@nfdi4plants/arctrl 2.0.0-alpha.6 → 2.0.0-alpha.8

package/Json/Process/Data.js

@@ -6,13 +6,14 @@ import { DataFile_ROCrate_decoder, DataFile_ROCrate_encoder, DataFile_ISAJson_de
 import { Comment_ISAJson_decoder, Comment_ISAJson_encoder, Comment_ROCrate_decoder, Comment_ROCrate_encoder, Comment_decoder, Comment_encoder } from "../Comment.js";
 import { string, object } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
 import { Data } from "../../Core/Data.js";
-import { unwrap } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
+import { defaultArg, unwrap } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
 import { Decode_objectNoAdditionalProperties, Decode_resizeArray, Decode_uri } from "../Decode.js";
 import { decodeString, encodeString } from "../StringTable.js";
 import { printf, toText, replace } from "../../fable_modules/fable-library-js.4.16.0/String.js";
 import { URIModule_toString } from "../../Core/URI.js";
 import { list as list_1 } from "../../fable_modules/Thoth.Json.Core.0.2.1/Encode.fs.js";
 import { context_jsonvalue } from "../context/rocrate/isa_data_context.js";
+import { encode } from "../IDTable.js";
 import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
 import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
 
@@ -85,8 +86,8 @@ export const Data_ROCrate_decoder = object((get$) => {
     return new Data(unwrap((objectArg = get$.Optional, objectArg.Field("@id", Decode_uri))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("name", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("type", DataFile_ROCrate_decoder))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("encodingFormat", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("usageInfo", Decode_uri))), unwrap((arg_11 = Decode_resizeArray(Comment_ROCrate_decoder), (objectArg_5 = get$.Optional, objectArg_5.Field("comments", arg_11)))));
 });
 
-export function Data_ISAJson_encoder(oa) {
-    return new Json(5, [choose((tupledArg) => {
+export function Data_ISAJson_encoder(idMap, oa) {
+    const f = (oa_1) => (new Json(5, [choose((tupledArg) => {
         const v = tupledArg[1];
         if (equals(v, new Json(3, []))) {
             return void 0;
@@ -94,7 +95,13 @@ export function Data_ISAJson_encoder(oa) {
         else {
             return [tupledArg[0], v];
         }
-    }, ofArray([tryInclude("@id", (value) => (new Json(0, [value])), oa.ID), tryInclude("name", (value_2) => (new Json(0, [value_2])), oa.Name), tryInclude("type", DataFile_ISAJson_encoder, oa.DataType), tryIncludeSeq("comments", Comment_ISAJson_encoder, oa.Comments)]))]);
+    }, ofArray([tryInclude("@id", (value) => (new Json(0, [value])), Data_ROCrate_genID(oa_1)), tryInclude("name", (value_2) => (new Json(0, [value_2])), oa_1.Name), tryInclude("type", DataFile_ISAJson_encoder, oa_1.DataType), tryIncludeSeq("comments", (comment) => Comment_ISAJson_encoder(idMap, comment), oa_1.Comments)]))]));
+    if (idMap != null) {
+        return encode(Data_ROCrate_genID, f, oa, idMap);
+    }
+    else {
+        return f(oa);
+    }
 }
 
 export const Data_ISAJson_allowedFields = ofArray(["@id", "name", "type", "comments", "@type", "@context"]);
@@ -114,13 +121,18 @@ export function ARCtrl_Data__Data_fromISAJsonString_Static_Z721C83C5(s) {
     }
 }
 
-export function ARCtrl_Data__Data_toISAJsonString_Static_71136F3F(spaces) {
+export function ARCtrl_Data__Data_toISAJsonString_Static_Z3B036AA(spaces, useIDReferencing) {
+    const idMap = defaultArg(useIDReferencing, false) ? (new Map([])) : void 0;
     return (f) => {
-        const value = Data_ISAJson_encoder(f);
-        return toString(defaultSpaces(spaces), value);
+        const value_1 = Data_ISAJson_encoder(idMap, f);
+        return toString(defaultSpaces(spaces), value_1);
     };
 }
 
+export function ARCtrl_Data__Data_toISAJsonString_Z3B036AA(this$, spaces, useIDReferencing) {
+    return ARCtrl_Data__Data_toISAJsonString_Static_Z3B036AA(unwrap(spaces), unwrap(useIDReferencing))(this$);
+}
+
 export function ARCtrl_Data__Data_fromROCrateJsonString_Static_Z721C83C5(s) {
     const matchValue = fromString(Data_ROCrate_decoder, s);
     if (matchValue.tag === 1) {
@@ -138,3 +150,7 @@ export function ARCtrl_Data__Data_toROCrateJsonString_Static_71136F3F(spaces) {
     };
 }
 
