@nfdi4plants/arctrl 3.0.0-alpha.4 → 3.0.0-beta.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +16 -8
- package/dist/ts/cjs/ts/ARC.js +31 -20
- package/dist/ts/cjs/ts/Conversion.js +122 -76
- package/dist/ts/cjs/ts/Core/ArcTypes.js +1 -1
- package/dist/ts/cjs/ts/Core/Conversion.js +110 -43
- package/dist/ts/cjs/ts/Core/Data.js +4 -2
- package/dist/ts/cjs/ts/Core/Helper/Collections.js +69 -1
- package/dist/ts/cjs/ts/Core/OntologyAnnotation.js +27 -23
- package/dist/ts/cjs/ts/Core/Table/ArcTable.js +234 -217
- package/dist/ts/cjs/ts/Core/Table/ArcTableAux.js +904 -255
- package/dist/ts/cjs/ts/Core/Table/ArcTables.js +12 -19
- package/dist/ts/cjs/ts/Core/Table/CompositeColumn.js +4 -2
- package/dist/ts/cjs/ts/FileSystem/DefaultGitattributes.js +1 -1
- package/dist/ts/cjs/ts/Json/Decode.js +105 -0
- package/dist/ts/cjs/ts/Json/Encode.js +42 -0
- package/dist/ts/cjs/ts/Json/Table/ArcTable.js +100 -113
- package/dist/ts/cjs/ts/Json.js +46 -1
- package/dist/ts/cjs/ts/ROCrateIO.js +12 -1
- package/dist/ts/cjs/ts/Spreadsheet/AnnotationTable/ArcTable.js +15 -4
- package/dist/ts/cjs/ts/Spreadsheet/AnnotationTable/CompositeColumn.js +77 -6
- package/dist/ts/cjs/ts/Spreadsheet/ArcInvestigation.js +31 -15
- package/dist/ts/cjs/ts/Spreadsheet/DataMapTable/DataMapHeader.js +1 -1
- package/dist/ts/cjs/ts/Spreadsheet/Metadata/SparseTable.js +2 -5
- package/dist/ts/esm/ts/ARC.js +34 -23
- package/dist/ts/esm/ts/Conversion.js +128 -82
- package/dist/ts/esm/ts/Core/ArcTypes.js +1 -1
- package/dist/ts/esm/ts/Core/Conversion.js +112 -45
- package/dist/ts/esm/ts/Core/Data.js +7 -5
- package/dist/ts/esm/ts/Core/Helper/Collections.js +61 -1
- package/dist/ts/esm/ts/Core/OntologyAnnotation.js +29 -25
- package/dist/ts/esm/ts/Core/Table/ArcTable.js +243 -226
- package/dist/ts/esm/ts/Core/Table/ArcTableAux.js +897 -264
- package/dist/ts/esm/ts/Core/Table/ArcTables.js +15 -22
- package/dist/ts/esm/ts/Core/Table/CompositeColumn.js +5 -3
- package/dist/ts/esm/ts/FileSystem/DefaultGitattributes.js +1 -1
- package/dist/ts/esm/ts/Json/Decode.js +105 -3
- package/dist/ts/esm/ts/Json/Encode.js +42 -2
- package/dist/ts/esm/ts/Json/Table/ArcTable.js +108 -121
- package/dist/ts/esm/ts/Json.js +39 -0
- package/dist/ts/esm/ts/ROCrateIO.js +14 -3
- package/dist/ts/esm/ts/Spreadsheet/AnnotationTable/ArcTable.js +17 -7
- package/dist/ts/esm/ts/Spreadsheet/AnnotationTable/CompositeColumn.js +78 -9
- package/dist/ts/esm/ts/Spreadsheet/ArcInvestigation.js +33 -17
- package/dist/ts/esm/ts/Spreadsheet/DataMapTable/DataMapHeader.js +1 -1
- package/dist/ts/esm/ts/Spreadsheet/Metadata/SparseTable.js +3 -6
- package/dist/ts/types/ts/ARC.d.ts +2 -2
- package/dist/ts/types/ts/ARC.d.ts.map +1 -1
- package/dist/ts/types/ts/Conversion.d.ts +15 -16
- package/dist/ts/types/ts/Conversion.d.ts.map +1 -1
- package/dist/ts/types/ts/Core/ArcTypes.d.ts +2 -0
- package/dist/ts/types/ts/Core/ArcTypes.d.ts.map +1 -1
- package/dist/ts/types/ts/Core/Conversion.d.ts +14 -15
- package/dist/ts/types/ts/Core/Conversion.d.ts.map +1 -1
- package/dist/ts/types/ts/Core/Data.d.ts.map +1 -1
- package/dist/ts/types/ts/Core/Helper/Collections.d.ts +8 -0
- package/dist/ts/types/ts/Core/Helper/Collections.d.ts.map +1 -1
- package/dist/ts/types/ts/Core/OntologyAnnotation.d.ts +9 -0
- package/dist/ts/types/ts/Core/OntologyAnnotation.d.ts.map +1 -1
