@nfdi4plants/arctrl 2.0.0 → 2.1.0-alpha.1

package/ARC.js

@@ -1,20 +1,20 @@
-import { append as append_1, contains as contains_1, concat, fold, map, exactlyOne, tryPick, choose } from "./fable_modules/fable-library-js.4.16.0/Array.js";
+import { append as append_1, contains as contains_1, concat, fold, map, exactlyOne, tryPick, choose } from "./fable_modules/fable-library-js.4.22.0/Array.js";
 import { ARCtrl_ArcAssay__ArcAssay_ToUpdateContract, ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49, ARCtrl_ArcAssay__ArcAssay_ToDeleteContract, ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F } from "./Contract/ArcAssay.js";
 import { ARCtrl_DataMap__DataMap_ToUpdateContractForAssay_Z721C83C5, ARCtrl_DataMap__DataMap_ToCreateContractForAssay_Z721C83C5, ARCtrl_DataMap__DataMap_ToUpdateContractForStudy_Z721C83C5, ARCtrl_DataMap__DataMap_ToCreateContractForStudy_Z721C83C5, ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static, ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static } from "./Contract/Datamap.js";
 import { ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49, ARCtrl_ArcStudy__ArcStudy_ToUpdateContract, ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F } from "./Contract/ArcStudy.js";
 import { ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract, ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F } from "./Contract/ArcInvestigation.js";
-import { collect, empty, iterate, find, tryFind, map as map_1, singleton, append, delay, toList, contains, toArray } from "./fable_modules/fable-library-js.4.16.0/Seq.js";
+import { collect, empty, iterate, find, tryFind, map as map_1, singleton, append, delay, toList, contains, toArray } from "./fable_modules/fable-library-js.4.22.0/Seq.js";
 import { FileSystemTree } from "./FileSystem/FileSystemTree.js";
 import { FileSystem } from "./FileSystem/FileSystem.js";
-import { bind, map as map_2, defaultArg, value as value_2, unwrap } from "./fable_modules/fable-library-js.4.16.0/Option.js";
-import { comparePrimitives, safeHash, stringHash } from "./fable_modules/fable-library-js.4.16.0/Util.js";
+import { bind, map as map_2, defaultArg, value as value_2, unwrap } from "./fable_modules/fable-library-js.4.22.0/Option.js";
+import { comparePrimitives, safeHash, stringHash } from "./fable_modules/fable-library-js.4.22.0/Util.js";
 import { getStudyFolderPath, getAssayFolderPath } from "./FileSystem/Path.js";
-import { printf, toText, replace } from "./fable_modules/fable-library-js.4.16.0/String.js";
+import { printf, toText, replace } from "./fable_modules/fable-library-js.4.22.0/String.js";
 import { Contract } from "./Contract/Contract.js";
-import { ofArray } from "./fable_modules/fable-library-js.4.16.0/List.js";
+import { ofArray } from "./fable_modules/fable-library-js.4.22.0/List.js";
