@nfdi4plants/arctrl 2.5.0 → 3.0.0-alpha.1

package/CWL/Outputs.js

@@ -1,59 +0,0 @@
-import { FSharpRef, Record } from "../fable_modules/fable-library-js.4.24.0/Types.js";
-import { class_type, record_type, option_type, string_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
-import { value, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
-import { CWLType } from "./CWLTypes.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.24.0/Util.js";
-import { setOptionalProperty } from "../fable_modules/DynamicObj.7.0.1/DynObj.fs.js";
-import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.7.0.1/DynamicObj.fs.js";
-
-export class OutputBinding extends Record {
-    constructor(Glob) {
-        super();
-        this.Glob = Glob;
-    }
-}
-
-export function OutputBinding_$reflection() {
-    return record_type("ARCtrl.CWL.OutputBinding", [], OutputBinding, () => [["Glob", option_type(string_type)]]);
-}
-
-export class CWLOutput extends DynamicObj {
-    constructor(name, type_, outputBinding, outputSource) {
-        super();
-        const this$ = new FSharpRef(defaultOf());
-        this.name = name;
-        this$.contents = this;
-        this["init@11"] = 1;
-        setOptionalProperty("type", type_, this$.contents);
-        setOptionalProperty("outputBinding", outputBinding, this$.contents);
-        setOptionalProperty("outputSource", outputSource, this$.contents);
-    }
-    get Name() {
-        const this$ = this;
-        return this$.name;
-    }
-    get Type_() {
-        let matchValue, o;
-        const this$ = this;
-        return unwrap((matchValue = this$.TryGetPropertyValue("type"), (matchValue != null) ? ((o = value(matchValue), (o instanceof CWLType) ? o : undefined)) : undefined));
-    }
-    get OutputBinding() {
-        let matchValue, o;
-        const this$ = this;
-        return unwrap((matchValue = this$.TryGetPropertyValue("outputBinding"), (matchValue != null) ? ((o = value(matchValue), (o instanceof OutputBinding) ? o : undefined)) : undefined));
-    }
-    get OutputSource() {
-        let matchValue, o;
-        const this$ = this;
-        return unwrap((matchValue = this$.TryGetPropertyValue("outputSource"), (matchValue != null) ? ((o = value(matchValue), (typeof o === "string") ? o : undefined)) : undefined));
-    }
-}
-
-export function CWLOutput_$reflection() {
-    return class_type("ARCtrl.CWL.CWLOutput", undefined, CWLOutput, DynamicObj_$reflection());
-}
-
-export function CWLOutput_$ctor_744035D(name, type_, outputBinding, outputSource) {
-    return new CWLOutput(name, type_, outputBinding, outputSource);
-}
-