- package/dist/ts/types/ts/Core/Table/ArcTable.d.ts +35 -28
- package/dist/ts/types/ts/Core/Table/ArcTable.d.ts.map +1 -1
- package/dist/ts/types/ts/Core/Table/ArcTableAux.d.ts +83 -35
- package/dist/ts/types/ts/Core/Table/ArcTableAux.d.ts.map +1 -1
- package/dist/ts/types/ts/Core/Table/ArcTables.d.ts.map +1 -1
- package/dist/ts/types/ts/Core/Table/CompositeColumn.d.ts.map +1 -1
- package/dist/ts/types/ts/FileSystem/DefaultGitattributes.d.ts +1 -1
- package/dist/ts/types/ts/FileSystem/DefaultGitattributes.d.ts.map +1 -1
- package/dist/ts/types/ts/Json/Decode.d.ts +6 -0
- package/dist/ts/types/ts/Json/Decode.d.ts.map +1 -1
- package/dist/ts/types/ts/Json/Encode.d.ts +2 -0
- package/dist/ts/types/ts/Json/Encode.d.ts.map +1 -1
- package/dist/ts/types/ts/Json/Table/ArcTable.d.ts +4 -3
- package/dist/ts/types/ts/Json/Table/ArcTable.d.ts.map +1 -1
- package/dist/ts/types/ts/Json.d.ts +17 -0
- package/dist/ts/types/ts/Json.d.ts.map +1 -1
- package/dist/ts/types/ts/ROCrateIO.d.ts +1 -1
- package/dist/ts/types/ts/ROCrateIO.d.ts.map +1 -1
- package/dist/ts/types/ts/Spreadsheet/AnnotationTable/ArcTable.d.ts +5 -0
- package/dist/ts/types/ts/Spreadsheet/AnnotationTable/ArcTable.d.ts.map +1 -1
- package/dist/ts/types/ts/Spreadsheet/AnnotationTable/CompositeColumn.d.ts +7 -0
- package/dist/ts/types/ts/Spreadsheet/AnnotationTable/CompositeColumn.d.ts.map +1 -1
- package/dist/ts/types/ts/Spreadsheet/ArcInvestigation.d.ts.map +1 -1
- package/dist/ts/types/ts/Spreadsheet/Metadata/SparseTable.d.ts.map +1 -1
- package/package.json +1 -1
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@@ -1,13 +1,13 @@
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import { fromString } from "./fable_modules/Thoth.Json.JavaScript.0.3.0/Decode.fs.js";
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import { Decode_datetime } from "./Json/Decode.js";
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import { join,
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import { join, toFail, printf, toText } from "@fable-org/fable-library-js/String.js";
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import { bind, defaultArg, map, unwrap, value as value_4 } from "@fable-org/fable-library-js/Option.js";
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import { toString } from "./fable_modules/Thoth.Json.JavaScript.0.3.0/Encode.fs.js";
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import { dateTime } from "./Json/Encode.js";
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import { parse, tryParse } from "@fable-org/fable-library-js/Int32.js";
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import { toString as toString_1, FSharpRef } from "@fable-org/fable-library-js/Types.js";
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import { LDRef, LDNode } from "./ROCrate/LDObject.js";
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import { safeHash, equals, disposeSafe, getEnumerator,
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import { safeHash, equals, disposeSafe, getEnumerator, comparePrimitives, stringHash, int32ToString } from "@fable-org/fable-library-js/Util.js";
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import { class_type } from "@fable-org/fable-library-js/Reflection.js";
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import { LDComment } from "./ROCrate/Generic/Comment.js";