+export function ARCtrl_Data__Data_toROCrateJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_Data__Data_toROCrateJsonString_Static_71136F3F(unwrap(spaces))(this$);
+}
+

package/Json/Process/DataFile.js

@@ -6,6 +6,7 @@ import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Deco
 import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
 import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
 import { defaultSpaces } from "../Encode.js";
+import { unwrap } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
 
 export function DataFile_ROCrate_encoder(value) {
     switch (value.tag) {
@@ -62,6 +63,10 @@ export function ARCtrl_DataFile__DataFile_toISAJsonString_Static_71136F3F(spaces
     };
 }
 
+export function ARCtrl_DataFile__DataFile_ToISAJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_DataFile__DataFile_toISAJsonString_Static_71136F3F(unwrap(spaces))(this$);
+}
+
 export function ARCtrl_DataFile__DataFile_fromROCrateJsonString_Static_Z721C83C5(s) {
     const matchValue = fromString(DataFile_ROCrate_decoder, s);
     if (matchValue.tag === 1) {
@@ -79,3 +84,7 @@ export function ARCtrl_DataFile__DataFile_toROCrateJsonString_Static_71136F3F(sp
     };
 }
 
+export function ARCtrl_DataFile__DataFile_ToROCrateJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_DataFile__DataFile_toROCrateJsonString_Static_71136F3F(unwrap(spaces))(this$);
+}
+

package/Json/Process/Factor.js

@@ -1,10 +1,11 @@
+import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder, OntologyAnnotation_ROCrate_genID } from "../OntologyAnnotation.js";
 import { ofArray, choose } from "../../fable_modules/fable-library-js.4.16.0/List.js";
 import { equals } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
 import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
 import { defaultSpaces, tryIncludeSeq, tryInclude } from "../Encode.js";
-import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from "../OntologyAnnotation.js";
 import { Comment_ISAJson_decoder, Comment_ISAJson_encoder } from "../Comment.js";
-import { defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
+import { unwrap, defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
+import { encode } from "../IDTable.js";
 import { string, object } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
 import { Decode_resizeArray } from "../Decode.js";
 import { Factor } from "../../Core/Process/Factor.js";
@@ -12,8 +13,24 @@ import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Deco
 import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
 import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
 
-export function Factor_ISAJson_encoder(value) {
-    return new Json(5, [choose((tupledArg) => {
+export function Factor_ISAJson_genID(f) {
+    const matchValue = f.Name;
+    if (matchValue == null) {
+        const matchValue_1 = f.FactorType;
+        if (matchValue_1 == null) {
+            return "#EmptyFactor";
+        }
+        else {
+            return `#Factor/${OntologyAnnotation_ROCrate_genID(matchValue_1)}`;
+        }
+    }
+    else {
+        return `#Factor/${matchValue}`;
+    }
+}
+
+export function Factor_ISAJson_encoder(idMap, value) {
+    const f_1 = (value_1) => (new Json(5, [choose((tupledArg) => {
         const v = tupledArg[1];
         if (equals(v, new Json(3, []))) {
             return void 0;
@@ -21,7 +38,13 @@ export function Factor_ISAJson_encoder(value) {
         else {
             return [tupledArg[0], v];
         }
-    }, ofArray([tryInclude("factorName", (value_1) => (new Json(0, [value_1])), value.Name), tryInclude("factorType", OntologyAnnotation_ISAJson_encoder, value.FactorType), tryIncludeSeq("comments", Comment_ISAJson_encoder, defaultArg(value.Comments, []))]))]);
+    }, ofArray([tryInclude("@id", (value_2) => (new Json(0, [value_2])), Factor_ISAJson_genID(value_1)), tryInclude("factorName", (value_4) => (new Json(0, [value_4])), value_1.Name), tryInclude("factorType", (oa) => OntologyAnnotation_ISAJson_encoder(idMap, oa), value_1.FactorType), tryIncludeSeq("comments", (comment) => Comment_ISAJson_encoder(idMap, comment), defaultArg(value_1.Comments, []))]))]));
+    if (idMap != null) {
+        return encode(Factor_ISAJson_genID, f_1, value, idMap);
+    }
+    else {
+        return f_1(value);
+    }
 }
 
 export const Factor_ISAJson_decoder = object((get$) => {
@@ -41,8 +64,12 @@ export function ARCtrl_Process_Factor__Factor_fromISAJsonString_Static_Z721C83C5
 
 export function ARCtrl_Process_Factor__Factor_toISAJsonString_Static_71136F3F(spaces) {
     return (f) => {
-        const value = Factor_ISAJson_encoder(f);
+        const value = Factor_ISAJson_encoder(void 0, f);
         return toString(defaultSpaces(spaces), value);
     };
 }
 
