@nfdi4plants/arctrl 3.0.0-alpha.2 → 3.0.0-alpha.4

package/dist/ts/esm/ts/JsonIO/LDObject.js

@@ -0,0 +1,94 @@
+import { fromString } from "../fable_modules/Thoth.Json.JavaScript.0.3.0/Decode.fs.js";
+import { encoder, decoder as decoder_1 } from "../Json/ROCrate/LDNode.js";
+import { printf, toText } from "@fable-org/fable-library-js/String.js";
+import { toString } from "../fable_modules/Thoth.Json.JavaScript.0.3.0/Encode.fs.js";
+import { defaultSpaces } from "../Json/Encode.js";
+import { unwrap } from "@fable-org/fable-library-js/Option.js";
+import { class_type } from "@fable-org/fable-library-js/Reflection.js";
+import { encoder as encoder_1, decoder as decoder_2 } from "../Json/ROCrate/LDGraph.js";
+export function ARCtrl_ROCrate_LDNode__LDNode_fromROCrateJsonString_Static_Z721C83C5(s) {
+    let arg;
+    const matchValue = fromString(decoder_1, s);
+    if (matchValue.tag === /* Error */ 1) {
+        throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+/**
+ * exports in json-ld format
+ */
+export function ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F(spaces) {
+    return (obj) => {
+        const value = encoder(obj);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+export function ARCtrl_ROCrate_LDNode__LDNode_ToROCrateJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F(unwrap(spaces))(this$);
+}
+export class LDNodeExtensions_PyJsInterop {
+    constructor() {
+    }
+    static fromROCrateJsonString(s) {
+        let arg;
+        const matchValue = fromString(decoder_1, s);
+        if (matchValue.tag === /* Error */ 1) {
+            throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+        }
+        else {
+            return matchValue.fields[0];
+        }
+    }
+    static toROCrateJsonString(node, spaces) {
+        const value = encoder(node);
+        return toString(defaultSpaces(spaces), value);
+    }
+}
+export function LDNodeExtensions_PyJsInterop_$reflection() {
+    return class_type("ARCtrl.Json.LDNodeExtensions.PyJsInterop", undefined, LDNodeExtensions_PyJsInterop);
+}
+export function ARCtrl_ROCrate_LDGraph__LDGraph_fromROCrateJsonString_Static_Z721C83C5(s) {
+    let arg;
+    const matchValue = fromString(decoder_2, s);
+    if (matchValue.tag === /* Error */ 1) {
+        throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+/**
+ * exports in json-ld format
+ */
+export function ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F(spaces) {
+    return (obj) => {
+        const value = encoder_1(obj);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+export function ARCtrl_ROCrate_LDGraph__LDGraph_ToROCrateJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F(unwrap(spaces))(this$);
+}
+export class LDGraphExtensions_PyJsInterop {
+    constructor() {
+    }
+    static fromROCrateJsonString(s) {
+        let arg;
+        const matchValue = fromString(decoder_2, s);
+        if (matchValue.tag === /* Error */ 1) {
+            throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+        }
+        else {
+            return matchValue.fields[0];
+        }
+    }
+    static toROCrateJsonString(graph, spaces) {
+        const value = encoder_1(graph);
+        return toString(defaultSpaces(spaces), value);
+    }
+}
+export function LDGraphExtensions_PyJsInterop_$reflection() {
+    return class_type("ARCtrl.Json.LDGraphExtensions.PyJsInterop", undefined, LDGraphExtensions_PyJsInterop);
+}