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import { Comment$ } from "./Core/Comment.js";
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@@ -24,17 +24,15 @@ import { DataContext_$ctor_Z780A8A2A, DataContext__get_Label, DataContext__get_D
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import { LDSample } from "./ROCrate/Generic/Sample.js";
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import { ActivePatterns_$007CRegex$007C_$007C } from "./Core/Helper/Regex.js";
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import { LDLabProtocol } from "./ROCrate/Generic/LabProtocol.js";
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import {
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import { Unchecked_alignByHeaders, getEmptyCellForHeader, Unchecked_tryGetCellAt } from "./Core/Table/ArcTableAux.js";
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import { ArcTable } from "./Core/Table/ArcTable.js";
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import { LDPerson } from "./ROCrate/Generic/Person.js";
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import { isEmpty, zip, fold, singleton, empty as empty_1, append, delay,
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import { ofSeq, collect, initialize, singleton as
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import { isEmpty, zip, fold, singleton, empty as empty_1, append, delay, map as map_1, choose as choose_1, tryPick, filter, toList, indexed } from "@fable-org/fable-library-js/Seq.js";
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import { ofSeq, collect, initialize, singleton as singleton_1, sortBy, map as map_2, empty, length, choose } from "@fable-org/fable-library-js/List.js";
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import { LDLabProcess } from "./ROCrate/Generic/LabProcess.js";
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import { List_distinct, List_groupBy } from "@fable-org/fable-library-js/Seq2.js";
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import { createMissingIdentifier } from "./Core/Helper/Identifier.js";
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import { ArcTable } from "./Core/Table/ArcTable.js";
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import { singleton as singleton_1 } from "@fable-org/fable-library-js/Array.js";
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import { rangeDouble } from "@fable-org/fable-library-js/Range.js";
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import { Unchecked_alignByHeaders } from "./Core/Table/ArcTableAux.js";
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import { ArcTables } from "./Core/Table/ArcTables.js";
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import { DataMap_init, DataMap_$ctor_4E3220A7, DataMap__get_DataContexts } from "./Core/DataMap.js";
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import { LDOrganization } from "./ROCrate/Generic/Organization.js";
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@@ -604,8 +602,9 @@ export function ProcessConversion_decomposeProcessName_Z721C83C5(name) {
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export function ProcessConversion_tryComponentGetter(generalI, valueI, valueHeader) {
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if (valueHeader.tag === /* Component */ 0) {
