@nfdi4plants/arctrl 2.2.4 → 2.3.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (481) hide show
  1. package/ARC.js +160 -23
  2. package/CWL/CWLTypes.js +3 -3
  3. package/CWL/Decode.js +7 -7
  4. package/CWL/Inputs.js +4 -4
  5. package/CWL/Outputs.js +4 -4
  6. package/CWL/Requirements.js +3 -3
  7. package/CWL/ToolDescription.js +2 -2
  8. package/CWL/WorkflowDescription.js +2 -2
  9. package/CWL/WorkflowSteps.js +3 -3
  10. package/Contract/ArcAssay.js +4 -4
  11. package/Contract/ArcInvestigation.js +2 -2
  12. package/Contract/ArcStudy.js +4 -4
  13. package/Contract/Contract.js +3 -3
  14. package/Contract/Datamap.js +2 -2
  15. package/Contract/Git.js +4 -4
  16. package/Contract/ValidationPackagesConfig.js +2 -2
  17. package/ContractIO/ContractIO.js +204 -0
  18. package/ContractIO/FileSystemHelper.js +130 -0
  19. package/Core/ArcTypes.js +9 -9
  20. package/Core/Comment.js +8 -8
  21. package/Core/CommentList.js +4 -4
  22. package/Core/Conversion.js +10 -10
  23. package/Core/Data.js +5 -5
  24. package/Core/DataContext.js +2 -2
  25. package/Core/DataFile.js +2 -2
  26. package/Core/DataMap.js +3 -3
  27. package/Core/Helper/Collections.js +8 -8
  28. package/Core/Helper/HashCodes.js +5 -5
  29. package/Core/Helper/Identifier.js +1 -1
  30. package/Core/Helper/Regex.js +3 -3
  31. package/Core/Helper/SemVer.js +6 -6
  32. package/Core/OntologyAnnotation.js +7 -7
  33. package/Core/OntologySourceReference.js +3 -3
  34. package/Core/Person.js +9 -9
  35. package/Core/Process/ColumnIndex.js +5 -5
  36. package/Core/Process/Component.js +4 -4
  37. package/Core/Process/Factor.js +5 -5
  38. package/Core/Process/FactorValue.js +5 -5
  39. package/Core/Process/Material.js +5 -5
  40. package/Core/Process/MaterialAttribute.js +3 -3
  41. package/Core/Process/MaterialAttributeValue.js +5 -5
  42. package/Core/Process/MaterialType.js +2 -2
  43. package/Core/Process/Process.js +8 -8
  44. package/Core/Process/ProcessInput.js +5 -5
  45. package/Core/Process/ProcessOutput.js +5 -5
  46. package/Core/Process/ProcessParameterValue.js +5 -5
  47. package/Core/Process/ProcessSequence.js +6 -6
  48. package/Core/Process/Protocol.js +5 -5
  49. package/Core/Process/ProtocolParameter.js +3 -3
  50. package/Core/Process/Sample.js +5 -5
  51. package/Core/Process/Source.js +5 -5
  52. package/Core/Publication.js +8 -8
  53. package/Core/Table/ArcTable.js +13 -13
  54. package/Core/Table/ArcTableAux.js +15 -15
  55. package/Core/Table/ArcTables.js +9 -9
  56. package/Core/Table/CompositeCell.js +3 -3
  57. package/Core/Table/CompositeColumn.js +4 -4
  58. package/Core/Table/CompositeHeader.js +4 -4
  59. package/Core/Template.js +6 -6
  60. package/Core/Templates.js +6 -6
  61. package/Core/Value.js +7 -7
  62. package/CrossAsync.js +34 -0
  63. package/FileSystem/Commit.js +2 -2
  64. package/FileSystem/FileSystem.js +4 -4
  65. package/FileSystem/FileSystemTree.js +8 -8
  66. package/FileSystem/Path.js +2 -2
  67. package/FileSystem.js +102 -0
  68. package/Json/ARC.js +3 -3
  69. package/Json/Assay.js +4 -4
  70. package/Json/Comment.js +5 -5
  71. package/Json/ConverterOptions.js +2 -2
  72. package/Json/Data.js +4 -4
  73. package/Json/DataFile.js +1 -1
  74. package/Json/DataMap/DataContext.js +3 -3
  75. package/Json/DataMap/DataMap.js +1 -1
  76. package/Json/Decode.js +9 -9
  77. package/Json/Encode.js +5 -5
  78. package/Json/IDTable.js +3 -3
  79. package/Json/Investigation.js +5 -5
  80. package/Json/LDObject.js +6 -6
  81. package/Json/OntologyAnnotation.js +5 -5
  82. package/Json/OntologySourceReference.js +4 -4