 import { tryISAReadContractFromPath } from "./Contract/ARC.js";
 import { ArcTables } from "./Core/Table/ArcTables.js";
-import { addToDict } from "./fable_modules/fable-library-js.4.16.0/MapUtil.js";
+import { addToDict } from "./fable_modules/fable-library-js.4.22.0/MapUtil.js";
 import { ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF } from "./Spreadsheet/ArcInvestigation.js";
 import { ArcInvestigation } from "./Core/ArcTypes.js";
 import { Assay_datamapFileNameFromIdentifier, Assay_fileNameFromIdentifier, Study_datamapFileNameFromIdentifier, Study_fileNameFromIdentifier } from "./Core/Helper/Identifier.js";
@@ -22,16 +22,16 @@ import { ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522 } from "./Sprea
 import { DataMap__get_StaticHash, DataMap__set_StaticHash_Z524259A4 } from "./Core/DataMap.js";
 import { toFsWorkbook } from "./Spreadsheet/DataMap.js";
 import { ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F } from "./Spreadsheet/ArcAssay.js";
-import { Dictionary_tryGet } from "./fable_modules/FsSpreadsheet.6.2.0/Cells/FsCellsCollection.fs.js";
+import { Dictionary_tryGet } from "./fable_modules/FsSpreadsheet.6.3.0-alpha.4/Cells/FsCellsCollection.fs.js";
 import { Clone_createCloneContract_5000466F, Init_createAddRemoteContract_Z721C83C5, gitignoreContract, gitattributesContract, Init_createInitContract_6DFDD678 } from "./Contract/Git.js";
-import { FSharpSet__Contains, ofSeq, unionMany } from "./fable_modules/fable-library-js.4.16.0/Set.js";
-import { ofSeq as ofSeq_1 } from "./fable_modules/fable-library-js.4.16.0/Map.js";
-import { fromString } from "./fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
-import { encoder, decoder as decoder_1 } from "./Json/ARC.js";
-import { toString } from "./fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
+import { FSharpSet__Contains, ofSeq, unionMany } from "./fable_modules/fable-library-js.4.22.0/Set.js";
+import { ofSeq as ofSeq_1 } from "./fable_modules/fable-library-js.4.22.0/Map.js";
+import { fromString } from "./fable_modules/Thoth.Json.JavaScript.0.3.0/Decode.fs.js";
+import { encoder, decoder as decoder_1 } from "./JsonIO/ARC.js";
+import { toString } from "./fable_modules/Thoth.Json.JavaScript.0.3.0/Encode.fs.js";
 import { defaultSpaces } from "./Json/Encode.js";
 import { ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_tryFromReadContract_Static_7570923F, ValidationPackagesConfigHelper_ReadContract, ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_toDeleteContract_Static_724DAE55, ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_toCreateContract_Static_724DAE55, ValidationPackagesConfigHelper_ConfigFilePath } from "./Contract/ValidationPackagesConfig.js";
-import { class_type } from "./fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { class_type } from "./fable_modules/fable-library-js.4.22.0/Reflection.js";
 