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const oa = valueHeader.fields[0];
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return (
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return (table) => ((i) => {
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let matchValue;
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const c = BaseTypes_composeComponent(valueHeader, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), (matchValue == null) ? getEmptyCellForHeader(valueHeader, undefined) : value_4(matchValue)));
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ARCtrl_ROCrate_LDNode__LDNode_SetColumnIndex_Z524259A4(c, valueI);
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return c;
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});
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export function ProcessConversion_tryParameterGetter(generalI, valueI, valueHeader) {
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return (
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const p = BaseTypes_composeParameterValue(valueHeader, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), (matchValue == null) ? getEmptyCellForHeader(valueHeader, undefined) : value_4(matchValue)));
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ARCtrl_ROCrate_LDNode__LDNode_SetColumnIndex_Z524259A4(p, valueI);
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});
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export function ProcessConversion_tryFactorGetter(generalI, valueI, valueHeader) {
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const f = BaseTypes_composeFactorValue(valueHeader, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), (matchValue == null) ? getEmptyCellForHeader(valueHeader, undefined) : value_4(matchValue)));
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export function ProcessConversion_tryCharacteristicGetter(generalI, valueI, valueHeader) {
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const c = BaseTypes_composeCharacteristicValue(valueHeader, (matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), (matchValue == null) ? getEmptyCellForHeader(valueHeader, undefined) : value_4(matchValue)));
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export function ProcessConversion_tryGetProtocolTypeGetter(generalI, header) {
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export function ProcessConversion_tryGetProtocolREFGetter(generalI, header) {
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748
795
|
if (header.tag === /* Comment */ 14) {
|
|
749
796
|
const c = header.fields[0];
|
|
750
|
-
return (
|
|
797
|
+
return (table) => ((i) => {
|
|
798
|
+
let matchValue, cell;
|
|
799
|
+
return toString_1((matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values), (matchValue == null) ? (new Comment$(c)) : ((cell = value_4(matchValue), new Comment$(c, cell.AsFreeText)))));
|
|
800
|
+
});
|
|
751
801
|
}
|
|
752
802
|
else {
|
|
753
803
|
return undefined;
|
|
@@ -755,8 +805,16 @@ export function ProcessConversion_tryGetCommentGetter(generalI, header) {
|
|
|
755
805
|
}
|
|
756
806
|
export function ProcessConversion_tryGetPerformerGetter(generalI, header) {
|
|
757
807
|
if (header.tag === /* Performer */ 9) {
|
|
758
|
-
return (
|
|
759
|
-
|
|
808
|
+
return (table) => ((i) => {
