@nfdi4plants/arctrl 3.0.0-alpha.1 → 3.0.0-alpha.3

package/README.md

@@ -68,11 +68,11 @@ On windows you can use the `setup.cmd` to run the following steps automatically!
     
     `py -m venv .venv`
 
-4. Install [Poetry](https://python-poetry.org/) and dependencies
+4. Install [uv](https://docs.astral.sh/uv/) and dependencies
 
    1. `.\.venv\Scripts\python.exe -m pip install -U pip setuptools`
-   2. `.\.venv\Scripts\python.exe -m pip install poetry`
-   3. `.\.venv\Scripts\python.exe -m poetry install --no-root`
+   2. `.\.venv\Scripts\python.exe -m pip install uv`
+   3. `.\.venv\Scripts\python.exe -m uv pip install -r pyproject.toml --group dev`
 
 Verify correct setup with `./build.cmd runtests` ✨
 

package/dist/ts/cjs/index.js

@@ -1,11 +1,13 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.WebController = exports.Contract = exports.Comment = exports.OntologyAnnotation = exports.Publication = exports.Person = exports.XlsxController = exports.JsonController = exports.Templates = exports.Organisation = exports.Template = exports.ArcTable = exports.CompositeColumn = exports.IOType = exports.CompositeHeader = exports.CompositeCell = exports.ArcInvestigation = exports.ArcStudy = exports.ArcAssay = exports.ARC = void 0;
+exports.ROCrate = exports.WebController = exports.Contract = exports.Comment = exports.OntologyAnnotation = exports.Publication = exports.Person = exports.XlsxController = exports.JsonController = exports.Templates = exports.Organisation = exports.Template = exports.ArcTable = exports.CompositeColumn = exports.IOType = exports.CompositeHeader = exports.CompositeCell = exports.ArcInvestigation = exports.ArcWorkflow = exports.ArcRun = exports.ArcStudy = exports.ArcAssay = exports.ARC = void 0;
 var ARC_js_1 = require("./ts/ARC.js");
 Object.defineProperty(exports, "ARC", { enumerable: true, get: function () { return ARC_js_1.ARC; } });
 var ArcTypes_js_1 = require("./ts/Core/ArcTypes.js");
 Object.defineProperty(exports, "ArcAssay", { enumerable: true, get: function () { return ArcTypes_js_1.ArcAssay; } });
 Object.defineProperty(exports, "ArcStudy", { enumerable: true, get: function () { return ArcTypes_js_1.ArcStudy; } });
+Object.defineProperty(exports, "ArcRun", { enumerable: true, get: function () { return ArcTypes_js_1.ArcRun; } });
+Object.defineProperty(exports, "ArcWorkflow", { enumerable: true, get: function () { return ArcTypes_js_1.ArcWorkflow; } });
 Object.defineProperty(exports, "ArcInvestigation", { enumerable: true, get: function () { return ArcTypes_js_1.ArcInvestigation; } });
 var CompositeCell_js_1 = require("./ts/Core/Table/CompositeCell.js");
 Object.defineProperty(exports, "CompositeCell", { enumerable: true, get: function () { return CompositeCell_js_1.CompositeCell; } });