 export function ARCAux_getArcAssaysFromContracts(contracts) {
     return choose(ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F, contracts);
@@ -141,7 +141,7 @@ export class ARC {
         isa.RemoveAssay(assayIdentifier);
         const paths = this$.FileSystem.Tree.ToFilePaths();
         const assayFolderPath = getAssayFolderPath(assayIdentifier);
-        const filteredPaths = paths.filter((p) => !(p.indexOf(assayFolderPath) === 0));
+        const filteredPaths = paths.filter((p) => !p.startsWith(assayFolderPath));
         this$.SetFilePaths(filteredPaths);
         const collection = toList(delay(() => append(singleton(ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(assay)), delay(() => append(singleton(ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(isa)), delay(() => map_1(ARCtrl_ArcStudy__ArcStudy_ToUpdateContract, studies)))))));
         return Array.from(collection);
@@ -186,7 +186,7 @@ export class ARC {
         isa.RemoveStudy(studyIdentifier);
         const paths = this$.FileSystem.Tree.ToFilePaths();
         const studyFolderPath = getStudyFolderPath(studyIdentifier);
-        const filteredPaths = paths.filter((p) => !(p.indexOf(studyFolderPath) === 0));
+        const filteredPaths = paths.filter((p) => !p.startsWith(studyFolderPath));
         this$.SetFilePaths(filteredPaths);
         const collection = ofArray([Contract.createDelete(studyFolderPath), ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(isa)]);
         return Array.from(collection);
@@ -219,7 +219,7 @@ export class ARC {
         return Array.from(collection);
     }
     static fromFilePaths(filePaths) {
-        return new ARC(void 0, void 0, FileSystem.fromFilePaths(filePaths));
+        return new ARC(undefined, undefined, FileSystem.fromFilePaths(filePaths));
     }
     SetFilePaths(filePaths) {
         const this$ = this;
@@ -476,19 +476,19 @@ export class ARC {
         const fsCopy = this$._fs.Copy();
         return defaultArg(bind((tree_1) => {
             if (ignoreHidden) {
-                return FileSystemTree.filterFolders((n_1) => !(n_1.indexOf(".") === 0))(tree_1);
+                return FileSystemTree.filterFolders((n_1) => !n_1.startsWith("."))(tree_1);
             }
             else {
                 return tree_1;
             }
         }, (tree = ((paths = ((array_3 = FileSystemTree.toFilePaths()(fsCopy.Tree), array_3.filter((p) => {
-            if ((p.indexOf("workflows") === 0) ? true : (p.indexOf("runs") === 0)) {
+            if (p.startsWith("workflows") ? true : p.startsWith("runs")) {
                 return true;
             }
             else {
                 return FSharpSet__Contains(includeFiles, p);
             }
-        }))), FileSystemTree.fromFilePaths(paths))), ignoreHidden ? FileSystemTree.filterFiles((n) => !(n.indexOf(".") === 0))(tree) : tree)), FileSystemTree.fromFilePaths([]));
+        }))), FileSystemTree.fromFilePaths(paths))), ignoreHidden ? FileSystemTree.filterFiles((n) => !n.startsWith("."))(tree) : tree)), FileSystemTree.fromFilePaths([]));
     }
     GetAdditionalPayload(IgnoreHidden) {
         let tree, paths, array;
@@ -499,12 +499,12 @@ export class ARC {
         });
         return defaultArg(bind((tree_1) => {
             if (ignoreHidden) {
-                return FileSystemTree.filterFolders((n_1) => !(n_1.indexOf(".") === 0))(tree_1);
+                return FileSystemTree.filterFolders((n_1) => !n_1.startsWith("."))(tree_1);
             }
             else {
                 return tree_1;
             }
-        }, (tree = ((paths = ((array = FileSystemTree.toFilePaths()(this$._fs.Copy().Tree), array.filter((p) => !FSharpSet__Contains(registeredPayload, p)))), FileSystemTree.fromFilePaths(paths))), ignoreHidden ? FileSystemTree.filterFiles((n) => !(n.indexOf(".") === 0))(tree) : tree)), FileSystemTree.fromFilePaths([]));
+        }, (tree = ((paths = ((array = FileSystemTree.toFilePaths()(this$._fs.Copy().Tree), array.filter((p) => !FSharpSet__Contains(registeredPayload, p)))), FileSystemTree.fromFilePaths(paths))), ignoreHidden ? FileSystemTree.filterFiles((n) => !n.startsWith("."))(tree) : tree)), FileSystemTree.fromFilePaths([]));
     }
     static get DefaultContracts() {
         return ofSeq_1([[".gitignore", gitignoreContract], [".gitattributes", gitattributesContract]], {
@@ -513,9 +513,9 @@ export class ARC {
     }
     static fromROCrateJsonString(s) {
         let matchValue;
-        return new ARC((matchValue = fromString(decoder_1, s), (matchValue.tag === 1) ? (() => {
+        return new ARC(unwrap((matchValue = fromString(decoder_1, s), (matchValue.tag === 1) ? (() => {
             throw new Error(toText(printf("Error decoding string: %O"))(matchValue.fields[0]));
-        })() : matchValue.fields[0]));
+        })() : matchValue.fields[0])));
     }
     ToROCrateJsonString(spaces) {
         const this$ = this;
@@ -558,7 +558,7 @@ export class ARC {
 }
 