|
|
809
|
+
let performer;
|
|
810
|
+
const matchValue = Unchecked_tryGetCellAt(generalI, i, table.Values);
|
|
811
|
+
if (matchValue == null) {
|
|
812
|
+
performer = "";
|
|
813
|
+
}
|
|
814
|
+
else {
|
|
815
|
+
const cell = value_4(matchValue);
|
|
816
|
+
performer = cell.AsFreeText;
|
|
817
|
+
}
|
|
760
818
|
return LDPerson.create(performer);
|
|
761
819
|
});
|
|
762
820
|
}
|
|
@@ -796,20 +854,20 @@ export function ProcessConversion_getProcessGetter(assayName, studyName, process
|
|
|
796
854
|
let inputGetter_1;
|
|
797
855
|
const matchValue = tryPick((tupledArg_11) => ProcessConversion_tryGetInputGetter(tupledArg_11[0], tupledArg_11[1]), headers_1);
|
|
798
856
|
if (matchValue == null) {
|
|
799
|
-
inputGetter_1 = ((length(charGetters) !== 0) ? ((
|
|
857
|
+
inputGetter_1 = ((length(charGetters) !== 0) ? ((table_1) => ((i_1) => {
|
|
800
858
|
let chars_1;
|
|
801
|
-
const collection_1 = map_1((f_1) => f_1(
|
|
859
|
+
const collection_1 = map_1((f_1) => f_1(table_1)(i_1), charGetters);
|
|
802
860
|
chars_1 = Array.from(collection_1);
|
|
803
861
|
return ResizeArray_singleton(LDSample.createSample(`${processNameRoot}_Input_${i_1}`, undefined, chars_1));
|
|
804
|
-
})) : ((
|
|
862
|
+
})) : ((table_2) => ((i_2) => [])));
|
|
805
863
|
}
|
|
806
864
|
else {
|
|
807
865
|
const inputGetter = value_4(matchValue);
|
|
808
|
-
inputGetter_1 = ((
|
|
866
|
+
inputGetter_1 = ((table) => ((i) => {
|
|
809
867
|
let chars;
|
|
810
|
-
const collection = map_1((f) => f(
|
|
868
|
+
const collection = map_1((f) => f(table)(i), charGetters);
|
|
811
869
|
chars = Array.from(collection);
|
|
812
|
-
const input = inputGetter(
|
|
870
|
+
const input = inputGetter(table)(i);
|
|
813
871
|
if (chars.length > 0) {
|
|
814
872
|
LDSample.setAdditionalProperties(input, chars);
|
|
815
873
|
}
|
|
@@ -819,41 +877,39 @@ export function ProcessConversion_getProcessGetter(assayName, studyName, process
|
|
|
819
877
|
let outputGetter_1;
|
|
820
878
|
const matchValue_1 = tryPick((tupledArg_12) => ProcessConversion_tryGetOutputGetter(tupledArg_12[0], tupledArg_12[1]), headers_1);
|
|
821
879
|
if (matchValue_1 == null) {
|
|
822
|
-
outputGetter_1 = ((length(factorValueGetters) !== 0) ? ((
|
|
880
|
+
outputGetter_1 = ((length(factorValueGetters) !== 0) ? ((table_4) => ((i_4) => {
|
|
823
881
|
let factors_1;
|
|
824
|
-
const collection_3 = map_1((f_3) => f_3(
|
|
882
|
+
const collection_3 = map_1((f_3) => f_3(table_4)(i_4), factorValueGetters);
|
|
825
883
|
factors_1 = Array.from(collection_3);
|
|
826
884
|
return ResizeArray_singleton(LDSample.createSample(`${processNameRoot}_Output_${i_4}`, undefined, factors_1));
|
|
827
|
-
})) : ((
|
|
885
|
+
})) : ((table_5) => ((i_5) => [])));
|
|
828
886
|
}
|
|
829
887
|
else {
|
|
830
888
|
const outputGetter = value_4(matchValue_1);
|
|
831
|
-
outputGetter_1 = ((
|
|
889
|
+
outputGetter_1 = ((table_3) => ((i_3) => {
|
|
832
890
|
let factors;
|
|
833
|
-
const collection_2 = map_1((f_2) => f_2(
|
|
891
|
+
const collection_2 = map_1((f_2) => f_2(table_3)(i_3), factorValueGetters);
|
|
834
892
|
factors = Array.from(collection_2);
|
|
835
|
-
const output = outputGetter(
|
|
893
|
+
const output = outputGetter(table_3)(i_3);
|
|
836
894
|
if (factors.length > 0) {
|
|
837
895
|
LDSample.setAdditionalProperties(output, factors);