package/CWL/Requirements.js

@@ -1,72 +0,0 @@
-import { Union, FSharpRef, Record } from "../fable_modules/fable-library-js.4.24.0/Types.js";
-import { union_type, float64_type, array_type, record_type, class_type, option_type, string_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.24.0/Util.js";
-import { setOptionalProperty } from "../fable_modules/DynamicObj.7.0.1/DynObj.fs.js";
-import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.7.0.1/DynamicObj.fs.js";
-import { CWLType_$reflection, SoftwarePackage_$reflection, SchemaDefRequirementType_$reflection } from "./CWLTypes.js";
-
-export class DockerRequirement extends Record {
-    constructor(DockerPull, DockerFile, DockerImageId) {
-        super();
-        this.DockerPull = DockerPull;
-        this.DockerFile = DockerFile;
-        this.DockerImageId = DockerImageId;
-    }
-}
-
-export function DockerRequirement_$reflection() {
-    return record_type("ARCtrl.CWL.DockerRequirement", [], DockerRequirement, () => [["DockerPull", option_type(string_type)], ["DockerFile", option_type(class_type("Microsoft.FSharp.Collections.FSharpMap`2", [string_type, string_type]))], ["DockerImageId", option_type(string_type)]]);
-}
-
-export class EnvironmentDef extends Record {
-    constructor(EnvName, EnvValue) {
-        super();
-        this.EnvName = EnvName;
-        this.EnvValue = EnvValue;
-    }
-}
-
-export function EnvironmentDef_$reflection() {
-    return record_type("ARCtrl.CWL.EnvironmentDef", [], EnvironmentDef, () => [["EnvName", string_type], ["EnvValue", string_type]]);
-}
-
-export class ResourceRequirementInstance extends DynamicObj {
-    constructor(coresMin, coresMax, ramMin, ramMax, tmpdirMin, tmpdirMax, outdirMin, outdirMax) {
-        super();
-        const this$ = new FSharpRef(defaultOf());
-        this$.contents = this;
-        this["init@24"] = 1;
-        setOptionalProperty("coresMin", coresMin, this$.contents);
-        setOptionalProperty("coresMax", coresMax, this$.contents);
-        setOptionalProperty("ramMin", ramMin, this$.contents);
-        setOptionalProperty("ramMax", ramMax, this$.contents);
-        setOptionalProperty("tmpdirMin", tmpdirMin, this$.contents);
-        setOptionalProperty("tmpdirMax", tmpdirMax, this$.contents);
-        setOptionalProperty("outdirMin", outdirMin, this$.contents);
-        setOptionalProperty("outdirMax", outdirMax, this$.contents);
-    }
-}
-
-export function ResourceRequirementInstance_$reflection() {
-    return class_type("ARCtrl.CWL.ResourceRequirementInstance", undefined, ResourceRequirementInstance, DynamicObj_$reflection());
-}
-
-export function ResourceRequirementInstance_$ctor_D76FC00(coresMin, coresMax, ramMin, ramMax, tmpdirMin, tmpdirMax, outdirMin, outdirMax) {
-    return new ResourceRequirementInstance(coresMin, coresMax, ramMin, ramMax, tmpdirMin, tmpdirMax, outdirMin, outdirMax);
-}
-
-export class Requirement extends Union {
-    constructor(tag, fields) {
-        super();
-        this.tag = tag;
-        this.fields = fields;
-    }
-    cases() {
-        return ["InlineJavascriptRequirement", "SchemaDefRequirement", "DockerRequirement", "SoftwareRequirement", "InitialWorkDirRequirement", "EnvVarRequirement", "ShellCommandRequirement", "ResourceRequirement", "WorkReuseRequirement", "NetworkAccessRequirement", "InplaceUpdateRequirement", "ToolTimeLimitRequirement", "SubworkflowFeatureRequirement", "ScatterFeatureRequirement", "MultipleInputFeatureRequirement", "StepInputExpressionRequirement"];
-    }
-}
-
-export function Requirement_$reflection() {
-    return union_type("ARCtrl.CWL.Requirement", [], Requirement, () => [[], [["Item", array_type(SchemaDefRequirementType_$reflection())]], [["Item", DockerRequirement_$reflection()]], [["Item", array_type(SoftwarePackage_$reflection())]], [["Item", array_type(CWLType_$reflection())]], [["Item", array_type(EnvironmentDef_$reflection())]], [], [["Item", ResourceRequirementInstance_$reflection()]], [], [], [], [["Item", float64_type]], [], [], [], []]);
-}
-