 export function ARC_$reflection() {
-    return class_type("ARCtrl.ARC", void 0, ARC);
+    return class_type("ARCtrl.ARC", undefined, ARC);
 }
 
 export function ARC_$ctor_79978BA1(isa, cwl, fs) {

package/Contract/ARC.js

@@ -34,7 +34,7 @@ export function tryISAReadContractFromPath(path) {
                     return Contract.createRead(p_3, "ISA_Datamap");
                 }
                 else {
-                    return void 0;
+                    return undefined;
                 }
             }
         }

package/Contract/ArcAssay.js

@@ -1,11 +1,11 @@
-import { equalsWith, item } from "../fable_modules/fable-library-js.4.16.0/Array.js";
+import { equalsWith, item } from "../fable_modules/fable-library-js.4.22.0/Array.js";
 import { getAssayFolderPath, combineMany } from "../FileSystem/Path.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.16.0/Util.js";
-import { unwrap, defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { unwrap, defaultArg } from "../fable_modules/fable-library-js.4.22.0/Option.js";
 import { Assay_fileNameFromIdentifier } from "../Core/Helper/Identifier.js";
 import { Contract } from "./Contract.js";
 import { ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F } from "../Spreadsheet/ArcAssay.js";
-import { empty, singleton, collect, append, delay, toArray } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { empty, singleton, collect, append, delay, toArray } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
 import { FileSystemTree } from "../FileSystem/FileSystemTree.js";
 
 export function $007CAssayPath$007C_$007C(input) {
@@ -32,7 +32,7 @@ export function $007CAssayPath$007C_$007C(input) {
             return combineMany(input);
         }
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -96,7 +96,7 @@ export function ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F(c)
         case 0:
             return ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D(fsworkbook);
         default:
-            return void 0;
+            return undefined;
     }
 }
 

package/Contract/ArcInvestigation.js

@@ -1,6 +1,6 @@
 import { combineMany } from "../FileSystem/Path.js";
-import { item, equalsWith } from "../fable_modules/fable-library-js.4.16.0/Array.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { item, equalsWith } from "../fable_modules/fable-library-js.4.22.0/Array.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 import { Contract } from "./Contract.js";
 import { ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF } from "../Spreadsheet/ArcInvestigation.js";
 
@@ -21,7 +21,7 @@ export function $007CInvestigationPath$007C_$007C(input) {
         case 0:
             return combineMany(input);
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -69,7 +69,7 @@ export function ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_St
         case 0:
             return ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D(fsworkbook);
         default:
-            return void 0;
+            return undefined;
     }
 }
 

package/Contract/ArcStudy.js

@@ -1,11 +1,11 @@
-import { equalsWith, item } from "../fable_modules/fable-library-js.4.16.0/Array.js";
+import { equalsWith, item } from "../fable_modules/fable-library-js.4.22.0/Array.js";
 import { getStudyFolderPath, combineMany } from "../FileSystem/Path.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.16.0/Util.js";
-import { unwrap, defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
+import { unwrap, defaultArg } from "../fable_modules/fable-library-js.4.22.0/Option.js";
 import { Study_fileNameFromIdentifier } from "../Core/Helper/Identifier.js";
 import { Contract } from "./Contract.js";
 import { ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522 } from "../Spreadsheet/ArcStudy.js";
-import { empty, singleton, collect, append, delay, toArray } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { empty, singleton, collect, append, delay, toArray } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
 import { FileSystemTree } from "../FileSystem/FileSystemTree.js";
 
 export function $007CStudyPath$007C_$007C(input) {
@@ -32,7 +32,7 @@ export function $007CStudyPath$007C_$007C(input) {
             return combineMany(input);
         }
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -96,7 +96,7 @@ export function ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F(c)
         case 0:
             return ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D(fsworkbook);
         default:
-            return void 0;
+            return undefined;
     }
 }
 

package/Contract/Contract.js

@@ -1,6 +1,6 @@
-import { Record } from "../fable_modules/fable-library-js.4.16.0/Types.js";
-import { class_type, option_type, record_type, array_type, string_type } from "../fable_modules/fable-library-js.4.16.0/Reflection.js";
-import { defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
+import { Record } from "../fable_modules/fable-library-js.4.22.0/Types.js";
+import { class_type, option_type, record_type, array_type, string_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { defaultArg } from "../fable_modules/fable-library-js.4.22.0/Option.js";
 
 export class CLITool extends Record {
     constructor(Name, Arguments) {
@@ -79,16 +79,16 @@ export class Contract extends Record {
         return new Contract("UPDATE", path, dtoType, dto);
     }
     static createDelete(path) {
-        return new Contract("DELETE", path, void 0, void 0);
+        return new Contract("DELETE", path, undefined, undefined);
     }
     static createRead(path, dtoType) {
-        return new Contract("READ", path, dtoType, void 0);
+        return new Contract("READ", path, dtoType, undefined);
     }
     static createExecute(dto, path) {
         return new Contract("EXECUTE", defaultArg(path, ""), "Cli", dto);
     }
     static createRename(oldPath, newPath) {
-        return new Contract("RENAME", oldPath, void 0, newPath);
+        return new Contract("RENAME", oldPath, undefined, newPath);
     }
 }
 