package/dist/ts/esm/ts/JsonIO/Table/Compression.js

@@ -1,5 +1,4 @@
-import { safeHash, equals } from "@fable-org/fable-library-js/Util.js";
-import { Dictionary } from "@fable-org/fable-library-js/MutableMap.js";
+import { Dictionary_init } from "../../Core/Helper/Collections.js";
 import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.3.0/Encode.fs.js";
 import { decoder as decoder_3, arrayFromMap, encoder as encoder_1 } from "../../Json/Table/CellTable.js";
 import { decoder as decoder_2, arrayFromMap as arrayFromMap_1, encoder as encoder_2 } from "../../Json/Table/OATable.js";
@@ -7,15 +6,9 @@ import { decoder as decoder_1, arrayFromMap as arrayFromMap_2, encoder as encode
 import { map } from "@fable-org/fable-library-js/Seq.js";
 import { object as object_1 } from "../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js";
 export function encode(encoder, obj) {
-    const stringTable = new Map([]);
-    const oaTable = new Dictionary([], {
-        Equals: equals,
-        GetHashCode: safeHash,
-    });
-    const cellTable = new Dictionary([], {
-        Equals: equals,
-        GetHashCode: safeHash,
-    });
+    const stringTable = Dictionary_init();
+    const oaTable = Dictionary_init();
+    const cellTable = Dictionary_init();
     const object = encoder(stringTable, oaTable, cellTable, obj);
     toString(0, object);
     const values = [["cellTable", encoder_1(stringTable, oaTable, arrayFromMap(cellTable))], ["oaTable", encoder_2(stringTable, arrayFromMap_1(oaTable))], ["stringTable", encoder_3(arrayFromMap_2(stringTable))], ["object", object]];

package/dist/ts/esm/ts/ROCrate/Generic/LabProcess.js

@@ -212,7 +212,7 @@ export class LDLabProcess {
     }
     static genId(name, assayName, studyName) {
         let study_1, assay_1, assay, study;
-        return clean((assayName == null) ? ((studyName != null) ? ((study_1 = value(studyName), `#Process_${study_1}_${name}`)) : (`#Process_${name}`)) : ((studyName == null) ? ((assay_1 = value(assayName), `#Process_${assay_1}_${name}`)) : ((assay = value(assayName), (study = value(studyName), `#Process_${study}_${assay}_${name}`)))));
+        return clean((assayName == null) ? ((studyName != null) ? ((study_1 = value(studyName), `#Process_S_${study_1}_${name}`)) : (`#Process_${name}`)) : ((studyName == null) ? ((assay_1 = value(assayName), `#Process_A_${assay_1}_${name}`)) : ((assay = value(assayName), (study = value(studyName), `#Process_S_${study}_A_${assay}_${name}`)))));
     }
     static create(name, objects, results, id, agent, executesLabProtocol, parameterValues, endTime, disambiguatingDescriptions, context) {
         const id_1 = (id == null) ? LDLabProcess.genId(name) : value(id);

