@nfdi4plants/arctrl 2.0.0-alpha.4 → 2.0.0-alpha.6

package/Core/Table/ArcTable.js

@@ -1,4 +1,4 @@
-import { boxHashValues, Unchecked_alignByHeaders, Unchecked_extendToRowCount, Unchecked_removeRowCells_withIndexChange, Unchecked_addRows, Unchecked_addRow, Unchecked_getEmptyCellForHeader, Unchecked_removeColumnCells_withIndexChange, tryFindDuplicateUniqueInArray, Unchecked_removeColumnCells, Unchecked_removeHeader, Unchecked_fillMissingCells, Unchecked_addColumn, tryFindDuplicateUnique, Unchecked_setCellAt, SanityChecks_validateColumn, SanityChecks_validateRowIndex, SanityChecks_validateColumnIndex, Unchecked_tryGetCellAt, getRowCount, getColumnCount, SanityChecks_validate } from "./ArcTableAux.js";
+import { boxHashValues, Unchecked_alignByHeaders, Unchecked_extendToRowCount, Unchecked_removeRowCells_withIndexChange, Unchecked_addRows, Unchecked_addRow, Unchecked_getEmptyCellForHeader, Unchecked_moveColumnTo, Unchecked_removeColumnCells_withIndexChange, tryFindDuplicateUniqueInArray, Unchecked_removeColumnCells, Unchecked_removeHeader, Unchecked_fillMissingCells, Unchecked_addColumn, tryFindDuplicateUnique, Unchecked_setCellAt, SanityChecks_validateColumn, SanityChecks_validateRowIndex, SanityChecks_validateColumnIndex, Unchecked_tryGetCellAt, getRowCount, getColumnCount, SanityChecks_validate } from "./ArcTableAux.js";
 import { Dictionary } from "../../fable_modules/fable-library-js.4.16.0/MutableMap.js";
 import { compareArrays, safeHash, comparePrimitives, equals, arrayHash, equalArrays } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
 import { value as value_3, map as map_2, unwrap, defaultArg } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
@@ -398,6 +398,27 @@ export class ArcTable {
     static getOutputColumn() {
         return (table) => table.GetOutputColumn();
     }
+    MoveColumn(startCol, endCol) {
+        const this$ = this;
+        if (startCol === endCol) {
+        }
+        else if ((startCol < 0) ? true : (startCol >= this$.ColumnCount)) {
+            toFail(printf("Cannt move column. Invalid start column index: %i"))(startCol);
+        }
+        else if ((endCol < 0) ? true : (endCol >= this$.ColumnCount)) {
+            toFail(printf("Cannt move column. Invalid end column index: %i"))(endCol);
+        }
+        else {
+            Unchecked_moveColumnTo(this$.RowCount, startCol, endCol, this$.Headers, this$.Values);
+        }
+    }
+    static moveColumn(startCol, endCol) {
+        return (table) => {
+            const newTable = table.Copy();
+            newTable.MoveColumn(startCol, endCol);
+            return newTable;
+        };
+    }
     AddRow(cells, index) {
         const this$ = this;
         const index_1 = defaultArg(index, this$.RowCount) | 0;
@@ -713,7 +734,8 @@ export class ArcTable {
     }
     toString() {
         const this$ = this;
-        return join("\n", toList(delay(() => append_1(singleton(`Table: ${this$.Name}`), delay(() => append_1(singleton("-------------"), delay(() => append_1(singleton(join("\t|\t", map(toString, this$.Headers))), delay(() => map((rowI) => join("\t|\t", map(toString, this$.GetRow(rowI))), rangeDouble(0, 1, this$.RowCount - 1)))))))))));
+        const rowCount = this$.RowCount | 0;
+        return join("\n", toList(delay(() => append_1(singleton(`Table: ${this$.Name}`), delay(() => append_1(singleton("-------------"), delay(() => append_1(singleton(join("\t|\t", map(toString, this$.Headers))), delay(() => ((rowCount > 50) ? append_1(map((rowI) => join("\t|\t", map(toString, this$.GetRow(rowI))), rangeDouble(0, 1, 19)), delay(() => append_1(singleton("..."), delay(() => map((rowI_1) => join("\t|\t", map(toString, this$.GetRow(rowI_1))), rangeDouble(rowCount - 20, 1, rowCount - 1)))))) : ((rowCount === 0) ? singleton("No rows") : map((rowI_2) => join("\t|\t", map(toString, this$.GetRow(rowI_2))), rangeDouble(0, 1, rowCount - 1)))))))))))));
     }
     StructurallyEquals(other) {
         let a, b;