package/CWL/ToolDescription.js

@@ -1,81 +0,0 @@
-import { defaultArg, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
-import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.7.0.1/DynamicObj.fs.js";
-import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
-
-export class CWLToolDescription extends DynamicObj {
-    constructor(outputs, cwlVersion, baseCommand, requirements, hints, inputs, metadata) {
-        super();
-        this._cwlVersion = defaultArg(cwlVersion, "v1.2");
-        this._outputs = outputs;
-        this._baseCommand = baseCommand;
-        this._requirements = requirements;
-        this._hints = hints;
-        this._inputs = inputs;
-        this._metadata = metadata;
-    }
-    get CWLVersion() {
-        const this$ = this;
-        return this$._cwlVersion;
-    }
-    set CWLVersion(version) {
-        const this$ = this;
-        this$._cwlVersion = version;
-    }
-    get Outputs() {
-        const this$ = this;
-        return this$._outputs;
-    }
-    set Outputs(outputs) {
-        const this$ = this;
-        this$._outputs = outputs;
-    }
-    get BaseCommand() {
-        const this$ = this;
-        return unwrap(this$._baseCommand);
-    }
-    set BaseCommand(baseCommand) {
-        const this$ = this;
-        this$._baseCommand = baseCommand;
-    }
-    get Requirements() {
-        const this$ = this;
-        return unwrap(this$._requirements);
-    }
-    set Requirements(requirements) {
-        const this$ = this;
-        this$._requirements = requirements;
-    }
-    get Hints() {
-        const this$ = this;
-        return unwrap(this$._hints);
-    }
-    set Hints(hints) {
-        const this$ = this;
-        this$._hints = hints;
-    }
-    get Inputs() {
-        const this$ = this;
-        return unwrap(this$._inputs);
-    }
-    set Inputs(inputs) {
-        const this$ = this;
-        this$._inputs = inputs;
-    }
-    get Metadata() {
-        const this$ = this;
-        return unwrap(this$._metadata);
-    }
-    set Metadata(metadata) {
-        const this$ = this;
-        this$._metadata = metadata;
-    }
-}
-
-export function CWLToolDescription_$reflection() {
-    return class_type("ARCtrl.CWL.CWLToolDescription", undefined, CWLToolDescription, DynamicObj_$reflection());
-}
-
-export function CWLToolDescription_$ctor_Z3224DB85(outputs, cwlVersion, baseCommand, requirements, hints, inputs, metadata) {
-    return new CWLToolDescription(outputs, cwlVersion, baseCommand, requirements, hints, inputs, metadata);
-}
-

package/CWL/WorkflowDescription.js

@@ -1,81 +0,0 @@
-import { defaultArg, unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
-import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.7.0.1/DynamicObj.fs.js";
-import { class_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
-
-export class CWLWorkflowDescription extends DynamicObj {
-    constructor(steps, inputs, outputs, cwlVersion, requirements, hints, metadata) {
-        super();
-        this._cwlVersion = defaultArg(cwlVersion, "v1.2");
-        this._steps = steps;
-        this._inputs = inputs;
-        this._outputs = outputs;
-        this._requirements = requirements;
-        this._hints = hints;
-        this._metadata = metadata;
-    }
-    get CWLVersion() {
-        const this$ = this;
-        return this$._cwlVersion;
-    }
-    set CWLVersion(version) {
-        const this$ = this;
-        this$._cwlVersion = version;
-    }
-    get Steps() {
-        const this$ = this;
-        return this$._steps;
-    }
-    set Steps(steps) {
-        const this$ = this;
-        this$._steps = steps;
-    }
-    get Inputs() {
-        const this$ = this;
-        return this$._inputs;
-    }
-    set Inputs(inputs) {
-        const this$ = this;
-        this$._inputs = inputs;
-    }
-    get Outputs() {
-        const this$ = this;
-        return this$._outputs;
-    }
-    set Outputs(outputs) {
-        const this$ = this;
-        this$._outputs = outputs;
-    }
-    get Requirements() {
-        const this$ = this;
-        return unwrap(this$._requirements);
-    }
-    set Requirements(requirements) {
-        const this$ = this;
-        this$._requirements = requirements;
-    }
-    get Hints() {
-        const this$ = this;
-        return unwrap(this$._hints);
-    }
-    set Hints(hints) {
-        const this$ = this;
-        this$._hints = hints;
-    }
-    get Metadata() {
-        const this$ = this;
-        return unwrap(this$._metadata);
-    }
-    set Metadata(metadata) {
-        const this$ = this;
-        this$._metadata = metadata;
-    }
-}
-
-export function CWLWorkflowDescription_$reflection() {
-    return class_type("ARCtrl.CWL.CWLWorkflowDescription", undefined, CWLWorkflowDescription, DynamicObj_$reflection());
-}
-
-export function CWLWorkflowDescription_$ctor_704BBD06(steps, inputs, outputs, cwlVersion, requirements, hints, metadata) {
-    return new CWLWorkflowDescription(steps, inputs, outputs, cwlVersion, requirements, hints, metadata);
-}
-