+export function ARCtrl_Process_Factor__Factor_ToISAJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_Process_Factor__Factor_toISAJsonString_Static_71136F3F(unwrap(spaces))(this$);
+}
+

package/Json/Process/FactorValue.js

@@ -1,4 +1,4 @@
-import { decoder as decoder_1, encoder } from "./PropertyValue.js";
+import { genID, decoder as decoder_1, encoder } from "./PropertyValue.js";
 import { FactorValue, FactorValue_createAsPV } from "../../Core/Process/FactorValue.js";
 import { ofArray, choose } from "../../fable_modules/fable-library-js.4.16.0/List.js";
 import { equals } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
@@ -7,18 +7,24 @@ import { defaultSpaces, tryInclude } from "../Encode.js";
 import { Factor_ISAJson_decoder, Factor_ISAJson_encoder } from "./Factor.js";
 import { Value_ISAJson_decoder, Value_ISAJson_encoder } from "./Value.js";
 import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from "../OntologyAnnotation.js";
+import { encode } from "../IDTable.js";
 import { object } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
 import { Decode_uri } from "../Decode.js";
 import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
 import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { unwrap, defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
 import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
 
 export const FactorValue_ROCrate_encoder = encoder;
 
 export const FactorValue_ROCrate_decoder = decoder_1(FactorValue_createAsPV);
 
-export function FactorValue_ISAJson_encoder(fv) {
-    return new Json(5, [choose((tupledArg) => {
+export function FactorValue_ISAJson_genID(fv) {
+    return genID(fv);
+}
+
+export function FactorValue_ISAJson_encoder(idMap, fv) {
+    const f = (fv_1) => (new Json(5, [choose((tupledArg) => {
         const v = tupledArg[1];
         if (equals(v, new Json(3, []))) {
             return void 0;
@@ -26,7 +32,13 @@ export function FactorValue_ISAJson_encoder(fv) {
         else {
             return [tupledArg[0], v];
         }
-    }, ofArray([tryInclude("@id", (value) => (new Json(0, [value])), fv.ID), tryInclude("category", Factor_ISAJson_encoder, fv.Category), tryInclude("value", Value_ISAJson_encoder, fv.Value), tryInclude("unit", OntologyAnnotation_ISAJson_encoder, fv.Unit)]))]);
+    }, ofArray([tryInclude("@id", (value) => (new Json(0, [value])), FactorValue_ISAJson_genID(fv_1)), tryInclude("category", (value_2) => Factor_ISAJson_encoder(idMap, value_2), fv_1.Category), tryInclude("value", (value_3) => Value_ISAJson_encoder(idMap, value_3), fv_1.Value), tryInclude("unit", (oa) => OntologyAnnotation_ISAJson_encoder(idMap, oa), fv_1.Unit)]))]));
+    if (idMap != null) {
+        return encode(FactorValue_ISAJson_genID, f, fv, idMap);
+    }
+    else {
+        return f(fv);
+    }
 }
 
 export const FactorValue_ISAJson_decoder = object((get$) => {
@@ -44,10 +56,15 @@ export function ARCtrl_Process_FactorValue__FactorValue_fromISAJsonString_Static
     }
 }
 
-export function ARCtrl_Process_FactorValue__FactorValue_toISAJsonString_Static_71136F3F(spaces) {
+export function ARCtrl_Process_FactorValue__FactorValue_toISAJsonString_Static_Z3B036AA(spaces, useIDReferencing) {
+    const idMap = defaultArg(useIDReferencing, false) ? (new Map([])) : void 0;
     return (f) => {
-        const value = FactorValue_ISAJson_encoder(f);
+        const value = FactorValue_ISAJson_encoder(idMap, f);
         return toString(defaultSpaces(spaces), value);
     };
 }
 
+export function ARCtrl_Process_FactorValue__FactorValue_ToISAJsonString_Z3B036AA(this$, spaces, useIDReferencing) {
+    return ARCtrl_Process_FactorValue__FactorValue_toISAJsonString_Static_Z3B036AA(unwrap(spaces), unwrap(useIDReferencing))(this$);
+}
+

package/Json/Process/Material.js

@@ -10,7 +10,9 @@ import { context_jsonvalue } from "../context/rocrate/isa_material_context.js";
 import { list as list_2, string, object } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
 import { Decode_objectNoAdditionalProperties, Decode_uri } from "../Decode.js";
 import { Material } from "../../Core/Process/Material.js";
+import { encode } from "../IDTable.js";
 import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
+import { unwrap, defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
 import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
 
 export function Material_ROCrate_genID(m) {
@@ -49,8 +51,8 @@ export const Material_ROCrate_decoder = (() => {
     return decode();
 })();
 