package/dist/ts/esm/ts/ROCrate/LDContext.js

@@ -1,42 +1,18 @@
-import { Dictionary } from "@fable-org/fable-library-js/MutableMap.js";
-import { stringHash, comparePrimitives, safeHash, disposeSafe, getEnumerator, defaultOf, structuralHash, equals } from "@fable-org/fable-library-js/Util.js";
-import { tryPick, sort, map, reduce, iterate } from "@fable-org/fable-library-js/Seq.js";
-import { getItemFromDict, tryGetValue, addToDict } from "@fable-org/fable-library-js/MapUtil.js";
-import { toString, FSharpRef } from "@fable-org/fable-library-js/Types.js";
-import { defaultArg, unwrap, value as value_1, some } from "@fable-org/fable-library-js/Option.js";
 import { ActivePatterns_$007CRegex$007C_$007C } from "../Core/Helper/Regex.js";
+import { defaultArg, unwrap, value as value_5 } from "@fable-org/fable-library-js/Option.js";
+import { FSharpRef, toString } from "@fable-org/fable-library-js/Types.js";
 import { Uri } from "@fable-org/fable-library-js/Uri.js";
-import { Dictionary_addOrUpdate } from "../Core/Helper/Collections.js";
+import { defaultOf, stringHash, comparePrimitives, safeHash, disposeSafe, getEnumerator } from "@fable-org/fable-library-js/Util.js";
+import { tryGetValue, getItemFromDict, addToDict } from "@fable-org/fable-library-js/MapUtil.js";
+import { tryPick, sort, map, reduce } from "@fable-org/fable-library-js/Seq.js";
+import { StringDictionary_ofSeq } from "../Core/Helper/Collections.js";
 import { hash as hash_2, mergeHashes, boxHashSeq } from "../Core/Helper/HashCodes.js";
 import { class_type } from "@fable-org/fable-library-js/Reflection.js";
-export function Dictionary_ofSeq(s) {
-    const dict = new Dictionary([], {
-        Equals: equals,
-        GetHashCode: structuralHash,
-    });
-    iterate((tupledArg) => {
-        addToDict(dict, tupledArg[0], tupledArg[1]);
-    }, s);
-    return dict;
-}
-export function Dictionary_tryFind(key, dict) {
-    let patternInput;
-    let outArg = defaultOf();
-    patternInput = [tryGetValue(dict, key, new FSharpRef(() => outArg, (v) => {
-            outArg = v;
-        })), outArg];
-    if (patternInput[0]) {
-        return some(patternInput[1]);
-    }
-    else {
-        return undefined;
-    }
-}
 export const IRIHelper_compactIRIRegex = "(?<prefix>.*):(?<suffix>[^\\/][^\\/].*)";
 export function IRIHelper_$007CCompactIri$007C_$007C(termDefition) {
     const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(IRIHelper_compactIRIRegex, termDefition);
     if (activePatternResult != null) {
-        const result = value_1(activePatternResult);
+        const result = value_5(activePatternResult);
         return [(result.groups && result.groups.prefix) || "", (result.groups && result.groups.suffix) || ""];
     }
     else {
@@ -54,7 +30,7 @@ export function IRIHelper_combine(baseIRI, relative) {
 export function IRIHelper_combineOptional(baseIRI, relative) {
     if (baseIRI == null) {
         if (relative != null) {
-            const r_1 = value_1(relative);
+            const r_1 = value_5(relative);
             return r_1;
         }
         else {
@@ -62,23 +38,23 @@ export function IRIHelper_combineOptional(baseIRI, relative) {
         }
     }
     else if (relative == null) {
-        const b_1 = value_1(baseIRI);
+        const b_1 = value_5(baseIRI);
         return b_1;
     }
     else {
-        const b = value_1(baseIRI);
-        const r = value_1(relative);
+        const b = value_5(baseIRI);
+        const r = value_5(relative);
         return IRIHelper_combine(b, r);
     }
 }
 export class LDContext {
     constructor(mappings, baseContexts) {
-        this["baseContexts@54"] = defaultArg(baseContexts, []);
+        this["baseContexts@41"] = defaultArg(baseContexts, []);
         this.name = undefined;
-        this["mappings@58"] = ((mappings == null) ? (new Map([])) : value_1(mappings));