package/CWL/WorkflowSteps.js

@@ -1,98 +0,0 @@
-import { Record } from "../fable_modules/fable-library-js.4.24.0/Types.js";
-import { class_type, array_type, record_type, option_type, string_type } from "../fable_modules/fable-library-js.4.24.0/Reflection.js";
-import { unwrap } from "../fable_modules/fable-library-js.4.24.0/Option.js";
-import { DynamicObj_$reflection, DynamicObj } from "../fable_modules/DynamicObj.7.0.1/DynamicObj.fs.js";
-
-export class StepInput extends Record {
-    constructor(Id, Source, DefaultValue, ValueFrom) {
-        super();
-        this.Id = Id;
-        this.Source = Source;
-        this.DefaultValue = DefaultValue;
-        this.ValueFrom = ValueFrom;
-    }
-}
-
-export function StepInput_$reflection() {
-    return record_type("ARCtrl.CWL.StepInput", [], StepInput, () => [["Id", string_type], ["Source", option_type(string_type)], ["DefaultValue", option_type(string_type)], ["ValueFrom", option_type(string_type)]]);
-}
-
-export class StepOutput extends Record {
-    constructor(Id) {
-        super();
-        this.Id = Id;
-    }
-}
-
-export function StepOutput_$reflection() {
-    return record_type("ARCtrl.CWL.StepOutput", [], StepOutput, () => [["Id", array_type(string_type)]]);
-}
-
-export class WorkflowStep extends DynamicObj {
-    constructor(id, in_, out_, run, requirements, hints) {
-        super();
-        this._id = id;
-        this._in = in_;
-        this._out = out_;
-        this._run = run;
-        this._requirements = requirements;
-        this._hints = hints;
-    }
-    get Id() {
-        const this$ = this;
-        return this$._id;
-    }
-    set Id(id) {
-        const this$ = this;
-        this$._id = id;
-    }
-    get In() {
-        const this$ = this;
-        return this$._in;
-    }
-    set In(in_) {
-        const this$ = this;
-        this$._in = in_;
-    }
-    get Out() {
-        const this$ = this;
-        return this$._out;
-    }
-    set Out(out_) {
-        const this$ = this;
-        this$._out = out_;
-    }
-    get Run() {
-        const this$ = this;
-        return this$._run;
-    }
-    set Run(run) {
-        const this$ = this;
-        this$._run = run;
-    }
-    get Requirements() {
-        const this$ = this;
-        return unwrap(this$._requirements);
-    }
-    set Requirements(requirements) {
-        const this$ = this;
-        this$._requirements = requirements;
-    }
-    get Hints() {
-        const this$ = this;
-        return unwrap(this$._hints);
-    }
-    set Hints(hints) {
-        const this$ = this;
-        this$._hints = hints;
-    }
-}
-
-export function WorkflowStep_$reflection() {
-    return class_type("ARCtrl.CWL.WorkflowStep", undefined, WorkflowStep, DynamicObj_$reflection());
-}
-
-export function WorkflowStep_$ctor_4159DCB0(id, in_, out_, run, requirements, hints) {
-    return new WorkflowStep(id, in_, out_, run, requirements, hints);
-}
-