@@ -37,3 +39,47 @@ var Contract_js_1 = require("./ts/Contract/Contract.js");
 Object.defineProperty(exports, "Contract", { enumerable: true, get: function () { return Contract_js_1.Contract; } });
 var Template_Web_js_1 = require("./ts/Template.Web.js");
 Object.defineProperty(exports, "WebController", { enumerable: true, get: function () { return Template_Web_js_1.WebController; } });
+/// RO-Crate
+const LDObject_js_1 = require("./ts/ROCrate/LDObject.js");
+const LDContext_js_1 = require("./ts/ROCrate/LDContext.js");
+const ROCrateContext_js_1 = require("./ts/ROCrate/ROCrateContext.js");
+const Comment_js_2 = require("./ts/ROCrate/Generic/Comment.js");
+const DefinedTerm_js_1 = require("./ts/ROCrate/Generic/DefinedTerm.js");
+const File_js_1 = require("./ts/ROCrate/Generic/File.js");
+const LabProcess_js_1 = require("./ts/ROCrate/Generic/LabProcess.js");
+const LabProtocol_js_1 = require("./ts/ROCrate/Generic/LabProtocol.js");
+const Organization_js_1 = require("./ts/ROCrate/Generic/Organization.js");
+const Person_js_2 = require("./ts/ROCrate/Generic/Person.js");
+const PostalAddress_js_1 = require("./ts/ROCrate/Generic/PostalAddress.js");
+const PropertyValue_js_1 = require("./ts/ROCrate/Generic/PropertyValue.js");
+const Sample_js_1 = require("./ts/ROCrate/Generic/Sample.js");
+const ScholarlyArticle_js_1 = require("./ts/ROCrate/Generic/ScholarlyArticle.js");
+const Dataset_js_1 = require("./ts/ROCrate/Generic/Dataset.js");
+const LDObject_js_2 = require("./ts/JsonIO/LDObject.js");
+const LDObject_js_3 = require("./ts/JsonIO/LDObject.js");
+const Conversion_js_1 = require("./ts/Conversion.js");
+exports.ROCrate = {
+    LDNode: LDObject_js_1.LDNode,
+    LDGraph: LDObject_js_1.LDGraph,
+    LDValue: LDObject_js_1.LDValue,
+    LDRef: LDObject_js_1.LDRef,
+    LDContext: LDContext_js_1.LDContext,
+    initV1_1: ROCrateContext_js_1.initV1_1,
+    initV1_2DRAFT: ROCrateContext_js_1.initV1_2DRAFT,
+    initBioschemasContext: ROCrateContext_js_1.initBioschemasContext,
+    LDComment: Comment_js_2.LDComment,
+    LDDefinedTerm: DefinedTerm_js_1.LDDefinedTerm,
+    LDFile: File_js_1.LDFile,
+    LDLabProcess: LabProcess_js_1.LDLabProcess,
+    LDLabProtocol: LabProtocol_js_1.LDLabProtocol,
+    LDOrganization: Organization_js_1.LDOrganization,
+    LDPerson: Person_js_2.LDPerson,
+    LDPostalAddress: PostalAddress_js_1.LDPostalAddress,
+    LDPropertyValue: PropertyValue_js_1.LDPropertyValue,
+    LDSample: Sample_js_1.LDSample,
+    LDScholarlyArticle: ScholarlyArticle_js_1.LDScholarlyArticle,
+    LDDataset: Dataset_js_1.LDDataset,
+    LDGraphIO: LDObject_js_2.LDGraphExtensions_PyJsInterop,
+    LDNodeIO: LDObject_js_3.LDNodeExtensions_PyJsInterop,
+    Conversion: Conversion_js_1.TypeExtensions_Conversion
+};