+        this["mappings@45"] = ((mappings == null) ? (new Map([])) : value_5(mappings));
         this.reverseMappings = (new Map([]));
         this.compactReverseMappings = (new Map([]));
-        let enumerator = getEnumerator(this["mappings@58"]);
+        let enumerator = getEnumerator(this["mappings@45"]);
         try {
             while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
                 const kvp = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
@@ -91,15 +67,15 @@ export class LDContext {
     }
     get Mappings() {
         const this$ = this;
-        return this$["mappings@58"];
+        return this$["mappings@45"];
     }
     get BaseContexts() {
         const this$ = this;
-        return this$["baseContexts@54"];
+        return this$["baseContexts@41"];
     }
     set BaseContexts(value) {
         const this$ = this;
-        this$["baseContexts@54"] = value;
+        this$["baseContexts@41"] = value;
     }
     get Name() {
         const this$ = this;
@@ -111,7 +87,15 @@ export class LDContext {
     }
     AddMapping(term, definition) {
         const this$ = this;
-        Dictionary_addOrUpdate(term, definition, this$["mappings@58"]);
+        const key = term;
+        const value = definition;
+        const dict = this$["mappings@45"];
+        if (dict.has(key)) {
+            dict.set(key, value);
+        }
+        else {
+            addToDict(dict, key, value);
+        }
         this$.addReverseMapping(term, definition);
     }
     TryResolveTerm(term) {
@@ -131,11 +115,11 @@ export class LDContext {
         else {
             const p1Def = this$.TryResolveTerm(p1);
             const p2Def = this$.TryResolveTerm(p2);
-            return (p1Def == null) ? ((p2Def != null) && ((p2Def_2 = value_1(p2Def), p1 === p2Def_2))) : ((p2Def == null) ? ((p1Def_2 = value_1(p1Def), p1Def_2 === p2)) : ((p1Def_1 = value_1(p1Def), (p2Def_1 = value_1(p2Def), p1Def_1 === p2Def_1))));
+            return (p1Def == null) ? ((p2Def != null) && ((p2Def_2 = value_5(p2Def), p1 === p2Def_2))) : ((p2Def == null) ? ((p1Def_2 = value_5(p1Def), p1Def_2 === p2)) : ((p1Def_1 = value_5(p1Def), (p2Def_1 = value_5(p2Def), p1Def_1 === p2Def_1))));
         }
     }
     static fromMappingSeq(mappings) {
-        return new LDContext(Dictionary_ofSeq(mappings));
+        return new LDContext(StringDictionary_ofSeq(mappings));
     }
     static combine_InPlace(baseContext, specificContext) {
         void (specificContext.BaseContexts.push(baseContext));
@@ -146,12 +130,12 @@ export class LDContext {
     }
     static tryCombineOptional(baseContext, specificContext) {
         let s_1, f_1, f, s;
-        return (baseContext == null) ? ((specificContext != null) ? ((s_1 = value_1(specificContext), s_1)) : undefined) : ((specificContext == null) ? ((f_1 = value_1(baseContext), f_1)) : ((f = value_1(baseContext), (s = value_1(specificContext), LDContext.combine(f, s)))));
+        return (baseContext == null) ? ((specificContext != null) ? ((s_1 = value_5(specificContext), s_1)) : undefined) : ((specificContext == null) ? ((f_1 = value_5(baseContext), f_1)) : ((f = value_5(baseContext), (s = value_5(specificContext), LDContext.combine(f, s)))));
     }
     ShallowCopy() {
         const this$ = this;
         const newMappings = new Map([]);
-        let enumerator = getEnumerator(this$["mappings@58"]);
+        let enumerator = getEnumerator(this$["mappings@45"]);
         try {
             while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
                 const kvp = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
@@ -161,12 +145,12 @@ export class LDContext {
         finally {
             disposeSafe(enumerator);
         }
-        return new LDContext(newMappings, this$["baseContexts@54"]);