package/Contract/Datamap.js

@@ -1,6 +1,6 @@
-import { equalsWith, item } from "../fable_modules/fable-library-js.4.16.0/Array.js";
+import { equalsWith, item } from "../fable_modules/fable-library-js.4.22.0/Array.js";
 import { combineMany } from "../FileSystem/Path.js";
-import { safeHash, defaultOf } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { safeHash, defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 import { Study_datamapFileNameFromIdentifier, Assay_datamapFileNameFromIdentifier } from "../Core/Helper/Identifier.js";
 import { Contract } from "./Contract.js";
 import { fromFsWorkbook, toFsWorkbook } from "../Spreadsheet/DataMap.js";
@@ -42,7 +42,7 @@ export function $007CDatamapPath$007C_$007C(input) {
             return combineMany(input);
         }
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -108,7 +108,7 @@ export function ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static(assay
             return dm;
         }
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -174,7 +174,7 @@ export function ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static(study
             return dm;
         }
         default:
-            return void 0;
+            return undefined;
     }
 }
 

package/Contract/Git.js

@@ -1,10 +1,10 @@
 import { Contract, CLITool } from "./Contract.js";
 import { dgi } from "../FileSystem/DefaultGitignore.js";
 import { dga } from "../FileSystem/DefaultGitattributes.js";
-import { class_type } from "../fable_modules/fable-library-js.4.16.0/Reflection.js";
-import { value, defaultArg } from "../fable_modules/fable-library-js.4.16.0/Option.js";
-import { replace } from "../fable_modules/fable-library-js.4.16.0/String.js";
-import { empty, singleton, append, delay, toArray } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { value, defaultArg } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { replace } from "../fable_modules/fable-library-js.4.22.0/String.js";
+import { empty, singleton, append, delay, toArray } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
 
 export function gitWithArgs(arguments$) {
     return CLITool.create("git", arguments$);
@@ -28,7 +28,7 @@ export class Init {
 }
 
 export function Init_$reflection() {
-    return class_type("ARCtrl.Contract.Git.Init", void 0, Init);
+    return class_type("ARCtrl.Contract.Git.Init", undefined, Init);
 }
 
 export class Clone {
@@ -37,7 +37,7 @@ export class Clone {
 }
 
 export function Clone_$reflection() {
-    return class_type("ARCtrl.Contract.Git.Clone", void 0, Clone);
+    return class_type("ARCtrl.Contract.Git.Clone", undefined, Clone);
 }
 
 export function Init_get_init() {

package/Contract/ValidationPackagesConfig.js

@@ -1,12 +1,12 @@
 import { combineMany } from "../FileSystem/Path.js";
 import { Contract } from "./Contract.js";
-import { item, equalsWith } from "../fable_modules/fable-library-js.4.16.0/Array.js";
-import { defaultOf } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { item, equalsWith } from "../fable_modules/fable-library-js.4.22.0/Array.js";
+import { defaultOf } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 import { ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_fromYamlString_Static_Z721C83C5, ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_toYamlString_Static_71136F3F } from "../Yaml/ValidationPackagesConfig.js";
 
 export const ValidationPackagesConfigHelper_ConfigFilePath = combineMany([".arc", "validation_packages.yml"]);
 
-export const ValidationPackagesConfigHelper_ReadContract = new Contract("READ", ValidationPackagesConfigHelper_ConfigFilePath, "YAML", void 0);
+export const ValidationPackagesConfigHelper_ReadContract = new Contract("READ", ValidationPackagesConfigHelper_ConfigFilePath, "YAML", undefined);
 
 export function ValidationPackagesConfigExtensions_$007CValidationPackagesYamlPath$007C_$007C(input) {
     let matchResult;
@@ -30,7 +30,7 @@ export function ValidationPackagesConfigExtensions_$007CValidationPackagesYamlPa
         case 0:
             return combineMany(input);
         default:
-            return void 0;
+            return undefined;
     }
 }
 