package/ColumnIndex.js

@@ -1,258 +0,0 @@
-import { tryParse } from "./fable_modules/fable-library-js.4.24.0/Int32.js";
-import { FSharpRef } from "./fable_modules/fable-library-js.4.24.0/Types.js";
-import { Comment$ } from "./Core/Comment.js";
-import { equals, int32ToString } from "./fable_modules/fable-library-js.4.24.0/Util.js";
-import { tryItem } from "./Core/CommentList.js";
-import { findIndex } from "./fable_modules/fable-library-js.4.24.0/Seq.js";
-import { value, bind } from "./fable_modules/fable-library-js.4.24.0/Option.js";
-import { Factor } from "./Core/Process/Factor.js";
-import { MaterialAttribute_fromString_5980DC03 } from "./Core/Process/MaterialAttribute.js";
-import { ProtocolParameter } from "./Core/Process/ProtocolParameter.js";
-import { Component_fromISAString_7C9A7CF8 } from "./Core/Process/Component.js";
-
-function tryInt(str) {
-    let matchValue;
-    let outArg = 0;
-    matchValue = [tryParse(str, 511, false, 32, new FSharpRef(() => outArg, (v) => {
-        outArg = (v | 0);
-    })), outArg];
-    if (matchValue[0]) {
-        return matchValue[1];
-    }
-    else {
-        return undefined;
-    }
-}
-
-export const orderName = "ColumnIndex";
-
-export function createOrderComment(index) {
-    return Comment$.create(orderName, int32ToString(index));
-}
-
-export function tryGetIndex(comments) {
-    const matchValue = tryItem(orderName, comments);
-    if (matchValue != null) {
-        const ci = matchValue;
-        const i = findIndex((c) => equals(c.Name, orderName), comments) | 0;
-        comments.splice(i, 1);
-        return tryInt(ci);
-    }
-    else {
-        return undefined;
-    }
-}
-
-export function setOntologyAnnotationIndexInplace(i, oa) {
-    void (oa.Comments.push(createOrderComment(i)));
-}
-
-export function setOntologyAnnotationIndex(i, oa) {
-    const oac = oa.Copy();
-    setOntologyAnnotationIndexInplace(i, oac);
-    return oac;
-}
-
-export function tryGetOntologyAnnotationIndex(oa) {
-    return tryGetIndex(oa.Comments);
-}
-
-export function tryGetParameterIndex(param) {
-    return bind((oa) => tryGetIndex(oa.Comments), param.ParameterName);
-}
-
-export function tryGetParameterColumnIndex(paramValue) {
-    return bind(tryGetParameterIndex, paramValue.Category);
-}
-
-export function tryGetFactorIndex(factor) {
-    return bind((oa) => tryGetIndex(oa.Comments), factor.FactorType);
-}
-
-export function tryGetFactorColumnIndex(factorValue) {
-    return bind(tryGetFactorIndex, factorValue.Category);
-}
-
-export function tryGetCharacteristicIndex(characteristic) {
-    return bind((oa) => tryGetIndex(oa.Comments), characteristic.CharacteristicType);
-}
-
-export function tryGetCharacteristicColumnIndex(characteristicValue) {
-    return bind(tryGetCharacteristicIndex, characteristicValue.Category);
-}
-
-export function tryGetComponentIndex(comp) {
-    return bind((oa) => tryGetIndex(oa.Comments), comp.ComponentType);
-}
-
-/**
- * Create a ISAJson Factor from ISATab string entries
- */
-export function ARCtrl_OntologyAnnotation__OntologyAnnotation_fromStringWithColumnIndex_Static(name, term, source, accession, valueIndex) {
-    return Factor.fromString(name, term, source, accession, [createOrderComment(valueIndex)]);
-}
-
-export function ARCtrl_OntologyAnnotation__OntologyAnnotation_getColumnIndex_Static_ZDED3A0F(f) {
-    return value(tryGetOntologyAnnotationIndex(f));
-}
-
-export function ARCtrl_OntologyAnnotation__OntologyAnnotation_GetColumnIndex(this$) {
-    return value(tryGetOntologyAnnotationIndex(this$));
-}
-
-export function ARCtrl_OntologyAnnotation__OntologyAnnotation_tryGetColumnIndex_Static_ZDED3A0F(f) {
-    return tryGetOntologyAnnotationIndex(f);
-}
-
-export function ARCtrl_OntologyAnnotation__OntologyAnnotation_TryGetColumnIndex(this$) {
-    return tryGetOntologyAnnotationIndex(this$);
-}
-
-export function ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(i, oa) {
-    return setOntologyAnnotationIndex(i, oa);
-}
-
-export function ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4(this$, i) {
-    setOntologyAnnotationIndexInplace(i, this$);
-}
-
-/**
- * Create a ISAJson Factor from ISATab string entries
- */
-export function ARCtrl_Process_Factor__Factor_fromStringWithColumnIndex_Static(name, term, source, accession, valueIndex) {
-    return Factor.fromString(name, term, source, accession, [createOrderComment(valueIndex)]);
-}
-
-export function ARCtrl_Process_Factor__Factor_getColumnIndex_Static_7206F0D9(f) {
-    return value(tryGetFactorIndex(f));
-}
-
-export function ARCtrl_Process_Factor__Factor_GetColumnIndex(this$) {
-    return value(tryGetFactorIndex(this$));