+        return new LDContext(newMappings, this$["baseContexts@41"]);
     }
     DeepCopy() {
         const this$ = this;
         const newMappings = new Map([]);
-        let enumerator = getEnumerator(this$["mappings@58"]);
+        let enumerator = getEnumerator(this$["mappings@45"]);
         try {
             while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
                 const kvp = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
@@ -177,7 +161,7 @@ export class LDContext {
             disposeSafe(enumerator);
         }
         const newBaseContexts = [];
-        let enumerator_1 = getEnumerator(this$["baseContexts@54"]);
+        let enumerator_1 = getEnumerator(this$["baseContexts@41"]);
         try {
             while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
                 const ctx = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
@@ -209,8 +193,8 @@ export class LDContext {
         }))) | 0;
         let nameHash;
         const matchValue = this$.Name;
-        nameHash = ((matchValue == null) ? 0 : stringHash(value_1(matchValue)));
-        const baseContextsHash = ((this$["baseContexts@54"].length === 0) ? 0 : reduce(mergeHashes, map(safeHash, this$["baseContexts@54"]))) | 0;
+        nameHash = ((matchValue == null) ? 0 : stringHash(value_5(matchValue)));
+        const baseContextsHash = ((this$["baseContexts@41"].length === 0) ? 0 : reduce(mergeHashes, map(safeHash, this$["baseContexts@41"]))) | 0;
         return mergeHashes(mergeHashes(mappingsHash, nameHash), baseContextsHash) | 0;
     }
     "System.ICloneable.Clone"() {
@@ -219,26 +203,70 @@ export class LDContext {
     }
     addReverseMapping(key, value) {
         const this$ = this;
-        Dictionary_addOrUpdate(value, key, this$.reverseMappings);
+        const key_1 = value;
+        const value_1 = key;
+        const dict = this$.reverseMappings;
+        if (dict.has(key_1)) {
+            dict.set(key_1, value_1);
+        }
+        else {
+            addToDict(dict, key_1, value_1);
+        }
         const activePatternResult = IRIHelper_$007CCompactIri$007C_$007C(value);
         if (activePatternResult != null) {
-            const prefix = value_1(activePatternResult)[0];
-            const suffix = value_1(activePatternResult)[1];
-            Dictionary_addOrUpdate(prefix, [suffix, key], this$.compactReverseMappings);
-            const matchValue = Dictionary_tryFind(prefix, this$["mappings@58"]);
+            const prefix = value_5(activePatternResult)[0];
+            const suffix = value_5(activePatternResult)[1];
+            const key_2 = prefix;
+            const value_2 = [suffix, key];
+            const dict_1 = this$.compactReverseMappings;
+            if (dict_1.has(key_2)) {
+                dict_1.set(key_2, value_2);
+            }
+            else {
+                addToDict(dict_1, key_2, value_2);
+            }
+            let matchValue;
+            let patternInput;
+            let outArg = defaultOf();
+            patternInput = [tryGetValue(this$["mappings@45"], prefix, new FSharpRef(() => outArg, (v) => {
+                    outArg = v;
+                })), outArg];
+            matchValue = (patternInput[0] ? patternInput[1] : undefined);
             if (matchValue == null) {
             }
             else {
-                Dictionary_addOrUpdate(IRIHelper_combine(value_1(matchValue), suffix), key, this$.reverseMappings);
+                const key_4 = IRIHelper_combine(value_5(matchValue), suffix);
+                const value_3 = key;
+                const dict_3 = this$.reverseMappings;
+                if (dict_3.has(key_4)) {
+                    dict_3.set(key_4, value_3);
+                }
+                else {
+                    addToDict(dict_3, key_4, value_3);
+                }