-export function Material_ISAJson_encoder(oa) {
-    return new Json(5, [choose((tupledArg) => {
+export function Material_ISAJson_encoder(idMap, c) {
+    const f = (oa) => (new Json(5, [choose((tupledArg) => {
         const v = tupledArg[1];
         if (equals(v, new Json(3, []))) {
             return void 0;
@@ -58,7 +60,13 @@ export function Material_ISAJson_encoder(oa) {
         else {
             return [tupledArg[0], v];
         }
-    }, ofArray([tryInclude("@id", (value) => (new Json(0, [value])), oa.ID), tryInclude("name", (value_2) => (new Json(0, [value_2])), oa.Name), tryInclude("type", MaterialType_ISAJson_encoder, oa.MaterialType), tryIncludeListOpt("characteristics", MaterialAttributeValue_ISAJson_encoder, oa.Characteristics), tryIncludeListOpt("derivesFrom", Material_ISAJson_encoder, oa.DerivesFrom)]))]);
+    }, ofArray([tryInclude("@id", (value) => (new Json(0, [value])), Material_ROCrate_genID(oa)), tryInclude("name", (value_2) => (new Json(0, [value_2])), oa.Name), tryInclude("type", MaterialType_ISAJson_encoder, oa.MaterialType), tryIncludeListOpt("characteristics", (oa_1) => MaterialAttributeValue_ISAJson_encoder(idMap, oa_1), oa.Characteristics), tryIncludeListOpt("derivesFrom", (c_1) => Material_ISAJson_encoder(idMap, c_1), oa.DerivesFrom)]))]));
+    if (idMap != null) {
+        return encode(Material_ROCrate_genID, f, c, idMap);
+    }
+    else {
+        return f(c);
+    }
 }
 
 export const Material_ISAJson_allowedFields = ofArray(["@id", "@type", "name", "type", "characteristics", "derivesFrom", "@context"]);
@@ -81,13 +89,18 @@ export function ARCtrl_Process_Material__Material_fromISAJsonString_Static_Z721C
     }
 }
 
-export function ARCtrl_Process_Material__Material_toISAJsonString_Static_71136F3F(spaces) {
+export function ARCtrl_Process_Material__Material_toISAJsonString_Static_Z3B036AA(spaces, useIDReferencing) {
+    const idMap = defaultArg(useIDReferencing, false) ? (new Map([])) : void 0;
     return (f) => {
-        const value = Material_ISAJson_encoder(f);
+        const value = Material_ISAJson_encoder(idMap, f);
         return toString(defaultSpaces(spaces), value);
     };
 }
 
+export function ARCtrl_Process_Material__Material_ToISAJsonString_Z3B036AA(this$, spaces, useIDReferencing) {
+    return ARCtrl_Process_Material__Material_toISAJsonString_Static_Z3B036AA(unwrap(spaces), unwrap(useIDReferencing))(this$);
+}
+
 export function ARCtrl_Process_Material__Material_fromROCrateJsonString_Static_Z721C83C5(s) {
     const matchValue = fromString(Material_ROCrate_decoder, s);
     if (matchValue.tag === 1) {
@@ -105,3 +118,7 @@ export function ARCtrl_Process_Material__Material_toROCrateJsonString_Static_711
     };
 }
 
+export function ARCtrl_Process_Material__Material_ToROCrateJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_Process_Material__Material_toROCrateJsonString_Static_71136F3F(unwrap(spaces))(this$);
+}
+

package/Json/Process/MaterialAttribute.js

@@ -1,16 +1,28 @@
-import { singleton, choose } from "../../fable_modules/fable-library-js.4.16.0/List.js";
+import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder, OntologyAnnotation_ROCrate_genID } from "../OntologyAnnotation.js";
+import { ofArray, choose } from "../../fable_modules/fable-library-js.4.16.0/List.js";
 import { equals } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
 import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
 import { defaultSpaces, tryInclude } from "../Encode.js";
-import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from "../OntologyAnnotation.js";
+import { encode } from "../IDTable.js";
 import { object } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
 import { MaterialAttribute } from "../../Core/Process/MaterialAttribute.js";
 import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
 import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { unwrap, defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
 import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
 
-export function MaterialAttribute_ISAJson_encoder(value) {
-    return new Json(5, [choose((tupledArg) => {
+export function MaterialAttribute_ISAJson_genID(m) {
+    const matchValue = m.CharacteristicType;
+    if (matchValue == null) {
+        return "#EmptyFactor";
+    }
+    else {
+        return `#MaterialAttribute/${OntologyAnnotation_ROCrate_genID(matchValue)}`;
+    }
+}
+
+export function MaterialAttribute_ISAJson_encoder(idMap, value) {
+    const f = (value_1) => (new Json(5, [choose((tupledArg) => {
         const v = tupledArg[1];
         if (equals(v, new Json(3, []))) {
             return void 0;
@@ -18,7 +30,13 @@ export function MaterialAttribute_ISAJson_encoder(value) {
         else {
             return [tupledArg[0], v];
         }
-    }, singleton(tryInclude("characteristicType", OntologyAnnotation_ISAJson_encoder, value.CharacteristicType)))]);
+    }, ofArray([tryInclude("@id", (value_2) => (new Json(0, [value_2])), MaterialAttribute_ISAJson_genID(value_1)), tryInclude("characteristicType", (oa) => OntologyAnnotation_ISAJson_encoder(idMap, oa), value_1.CharacteristicType)]))]));
+    if (idMap != null) {
+        return encode(MaterialAttribute_ISAJson_genID, f, value, idMap);
+    }
+    else {
+        return f(value);
+    }
 }
 
 export const MaterialAttribute_ISAJson_decoder = object((get$) => {
@@ -36,10 +54,15 @@ export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_fromISAJsonS
     }
 }
 