package/dist/ts/cjs/ts/Conversion.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.InvestigationConversion = exports.StudyConversion = exports.AssayConversion = exports.ScholarlyArticleConversion = exports.PersonConversion = exports.DatamapConversion = exports.ProcessConversion = exports.BaseTypes = exports.ColumnIndex_orderName = void 0;
+exports.TypeExtensions_Conversion = exports.InvestigationConversion = exports.StudyConversion = exports.AssayConversion = exports.ScholarlyArticleConversion = exports.PersonConversion = exports.DatamapConversion = exports.ProcessConversion = exports.BaseTypes = exports.ColumnIndex_orderName = void 0;
 exports.DateTime_tryFromString = DateTime_tryFromString;
 exports.DateTime_toString = DateTime_toString;
 exports.ColumnIndex_tryGetIndex = ColumnIndex_tryGetIndex;
@@ -102,6 +102,7 @@ exports.ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy = ARCtrl_ArcStudy__ArcStudy_ToR
 exports.ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8 = ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8;
 exports.ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation = ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation;
 exports.ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8 = ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8;
+exports.TypeExtensions_Conversion_$reflection = TypeExtensions_Conversion_$reflection;
 exports.ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8 = ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8;
 exports.ARCtrl_ROCrate_Dataset__Dataset_fromArcAssay_Static_1501C0F8 = ARCtrl_ROCrate_Dataset__Dataset_fromArcAssay_Static_1501C0F8;
 exports.ARCtrl_ROCrate_Dataset__Dataset_toArcStudy_Static_Z6839B9E8 = ARCtrl_ROCrate_Dataset__Dataset_toArcStudy_Static_Z6839B9E8;
@@ -1680,6 +1681,32 @@ function ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation(this$)
 function ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a, graph, context) {
     return InvestigationConversion_decomposeInvestigation_Z6839B9E8(a, (0, Option_js_1.unwrap)(graph), (0, Option_js_1.unwrap)(context));
 }
+class TypeExtensions_Conversion {
+    constructor() {
+    }
+    static arcAssayToDataset(a) {
+        return ARCtrl_ArcAssay__ArcAssay_ToROCrateAssay(a);
+    }
+    static datasetToArcAssay(a, graph, context) {
+        return ARCtrl_ArcAssay__ArcAssay_fromROCrateAssay_Static_Z6839B9E8(a, (0, Option_js_1.unwrap)(graph), (0, Option_js_1.unwrap)(context));
+    }
+    static arcStudyToDataset(a) {
+        return ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy(a);
+    }
+    static datasetToArcStudy(a, graph, context) {
+        return ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8(a, (0, Option_js_1.unwrap)(graph), (0, Option_js_1.unwrap)(context));
+    }
+    static arcInvestigationToDataset(a) {
+        return ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation(a);
+    }
+    static datasetToArcInvestigation(a, graph, context) {
+        return ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a, (0, Option_js_1.unwrap)(graph), (0, Option_js_1.unwrap)(context));
+    }
+}
+exports.TypeExtensions_Conversion = TypeExtensions_Conversion;
+function TypeExtensions_Conversion_$reflection() {
+    return (0, Reflection_js_1.class_type)("ARCtrl.Conversion.TypeExtensions.Conversion", undefined, TypeExtensions_Conversion);
+}
 function ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8(a, graph, context) {
     return AssayConversion_decomposeAssay_Z6839B9E8(a, (0, Option_js_1.unwrap)(graph), (0, Option_js_1.unwrap)(context));
 }