  83. package/Json/Person.js +5 -5
  84. package/Json/Process/AssayMaterials.js +3 -3
  85. package/Json/Process/Component.js +3 -3
  86. package/Json/Process/Factor.js +3 -3
  87. package/Json/Process/FactorValue.js +3 -3
  88. package/Json/Process/Material.js +4 -4
  89. package/Json/Process/MaterialAttribute.js +3 -3
  90. package/Json/Process/MaterialAttributeValue.js +3 -3
  91. package/Json/Process/MaterialType.js +1 -1
  92. package/Json/Process/Process.js +4 -4
  93. package/Json/Process/ProcessInput.js +1 -1
  94. package/Json/Process/ProcessOutput.js +1 -1
  95. package/Json/Process/ProcessParameterValue.js +3 -3
  96. package/Json/Process/Protocol.js +4 -4
  97. package/Json/Process/ProtocolParameter.js +3 -3
  98. package/Json/Process/Sample.js +5 -5
  99. package/Json/Process/Source.js +4 -4
  100. package/Json/Process/StudyMaterials.js +3 -3
  101. package/Json/Process/Value.js +1 -1
  102. package/Json/PropertyValue.js +3 -3
  103. package/Json/Publication.js +4 -4
  104. package/Json/StringTable.js +4 -4
  105. package/Json/Study.js +5 -5
  106. package/Json/Table/ArcTable.js +10 -10
  107. package/Json/Table/CellTable.js +4 -4
  108. package/Json/Table/CompositeCell.js +3 -3
  109. package/Json/Table/CompositeHeader.js +2 -2
  110. package/Json/Table/IOType.js +1 -1
  111. package/Json/Table/OATable.js +4 -4
  112. package/Json/Table/Templates.js +5 -5
  113. package/Json/context/rocrate/isa_assay_context.js +3 -3
  114. package/Json/context/rocrate/isa_comment_context.js +3 -3
  115. package/Json/context/rocrate/isa_component_context.js +3 -3
  116. package/Json/context/rocrate/isa_data_context.js +3 -3
  117. package/Json/context/rocrate/isa_factor_context.js +3 -3
  118. package/Json/context/rocrate/isa_factor_value_context.js +3 -3
  119. package/Json/context/rocrate/isa_investigation_context.js +3 -3
  120. package/Json/context/rocrate/isa_material_attribute_context.js +3 -3
  121. package/Json/context/rocrate/isa_material_attribute_value_context.js +3 -3
  122. package/Json/context/rocrate/isa_material_context.js +3 -3
  123. package/Json/context/rocrate/isa_ontology_annotation_context.js +3 -3
  124. package/Json/context/rocrate/isa_ontology_source_reference_context.js +3 -3
  125. package/Json/context/rocrate/isa_organization_context.js +3 -3
  126. package/Json/context/rocrate/isa_person_context.js +3 -3
  127. package/Json/context/rocrate/isa_process_context.js +3 -3
  128. package/Json/context/rocrate/isa_process_parameter_value_context.js +3 -3
  129. package/Json/context/rocrate/isa_protocol_context.js +3 -3
  130. package/Json/context/rocrate/isa_protocol_parameter_context.js +3 -3
  131. package/Json/context/rocrate/isa_publication_context.js +3 -3
  132. package/Json/context/rocrate/isa_sample_context.js +3 -3
  133. package/Json/context/rocrate/isa_source_context.js +3 -3
  134. package/Json/context/rocrate/isa_study_context.js +3 -3
  135. package/Json/context/rocrate/property_value_context.js +1 -1
  136. package/Json/context/rocrate/rocrate_context.js +3 -3
  137. package/Json.js +2 -2
  138. package/JsonIO/ARC.js +3 -3
  139. package/JsonIO/Assay.js +2 -2
  140. package/JsonIO/Comment.js +2 -2
  141. package/JsonIO/Data.js +2 -2
  142. package/JsonIO/DataFile.js +2 -2
  143. package/JsonIO/DataMap/DataMap.js +1 -1
  144. package/JsonIO/Investigation.js +2 -2
  145. package/JsonIO/LDObject.js +2 -2
  146. package/JsonIO/OntologyAnnotation.js +2 -2
  147. package/JsonIO/OntologySourceReference.js +2 -2
  148. package/JsonIO/Person.js +2 -2
  149. package/JsonIO/Process/Component.js +2 -2