-export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_toISAJsonString_Static_71136F3F(spaces) {
+export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_toISAJsonString_Static_Z3B036AA(spaces, useIDReferencing) {
+    const idMap = defaultArg(useIDReferencing, false) ? (new Map([])) : void 0;
     return (v) => {
-        const value = MaterialAttribute_ISAJson_encoder(v);
+        const value = MaterialAttribute_ISAJson_encoder(idMap, v);
         return toString(defaultSpaces(spaces), value);
     };
 }
 
+export function ARCtrl_Process_MaterialAttribute__MaterialAttribute_ToJsonString_Z3B036AA(this$, spaces, useIDReferencing) {
+    return ARCtrl_Process_MaterialAttribute__MaterialAttribute_toISAJsonString_Static_Z3B036AA(unwrap(spaces), unwrap(useIDReferencing))(this$);
+}
+

package/Json/Process/MaterialAttributeValue.js

@@ -1,4 +1,4 @@
-import { decoder as decoder_1, encoder } from "./PropertyValue.js";
+import { genID, decoder as decoder_1, encoder } from "./PropertyValue.js";
 import { MaterialAttributeValue, MaterialAttributeValue_createAsPV } from "../../Core/Process/MaterialAttributeValue.js";
 import { ofArray, choose } from "../../fable_modules/fable-library-js.4.16.0/List.js";
 import { equals } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
@@ -7,18 +7,24 @@ import { defaultSpaces, tryInclude } from "../Encode.js";
 import { MaterialAttribute_ISAJson_decoder, MaterialAttribute_ISAJson_encoder } from "./MaterialAttribute.js";
 import { Value_ISAJson_decoder, Value_ISAJson_encoder } from "./Value.js";
 import { OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder } from "../OntologyAnnotation.js";
+import { encode } from "../IDTable.js";
 import { object } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
 import { Decode_uri } from "../Decode.js";
 import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
 import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { unwrap, defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
 import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
 
 export const MaterialAttributeValue_ROCrate_encoder = encoder;
 
 export const MaterialAttributeValue_ROCrate_decoder = decoder_1(MaterialAttributeValue_createAsPV);
 
-export function MaterialAttributeValue_ISAJson_encoder(oa) {
-    return new Json(5, [choose((tupledArg) => {
+export function MaterialAttributeValue_ISAJson_genID(oa) {
+    return genID(oa);
+}
+
+export function MaterialAttributeValue_ISAJson_encoder(idMap, oa) {
+    const f = (oa_1) => (new Json(5, [choose((tupledArg) => {
         const v = tupledArg[1];
         if (equals(v, new Json(3, []))) {
             return void 0;
@@ -26,7 +32,13 @@ export function MaterialAttributeValue_ISAJson_encoder(oa) {
         else {
             return [tupledArg[0], v];
         }
-    }, ofArray([tryInclude("@id", (value) => (new Json(0, [value])), oa.ID), tryInclude("category", MaterialAttribute_ISAJson_encoder, oa.Category), tryInclude("value", Value_ISAJson_encoder, oa.Value), tryInclude("unit", OntologyAnnotation_ISAJson_encoder, oa.Unit)]))]);
+    }, ofArray([tryInclude("@id", (value) => (new Json(0, [value])), MaterialAttributeValue_ISAJson_genID(oa_1)), tryInclude("category", (value_2) => MaterialAttribute_ISAJson_encoder(idMap, value_2), oa_1.Category), tryInclude("value", (value_3) => Value_ISAJson_encoder(idMap, value_3), oa_1.Value), tryInclude("unit", (oa_3) => OntologyAnnotation_ISAJson_encoder(idMap, oa_3), oa_1.Unit)]))]));
+    if (idMap != null) {
+        return encode(MaterialAttributeValue_ISAJson_genID, f, oa, idMap);
+    }
+    else {
+        return f(oa);
+    }
 }
 
 export const MaterialAttributeValue_ISAJson_decoder = object((get$) => {
@@ -44,13 +56,18 @@ export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_fr
     }
 }
 
