrl 3.0.0-beta.11 → 3.0.0-beta.13

package/dist/ts/ts/CWL/CWLTypes.js

@@ -0,0 +1,173 @@
+import { identityHash, defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { DynamicObj, DynamicObj_$reflection } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
+import { class_type, record_type, string_type, option_type, bool_type, union_type, array_type } from '../../node_modules/@fable-org/fable-library-js/Reflection.js';
+import { Record, Union, FSharpRef } from '../../node_modules/@fable-org/fable-library-js/Types.js';
+import { setProperty } from '../fable_modules/DynamicObj.7.1.0/DynObj.fs.js';
+
+class FileInstance extends DynamicObj {
+  constructor() {
+    super();
+  }
+  GetHashCode() {
+    const this$ = this;
+    return identityHash(this$.DeepCopyProperties()) | 0;
+  }
+  Equals(o) {
+    let o_1;
+    const this$ = this;
+    return o instanceof FileInstance && (o_1 = o, this$.StructurallyEquals(o_1));
+  }
+}
+function FileInstance_$reflection() {
+  return class_type("ARCtrl.CWL.FileInstance", void 0, FileInstance, DynamicObj_$reflection());
+}
+function FileInstance_$ctor() {
+  return new FileInstance();
+}
+class DirectoryInstance extends DynamicObj {
+  constructor() {
+    super();
+  }
+  Equals(o) {
+    let o_1;
+    const this$ = this;
+    return o instanceof DirectoryInstance && (o_1 = o, this$.StructurallyEquals(o_1));
+  }
+  GetHashCode() {
+    const this$ = this;
+    return identityHash(this$.DeepCopyProperties()) | 0;
+  }
+}
+function DirectoryInstance_$reflection() {
+  return class_type("ARCtrl.CWL.DirectoryInstance", void 0, DirectoryInstance, DynamicObj_$reflection());
+}
+function DirectoryInstance_$ctor() {
+  return new DirectoryInstance();
+}
+class DirentInstance extends Record {
+  constructor(Entry, Entryname, Writable) {
+    super();
+    this.Entry = Entry;
+    this.Entryname = Entryname;
+    this.Writable = Writable;
+  }
+}
+function DirentInstance_$reflection() {
+  return record_type("ARCtrl.CWL.DirentInstance", [], DirentInstance, () => [["Entry", string_type], ["Entryname", option_type(string_type)], ["Writable", option_type(bool_type)]]);
+}
+function CWLType_File(Item) {
+  return new CWLType(0, [Item]);
+}
+function CWLType_Directory(Item) {
+  return new CWLType(1, [Item]);
+}
+function CWLType_Dirent(Item) {
+  return new CWLType(2, [Item]);
+}
+function CWLType_String() {
+  return new CWLType(3, []);
+}
+function CWLType_Int() {
+  return new CWLType(4, []);
+}
+function CWLType_Long() {
+  return new CWLType(5, []);
+}
+function CWLType_Float() {
+  return new CWLType(6, []);
+}
+function CWLType_Double() {
+  return new CWLType(7, []);
+}
+function CWLType_Boolean() {
+  return new CWLType(8, []);
+}
+function CWLType_Stdout() {
+  return new CWLType(9, []);
+}
+function CWLType_Null() {
+  return new CWLType(10, []);
+}
+function CWLType_Array(Item) {
+  return new CWLType(11, [Item]);
+}
+class CWLType extends Union {
+  constructor(tag, fields) {
+    super();
+    this.tag = tag;
+    this.fields = fields;
+  }
+  cases() {
+    return ["File", "Directory", "Dirent", "String", "Int", "Long", "Float", "Double", "Boolean", "Stdout", "Null", "Array"];
+  }
+}
+function CWLType_$reflection() {