package/dist/ts/cjs/ts/JsonIO/LDObject.js

@@ -0,0 +1,107 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.LDGraphExtensions_PyJsInterop = exports.LDNodeExtensions_PyJsInterop = void 0;
+exports.ARCtrl_ROCrate_LDNode__LDNode_fromROCrateJsonString_Static_Z721C83C5 = ARCtrl_ROCrate_LDNode__LDNode_fromROCrateJsonString_Static_Z721C83C5;
+exports.ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F = ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F;
+exports.ARCtrl_ROCrate_LDNode__LDNode_ToROCrateJsonString_71136F3F = ARCtrl_ROCrate_LDNode__LDNode_ToROCrateJsonString_71136F3F;
+exports.LDNodeExtensions_PyJsInterop_$reflection = LDNodeExtensions_PyJsInterop_$reflection;
+exports.ARCtrl_ROCrate_LDGraph__LDGraph_fromROCrateJsonString_Static_Z721C83C5 = ARCtrl_ROCrate_LDGraph__LDGraph_fromROCrateJsonString_Static_Z721C83C5;
+exports.ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F = ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F;
+exports.ARCtrl_ROCrate_LDGraph__LDGraph_ToROCrateJsonString_71136F3F = ARCtrl_ROCrate_LDGraph__LDGraph_ToROCrateJsonString_71136F3F;
+exports.LDGraphExtensions_PyJsInterop_$reflection = LDGraphExtensions_PyJsInterop_$reflection;
+const Decode_fs_js_1 = require("../fable_modules/Thoth.Json.JavaScript.0.3.0/Decode.fs.js");
+const LDNode_js_1 = require("../Json/ROCrate/LDNode.js");
+const String_js_1 = require("@fable-org/fable-library-js/String.js");
+const Encode_fs_js_1 = require("../fable_modules/Thoth.Json.JavaScript.0.3.0/Encode.fs.js");
+const Encode_js_1 = require("../Json/Encode.js");
+const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
+const Reflection_js_1 = require("@fable-org/fable-library-js/Reflection.js");
+const LDGraph_js_1 = require("../Json/ROCrate/LDGraph.js");
+function ARCtrl_ROCrate_LDNode__LDNode_fromROCrateJsonString_Static_Z721C83C5(s) {
+    let arg;
+    const matchValue = (0, Decode_fs_js_1.fromString)(LDNode_js_1.decoder, s);
+    if (matchValue.tag === /* Error */ 1) {
+        throw new Error((arg = matchValue.fields[0], (0, String_js_1.toText)((0, String_js_1.printf)("Error decoding string: %O"))(arg)));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+/**
+ * exports in json-ld format
+ */
+function ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F(spaces) {
+    return (obj) => {
+        const value = (0, LDNode_js_1.encoder)(obj);
+        return (0, Encode_fs_js_1.toString)((0, Encode_js_1.defaultSpaces)(spaces), value);
+    };
+}
+function ARCtrl_ROCrate_LDNode__LDNode_ToROCrateJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F((0, Option_js_1.unwrap)(spaces))(this$);
+}
+class LDNodeExtensions_PyJsInterop {
+    constructor() {
+    }
+    static fromROCrateJsonString(s) {
+        let arg;
+        const matchValue = (0, Decode_fs_js_1.fromString)(LDNode_js_1.decoder, s);
+        if (matchValue.tag === /* Error */ 1) {
+            throw new Error((arg = matchValue.fields[0], (0, String_js_1.toText)((0, String_js_1.printf)("Error decoding string: %O"))(arg)));
+        }
+        else {
+            return matchValue.fields[0];
+        }
+    }
+    static toROCrateJsonString(node, spaces) {
+        const value = (0, LDNode_js_1.encoder)(node);
+        return (0, Encode_fs_js_1.toString)((0, Encode_js_1.defaultSpaces)(spaces), value);
+    }
+}
+exports.LDNodeExtensions_PyJsInterop = LDNodeExtensions_PyJsInterop;
+function LDNodeExtensions_PyJsInterop_$reflection() {
+    return (0, Reflection_js_1.class_type)("ARCtrl.Json.LDNodeExtensions.PyJsInterop", undefined, LDNodeExtensions_PyJsInterop);
+}
+function ARCtrl_ROCrate_LDGraph__LDGraph_fromROCrateJsonString_Static_Z721C83C5(s) {
+    let arg;
+    const matchValue = (0, Decode_fs_js_1.fromString)(LDGraph_js_1.decoder, s);
+    if (matchValue.tag === /* Error */ 1) {
+        throw new Error((arg = matchValue.fields[0], (0, String_js_1.toText)((0, String_js_1.printf)("Error decoding string: %O"))(arg)));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+/**
+ * exports in json-ld format
+ */
+function ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F(spaces) {
+    return (obj) => {
+        const value = (0, LDGraph_js_1.encoder)(obj);
+        return (0, Encode_fs_js_1.toString)((0, Encode_js_1.defaultSpaces)(spaces), value);
+    };
+}
+function ARCtrl_ROCrate_LDGraph__LDGraph_ToROCrateJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F((0, Option_js_1.unwrap)(spaces))(this$);
+}
+class LDGraphExtensions_PyJsInterop {
+    constructor() {
+    }
+    static fromROCrateJsonString(s) {
+        let arg;
+        const matchValue = (0, Decode_fs_js_1.fromString)(LDGraph_js_1.decoder, s);
+        if (matchValue.tag === /* Error */ 1) {
+            throw new Error((arg = matchValue.fields[0], (0, String_js_1.toText)((0, String_js_1.printf)("Error decoding string: %O"))(arg)));
+        }
+        else {
+            return matchValue.fields[0];
+        }
+    }
+    static toROCrateJsonString(graph, spaces) {
+        const value = (0, LDGraph_js_1.encoder)(graph);
+        return (0, Encode_fs_js_1.toString)((0, Encode_js_1.defaultSpaces)(spaces), value);
+    }
+}
+exports.LDGraphExtensions_PyJsInterop = LDGraphExtensions_PyJsInterop;
+function LDGraphExtensions_PyJsInterop_$reflection() {
+    return (0, Reflection_js_1.class_type)("ARCtrl.Json.LDGraphExtensions.PyJsInterop", undefined, LDGraphExtensions_PyJsInterop);
+}