package/Core/Table/ArcTableAux.js

@@ -1,4 +1,4 @@
-import { head as head_1, toArray, filter, tryFindIndex, maxBy } from "../../fable_modules/fable-library-js.4.16.0/Seq.js";
+import { toList, head as head_1, toArray, filter, tryFindIndex, maxBy } from "../../fable_modules/fable-library-js.4.16.0/Seq.js";
 import { arrayHash, equalArrays, numberHash, disposeSafe, getEnumerator, compare, equals, safeHash, comparePrimitives } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
 import { addToDict, getItemFromDict } from "../../fable_modules/fable-library-js.4.16.0/MapUtil.js";
 import { value as value_2 } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
@@ -7,11 +7,13 @@ import { printf, toConsole } from "../../fable_modules/fable-library-js.4.16.0/S
 import { List_tryPickAndRemove, Dictionary_tryFind } from "../Helper/Collections.js";
 import { CompositeCell } from "./CompositeCell.js";
 import { max } from "../../fable_modules/fable-library-js.4.16.0/Double.js";
-import { item, map, iterateIndexed } from "../../fable_modules/fable-library-js.4.16.0/Array.js";
+import { setItem, item, map, iterateIndexed } from "../../fable_modules/fable-library-js.4.16.0/Array.js";
 import { tryFind, ofArray } from "../../fable_modules/fable-library-js.4.16.0/Map.js";
 import { Array_groupBy } from "../../fable_modules/fable-library-js.4.16.0/Seq2.js";
 import { FSharpSet__Contains, ofArray as ofArray_1 } from "../../fable_modules/fable-library-js.4.16.0/Set.js";
 import { toString } from "../../fable_modules/fable-library-js.4.16.0/Types.js";
+import { rangeDouble } from "../../fable_modules/fable-library-js.4.16.0/Range.js";
+import { op_UnaryNegation_Int32 } from "../../fable_modules/fable-library-js.4.16.0/Int32.js";
 import { Dictionary } from "../../fable_modules/fable-library-js.4.16.0/MutableMap.js";
 
 export function getColumnCount(headers) {
@@ -472,6 +474,44 @@ export function Unchecked_compositeHeaderMainColumnEqual(ch1, ch2) {
     return toString(ch1) === toString(ch2);
 }
 
+/**
+ * Moves a column from one position to another
+ * 
+ * This function moves the column from `fromCol` to `toCol` and shifts all columns in between accordingly
+ */
+export function Unchecked_moveColumnTo(rowCount, fromCol, toCol, headers, values) {
+    const patternInput = (fromCol < toCol) ? [-1, fromCol + 1, toCol] : [1, fromCol - 1, toCol];
+    const shiftStart = patternInput[1] | 0;
+    const shiftEnd = patternInput[2] | 0;
+    const shift = patternInput[0] | 0;
+    const header = headers[fromCol];
+    const enumerator = getEnumerator(toList(rangeDouble(shiftStart, op_UnaryNegation_Int32(shift), shiftEnd)));
+    try {
+        while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
+            const c = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]() | 0;
+            setItem(headers, c + shift, headers[c]);
+        }
+    }
+    finally {
+        disposeSafe(enumerator);
+    }
+    setItem(headers, toCol, header);
+    for (let r = 0; r <= (rowCount - 1); r++) {
+        const cell = getItemFromDict(values, [fromCol, r]);
+        const enumerator_1 = getEnumerator(toList(rangeDouble(shiftStart, op_UnaryNegation_Int32(shift), shiftEnd)));
+        try {
+            while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
+                const c_1 = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]() | 0;
+                values.set([c_1 + shift, r], getItemFromDict(values, [c_1, r]));
+            }
+        }
+        finally {
+            disposeSafe(enumerator_1);
+        }
+        values.set([toCol, r], cell);
+    }
+}
+
 /**
  * From a list of rows consisting of headers and values, creates a list of combined headers and the values as a sparse matrix
  * 

package/Core/Table/ArcTables.js

@@ -199,7 +199,7 @@ export function ArcTablesAux_SanityChecks_validateNewNamesUnique(newNames, exist
 
 export class ArcTables {
     constructor(initTables) {
-        this.tables = initTables;
+        this.tables = ((ArcTablesAux_SanityChecks_validateNamesUnique(map_1((t) => t.Name, initTables)), initTables));
     }
     get Tables() {
         const this$ = this;