  150. package/JsonIO/Process/Factor.js +2 -2
  151. package/JsonIO/Process/FactorValue.js +2 -2
  152. package/JsonIO/Process/Material.js +2 -2
  153. package/JsonIO/Process/MaterialAttribute.js +2 -2
  154. package/JsonIO/Process/MaterialAttributeValue.js +2 -2
  155. package/JsonIO/Process/MaterialType.js +2 -2
  156. package/JsonIO/Process/Process.js +2 -2
  157. package/JsonIO/Process/ProcessInput.js +2 -2
  158. package/JsonIO/Process/ProcessOutput.js +2 -2
  159. package/JsonIO/Process/ProcessParameterValue.js +2 -2
  160. package/JsonIO/Process/ProcessSequence.js +4 -4
  161. package/JsonIO/Process/Protocol.js +2 -2
  162. package/JsonIO/Process/ProtocolParameter.js +2 -2
  163. package/JsonIO/Process/Sample.js +2 -2
  164. package/JsonIO/Process/Source.js +2 -2
  165. package/JsonIO/Process/StudyMaterials.js +3 -3
  166. package/JsonIO/Process/Value.js +1 -1
  167. package/JsonIO/Publication.js +2 -2
  168. package/JsonIO/Study.js +2 -2
  169. package/JsonIO/Table/ArcTable.js +5 -5
  170. package/JsonIO/Table/CompositeCell.js +2 -2
  171. package/JsonIO/Table/CompositeHeader.js +2 -2
  172. package/JsonIO/Table/Compression.js +3 -3
  173. package/JsonIO/Table/IOType.js +2 -2
  174. package/JsonIO/Table/Templates.js +3 -3
  175. package/ROCrate/ArcROCrateMetadata.js +3 -3
  176. package/ROCrate/ISAProfile/Assay.js +4 -4
  177. package/ROCrate/ISAProfile/Data.js +4 -4
  178. package/ROCrate/ISAProfile/Dataset.js +2 -2
  179. package/ROCrate/ISAProfile/Investigation.js +4 -4
  180. package/ROCrate/ISAProfile/LabProcess.js +4 -4
  181. package/ROCrate/ISAProfile/LabProtocol.js +4 -4
  182. package/ROCrate/ISAProfile/Person.js +4 -4
  183. package/ROCrate/ISAProfile/PropertyValue.js +4 -4
  184. package/ROCrate/ISAProfile/Sample.js +4 -4
  185. package/ROCrate/ISAProfile/ScholarlyArticle.js +4 -4
  186. package/ROCrate/ISAProfile/Study.js +4 -4
  187. package/ROCrate/LDObject.js +2 -2
  188. package/Spreadsheet/AnnotationTable/ArcTable.js +13 -13
  189. package/Spreadsheet/AnnotationTable/CompositeCell.js +2 -2
  190. package/Spreadsheet/AnnotationTable/CompositeColumn.js +7 -7
  191. package/Spreadsheet/AnnotationTable/CompositeHeader.js +6 -6
  192. package/Spreadsheet/ArcAssay.js +7 -7
  193. package/Spreadsheet/ArcInvestigation.js +12 -12
  194. package/Spreadsheet/ArcStudy.js +7 -7
  195. package/Spreadsheet/CollectionAux.js +7 -7
  196. package/Spreadsheet/DataMap.js +3 -3
  197. package/Spreadsheet/DataMapTable/DataMapColumn.js +6 -6
  198. package/Spreadsheet/DataMapTable/DataMapHeader.js +5 -5
  199. package/Spreadsheet/DataMapTable/DataMapTable.js +10 -10
  200. package/Spreadsheet/Metadata/Assays.js +5 -5
  201. package/Spreadsheet/Metadata/Comment.js +2 -2
  202. package/Spreadsheet/Metadata/Contacts.js +5 -5
  203. package/Spreadsheet/Metadata/Conversions.js +5 -5
  204. package/Spreadsheet/Metadata/DesignDescriptors.js +1 -1
  205. package/Spreadsheet/Metadata/Factors.js +5 -5
  206. package/Spreadsheet/Metadata/OntologyAnnotation.js +5 -5
  207. package/Spreadsheet/Metadata/OntologySourceReference.js +5 -5
  208. package/Spreadsheet/Metadata/Protocols.js +5 -5
  209. package/Spreadsheet/Metadata/Publication.js +5 -5
  210. package/Spreadsheet/Metadata/SparseTable.js +17 -17
  211. package/Spreadsheet/Metadata/Study.js +8 -8
  212. package/Spreadsheet/Template.js +13 -13
  213. package/Template.Web.js +4 -4
  214. package/ValidationPackages/ValidationPackage.js +5 -5
  215. package/ValidationPackages/ValidationPackagesConfig.js +8 -8
  216. package/WebRequest/WebRequest.Node.js +2 -2