package/dist/ts/esm/index.js

@@ -1,5 +1,5 @@
 export { ARC } from './ts/ARC.js';
-export { ArcAssay, ArcStudy, ArcInvestigation } from './ts/Core/ArcTypes.js';
+export { ArcAssay, ArcStudy, ArcRun, ArcWorkflow, ArcInvestigation } from './ts/Core/ArcTypes.js';
 export { CompositeCell } from './ts/Core/Table/CompositeCell.js';
 export { CompositeHeader, IOType } from './ts/Core/Table/CompositeHeader.js';
 export { CompositeColumn } from './ts/Core/Table/CompositeColumn.js';
@@ -14,3 +14,47 @@ export { OntologyAnnotation } from './ts/Core/OntologyAnnotation.js';
 export { Comment$ as Comment } from './ts/Core/Comment.js';
 export { Contract } from './ts/Contract/Contract.js';
 export { WebController } from './ts/Template.Web.js';
+/// RO-Crate
+import { LDNode, LDGraph, LDRef, LDValue } from './ts/ROCrate/LDObject.js';
+import { LDContext } from './ts/ROCrate/LDContext.js';
+import { initV1_1, initV1_2DRAFT, initBioschemasContext } from './ts/ROCrate/ROCrateContext.js';
+import { LDComment } from './ts/ROCrate/Generic/Comment.js';
+import { LDDefinedTerm } from './ts/ROCrate/Generic/DefinedTerm.js';
+import { LDFile } from './ts/ROCrate/Generic/File.js';
+import { LDLabProcess } from './ts/ROCrate/Generic/LabProcess.js';
+import { LDLabProtocol } from './ts/ROCrate/Generic/LabProtocol.js';
+import { LDOrganization } from './ts/ROCrate/Generic/Organization.js';
+import { LDPerson } from './ts/ROCrate/Generic/Person.js';
+import { LDPostalAddress } from './ts/ROCrate/Generic/PostalAddress.js';
+import { LDPropertyValue } from './ts/ROCrate/Generic/PropertyValue.js';
+import { LDSample } from './ts/ROCrate/Generic/Sample.js';
+import { LDScholarlyArticle } from './ts/ROCrate/Generic/ScholarlyArticle.js';
+import { LDDataset } from './ts/ROCrate/Generic/Dataset.js';
+import { LDGraphExtensions_PyJsInterop as LDGraphIO } from './ts/JsonIO/LDObject.js';
+import { LDNodeExtensions_PyJsInterop as LDNodeIO } from './ts/JsonIO/LDObject.js';
+import { TypeExtensions_Conversion as Conversion } from './ts/Conversion.js';
+export const ROCrate = {
+    LDNode,
+    LDGraph,
+    LDValue,
+    LDRef,
+    LDContext,
+    initV1_1,
+    initV1_2DRAFT,
+    initBioschemasContext,
+    LDComment,
+    LDDefinedTerm,
+    LDFile,
+    LDLabProcess,
+    LDLabProtocol,
+    LDOrganization,
+    LDPerson,
+    LDPostalAddress,
+    LDPropertyValue,
+    LDSample,
+    LDScholarlyArticle,
+    LDDataset,
+    LDGraphIO,
+    LDNodeIO,
+    Conversion
+};

package/dist/ts/esm/ts/Conversion.js

@@ -1562,6 +1562,31 @@ export function ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation
 export function ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a, graph, context) {
     return InvestigationConversion_decomposeInvestigation_Z6839B9E8(a, unwrap(graph), unwrap(context));
 }
+export class TypeExtensions_Conversion {
+    constructor() {
+    }
+    static arcAssayToDataset(a) {
+        return ARCtrl_ArcAssay__ArcAssay_ToROCrateAssay(a);
+    }
+    static datasetToArcAssay(a, graph, context) {
+        return ARCtrl_ArcAssay__ArcAssay_fromROCrateAssay_Static_Z6839B9E8(a, unwrap(graph), unwrap(context));
+    }
+    static arcStudyToDataset(a) {
+        return ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy(a);
+    }
+    static datasetToArcStudy(a, graph, context) {
+        return ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8(a, unwrap(graph), unwrap(context));
+    }
+    static arcInvestigationToDataset(a) {
+        return ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation(a);
+    }
+    static datasetToArcInvestigation(a, graph, context) {
+        return ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a, unwrap(graph), unwrap(context));
+    }
+}
+export function TypeExtensions_Conversion_$reflection() {
+    return class_type("ARCtrl.Conversion.TypeExtensions.Conversion", undefined, TypeExtensions_Conversion);
+}
 export function ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8(a, graph, context) {
     return AssayConversion_decomposeAssay_Z6839B9E8(a, unwrap(graph), unwrap(context));
 }