|
|
838
896
|
}
|
|
839
897
|
return ResizeArray_singleton(output);
|
|
840
898
|
}));
|
|
841
899
|
}
|
|
842
|
-
return (
|
|
843
|
-
const pn = (
|
|
844
|
-
|
|
845
|
-
|
|
846
|
-
const
|
|
847
|
-
const comments = map((collection_5) => Array.from(collection_5), Option_fromValueWithDefault(empty(), map_2((f_5) => f_5(matrix_6)(i_6), commentGetters)));
|
|
848
|
-
const components = map((collection_6) => Array.from(collection_6), Option_fromValueWithDefault(empty(), map_2((f_6) => f_6(matrix_6)(i_6), componentGetters)));
|
|
900
|
+
return (table_6) => ((i_6) => {
|
|
901
|
+
const pn = (table_6.RowCount === 1) ? processNameRoot : ProcessConversion_composeProcessName(processNameRoot, i_6);
|
|
902
|
+
const paramvalues = map((collection_4) => Array.from(collection_4), Option_fromValueWithDefault(empty(), map_2((f_4) => f_4(table_6)(i_6), parameterValueGetters)));
|
|
903
|
+
const comments = map((collection_5) => Array.from(collection_5), Option_fromValueWithDefault(empty(), map_2((f_5) => f_5(table_6)(i_6), commentGetters)));
|
|
904
|
+
const components = map((collection_6) => Array.from(collection_6), Option_fromValueWithDefault(empty(), map_2((f_6) => f_6(table_6)(i_6), componentGetters)));
|
|
849
905
|
const id = LDLabProcess.genId(processNameRoot, unwrap(assayName), unwrap(studyName)) + (`_${i_6}`);
|
|
850
906
|
let protocol;
|
|
851
|
-
const name = map((f_7) => f_7(
|
|
907
|
+
const name = map((f_7) => f_7(table_6)(i_6), protocolREFGetter);
|
|
852
908
|
const protocolId = LDLabProtocol.genId(unwrap(name), processNameRoot);
|
|
853
|
-
protocol = LDLabProtocol.create(protocolId, unwrap(name), unwrap(map((f_8) => f_8(
|
|
854
|
-
const matchValue_2 = inputGetter_1(
|
|
855
|
-
const matchValue_3 = outputGetter_1(
|
|
856
|
-
const agent = map((f_12) => f_12(
|
|
909
|
+
protocol = LDLabProtocol.create(protocolId, unwrap(name), unwrap(map((f_8) => f_8(table_6)(i_6), protocolDescriptionGetter)), unwrap(map((f_9) => f_9(table_6)(i_6), protocolTypeGetter)), undefined, undefined, unwrap(components), undefined, unwrap(map((f_10) => f_10(table_6)(i_6), protocolURIGetter)), unwrap(map((f_11) => f_11(table_6)(i_6), protocolVersionGetter)));
|
|
910
|
+
const matchValue_2 = inputGetter_1(table_6)(i_6);
|
|
911
|
+
const matchValue_3 = outputGetter_1(table_6)(i_6);
|
|
912
|
+
const agent = map((f_12) => f_12(table_6)(i_6), performerGetter);
|
|
857
913
|
return LDLabProcess.create(pn, matchValue_2, matchValue_3, id, unwrap(agent), unwrap(protocol), unwrap(paramvalues), undefined, unwrap(comments));
|
|
858
914
|
});
|
|
859
915
|
}
|
|
@@ -866,36 +922,28 @@ export function ProcessConversion_getProcessGetter(assayName, studyName, process
|
|
|
866
922
|
*/
|
|
867
923
|
export function ProcessConversion_groupProcesses_Z27F0B586(processes, graph, context) {
|
|
868
924
|
return List_groupBy((p) => {
|
|
869
|
-
let protocol,
|
|
925
|
+
let protocol, protocol_1;
|
|
870
926
|
const matchValue = LDLabProcess.tryGetNameAsString(p, unwrap(context));
|
|
871
927
|
const matchValue_1 = LDLabProcess.tryGetExecutesLabProtocol(p, unwrap(graph), unwrap(context));
|
|
872
|
-
let matchResult,
|
|
928
|
+
let matchResult, name_1, protocol_2, name_2, protocol_3;
|
|
873
929
|
if (matchValue != null) {
|
|
874
930
|
if (ProcessConversion_decomposeProcessName_Z721C83C5(value_4(matchValue))[1] != null) {