-export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_toISAJsonString_Static_71136F3F(spaces) {
+export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_toISAJsonString_Static_Z3B036AA(spaces, useIDReferencing) {
+    const idMap = defaultArg(useIDReferencing, false) ? (new Map([])) : void 0;
     return (f) => {
-        const value = MaterialAttributeValue_ISAJson_encoder(f);
+        const value = MaterialAttributeValue_ISAJson_encoder(idMap, f);
         return toString(defaultSpaces(spaces), value);
     };
 }
 
+export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_ToISAJsonString_Z3B036AA(this$, spaces, useIDReferencing) {
+    return ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_toISAJsonString_Static_Z3B036AA(unwrap(spaces), unwrap(useIDReferencing))(this$);
+}
+
 export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_fromROCrateJsonString_Static_Z721C83C5(s) {
     const matchValue = fromString(MaterialAttributeValue_ROCrate_decoder, s);
     if (matchValue.tag === 1) {
@@ -68,3 +85,7 @@ export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_to
     };
 }
 
+export function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_ToROCrateJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_toROCrateJsonString_Static_71136F3F(unwrap(spaces))(this$);
+}
+

package/Json/Process/MaterialType.js

@@ -6,6 +6,7 @@ import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Deco
 import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
 import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
 import { defaultSpaces } from "../Encode.js";
+import { unwrap } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
 
 export function MaterialType_ROCrate_encoder(value) {
     if (value.tag === 1) {
@@ -58,3 +59,7 @@ export function ARCtrl_Process_MaterialType__MaterialType_toISAJsonString_Static
     };
 }
 
+export function ARCtrl_Process_MaterialType__MaterialType_ToISAJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_Process_MaterialType__MaterialType_toISAJsonString_Static_71136F3F(unwrap(spaces))(this$);
+}
+

package/Json/Process/Process.js

@@ -15,7 +15,9 @@ import { context_jsonvalue } from "../context/rocrate/isa_process_context.js";
 import { list as list_2, string, object } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
 import { Decode_uri } from "../Decode.js";
 import { Process } from "../../Core/Process/Process.js";
+import { encode } from "../IDTable.js";
 import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
+import { unwrap, defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
 import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
 
 export function Process_ROCrate_genID(p) {
@@ -51,8 +53,8 @@ export const Process_ROCrate_decoder = object((get$) => {
     return new Process((objectArg = get$.Optional, objectArg.Field("@id", Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", string)), (objectArg_2 = get$.Optional, objectArg_2.Field("executesProtocol", Protocol_ROCrate_decoder)), (arg_7 = list_2(ProcessParameterValue_ROCrate_decoder), (objectArg_3 = get$.Optional, objectArg_3.Field("parameterValues", arg_7))), (objectArg_4 = get$.Optional, objectArg_4.Field("performer", Person_ROCrate_decodeAuthorListString)), (objectArg_5 = get$.Optional, objectArg_5.Field("date", string)), void 0, void 0, (arg_13 = list_2(ProcessInput_ROCrate_decoder), (objectArg_6 = get$.Optional, objectArg_6.Field("inputs", arg_13))), (arg_15 = list_2(ProcessOutput_ROCrate_decoder), (objectArg_7 = get$.Optional, objectArg_7.Field("outputs", arg_15))), (arg_17 = list_2(Comment_ROCrate_decoder), (objectArg_8 = get$.Optional, objectArg_8.Field("comments", arg_17))));
 });
 
-export function Process_ISAJson_encoder(oa) {
-    return new Json(5, [choose((tupledArg) => {
+export function Process_ISAJson_encoder(studyName, assayName, idMap, oa) {
+    const f = (oa_1) => (new Json(5, [choose((tupledArg) => {
         const v = tupledArg[1];
         if (equals(v, new Json(3, []))) {
             return void 0;
@@ -60,7 +62,13 @@ export function Process_ISAJson_encoder(oa) {
         else {
             return [tupledArg[0], v];
         }
-    }, ofArray([tryInclude("@id", (value) => (new Json(0, [value])), oa.ID), tryInclude("name", (value_2) => (new Json(0, [value_2])), oa.Name), tryInclude("executesProtocol", Protocol_ISAJson_encoder, oa.ExecutesProtocol), tryIncludeListOpt("parameterValues", ProcessParameterValue_ISAJson_encoder, oa.ParameterValues), tryInclude("performer", (value_4) => (new Json(0, [value_4])), oa.Performer), tryInclude("date", (value_6) => (new Json(0, [value_6])), oa.Date), tryInclude("previousProcess", Process_ISAJson_encoder, oa.PreviousProcess), tryInclude("nextProcess", Process_ISAJson_encoder, oa.NextProcess), tryIncludeListOpt("inputs", ProcessInput_ISAJson_encoder, oa.Inputs), tryIncludeListOpt("outputs", ProcessOutput_ISAJson_encoder, oa.Outputs), tryIncludeListOpt("comments", Comment_ISAJson_encoder, oa.Comments)]))]);
+    }, ofArray([tryInclude("@id", (value) => (new Json(0, [value])), Process_ROCrate_genID(oa_1)), tryInclude("name", (value_2) => (new Json(0, [value_2])), oa_1.Name), tryInclude("executesProtocol", (oa_2) => Protocol_ISAJson_encoder(studyName, assayName, oa_1.Name, idMap, oa_2), oa_1.ExecutesProtocol), tryIncludeListOpt("parameterValues", (oa_3) => ProcessParameterValue_ISAJson_encoder(idMap, oa_3), oa_1.ParameterValues), tryInclude("performer", (value_4) => (new Json(0, [value_4])), oa_1.Performer), tryInclude("date", (value_6) => (new Json(0, [value_6])), oa_1.Date), tryInclude("previousProcess", (oa_4) => Process_ISAJson_encoder(studyName, assayName, idMap, oa_4), oa_1.PreviousProcess), tryInclude("nextProcess", (oa_5) => Process_ISAJson_encoder(studyName, assayName, idMap, oa_5), oa_1.NextProcess), tryIncludeListOpt("inputs", (value_8) => ProcessInput_ISAJson_encoder(idMap, value_8), oa_1.Inputs), tryIncludeListOpt("outputs", (value_9) => ProcessOutput_ISAJson_encoder(idMap, value_9), oa_1.Outputs), tryIncludeListOpt("comments", (comment) => Comment_ISAJson_encoder(idMap, comment), oa_1.Comments)]))]));
+    if (idMap != null) {
+        return encode(Process_ROCrate_genID, f, oa, idMap);
+    }
+    else {
+        return f(oa);
+    }
 }
 