package/dist/ts/esm/ts/JsonIO/LDObject.js

@@ -0,0 +1,94 @@
+import { fromString } from "../fable_modules/Thoth.Json.JavaScript.0.3.0/Decode.fs.js";
+import { encoder, decoder as decoder_1 } from "../Json/ROCrate/LDNode.js";
+import { printf, toText } from "@fable-org/fable-library-js/String.js";
+import { toString } from "../fable_modules/Thoth.Json.JavaScript.0.3.0/Encode.fs.js";
+import { defaultSpaces } from "../Json/Encode.js";
+import { unwrap } from "@fable-org/fable-library-js/Option.js";
+import { class_type } from "@fable-org/fable-library-js/Reflection.js";
+import { encoder as encoder_1, decoder as decoder_2 } from "../Json/ROCrate/LDGraph.js";
+export function ARCtrl_ROCrate_LDNode__LDNode_fromROCrateJsonString_Static_Z721C83C5(s) {
+    let arg;
+    const matchValue = fromString(decoder_1, s);
+    if (matchValue.tag === /* Error */ 1) {
+        throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+/**
+ * exports in json-ld format
+ */
+export function ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F(spaces) {
+    return (obj) => {
+        const value = encoder(obj);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+export function ARCtrl_ROCrate_LDNode__LDNode_ToROCrateJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F(unwrap(spaces))(this$);
+}
+export class LDNodeExtensions_PyJsInterop {
+    constructor() {
+    }
+    static fromROCrateJsonString(s) {
+        let arg;
+        const matchValue = fromString(decoder_1, s);
+        if (matchValue.tag === /* Error */ 1) {
+            throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+        }
+        else {
+            return matchValue.fields[0];
+        }
+    }
+    static toROCrateJsonString(node, spaces) {
+        const value = encoder(node);
+        return toString(defaultSpaces(spaces), value);
+    }
+}
+export function LDNodeExtensions_PyJsInterop_$reflection() {
+    return class_type("ARCtrl.Json.LDNodeExtensions.PyJsInterop", undefined, LDNodeExtensions_PyJsInterop);
+}
+export function ARCtrl_ROCrate_LDGraph__LDGraph_fromROCrateJsonString_Static_Z721C83C5(s) {
+    let arg;
+    const matchValue = fromString(decoder_2, s);
+    if (matchValue.tag === /* Error */ 1) {
+        throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+    }
+    else {
+        return matchValue.fields[0];
+    }
+}
+/**
+ * exports in json-ld format
+ */
+export function ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F(spaces) {
+    return (obj) => {
+        const value = encoder_1(obj);
+        return toString(defaultSpaces(spaces), value);
+    };
+}
+export function ARCtrl_ROCrate_LDGraph__LDGraph_ToROCrateJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F(unwrap(spaces))(this$);
+}
+export class LDGraphExtensions_PyJsInterop {
+    constructor() {
+    }
+    static fromROCrateJsonString(s) {
+        let arg;
+        const matchValue = fromString(decoder_2, s);
+        if (matchValue.tag === /* Error */ 1) {
+            throw new Error((arg = matchValue.fields[0], toText(printf("Error decoding string: %O"))(arg)));
+        }
+        else {
+            return matchValue.fields[0];
+        }
+    }
+    static toROCrateJsonString(graph, spaces) {
+        const value = encoder_1(graph);
+        return toString(defaultSpaces(spaces), value);
+    }
+}
+export function LDGraphExtensions_PyJsInterop_$reflection() {
+    return class_type("ARCtrl.Json.LDGraphExtensions.PyJsInterop", undefined, LDGraphExtensions_PyJsInterop);
+}