|
|
875
931
|
matchResult = 0;
|
|
876
|
-
|
|
932
|
+
name_1 = value_4(matchValue);
|
|
877
933
|
}
|
|
878
934
|
else if (matchValue_1 != null) {
|
|
879
935
|
if ((protocol = value_4(matchValue_1), LDLabProtocol.tryGetNameAsString(protocol, unwrap(context)) != null)) {
|
|
880
936
|
matchResult = 1;
|
|
881
937
|
protocol_2 = value_4(matchValue_1);
|
|
882
938
|
}
|
|
883
|
-
else if ((name_1 = value_4(matchValue), name_1.indexOf("_") >= 0)) {
|
|
884
|
-
matchResult = 2;
|
|
885
|
-
name_4 = value_4(matchValue);
|
|
886
|
-
}
|
|
887
939
|
else {
|
|
888
|
-
matchResult =
|
|
889
|
-
|
|
940
|
+
matchResult = 2;
|
|
941
|
+
name_2 = value_4(matchValue);
|
|
890
942
|
}
|
|
891
943
|
}
|
|
892
|
-
else if ((name_2 = value_4(matchValue), name_2.indexOf("_") >= 0)) {
|
|
893
|
-
matchResult = 2;
|
|
894
|
-
name_4 = value_4(matchValue);
|
|
895
|
-
}
|
|
896
944
|
else {
|
|
897
|
-
matchResult =
|
|
898
|
-
|
|
945
|
+
matchResult = 2;
|
|
946
|
+
name_2 = value_4(matchValue);
|
|
899
947
|
}
|
|
900
948
|
}
|
|
901
949
|
else if (matchValue_1 != null) {
|
|
@@ -904,23 +952,21 @@ export function ProcessConversion_groupProcesses_Z27F0B586(processes, graph, con
|
|
|
904
952
|
protocol_2 = value_4(matchValue_1);
|
|
905
953
|
}
|
|
906
954
|
else {
|
|
907
|
-
matchResult =
|
|
955
|
+
matchResult = 3;
|
|
908
956
|
protocol_3 = value_4(matchValue_1);
|
|
909
957
|
}
|
|
910
958
|
}
|
|
911
959
|
else {
|
|
912
|
-
matchResult =
|
|
960
|
+
matchResult = 4;
|
|
913
961
|
}
|
|
914
962
|
switch (matchResult) {
|
|
915
963
|
case 0:
|
|
916
|
-
return ProcessConversion_decomposeProcessName_Z721C83C5(
|
|
964
|
+
return ProcessConversion_decomposeProcessName_Z721C83C5(name_1)[0];
|
|
917
965
|
case 1:
|
|
918
966
|
return defaultArg(LDLabProtocol.tryGetNameAsString(protocol_2, unwrap(context)), "");
|
|
919
967
|
case 2:
|
|
920
|
-
return
|
|
968
|
+
return name_2;
|
|
921
969
|
case 3:
|
|
922
|
-
return name_5;
|
|
923
|
-
case 4:
|
|
924
970
|
return protocol_3.Id;
|
|
925
971
|
default:
|
|
926
972
|
return createMissingIdentifier();
|
|
@@ -1127,25 +1173,25 @@ export function ARCtrl_ArcTable__ArcTable_fromProtocol_Static_Z6839B9E8(p, graph
|
|
|
1127
1173
|
while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
|
|
1128
1174
|
const c = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
|
|
1129
1175
|
const patternInput = BaseTypes_decomposeComponent_Z2F770004(c, unwrap(context));
|
|
1130
|
-
t.AddColumn(patternInput[0],
|
|
1176
|
+
t.AddColumn(patternInput[0], ResizeArray_singleton(patternInput[1]), unwrap(ARCtrl_ROCrate_LDNode__LDNode_TryGetColumnIndex(c)));
|
|
1131
1177
|
}
|
|
1132
1178
|
}
|
|
1133
1179
|
finally {
|
|
1134
1180
|
disposeSafe(enumerator);
|
|
1135
1181
|
}
|
|
1136
1182
|
map((d) => {
|
|
1137
|
-
t.AddProtocolDescriptionColumn(
|
|
1183
|
+
t.AddProtocolDescriptionColumn(ResizeArray_singleton(d));
|
|
1138
1184
|
}, LDLabProtocol.tryGetDescriptionAsString(p, unwrap(context)));
|
|
1139
1185
|
map((d_1) => {
|
|
1140
|
-
t.AddProtocolVersionColumn(
|
|
1186
|
+
t.AddProtocolVersionColumn(ResizeArray_singleton(d_1));
|
|
1141
1187
|
}, LDLabProtocol.tryGetVersionAsString(p, unwrap(context)));
|
|
1142
1188
|
map((d_2) => {
|
|
1143
|
-
t.AddProtocolTypeColumn(
|
|
1189
|
+
t.AddProtocolTypeColumn(ResizeArray_singleton(d_2));
|
|
1144
1190
|