 export const Process_ISAJson_decoder = (() => {
@@ -81,13 +89,18 @@ export function ARCtrl_Process_Process__Process_fromISAJsonString_Static_Z721C83
     }
 }
 
-export function ARCtrl_Process_Process__Process_toISAJsonString_Static_71136F3F(spaces) {
+export function ARCtrl_Process_Process__Process_toISAJsonString_Static_Z3B036AA(spaces, useIDReferencing) {
+    const idMap = defaultArg(useIDReferencing, false) ? (new Map([])) : void 0;
     return (f) => {
-        const value = Process_ISAJson_encoder(f);
+        const value = Process_ISAJson_encoder(void 0, void 0, idMap, f);
         return toString(defaultSpaces(spaces), value);
     };
 }
 
+export function ARCtrl_Process_Process__Process_ToISAJsonString_Z3B036AA(this$, spaces, useIDReferencing) {
+    return ARCtrl_Process_Process__Process_toISAJsonString_Static_Z3B036AA(unwrap(spaces), unwrap(useIDReferencing))(this$);
+}
+
 export function ARCtrl_Process_Process__Process_fromROCrateString_Static_Z721C83C5(s) {
     const matchValue = fromString(Process_ROCrate_decoder, s);
     if (matchValue.tag === 1) {
@@ -105,3 +118,7 @@ export function ARCtrl_Process_Process__Process_toROCrateString_Static_39E0BC3F(
     };
 }
 
+export function ARCtrl_Process_Process__Process_ToROCrateString_39E0BC3F(this$, studyName, assayName, spaces) {
+    return ARCtrl_Process_Process__Process_toROCrateString_Static_39E0BC3F(unwrap(studyName), unwrap(assayName), unwrap(spaces))(this$);
+}
+

package/Json/Process/ProcessInput.js

@@ -7,6 +7,7 @@ import { ProcessInput } from "../../Core/Process/ProcessInput.js";
 import { ofArray } from "../../fable_modules/fable-library-js.4.16.0/List.js";
 import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
 import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { unwrap, defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
 import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
 import { defaultSpaces } from "../Encode.js";
 
@@ -25,16 +26,16 @@ export function ProcessInput_ROCrate_encoder(value) {
 
 export const ProcessInput_ROCrate_decoder = oneOf(ofArray([map((Item) => (new ProcessInput(0, [Item])), Source_ROCrate_decoder), map((Item_1) => (new ProcessInput(1, [Item_1])), Sample_ROCrate_decoder), map((Item_2) => (new ProcessInput(2, [Item_2])), Data_ROCrate_decoder), map((Item_3) => (new ProcessInput(3, [Item_3])), Material_ROCrate_decoder)]));
 
-export function ProcessInput_ISAJson_encoder(value) {
+export function ProcessInput_ISAJson_encoder(idMap, value) {
     switch (value.tag) {
         case 1:
-            return Sample_ISAJson_encoder(value.fields[0]);
+            return Sample_ISAJson_encoder(idMap, value.fields[0]);
         case 2:
-            return Data_ISAJson_encoder(value.fields[0]);
+            return Data_ISAJson_encoder(idMap, value.fields[0]);
         case 3:
-            return Material_ISAJson_encoder(value.fields[0]);
+            return Material_ISAJson_encoder(idMap, value.fields[0]);
         default:
-            return Source_ISAJson_encoder(value.fields[0]);
+            return Source_ISAJson_encoder(idMap, value.fields[0]);
     }
 }
 