+  return union_type("ARCtrl.CWL.CWLType", [], CWLType, () => [[["Item", FileInstance_$reflection()]], [["Item", DirectoryInstance_$reflection()]], [["Item", DirentInstance_$reflection()]], [], [], [], [], [], [], [], [], [["Item", CWLType_$reflection()]]]);
+}
+function CWLType_file() {
+  return CWLType_File(FileInstance_$ctor());
+}
+function CWLType_directory() {
+  return CWLType_Directory(DirectoryInstance_$ctor());
+}
+class InputRecordSchema extends DynamicObj {
+  constructor() {
+    super();
+  }
+}
+function InputRecordSchema_$reflection() {
+  return class_type("ARCtrl.CWL.InputRecordSchema", void 0, InputRecordSchema, DynamicObj_$reflection());
+}
+function InputRecordSchema_$ctor() {
+  return new InputRecordSchema();
+}
+class InputEnumSchema extends DynamicObj {
+  constructor() {
+    super();
+  }
+}
+function InputEnumSchema_$reflection() {
+  return class_type("ARCtrl.CWL.InputEnumSchema", void 0, InputEnumSchema, DynamicObj_$reflection());
+}
+function InputEnumSchema_$ctor() {
+  return new InputEnumSchema();
+}
+class InputArraySchema extends DynamicObj {
+  constructor() {
+    super();
+  }
+}
+function InputArraySchema_$reflection() {
+  return class_type("ARCtrl.CWL.InputArraySchema", void 0, InputArraySchema, DynamicObj_$reflection());
+}
+function InputArraySchema_$ctor() {
+  return new InputArraySchema();
+}
+class SchemaDefRequirementType extends DynamicObj {
+  constructor(types, definitions) {
+    super();
+    const this$ = new FSharpRef(defaultOf());
+    this$.contents = this;
+    this["init@69"] = 1;
+    setProperty("types", definitions, this$.contents);
+  }
+}
+function SchemaDefRequirementType_$reflection() {
+  return class_type("ARCtrl.CWL.SchemaDefRequirementType", void 0, SchemaDefRequirementType, DynamicObj_$reflection());
+}
+function SchemaDefRequirementType_$ctor_541DA560(types, definitions) {
+  return new SchemaDefRequirementType(types, definitions);
+}
+class SoftwarePackage extends Record {
+  constructor(Package, Version, Specs) {
+    super();
+    this.Package = Package;
+    this.Version = Version;
+    this.Specs = Specs;
+  }
+}
+function SoftwarePackage_$reflection() {
+  return record_type("ARCtrl.CWL.SoftwarePackage", [], SoftwarePackage, () => [["Package", string_type], ["Version", option_type(array_type(string_type))], ["Specs", option_type(array_type(string_type))]]);
+}
+
+export { CWLType, CWLType_$reflection, CWLType_Array, CWLType_Boolean, CWLType_Directory, CWLType_Dirent, CWLType_Double, CWLType_File, CWLType_Float, CWLType_Int, CWLType_Long, CWLType_Null, CWLType_Stdout, CWLType_String, CWLType_directory, CWLType_file, DirectoryInstance, DirectoryInstance_$ctor, DirectoryInstance_$reflection, DirentInstance, DirentInstance_$reflection, FileInstance, FileInstance_$ctor, FileInstance_$reflection, InputArraySchema, InputArraySchema_$ctor, InputArraySchema_$reflection, InputEnumSchema, InputEnumSchema_$ctor, InputEnumSchema_$reflection, InputRecordSchema, InputRecordSchema_$ctor, InputRecordSchema_$reflection, SchemaDefRequirementType, SchemaDefRequirementType_$ctor_541DA560, SchemaDefRequirementType_$reflection, SoftwarePackage, SoftwarePackage_$reflection };