-}
-
-export function ARCtrl_Process_Factor__Factor_tryGetColumnIndex_Static_7206F0D9(f) {
-    return tryGetFactorIndex(f);
-}
-
-export function ARCtrl_Process_Factor__Factor_TryGetColumnIndex(this$) {
-    return tryGetFactorIndex(this$);
-}
-
-export function ARCtrl_Process_FactorValue__FactorValue_getColumnIndex_Static_7105C732(f) {
-    return value(tryGetFactorColumnIndex(f));
-}
-
-export function ARCtrl_Process_FactorValue__FactorValue_GetColumnIndex(this$) {
-    return value(tryGetFactorColumnIndex(this$));
-}
-
-export function ARCtrl_Process_FactorValue__FactorValue_tryGetColumnIndex_Static_7105C732(f) {
-    return tryGetFactorColumnIndex(f);
-}
-
-export function ARCtrl_Process_FactorValue__FactorValue_TryGetColumnIndex(this$) {
-    return tryGetFactorColumnIndex(this$);
-}
-
-/**
- * Create a ISAJson characteristic from ISATab string entries
- */
-export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_fromStringWithColumnIndex_Static(term, source, accession, valueIndex) {
-    return MaterialAttribute_fromString_5980DC03(term, source, accession, [createOrderComment(valueIndex)]);
-}
-
-export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_getColumnIndex_Static_Z1E3B85DD(m) {
-    return value(tryGetCharacteristicIndex(m));
-}
-
-export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_GetColumnIndex(this$) {
-    return value(tryGetCharacteristicIndex(this$));
-}
-
-export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_tryGetColumnIndex_Static_Z1E3B85DD(m) {
-    return tryGetCharacteristicIndex(m);
-}
-
-export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_TryGetColumnIndex(this$) {
-    return tryGetCharacteristicIndex(this$);
-}
-
-export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_getColumnIndex_Static_Z772273B8(m) {
-    return value(tryGetCharacteristicColumnIndex(m));
-}
-
-export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_GetColumnIndex(this$) {
-    return value(tryGetCharacteristicColumnIndex(this$));
-}
-
-export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_tryGetColumnIndex_Static_Z772273B8(m) {
-    return tryGetCharacteristicColumnIndex(m);
-}
-
-export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_TryGetColumnIndex(this$) {
-    return tryGetCharacteristicColumnIndex(this$);
-}
-
-/**
- * Create a ISAJson parameter from ISATab string entries
- */
-export function ARCtrl_Process_ProtocolParameter__ProtocolParameter_fromStringWithColumnIndex_Static(term, source, accession, valueIndex) {
-    return ProtocolParameter.fromString(term, source, accession, [createOrderComment(valueIndex)]);
-}
-
-export function ARCtrl_Process_ProtocolParameter__ProtocolParameter_getColumnIndex_Static_Z11F87B15(p) {
-    return value(tryGetParameterIndex(p));
-}
-
-export function ARCtrl_Process_ProtocolParameter__ProtocolParameter_GetColumnIndex(this$) {
-    return value(tryGetParameterIndex(this$));
-}
-
-export function ARCtrl_Process_ProtocolParameter__ProtocolParameter_tryGetColumnIndex_Static_Z11F87B15(p) {
-    return tryGetParameterIndex(p);
-}
-
-export function ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex(this$) {
-    return tryGetParameterIndex(this$);
-}
-
-export function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_getColumnIndex_Static_Z1576263(p) {
-    return value(tryGetParameterColumnIndex(p));
-}
-
-export function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_GetColumnIndex(this$) {
-    return value(tryGetParameterColumnIndex(this$));
-}
-
-export function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_tryGetColumnIndex_Static_Z1576263(p) {
-    return tryGetParameterColumnIndex(p);
-}
-
-export function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_TryGetColumnIndex(this$) {
-    return tryGetParameterColumnIndex(this$);
-}
-
-/**
- * Create a ISAJson Factor from ISATab string entries
- */
-export function ARCtrl_Process_Component__Component_fromStringWithColumnIndex_Static(name, term, source, accession, valueIndex) {
-    return Component_fromISAString_7C9A7CF8(name, term, source, accession, [createOrderComment(valueIndex)]);
-}
-
-export function ARCtrl_Process_Component__Component_getColumnIndex_Static_Z685B8F25(f) {
-    return value(tryGetComponentIndex(f));
-}
-
-export function ARCtrl_Process_Component__Component_GetColumnIndex(this$) {
-    return value(tryGetComponentIndex(this$));
-}
-
-export function ARCtrl_Process_Component__Component_tryGetColumnIndex_Static_Z685B8F25(f) {
-    return tryGetComponentIndex(f);
-}
-
-export function ARCtrl_Process_Component__Component_TryGetColumnIndex(this$) {
-    return tryGetComponentIndex(this$);
-}
-