@@ -50,10 +51,15 @@ export function ARCtrl_Process_ProcessInput__ProcessInput_fromISAJsonString_Stat
     }
 }
 
-export function ARCtrl_Process_ProcessInput__ProcessInput_toISAJsonString_Static_71136F3F(spaces) {
+export function ARCtrl_Process_ProcessInput__ProcessInput_toISAJsonString_Static_Z3B036AA(spaces, useIDReferencing) {
+    const idMap = defaultArg(useIDReferencing, false) ? (new Map([])) : void 0;
     return (f) => {
-        const value = ProcessInput_ISAJson_encoder(f);
+        const value = ProcessInput_ISAJson_encoder(idMap, f);
         return toString(defaultSpaces(spaces), value);
     };
 }
 
+export function ARCtrl_Process_ProcessInput__ProcessInput_ToISAJsonString_Z3B036AA(this$, spaces, useIDReferencing) {
+    return ARCtrl_Process_ProcessInput__ProcessInput_toISAJsonString_Static_Z3B036AA(unwrap(spaces), unwrap(useIDReferencing))(this$);
+}
+

package/Json/Process/ProcessOutput.js

@@ -6,6 +6,7 @@ import { ProcessOutput } from "../../Core/Process/ProcessOutput.js";
 import { ofArray } from "../../fable_modules/fable-library-js.4.16.0/List.js";
 import { fromString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Decode.fs.js";
 import { printf, toText } from "../../fable_modules/fable-library-js.4.16.0/String.js";
+import { unwrap, defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
 import { toString } from "../../fable_modules/Thoth.Json.JavaScript.0.1.0/Encode.fs.js";
 import { defaultSpaces } from "../Encode.js";
 
@@ -22,14 +23,14 @@ export function ProcessOutput_ROCrate_encoder(value) {
 
 export const ProcessOutput_ROCrate_decoder = oneOf(ofArray([map((Item) => (new ProcessOutput(0, [Item])), Sample_ROCrate_decoder), map((Item_1) => (new ProcessOutput(1, [Item_1])), Data_ROCrate_decoder), map((Item_2) => (new ProcessOutput(2, [Item_2])), Material_ROCrate_decoder)]));
 
-export function ProcessOutput_ISAJson_encoder(value) {
+export function ProcessOutput_ISAJson_encoder(idMap, value) {
     switch (value.tag) {
         case 1:
-            return Data_ISAJson_encoder(value.fields[0]);
+            return Data_ISAJson_encoder(idMap, value.fields[0]);
         case 2:
-            return Material_ISAJson_encoder(value.fields[0]);
+            return Material_ISAJson_encoder(idMap, value.fields[0]);
         default:
-            return Sample_ISAJson_encoder(value.fields[0]);
+            return Sample_ISAJson_encoder(idMap, value.fields[0]);
     }
 }
 
@@ -45,13 +46,18 @@ export function ARCtrl_Process_ProcessOutput__ProcessOutput_fromISAJsonString_St
     }
 }
 
-export function ARCtrl_Process_ProcessOutput__ProcessOutput_toISAJsonString_Static_71136F3F(spaces) {
+export function ARCtrl_Process_ProcessOutput__ProcessOutput_toISAJsonString_Static_Z3B036AA(spaces, useIDReferencing) {
+    const idMap = defaultArg(useIDReferencing, false) ? (new Map([])) : void 0;
     return (f) => {
-        const value = ProcessOutput_ISAJson_encoder(f);
+        const value = ProcessOutput_ISAJson_encoder(idMap, f);
         return toString(defaultSpaces(spaces), value);
     };
 }
 
+export function ARCtrl_Process_ProcessOutput__ProcessOutput_toISAJsonString_Z3B036AA(this$, spaces, useIDReferencing) {
+    return ARCtrl_Process_ProcessOutput__ProcessOutput_toISAJsonString_Static_Z3B036AA(unwrap(spaces), unwrap(useIDReferencing))(this$);
+}
+
 export function ARCtrl_Process_ProcessOutput__ProcessOutput_fromROCrateJsonString_Static_Z721C83C5(s) {
     const matchValue = fromString(ProcessOutput_ROCrate_decoder, s);
     if (matchValue.tag === 1) {
@@ -69,3 +75,7 @@ export function ARCtrl_Process_ProcessOutput__ProcessOutput_toROCrateJsonString_
     };
 }
 
+export function ARCtrl_Process_ProcessOutput__ProcessOutput_toROCrateJsonString_71136F3F(this$, spaces) {
+    return ARCtrl_Process_ProcessOutput__ProcessOutput_toROCrateJsonString_Static_71136F3F(unwrap(spaces))(this$);
+}
+