             }
         }
         else {
-            const matchValue_1 = Dictionary_tryFind(key, this$.compactReverseMappings);
+            let matchValue_1;
+            let patternInput_1;
+            let outArg_1 = defaultOf();
+            patternInput_1 = [tryGetValue(this$.compactReverseMappings, key, new FSharpRef(() => outArg_1, (v_2) => {
+                    outArg_1 = v_2;
+                })), outArg_1];
+            matchValue_1 = (patternInput_1[0] ? patternInput_1[1] : undefined);
             if (matchValue_1 == null) {
             }
             else {
-                const term = value_1(matchValue_1)[1];
-                Dictionary_addOrUpdate(IRIHelper_combine(value, value_1(matchValue_1)[0]), term, this$.reverseMappings);
+                const term = value_5(matchValue_1)[1];
+                const key_6 = IRIHelper_combine(value, value_5(matchValue_1)[0]);
+                const value_4 = term;
+                const dict_5 = this$.reverseMappings;
+                if (dict_5.has(key_6)) {
+                    dict_5.set(key_6, value_4);
+                }
+                else {
+                    addToDict(dict_5, key_6, value_4);
+                }
             }
         }
     }
@@ -246,20 +274,32 @@ export class LDContext {
         let prefix, suffix, d;
         const this$ = this;
         let definition;
-        const matchValue = Dictionary_tryFind(term, this$["mappings@58"]);
-        definition = ((matchValue == null) ? tryPick((ctx) => ctx.TryResolveTerm(term), this$["baseContexts@54"]) : value_1(matchValue));
+        let matchValue;
+        let patternInput;
+        let outArg = defaultOf();
+        patternInput = [tryGetValue(this$["mappings@45"], term, new FSharpRef(() => outArg, (v) => {
+                outArg = v;
+            })), outArg];
+        matchValue = (patternInput[0] ? patternInput[1] : undefined);
+        definition = ((matchValue == null) ? tryPick((ctx) => ctx.TryResolveTerm(term), this$["baseContexts@41"]) : value_5(matchValue));
         if (definition == null) {
             return undefined;
         }
         else {
-            const activePatternResult = IRIHelper_$007CCompactIri$007C_$007C(value_1(definition));
-            return (activePatternResult != null) ? ((prefix = value_1(activePatternResult)[0], (suffix = value_1(activePatternResult)[1], IRIHelper_combine((prefix === term) ? prefix : defaultArg(this$.tryFindTerm(prefix), prefix), (suffix === term) ? suffix : defaultArg(this$.tryFindTerm(suffix), suffix))))) : ((d = value_1(definition), d));
+            const activePatternResult = IRIHelper_$007CCompactIri$007C_$007C(value_5(definition));
+            return (activePatternResult != null) ? ((prefix = value_5(activePatternResult)[0], (suffix = value_5(activePatternResult)[1], IRIHelper_combine((prefix === term) ? prefix : defaultArg(this$.tryFindTerm(prefix), prefix), (suffix === term) ? suffix : defaultArg(this$.tryFindTerm(suffix), suffix))))) : ((d = value_5(definition), d));
         }
     }
     tryFindIri(iri) {
         const this$ = this;
-        const matchValue = Dictionary_tryFind(iri, this$.reverseMappings);
-        return (matchValue == null) ? tryPick((ctx) => ctx.TryGetTerm(iri), this$["baseContexts@54"]) : value_1(matchValue);
+        let matchValue;
+        let patternInput;
+        let outArg = defaultOf();
+        patternInput = [tryGetValue(this$.reverseMappings, iri, new FSharpRef(() => outArg, (v) => {
+                outArg = v;
+            })), outArg];
+        matchValue = (patternInput[0] ? patternInput[1] : undefined);
+        return (matchValue == null) ? tryPick((ctx) => ctx.TryGetTerm(iri), this$["baseContexts@41"]) : value_5(matchValue);
     }
     tryCompactIRI(iri) {
         throw new Error("TryCompactIRI is Not implemented yet");