package/Contract/ARC.js

@@ -1,43 +0,0 @@
-import { split as split_1 } from "../FileSystem/Path.js";
-import { $007CInvestigationPath$007C_$007C } from "./ArcInvestigation.js";
-import { Contract } from "./Contract.js";
-import { $007CAssayPath$007C_$007C } from "./ArcAssay.js";
-import { $007CStudyPath$007C_$007C } from "./ArcStudy.js";
-import { $007CDatamapPath$007C_$007C } from "./Datamap.js";
-
-/**
- * Tries to create READ contract with DTOType = ISA_Assay, ISA_Study or ISA_Investigation from given path relative to ARC root.
- */
-export function tryISAReadContractFromPath(path) {
-    const split = split_1(path);
-    const activePatternResult = $007CInvestigationPath$007C_$007C(split);
-    if (activePatternResult != null) {
-        const p = activePatternResult;
-        return Contract.createRead(p, "ISA_Investigation");
-    }
-    else {
-        const activePatternResult_1 = $007CAssayPath$007C_$007C(split);
-        if (activePatternResult_1 != null) {
-            const p_1 = activePatternResult_1;
-            return Contract.createRead(p_1, "ISA_Assay");
-        }
-        else {
-            const activePatternResult_2 = $007CStudyPath$007C_$007C(split);
-            if (activePatternResult_2 != null) {
-                const p_2 = activePatternResult_2;
-                return Contract.createRead(p_2, "ISA_Study");
-            }
-            else {
-                const activePatternResult_3 = $007CDatamapPath$007C_$007C(split);
-                if (activePatternResult_3 != null) {
-                    const p_3 = activePatternResult_3;
-                    return Contract.createRead(p_3, "ISA_Datamap");
-                }
-                else {
-                    return undefined;
-                }
-            }
-        }
-    }
-}
-