@@ -90,7 +90,7 @@ export function ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPa
         case 0:
             return ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_fromYamlString_Static_Z721C83C5(yaml_1);
         default:
-            return void 0;
+            return undefined;
     }
 }
 

package/Core/ArcTypes.js

@@ -1,17 +1,17 @@
-import { value as value_4, defaultArg, map, unwrap } from "../fable_modules/fable-library-js.4.16.0/Option.js";
-import { collect, append as append_3, tryFind, removeAt, iterate, tryFindIndex, exists, choose, item, map as map_1, delay, toList, fold, length, forAll, contains, filter, toArray } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
-import { defaultOf, safeHash, equals, disposeSafe, getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { value as value_4, defaultArg, map, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { collect, append as append_3, tryFind, removeAt, iterate, tryFindIndex, exists, choose, item, map as map_1, delay, toList, fold, length, forAll, contains, filter, toArray } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { defaultOf, safeHash, equals, disposeSafe, getEnumerator, stringHash } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 import { ResizeArray_choose, ResizeArray_filter, ResizeArray_map } from "./Helper/Collections.js";
 import { DataMap__Copy } from "./DataMap.js";
-import { addRangeInPlace, removeInPlace, contains as contains_1 } from "../fable_modules/fable-library-js.4.16.0/Array.js";
-import { printf, toText } from "../fable_modules/fable-library-js.4.16.0/String.js";
-import { rangeDouble } from "../fable_modules/fable-library-js.4.16.0/Range.js";
+import { addRangeInPlace, removeInPlace, contains as contains_1 } from "../fable_modules/fable-library-js.4.22.0/Array.js";
+import { printf, toText } from "../fable_modules/fable-library-js.4.22.0/String.js";
+import { rangeDouble } from "../fable_modules/fable-library-js.4.22.0/Range.js";
 import { boxHashSeq, boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
 import { checkValidCharacters } from "./Helper/Identifier.js";
 import { ArcTablesAux_applyIOMap, ArcTablesAux_getIOMap, ArcTables_$reflection, ArcTables } from "./Table/ArcTables.js";
-import { class_type } from "../fable_modules/fable-library-js.4.16.0/Reflection.js";
-import { Array_distinct } from "../fable_modules/fable-library-js.4.16.0/Seq2.js";
-import { FSharpRef } from "../fable_modules/fable-library-js.4.16.0/Types.js";
+import { class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
+import { Array_distinct } from "../fable_modules/fable-library-js.4.22.0/Seq2.js";
+import { FSharpRef } from "../fable_modules/fable-library-js.4.22.0/Types.js";
 
 export class ArcAssay extends ArcTables {
     constructor(identifier, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments) {
@@ -20,7 +20,7 @@ export class ArcAssay extends ArcTables {
         const performers_1 = defaultArg(performers, []);
         const comments_1 = defaultArg(comments, []);
         this["identifier@109"] = ((identifier_1 = identifier.trim(), (checkValidCharacters(identifier_1), identifier_1)));
-        this.investigation = void 0;
+        this.investigation = undefined;
         this["measurementType@114"] = measurementType;
         this["technologyType@115"] = technologyType;
         this["technologyPlatform@116"] = technologyPlatform;
@@ -535,7 +535,7 @@ export class ArcAssay extends ArcTables {
     }
     RemoveFromInvestigation() {
         const this$ = this;
-        this$.Investigation = void 0;
+        this$.Investigation = undefined;
     }
     UpdateReferenceByAssayFile(assay, onlyReplaceExisting) {
         const this$ = this;
@@ -606,7 +606,7 @@ export class ArcAssay extends ArcTables {
 }
 
 export function ArcAssay_$reflection() {
-    return class_type("ARCtrl.ArcAssay", void 0, ArcAssay, ArcTables_$reflection());
+    return class_type("ARCtrl.ArcAssay", undefined, ArcAssay, ArcTables_$reflection());
 }
 