package/dist/ts/types/index.d.ts

@@ -1,5 +1,5 @@
 export { ARC } from './ts/ARC.js';
-export { ArcAssay, ArcStudy, ArcInvestigation } from './ts/Core/ArcTypes.js';
+export { ArcAssay, ArcStudy, ArcRun, ArcWorkflow, ArcInvestigation } from './ts/Core/ArcTypes.js';
 export { CompositeCell } from './ts/Core/Table/CompositeCell.js';
 export { CompositeHeader, IOType } from './ts/Core/Table/CompositeHeader.js';
 export { CompositeColumn } from './ts/Core/Table/CompositeColumn.js';
@@ -14,4 +14,47 @@ export { OntologyAnnotation } from './ts/Core/OntologyAnnotation.js';
 export { Comment$ as Comment } from './ts/Core/Comment.js';
 export { Contract } from './ts/Contract/Contract.js';
 export { WebController } from './ts/Template.Web.js';
+import { LDNode, LDGraph, LDRef, LDValue } from './ts/ROCrate/LDObject.js';
+import { LDContext } from './ts/ROCrate/LDContext.js';
+import { initV1_1, initV1_2DRAFT, initBioschemasContext } from './ts/ROCrate/ROCrateContext.js';
+import { LDComment } from './ts/ROCrate/Generic/Comment.js';
+import { LDDefinedTerm } from './ts/ROCrate/Generic/DefinedTerm.js';
+import { LDFile } from './ts/ROCrate/Generic/File.js';
+import { LDLabProcess } from './ts/ROCrate/Generic/LabProcess.js';
+import { LDLabProtocol } from './ts/ROCrate/Generic/LabProtocol.js';
+import { LDOrganization } from './ts/ROCrate/Generic/Organization.js';
+import { LDPerson } from './ts/ROCrate/Generic/Person.js';
+import { LDPostalAddress } from './ts/ROCrate/Generic/PostalAddress.js';
+import { LDPropertyValue } from './ts/ROCrate/Generic/PropertyValue.js';
+import { LDSample } from './ts/ROCrate/Generic/Sample.js';
+import { LDScholarlyArticle } from './ts/ROCrate/Generic/ScholarlyArticle.js';
+import { LDDataset } from './ts/ROCrate/Generic/Dataset.js';
+import { LDGraphExtensions_PyJsInterop as LDGraphIO } from './ts/JsonIO/LDObject.js';
+import { LDNodeExtensions_PyJsInterop as LDNodeIO } from './ts/JsonIO/LDObject.js';
+import { TypeExtensions_Conversion as Conversion } from './ts/Conversion.js';
+export declare const ROCrate: {
+    LDNode: typeof LDNode;
+    LDGraph: typeof LDGraph;
+    LDValue: typeof LDValue;
+    LDRef: typeof LDRef;
+    LDContext: typeof LDContext;
+    initV1_1: typeof initV1_1;
+    initV1_2DRAFT: typeof initV1_2DRAFT;
+    initBioschemasContext: typeof initBioschemasContext;
+    LDComment: typeof LDComment;
+    LDDefinedTerm: typeof LDDefinedTerm;
+    LDFile: typeof LDFile;
+    LDLabProcess: typeof LDLabProcess;
+    LDLabProtocol: typeof LDLabProtocol;
+    LDOrganization: typeof LDOrganization;
+    LDPerson: typeof LDPerson;
+    LDPostalAddress: typeof LDPostalAddress;
+    LDPropertyValue: typeof LDPropertyValue;
+    LDSample: typeof LDSample;
+    LDScholarlyArticle: typeof LDScholarlyArticle;
+    LDDataset: typeof LDDataset;
+    LDGraphIO: typeof LDGraphIO;
+    LDNodeIO: typeof LDNodeIO;
+    Conversion: typeof Conversion;
+};
 //# sourceMappingURL=index.d.ts.map

package/dist/ts/types/index.d.ts.map

@@ -1 +1 @@
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package/dist/ts/types/ts/Conversion.d.ts

@@ -273,6 +273,16 @@ export declare function ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy(this$: ArcStudy
 export declare function ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcStudy;
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation(this$: ArcInvestigation): LDNode;
 export declare function ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcInvestigation;
+export declare class TypeExtensions_Conversion {
+    constructor();
+    static arcAssayToDataset(a: ArcAssay): LDNode;
+    static datasetToArcAssay(a: LDNode, graph?: LDGraph, context?: LDContext): ArcAssay;
+    static arcStudyToDataset(a: ArcStudy): LDNode;
+    static datasetToArcStudy(a: LDNode, graph?: LDGraph, context?: LDContext): ArcStudy;
+    static arcInvestigationToDataset(a: ArcInvestigation): LDNode;
+    static datasetToArcInvestigation(a: LDNode, graph?: LDGraph, context?: LDContext): ArcInvestigation;
+}
+export declare function TypeExtensions_Conversion_$reflection(): TypeInfo;
 export declare function ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcAssay;
 export declare function ARCtrl_ROCrate_Dataset__Dataset_fromArcAssay_Static_1501C0F8(a: ArcAssay): LDNode;
 export declare function ARCtrl_ROCrate_Dataset__Dataset_toArcStudy_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcStudy;

package/dist/ts/types/ts/Conversion.d.ts.map

@@ -1 +1 @@
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package/dist/ts/types/ts/JsonIO/LDObject.d.ts