package/dist/ts/types/index.d.ts

@@ -1,5 +1,5 @@
 export { ARC } from './ts/ARC.js';
-export { ArcAssay, ArcStudy, ArcInvestigation } from './ts/Core/ArcTypes.js';
+export { ArcAssay, ArcStudy, ArcRun, ArcWorkflow, ArcInvestigation } from './ts/Core/ArcTypes.js';
 export { CompositeCell } from './ts/Core/Table/CompositeCell.js';
 export { CompositeHeader, IOType } from './ts/Core/Table/CompositeHeader.js';
 export { CompositeColumn } from './ts/Core/Table/CompositeColumn.js';
@@ -14,4 +14,47 @@ export { OntologyAnnotation } from './ts/Core/OntologyAnnotation.js';
 export { Comment$ as Comment } from './ts/Core/Comment.js';
 export { Contract } from './ts/Contract/Contract.js';
 export { WebController } from './ts/Template.Web.js';
+import { LDNode, LDGraph, LDRef, LDValue } from './ts/ROCrate/LDObject.js';
+import { LDContext } from './ts/ROCrate/LDContext.js';
+import { initV1_1, initV1_2DRAFT, initBioschemasContext } from './ts/ROCrate/ROCrateContext.js';
+import { LDComment } from './ts/ROCrate/Generic/Comment.js';
+import { LDDefinedTerm } from './ts/ROCrate/Generic/DefinedTerm.js';
+import { LDFile } from './ts/ROCrate/Generic/File.js';
+import { LDLabProcess } from './ts/ROCrate/Generic/LabProcess.js';
+import { LDLabProtocol } from './ts/ROCrate/Generic/LabProtocol.js';
+import { LDOrganization } from './ts/ROCrate/Generic/Organization.js';
+import { LDPerson } from './ts/ROCrate/Generic/Person.js';
+import { LDPostalAddress } from './ts/ROCrate/Generic/PostalAddress.js';
+import { LDPropertyValue } from './ts/ROCrate/Generic/PropertyValue.js';
+import { LDSample } from './ts/ROCrate/Generic/Sample.js';
+import { LDScholarlyArticle } from './ts/ROCrate/Generic/ScholarlyArticle.js';
+import { LDDataset } from './ts/ROCrate/Generic/Dataset.js';
+import { LDGraphExtensions_PyJsInterop as LDGraphIO } from './ts/JsonIO/LDObject.js';
+import { LDNodeExtensions_PyJsInterop as LDNodeIO } from './ts/JsonIO/LDObject.js';
+import { TypeExtensions_Conversion as Conversion } from './ts/Conversion.js';
+export declare const ROCrate: {
+    LDNode: typeof LDNode;
+    LDGraph: typeof LDGraph;
+    LDValue: typeof LDValue;
+    LDRef: typeof LDRef;
+    LDContext: typeof LDContext;
+    initV1_1: typeof initV1_1;
+    initV1_2DRAFT: typeof initV1_2DRAFT;
+    initBioschemasContext: typeof initBioschemasContext;
+    LDComment: typeof LDComment;
+    LDDefinedTerm: typeof LDDefinedTerm;
+    LDFile: typeof LDFile;
+    LDLabProcess: typeof LDLabProcess;
+    LDLabProtocol: typeof LDLabProtocol;
+    LDOrganization: typeof LDOrganization;
+    LDPerson: typeof LDPerson;
+    LDPostalAddress: typeof LDPostalAddress;
+    LDPropertyValue: typeof LDPropertyValue;
+    LDSample: typeof LDSample;
+    LDScholarlyArticle: typeof LDScholarlyArticle;
+    LDDataset: typeof LDDataset;
+    LDGraphIO: typeof LDGraphIO;
+    LDNodeIO: typeof LDNodeIO;
+    Conversion: typeof Conversion;
+};
 //# sourceMappingURL=index.d.ts.map

package/dist/ts/types/index.d.ts.map

@@ -1 +1 @@
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package/dist/ts/types/ts/Conversion.d.ts