}, ProcessConversion_tryGetProtocolType_Z6839B9E8(p, undefined, unwrap(context)));
|
|
1145
1191
|
map((d_3) => {
|
|
1146
|
-
t.AddProtocolUriColumn(
|
|
1192
|
+
t.AddProtocolUriColumn(ResizeArray_singleton(d_3));
|
|
1147
1193
|
}, LDLabProtocol.tryGetUrl(p, unwrap(context)));
|
|
1148
|
-
t.AddProtocolNameColumn(
|
|
1194
|
+
t.AddProtocolNameColumn(ResizeArray_singleton(name));
|
|
1149
1195
|
return t;
|
|
1150
1196
|
}
|
|
1151
1197
|
/**
|
|
@@ -1154,7 +1200,7 @@ export function ARCtrl_ArcTable__ArcTable_fromProtocol_Static_Z6839B9E8(p, graph
|
|
|
1154
1200
|
export function ARCtrl_ArcTable__ArcTable_GetProtocols(this$) {
|
|
1155
1201
|
let source;
|
|
1156
1202
|
if (this$.RowCount === 0) {
|
|
1157
|
-
return
|
|
1203
|
+
return singleton_1((source = this$.Headers, fold((p, h) => {
|
|
1158
1204
|
if (h.tag === /* Component */ 0) {
|
|
1159
1205
|
const oa = h.fields[0];
|
|
1160
1206
|
const matchValue = oa.NameText;
|
|
@@ -1182,11 +1228,11 @@ export function ARCtrl_ArcTable__ArcTable_GetProtocols(this$) {
|
|
|
1182
1228
|
*/
|
|
1183
1229
|
export function ARCtrl_ArcTable__ArcTable_GetProcesses_40457300(this$, assayName, studyName) {
|
|
1184
1230
|
if (this$.RowCount === 0) {
|
|
1185
|
-
return
|
|
1231
|
+
return singleton_1(LDLabProcess.create(this$.Name));
|
|
1186
1232
|
}
|
|
1187
1233
|
else {
|
|
1188
1234
|
const getter = ProcessConversion_getProcessGetter(assayName, studyName, this$.Name, this$.Headers);
|
|
1189
|
-
return toList(delay(() => map_1((i) => getter(this
|
|
1235
|
+
return toList(delay(() => map_1((i) => getter(this$)(i), rangeDouble(0, 1, this$.RowCount - 1))));
|
|
1190
1236
|
}
|
|
1191
1237
|
}
|
|
1192
1238
|
/**
|
|
@@ -1198,7 +1244,7 @@ export function ARCtrl_ArcTable__ArcTable_GetProcesses_40457300(this$, assayName
|
|
|
1198
1244
|
*/
|
|
1199
1245
|
export function ARCtrl_ArcTable__ArcTable_fromProcesses_Static_Z3575FB5F(name, ps, graph, context) {
|
|
1200
1246
|
const tupledArg = Unchecked_alignByHeaders(true, collect((p) => ofSeq(ProcessConversion_processToRows_Z6839B9E8(p, unwrap(graph), unwrap(context))), ps));
|
|
1201
|
-
return ArcTable.
|
|
1247
|
+
return ArcTable.fromArcTableValues(name, tupledArg[0], tupledArg[1]);
|
|
1202
1248
|
}
|
|
1203
1249
|
/**
|
|
1204
1250
|
* Return a list of all the processes in all the tables.
|
|
@@ -1217,7 +1263,7 @@ export function ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586(ps, g
|
|
|
1217
1263
|
let collection;
|
|
1218
1264
|
return new ArcTables((collection = map_2((tupledArg) => {
|
|
1219
1265
|
const tupledArg_1 = Unchecked_alignByHeaders(true, collect((p) => ofSeq(ProcessConversion_processToRows_Z6839B9E8(p, unwrap(graph), unwrap(context))), tupledArg[1]));
|
|
1220
|
-
return ArcTable.
|
|
1266
|
+
return ArcTable.fromArcTableValues(tupledArg[0], tupledArg_1[0], tupledArg_1[1]);
|
|
1221
1267
|
}, ProcessConversion_groupProcesses_Z27F0B586(ps, unwrap(graph), unwrap(context))), Array.from(collection)));
|
|
1222
1268
|
}
|
|
1223
1269
|
export class DatamapConversion {
|
|
@@ -1607,7 +1607,7 @@ export class ArcRun extends ArcTables {
|
|
|
1607
1607
|
return newRun;
|
|
1608
1608
|
};
|
|
1609
1609
|
}
|
|
1610
|
-
static
|
|
1610
|
+
static mapTable(name, updateFun) {
|
|
1611
1611
|
return (run) => {
|
|
1612
1612
|
const newRun = run.Copy();
|
|
1613
1613
|
newRun.MapTable(name, updateFun);
|