@@ -0,0 +1,29 @@
+import { LDGraph, LDNode } from "../ROCrate/LDObject.js";
+import { int32 } from "@fable-org/fable-library-js/Int32.js";
+import { Option } from "@fable-org/fable-library-js/Option.js";
+import { TypeInfo } from "@fable-org/fable-library-js/Reflection.js";
+export declare function ARCtrl_ROCrate_LDNode__LDNode_fromROCrateJsonString_Static_Z721C83C5(s: string): LDNode;
+/**
+ * exports in json-ld format
+ */
+export declare function ARCtrl_ROCrate_LDNode__LDNode_toROCrateJsonString_Static_71136F3F(spaces?: int32): ((arg0: LDNode) => string);
+export declare function ARCtrl_ROCrate_LDNode__LDNode_ToROCrateJsonString_71136F3F(this$: LDNode, spaces: Option<int32>): string;
+export declare class LDNodeExtensions_PyJsInterop {
+    constructor();
+    static fromROCrateJsonString(s: string): LDNode;
+    static toROCrateJsonString(node: LDNode, spaces?: int32): string;
+}
+export declare function LDNodeExtensions_PyJsInterop_$reflection(): TypeInfo;
+export declare function ARCtrl_ROCrate_LDGraph__LDGraph_fromROCrateJsonString_Static_Z721C83C5(s: string): LDGraph;
+/**
+ * exports in json-ld format
+ */
+export declare function ARCtrl_ROCrate_LDGraph__LDGraph_toROCrateJsonString_Static_71136F3F(spaces?: int32): ((arg0: LDGraph) => string);
+export declare function ARCtrl_ROCrate_LDGraph__LDGraph_ToROCrateJsonString_71136F3F(this$: LDGraph, spaces: Option<int32>): string;
+export declare class LDGraphExtensions_PyJsInterop {
+    constructor();
+    static fromROCrateJsonString(s: string): LDGraph;
+    static toROCrateJsonString(graph: LDGraph, spaces?: int32): string;
+}
+export declare function LDGraphExtensions_PyJsInterop_$reflection(): TypeInfo;
+//# sourceMappingURL=LDObject.d.ts.map

package/dist/ts/types/ts/JsonIO/LDObject.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"LDObject.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/JsonIO/LDObject.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,wBAAwB,CAAC;AAMzD,OAAO,EAAE,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAC7D,OAAO,EAAE,MAAM,EAAU,MAAM,uCAAuC,CAAC;AACvE,OAAO,EAAc,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAGjF,wBAAgB,oEAAoE,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAStG;AAED;;GAEG;AACH,wBAAgB,iEAAiE,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,CAK5H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAEvH;AAED,qBAAa,4BAA4B;;IAGrC,MAAM,CAAC,qBAAqB,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM;IAU/C,MAAM,CAAC,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;CAInE;AAED,wBAAgB,wCAAwC,IAAI,QAAQ,CAEnE;AAED,wBAAgB,sEAAsE,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO,CASzG;AAED;;GAEG;AACH,wBAAgB,mEAAmE,CAAC,MAAM,CAAC,EAAE,KAAK,GAAG,CAAC,CAAC,IAAI,EAAE,OAAO,KAAK,MAAM,CAAC,CAK/H;AAED,wBAAgB,4DAA4D,CAAC,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,KAAK,CAAC,GAAG,MAAM,CAE1H;AAED,qBAAa,6BAA6B;;IAGtC,MAAM,CAAC,qBAAqB,CAAC,CAAC,EAAE,MAAM,GAAG,OAAO;IAUhD,MAAM,CAAC,mBAAmB,CAAC,KAAK,EAAE,OAAO,EAAE,MAAM,CAAC,EAAE,KAAK,GAAG,MAAM;CAIrE;AAED,wBAAgB,yCAAyC,IAAI,QAAQ,CAEpE"}

package/package.json

@@ -1,7 +1,7 @@
 {
   "type": "module",
   "name": "@nfdi4plants/arctrl",
-  "version": "3.0.0-alpha.1",
+  "version": "3.0.0-alpha.3",
   "description": "Top level ARC DataModel and API function descriptions.",
   "repository": {
     "type": "git",
@@ -18,9 +18,9 @@
   ],
   "main": "./dist/ts/cjs/index.js",
   "module": "./dist/ts/esm/index.js",
-  "types": "./dist/ts/types/index.d.ts",
   "exports": {
     ".": {
+      "types": "./dist/ts/types/index.d.ts",
       "import": "./dist/ts/esm/index.js",
       "require": "./dist/ts/cjs/index.js"
     }