 export function ArcAssay_$ctor_Z4900C8CC(identifier, measurementType, technologyType, technologyPlatform, tables, datamap, performers, comments) {
@@ -623,7 +623,7 @@ export class ArcStudy extends ArcTables {
         const registeredAssayIdentifiers_1 = defaultArg(registeredAssayIdentifiers, []);
         const comments_1 = defaultArg(comments, []);
         this["identifier@536"] = ((identifier_1 = identifier.trim(), (checkValidCharacters(identifier_1), identifier_1)));
-        this.investigation = void 0;
+        this.investigation = undefined;
         this["title@541"] = title;
         this["description@542"] = description;
         this["submissionDate@543"] = submissionDate;
@@ -751,7 +751,7 @@ export class ArcStudy extends ArcTables {
     }
     get isEmpty() {
         const this$ = this;
-        return ((((((((equals(this$.Title, void 0) && equals(this$.Description, void 0)) && equals(this$.SubmissionDate, void 0)) && equals(this$.PublicReleaseDate, void 0)) && (this$.Publications.length === 0)) && (this$.Contacts.length === 0)) && (this$.StudyDesignDescriptors.length === 0)) && (this$.Tables.length === 0)) && (this$.RegisteredAssayIdentifiers.length === 0)) && (this$.Comments.length === 0);
+        return ((((((((equals(this$.Title, undefined) && equals(this$.Description, undefined)) && equals(this$.SubmissionDate, undefined)) && equals(this$.PublicReleaseDate, undefined)) && (this$.Publications.length === 0)) && (this$.Contacts.length === 0)) && (this$.StudyDesignDescriptors.length === 0)) && (this$.Tables.length === 0)) && (this$.RegisteredAssayIdentifiers.length === 0)) && (this$.Comments.length === 0);
     }
     static get FileName() {
         return "isa.study.xlsx";
@@ -1131,7 +1131,7 @@ export class ArcStudy extends ArcTables {
     }
     RemoveFromInvestigation() {
         const this$ = this;
-        this$.Investigation = void 0;
+        this$.Investigation = undefined;
     }
     Copy(copyInvestigationRef) {
         const this$ = this;
@@ -1284,7 +1284,7 @@ export class ArcStudy extends ArcTables {
 }
 
 export function ArcStudy_$reflection() {
-    return class_type("ARCtrl.ArcStudy", void 0, ArcStudy, ArcTables_$reflection());
+    return class_type("ARCtrl.ArcStudy", undefined, ArcStudy, ArcTables_$reflection());
 }
 
 export function ArcStudy_$ctor_64321D5B(identifier, title, description, submissionDate, publicReleaseDate, publications, contacts, studyDesignDescriptors, tables, datamap, registeredAssayIdentifiers, comments) {
@@ -2257,7 +2257,7 @@ export class ArcInvestigation {
 }
 
 export function ArcInvestigation_$reflection() {
-    return class_type("ARCtrl.ArcInvestigation", void 0, ArcInvestigation);
+    return class_type("ARCtrl.ArcInvestigation", undefined, ArcInvestigation);
 }
 
 export function ArcInvestigation_$ctor_Z2ED5C612(identifier, title, description, submissionDate, publicReleaseDate, ontologySourceReferences, publications, contacts, assays, studies, registeredStudyIdentifiers, comments, remarks) {

package/Core/Comment.js

@@ -1,11 +1,13 @@
-import { map as map_1, defaultArg, unwrap } from "../fable_modules/fable-library-js.4.16.0/Option.js";
-import { equals } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { map as map_1, defaultArg, unwrap } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { equals } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 import { boxHashOption, boxHashArray } from "./Helper/HashCodes.js";
-import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../fable_modules/fable-library-js.4.16.0/System.Text.js";
-import { printf, toText, join } from "../fable_modules/fable-library-js.4.16.0/String.js";
-import { ofArray, choose, map } from "../fable_modules/fable-library-js.4.16.0/List.js";
-import { Record, toString } from "../fable_modules/fable-library-js.4.16.0/Types.js";
-import { record_type, string_type, int32_type, class_type } from "../fable_modules/fable-library-js.4.16.0/Reflection.js";
+import { StringBuilder__Append_Z721C83C5, StringBuilder_$ctor } from "../fable_modules/fable-library-js.4.22.0/System.Text.js";
+import { replace, printf, toText, join } from "../fable_modules/fable-library-js.4.22.0/String.js";
+import { ofArray, choose, map } from "../fable_modules/fable-library-js.4.22.0/List.js";
+import { Record, toString } from "../fable_modules/fable-library-js.4.22.0/Types.js";
+import { create, match } from "../fable_modules/fable-library-js.4.22.0/RegExp.js";
+import { Pattern_handleGroupPatterns } from "./Helper/Regex.js";
+import { record_type, string_type, int32_type, class_type } from "../fable_modules/fable-library-js.4.22.0/Reflection.js";
 