@@ -172,7 +172,7 @@ export declare function ProcessConversion_tryGetPerformerGetter(generalI: int32,
 /**
  * Given the header sequence of an ArcTable, returns a function for parsing each row of the table to a process
  */
-export declare function ProcessConversion_getProcessGetter(processNameRoot: string, headers: Iterable<CompositeHeader_$union>): ((arg0: IMap<[int32, int32], CompositeCell_$union>) => ((arg0: int32) => LDNode));
+export declare function ProcessConversion_getProcessGetter(assayName: Option<string>, studyName: Option<string>, processNameRoot: string, headers: Iterable<CompositeHeader_$union>): ((arg0: IMap<[int32, int32], CompositeCell_$union>) => ((arg0: int32) => LDNode));
 /**
  * Groups processes by their name, or by the name of the protocol they execute
  *
@@ -199,7 +199,7 @@ export declare function ARCtrl_ArcTable__ArcTable_GetProtocols(this$: ArcTable):
 /**
  * Returns the list of processes specidified in this ArcTable
  */
-export declare function ARCtrl_ArcTable__ArcTable_GetProcesses(this$: ArcTable): FSharpList<LDNode>;
+export declare function ARCtrl_ArcTable__ArcTable_GetProcesses_40457300(this$: ArcTable, assayName: Option<string>, studyName: Option<string>): FSharpList<LDNode>;
 /**
  * Create a new table from a list of processes
  *
@@ -211,7 +211,7 @@ export declare function ARCtrl_ArcTable__ArcTable_fromProcesses_Static_Z3575FB5F
 /**
  * Return a list of all the processes in all the tables.
  */
-export declare function ARCtrl_ArcTables__ArcTables_GetProcesses(this$: ArcTables): FSharpList<LDNode>;
+export declare function ARCtrl_ArcTables__ArcTables_GetProcesses_40457300(this$: ArcTables, assayName: Option<string>, studyName: Option<string>): FSharpList<LDNode>;
 /**
  * Create a collection of tables from a list of processes.
  *
@@ -273,6 +273,16 @@ export declare function ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy(this$: ArcStudy
 export declare function ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcStudy;
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation(this$: ArcInvestigation): LDNode;
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcInvestigation;
+export declare class TypeExtensions_Conversion {
+    constructor();
+    static arcAssayToDataset(a: ArcAssay): LDNode;
+    static datasetToArcAssay(a: LDNode, graph?: LDGraph, context?: LDContext): ArcAssay;
+    static arcStudyToDataset(a: ArcStudy): LDNode;
+    static datasetToArcStudy(a: LDNode, graph?: LDGraph, context?: LDContext): ArcStudy;
+    static arcInvestigationToDataset(a: ArcInvestigation): LDNode;
+    static datasetToArcInvestigation(a: LDNode, graph?: LDGraph, context?: LDContext): ArcInvestigation;
+}
+export declare function TypeExtensions_Conversion_$reflection(): TypeInfo;
 export declare function ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcAssay;
 export declare function ARCtrl_ROCrate_Dataset__Dataset_fromArcAssay_Static_1501C0F8(a: ArcAssay): LDNode;
 export declare function ARCtrl_ROCrate_Dataset__Dataset_toArcStudy_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcStudy;

package/dist/ts/types/ts/Conversion.d.ts.map

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package/dist/ts/types/ts/Core/Helper/Collections.d.ts

@@ -23,6 +23,9 @@ export declare function Dictionary_addOrUpdate<Key, T>(key: Key, value: T, dict:
 export declare function Dictionary_ofSeq<Key, T>(s: Iterable<[Key, T]>): IMap<Key, T>;
 export declare function Dictionary_tryFind<Key, T>(key: Key, dict: IMap<Key, T>): Option<T>;
 export declare function Dictionary_ofSeqWithMerge<T, Key>(merge: ((arg0: T, arg1: T) => T), s: Iterable<[Key, T]>): IMap<Key, T>;
+export declare function Dictionary_init<Key, T>(): IMap<Key, T>;
+export declare function Dictionary_items<Key, T>(dict: IMap<Key, T>): Iterable<[Key, T]>;
+export declare function StringDictionary_ofSeq(s: Iterable<[string, string]>): IMap<string, string>;
 export declare function ResizeArray_create<T>(i: int32, v: T): T[];
 export declare function ResizeArray_singleton<T>(a: T): T[];
 export declare function ResizeArray_map<$a, $b>(f: ((arg0: $a) => $b), a: $a[]): $b[];

package/dist/ts/types/ts/Core/Helper/Collections.d.ts.map

@@ -1 +1 @@
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