package/Core/Table/CompositeHeader.js

@@ -1,7 +1,7 @@
 import { map } from "../../fable_modules/fable-library-js.4.16.0/Array.js";
 import { union_type, string_type, getUnionCases, name } from "../../fable_modules/fable-library-js.4.16.0/Reflection.js";
 import { Union, toString } from "../../fable_modules/fable-library-js.4.16.0/Types.js";
-import { ActivePatterns_$007CTermColumn$007C_$007C, Pattern_OutputPattern, Pattern_InputPattern, ActivePatterns_$007CRegex$007C_$007C, tryParseIOTypeHeader } from "../Helper/Regex.js";
+import { ActivePatterns_$007CTermColumn$007C_$007C, Pattern_CommentPattern, Pattern_OutputPattern, Pattern_InputPattern, ActivePatterns_$007CRegex$007C_$007C, tryParseIOTypeHeader } from "../Helper/Regex.js";
 import { equals } from "../../fable_modules/fable-library-js.4.16.0/Util.js";
 import { printf, toFail } from "../../fable_modules/fable-library-js.4.16.0/String.js";
 import { OntologyAnnotation_$reflection, OntologyAnnotation } from "../OntologyAnnotation.js";
@@ -199,21 +199,21 @@ export class CompositeHeader extends Union {
         this.fields = fields;
     }
     cases() {
-        return ["Component", "Characteristic", "Factor", "Parameter", "ProtocolType", "ProtocolDescription", "ProtocolUri", "ProtocolVersion", "ProtocolREF", "Performer", "Date", "Input", "Output", "FreeText"];
+        return ["Component", "Characteristic", "Factor", "Parameter", "ProtocolType", "ProtocolDescription", "ProtocolUri", "ProtocolVersion", "ProtocolREF", "Performer", "Date", "Input", "Output", "FreeText", "Comment"];
     }
     static get Cases() {
         return map((x) => [x.tag, name(x)], getUnionCases(CompositeHeader_$reflection()));
     }
     static jsGetColumnMetaType(inp) {
-        return (inp === 0) ? 1 : ((inp === 1) ? 1 : ((inp === 2) ? 1 : ((inp === 3) ? 1 : ((inp === 4) ? 0 : ((inp === 5) ? 0 : ((inp === 6) ? 0 : ((inp === 7) ? 0 : ((inp === 8) ? 0 : ((inp === 9) ? 0 : ((inp === 10) ? 0 : ((inp === 11) ? 2 : ((inp === 12) ? 2 : ((inp === 13) ? 3 : toFail(printf("Cannot assign input `Tag` (%i) to `CompositeHeader`"))(inp))))))))))))));
+        return (inp === 0) ? 1 : ((inp === 1) ? 1 : ((inp === 2) ? 1 : ((inp === 3) ? 1 : ((inp === 4) ? 0 : ((inp === 5) ? 0 : ((inp === 6) ? 0 : ((inp === 7) ? 0 : ((inp === 8) ? 0 : ((inp === 9) ? 0 : ((inp === 10) ? 0 : ((inp === 11) ? 2 : ((inp === 12) ? 2 : ((inp === 13) ? 3 : ((inp === 14) ? 3 : toFail(printf("Cannot assign input `Tag` (%i) to `CompositeHeader`"))(inp)))))))))))))));
     }
     toString() {
         const this$ = this;
-        return (this$.tag === 2) ? (`Factor [${this$.fields[0].NameText}]`) : ((this$.tag === 1) ? (`Characteristic [${this$.fields[0].NameText}]`) : ((this$.tag === 0) ? (`Component [${this$.fields[0].NameText}]`) : ((this$.tag === 4) ? "Protocol Type" : ((this$.tag === 8) ? "Protocol REF" : ((this$.tag === 5) ? "Protocol Description" : ((this$.tag === 6) ? "Protocol Uri" : ((this$.tag === 7) ? "Protocol Version" : ((this$.tag === 9) ? "Performer" : ((this$.tag === 10) ? "Date" : ((this$.tag === 11) ? this$.fields[0].asInput : ((this$.tag === 12) ? this$.fields[0].asOutput : ((this$.tag === 13) ? this$.fields[0] : (`Parameter [${this$.fields[0].NameText}]`)))))))))))));
+        return (this$.tag === 2) ? (`Factor [${this$.fields[0].NameText}]`) : ((this$.tag === 1) ? (`Characteristic [${this$.fields[0].NameText}]`) : ((this$.tag === 0) ? (`Component [${this$.fields[0].NameText}]`) : ((this$.tag === 4) ? "Protocol Type" : ((this$.tag === 8) ? "Protocol REF" : ((this$.tag === 5) ? "Protocol Description" : ((this$.tag === 6) ? "Protocol Uri" : ((this$.tag === 7) ? "Protocol Version" : ((this$.tag === 9) ? "Performer" : ((this$.tag === 10) ? "Date" : ((this$.tag === 11) ? this$.fields[0].asInput : ((this$.tag === 12) ? this$.fields[0].asOutput : ((this$.tag === 14) ? (`Comment [${this$.fields[0]}]`) : ((this$.tag === 13) ? this$.fields[0] : (`Parameter [${this$.fields[0].NameText}]`))))))))))))));
     }
     ToTerm() {
         const this$ = this;
-        return (this$.tag === 2) ? this$.fields[0] : ((this$.tag === 1) ? this$.fields[0] : ((this$.tag === 0) ? this$.fields[0] : ((this$.tag === 4) ? OntologyAnnotation.create(toString(this$), void 0, this$.GetFeaturedColumnAccession) : ((this$.tag === 8) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 5) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 6) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 7) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 9) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 10) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 11) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 12) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 13) ? OntologyAnnotation.create(toString(this$)) : this$.fields[0]))))))))))));