package/dist/ts/ts/CWL/Decode.d.ts

@@ -0,0 +1,94 @@
+import { IMap } from '@fable-org/fable-library-js/Util.js';
+import { YAMLElement_$union } from '../fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.js';
+import { DynamicObj } from '../fable_modules/DynamicObj.7.1.0/DynamicObj.fs.js';
+import { IGetters } from '../fable_modules/YAMLicious.0.0.3/Decode.fs.js';
+import { float64 } from '@fable-org/fable-library-js/Int32.js';
+import { CWLOutput, OutputBinding } from './Outputs.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { SchemaDefRequirementType, SoftwarePackage, CWLType_$union } from './CWLTypes.js';
+import { Requirement_$union, ResourceRequirementInstance, EnvironmentDef, DockerRequirement } from './Requirements.js';
+import { CWLInput, InputBinding } from './Inputs.js';
+import { WorkflowStep, StepInput } from './WorkflowSteps.js';
+import { CWLToolDescription } from './ToolDescription.js';
+import { CWLWorkflowDescription } from './WorkflowDescription.js';
+import { CWLProcessingUnit_$union } from './CWLProcessingUnit.js';
+import { CWLParameterReference } from './ParameterReference.js';
+export declare function ResizeArray_map<$a, $b>(f: ((arg0: $a) => $b), a: $a[]): $b[];
+/**
+ * Decode key value pairs into a dynamic object, while preserving their tree structure
+ */
+export declare function Decode_overflowDecoder(dynObj: DynamicObj, dict: IMap<string, YAMLElement_$union>): DynamicObj;
+/**
+ * Decode a YAMLElement which is either a string or expression into a string
+ */
+export declare function Decode_decodeStringOrExpression(yEle: YAMLElement_$union): string;
+export declare const Decode_outputBindingGlobDecoder: (value_1: YAMLElement_$union) => OutputBinding;
+export declare const Decode_outputBindingDecoder: (value: YAMLElement_$union) => Option<OutputBinding>;
+export declare const Decode_outputSourceDecoder: (value_1: YAMLElement_$union) => Option<string>;
+export declare const Decode_direntDecoder: (value_1: YAMLElement_$union) => CWLType_$union;
+export declare const Decode_cwlArrayTypeDecoder: (value_1: YAMLElement_$union) => CWLType_$union;
+/**
+ * Match the input string to the possible CWL types and checks if it is optional
+ */
+export declare function Decode_cwlTypeStringMatcher(t: string, get$: IGetters): [CWLType_$union, boolean];
+export declare const Decode_cwlTypeDecoder: (value_1: YAMLElement_$union) => [CWLType_$union, boolean];
+export declare const Decode_outputArrayDecoder: (value_1: YAMLElement_$union) => CWLOutput[];
+export declare const Decode_outputsDecoder: (value: YAMLElement_$union) => CWLOutput[];
+/**
+ * Decode a YAMLElement into a DockerRequirement
+ */
+export declare function Decode_dockerRequirementDecoder(get$: IGetters): DockerRequirement;
+/**
+ * Decode a YAMLElement into an EnvVarRequirement array
+ */
+export declare function Decode_envVarRequirementDecoder(get$: IGetters): EnvironmentDef[];
+/**
+ * Decode a YAMLElement into a SoftwareRequirement array
+ */
+export declare function Decode_softwareRequirementDecoder(get$: IGetters): SoftwarePackage[];
+/**
+ * Decode a YAMLElement into a InitialWorkDirRequirement array
+ */
+export declare function Decode_initialWorkDirRequirementDecoder(get$: IGetters): CWLType_$union[];
+/**
+ * Decode a YAMLElement into a ResourceRequirementInstance
+ */
+export declare function Decode_resourceRequirementDecoder(get$: IGetters): ResourceRequirementInstance;
+/**
+ * Decode a YAMLElement into a SchemaDefRequirementType array
+ */
+export declare function Decode_schemaDefRequirementDecoder(get$: IGetters): SchemaDefRequirementType[];
+/**
+ * Decode a YAMLElement into a ToolTimeLimitRequirement
+ */
+export declare function Decode_toolTimeLimitRequirementDecoder(get$: IGetters): float64;
+export declare const Decode_requirementArrayDecoder: (value_2: YAMLElement_$union) => Requirement_$union[];
+export declare const Decode_requirementsDecoder: (value: YAMLElement_$union) => Option<Requirement_$union[]>;
+export declare const Decode_hintsDecoder: (value: YAMLElement_$union) => Option<Requirement_$union[]>;
+export declare const Decode_inputBindingDecoder: (value_5: YAMLElement_$union) => Option<InputBinding>;
+export declare const Decode_inputArrayDecoder: (value_1: YAMLElement_$union) => CWLInput[];
+export declare const Decode_inputsDecoder: (value: YAMLElement_$union) => Option<CWLInput[]>;
+export declare const Decode_baseCommandDecoder: (value_2: YAMLElement_$union) => Option<string[]>;
+export declare const Decode_versionDecoder: (value_1: YAMLElement_$union) => string;
+export declare const Decode_classDecoder: (value_1: YAMLElement_$union) => string;
+export declare function Decode_stringOptionFieldDecoder(field: string): ((arg0: YAMLElement_$union) => Option<string>);
+export declare function Decode_stringFieldDecoder(field: string): ((arg0: YAMLElement_$union) => string);
+export declare const Decode_inputStepDecoder: (value_1: YAMLElement_$union) => StepInput[];
+export declare const Decode_outputStepsDecoder: (value_2: YAMLElement_$union) => string[];
+export declare const Decode_stepArrayDecoder: (value_1: YAMLElement_$union) => WorkflowStep[];
+export declare const Decode_stepsDecoder: (value: YAMLElement_$union) => WorkflowStep[];
+export declare function Decode_commandLineToolDecoder(yamlCWL: YAMLElement_$union): CWLToolDescription;
+/**
+ * Decode a CWL file string written in the YAML format into a CWLToolDescription
+ */
+export declare function Decode_decodeCommandLineTool(cwl: string): CWLToolDescription;
+export declare function Decode_workflowDecoder(yamlCWL: YAMLElement_$union): CWLWorkflowDescription;
+/**
+ * Decode a CWL file string written in the YAML format into a CWLWorkflowDescription
+ */
+export declare function Decode_decodeWorkflow(cwl: string): CWLWorkflowDescription;
+export declare function Decode_decodeCWLProcessingUnit(cwl: string): CWLProcessingUnit_$union;
+export declare function DecodeParameters_cwlParameterReferenceDecoder(get$: IGetters, key: string, yEle: YAMLElement_$union): CWLParameterReference;
+export declare const DecodeParameters_cwlparameterReferenceArrayDecoder: (value: YAMLElement_$union) => CWLParameterReference[];
+export declare function DecodeParameters_decodeYAMLParameterFile(yaml: string): CWLParameterReference[];
+//# sourceMappingURL=Decode.d.ts.map

package/dist/ts/ts/CWL/Decode.d.ts.map

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