 export class Comment$ {
     constructor(name, value) {
@@ -56,14 +58,19 @@ export class Comment$ {
         const this$ = this;
         const sb = StringBuilder_$ctor();
         StringBuilder__Append_Z721C83C5(sb, "Comment {");
-        StringBuilder__Append_Z721C83C5(sb, join(", ", map((tupledArg_1) => toText(printf("%s = %A"))(tupledArg_1[0])(tupledArg_1[1]), choose((tupledArg) => map_1((o) => [tupledArg[0], o], tupledArg[1]), ofArray([["Name", this$.Name], ["Value", this$.Value]])))));
+        StringBuilder__Append_Z721C83C5(sb, join(", ", map((tupledArg_1) => toText(printf("%s = \"%s\""))(tupledArg_1[0])(tupledArg_1[1]), choose((tupledArg) => map_1((o) => [tupledArg[0], o], tupledArg[1]), ofArray([["Name", this$.Name], ["Value", this$.Value]])))));
         StringBuilder__Append_Z721C83C5(sb, "}");
         return toString(sb);
     }
+    static fromString(s) {
+        const nameResult = match(create(Pattern_handleGroupPatterns("Name = \"[^\"]*\"")), s);
+        const valueResult = match(create(Pattern_handleGroupPatterns("Value = \"[^\"]*\"")), s);
+        return new Comment$(unwrap((nameResult != null) ? replace(replace(nameResult[0], "Name = ", ""), "\"", "") : undefined), unwrap((valueResult != null) ? replace(replace(valueResult[0], "Value = ", ""), "\"", "") : undefined));
+    }
 }
 
 export function Comment$_$reflection() {
-    return class_type("ARCtrl.Comment", void 0, Comment$);
+    return class_type("ARCtrl.Comment", undefined, Comment$);
 }
 
 export function Comment_$ctor_40457300(name, value) {

package/Core/CommentList.js

@@ -1,8 +1,8 @@
-import { exists, tryPick } from "../fable_modules/fable-library-js.4.16.0/Seq.js";
-import { value } from "../fable_modules/fable-library-js.4.16.0/Option.js";
-import { ofSeq } from "../fable_modules/fable-library-js.4.16.0/Map.js";
+import { exists, tryPick } from "../fable_modules/fable-library-js.4.22.0/Seq.js";
+import { value } from "../fable_modules/fable-library-js.4.22.0/Option.js";
+import { ofSeq } from "../fable_modules/fable-library-js.4.22.0/Map.js";
 import { ResizeArray_filter, ResizeArray_appendSingleton, ResizeArray_map, ResizeArray_choose } from "./Helper/Collections.js";
-import { equals, comparePrimitives } from "../fable_modules/fable-library-js.4.16.0/Util.js";
+import { equals, comparePrimitives } from "../fable_modules/fable-library-js.4.22.0/Util.js";
 
 /**
  * If a comment with the given key exists in the [], return its value, else return None
@@ -27,7 +27,7 @@ export function tryItem(key, comments) {
             case 0:
                 return c.Value;
             default:
-                return void 0;
+                return undefined;
         }
     }, comments);
 }
@@ -77,7 +77,7 @@ export function toMap(comments) {
             return [matchValue, c.Value];
         }
         else {
-            return void 0;
+            return undefined;
         }
     }, comments), {
         Compare: comparePrimitives,