  217. package/WebRequest/WebRequest.js +2 -2
  218. package/Xlsx.js +16 -3
  219. package/Yaml/Encode.js +1 -1
  220. package/Yaml/ValidationPackage.js +4 -4
  221. package/Yaml/ValidationPackagesConfig.js +4 -4
  222. package/fable_modules/DynamicObj.4.0.3/DynObj.fs.js +6 -6
  223. package/fable_modules/DynamicObj.4.0.3/DynamicObj.fs.js +4 -4
  224. package/fable_modules/DynamicObj.4.0.3/FableJS.fs.js +4 -4
  225. package/fable_modules/DynamicObj.4.0.3/HashCodes.fs.js +5 -5
  226. package/fable_modules/DynamicObj.4.0.3/PropertyHelper.fs.js +2 -2
  227. package/fable_modules/DynamicObj.4.0.3/ReflectionUtils.fs.js +1 -1
  228. package/fable_modules/Fable.Exceljs.1.6.0/Cell.fs +32 -0
  229. package/fable_modules/Fable.Exceljs.1.6.0/Column.fs +24 -0
  230. package/fable_modules/Fable.Exceljs.1.6.0/Csv.fs +12 -0
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  234. package/fable_modules/Fable.Exceljs.1.6.0/Extensions.fs.js +20 -0
  235. package/fable_modules/Fable.Exceljs.1.6.0/Fable.Exceljs.fableproj +53 -0
  236. package/fable_modules/Fable.Exceljs.1.6.0/Row.fs +34 -0
  237. package/fable_modules/Fable.Exceljs.1.6.0/Table.fs +85 -0
  238. package/fable_modules/Fable.Exceljs.1.6.0/Table.fs.js +22 -0
  239. package/fable_modules/Fable.Exceljs.1.6.0/Unions.fs +87 -0
  240. package/fable_modules/Fable.Exceljs.1.6.0/Unions.fs.js +73 -0
  241. package/fable_modules/Fable.Exceljs.1.6.0/Workbook.fs +37 -0
  242. package/fable_modules/Fable.Exceljs.1.6.0/Worksheet.fs +120 -0
  243. package/fable_modules/Fable.Exceljs.1.6.0/Xlsx.fs +18 -0
  244. package/fable_modules/Fable.Exceljs.1.6.0/obj/Debug/net6.0/.NETCoreApp,Version=v6.0.AssemblyAttributes.fs +3 -0
  245. package/fable_modules/Fable.Exceljs.1.6.0/obj/Debug/net6.0/Fable.Exceljs.AssemblyInfo.fs +19 -0
  246. package/fable_modules/Fable.Exceljs.1.6.0/obj/Debug/netstandard2.0/Fable.Exceljs.AssemblyInfo.fs +19 -0
  247. package/fable_modules/Fable.Exceljs.1.6.0/obj/Release/net6.0/.NETCoreApp,Version=v6.0.AssemblyAttributes.fs +3 -0
  248. package/fable_modules/Fable.Exceljs.1.6.0/obj/Release/net6.0/Fable.Exceljs.AssemblyInfo.fs +19 -0
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  250. package/fable_modules/Fable.Fetch.2.6.0/Fetch.fs.js +8 -8
  251. package/fable_modules/Fable.Promise.3.2.0/AsyncIterable.fs +57 -0
  252. package/fable_modules/Fable.Promise.3.2.0/AsyncIterable.fs.js +104 -0
  253. package/fable_modules/{Fable.Promise.2.2.2 → Fable.Promise.3.2.0}/Fable.Promise.fableproj +4 -3
  254. package/fable_modules/Fable.Promise.3.2.0/Promise.fs +766 -0
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  258. package/fable_modules/Fable.SimpleHttp.3.5.0/Http.fs.js +8 -8
  259. package/fable_modules/Fable.SimpleHttp.3.5.0/Types.fs.js +2 -2
  260. package/fable_modules/{FsSpreadsheet.6.3.0-alpha.4 → FsSpreadsheet.6.3.1}/Cells/FsCell.fs.js +14 -14
  261. package/fable_modules/{FsSpreadsheet.6.3.0-alpha.4 → FsSpreadsheet.6.3.1}/Cells/FsCellsCollection.fs.js +6 -6
  262. package/fable_modules/{FsSpreadsheet.6.3.0-alpha.4 → FsSpreadsheet.6.3.1}/DSL/CellBuilder.fs.js +4 -4
  263. package/fable_modules/{FsSpreadsheet.6.3.0-alpha.4 → FsSpreadsheet.6.3.1}/DSL/ColumnBuilder.fs.js +3 -3
  264. package/fable_modules/{FsSpreadsheet.6.3.0-alpha.4 → FsSpreadsheet.6.3.1}/DSL/DSL.fs.js +2 -2
  265. package/fable_modules/{FsSpreadsheet.6.3.0-alpha.4 → FsSpreadsheet.6.3.1}/DSL/Expression.fs.js +1 -1
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  270. package/fable_modules/{FsSpreadsheet.6.3.0-alpha.4 → FsSpreadsheet.6.3.1}/DSL/Types.fs.js +4 -4
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