+        return (this$.tag === 2) ? this$.fields[0] : ((this$.tag === 1) ? this$.fields[0] : ((this$.tag === 0) ? this$.fields[0] : ((this$.tag === 4) ? OntologyAnnotation.create(toString(this$), void 0, this$.GetFeaturedColumnAccession) : ((this$.tag === 8) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 5) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 6) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 7) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 9) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 10) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 11) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 12) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 14) ? OntologyAnnotation.create(toString(this$)) : ((this$.tag === 13) ? OntologyAnnotation.create(toString(this$)) : this$.fields[0])))))))))))));
     }
     static OfHeaderString(str) {
         const matchValue = str.trim();
@@ -231,29 +231,36 @@ export class CompositeHeader extends Union {
                 return new CompositeHeader(12, [IOType.ofString(iotype_1)]);
             }
             else {
-                const activePatternResult_2 = ActivePatterns_$007CTermColumn$007C_$007C(matchValue);
+                const activePatternResult_2 = ActivePatterns_$007CRegex$007C_$007C(Pattern_CommentPattern, matchValue);
                 if (activePatternResult_2 != null) {
                     const r_2 = activePatternResult_2;
-                    const matchValue_1 = r_2.TermColumnType;
-                    switch (matchValue_1) {
-                        case "Parameter":
-                        case "Parameter Value":
-                            return new CompositeHeader(3, [OntologyAnnotation.create(r_2.TermName)]);
-                        case "Factor":
-                        case "Factor Value":
-                            return new CompositeHeader(2, [OntologyAnnotation.create(r_2.TermName)]);
-                        case "Characteristic":
-                        case "Characteristics":
-                        case "Characteristics Value":
-                            return new CompositeHeader(1, [OntologyAnnotation.create(r_2.TermName)]);
-                        case "Component":
-                            return new CompositeHeader(0, [OntologyAnnotation.create(r_2.TermName)]);
-                        default:
-                            return new CompositeHeader(13, [str]);
-                    }
+                    return new CompositeHeader(14, [(r_2.groups && r_2.groups.commentKey) || ""]);
                 }
                 else {
-                    return (matchValue === "Date") ? (new CompositeHeader(10, [])) : ((matchValue === "Performer") ? (new CompositeHeader(9, [])) : ((matchValue === "Protocol Description") ? (new CompositeHeader(5, [])) : ((matchValue === "Protocol Uri") ? (new CompositeHeader(6, [])) : ((matchValue === "Protocol Version") ? (new CompositeHeader(7, [])) : ((matchValue === "Protocol Type") ? (new CompositeHeader(4, [])) : ((matchValue === "Protocol REF") ? (new CompositeHeader(8, [])) : (new CompositeHeader(13, [matchValue]))))))));
+                    const activePatternResult_3 = ActivePatterns_$007CTermColumn$007C_$007C(matchValue);
+                    if (activePatternResult_3 != null) {
+                        const r_3 = activePatternResult_3;
+                        const matchValue_1 = r_3.TermColumnType;
+                        switch (matchValue_1) {
+                            case "Parameter":
+                            case "Parameter Value":
+                                return new CompositeHeader(3, [OntologyAnnotation.create(r_3.TermName)]);
+                            case "Factor":
+                            case "Factor Value":
+                                return new CompositeHeader(2, [OntologyAnnotation.create(r_3.TermName)]);
+                            case "Characteristic":
+                            case "Characteristics":
+                            case "Characteristics Value":
+                                return new CompositeHeader(1, [OntologyAnnotation.create(r_3.TermName)]);
+                            case "Component":
+                                return new CompositeHeader(0, [OntologyAnnotation.create(r_3.TermName)]);
+                            default:
+                                return new CompositeHeader(13, [str]);
+                        }
+                    }
+                    else {
+                        return (matchValue === "Date") ? (new CompositeHeader(10, [])) : ((matchValue === "Performer") ? (new CompositeHeader(9, [])) : ((matchValue === "Protocol Description") ? (new CompositeHeader(5, [])) : ((matchValue === "Protocol Uri") ? (new CompositeHeader(6, [])) : ((matchValue === "Protocol Version") ? (new CompositeHeader(7, [])) : ((matchValue === "Protocol Type") ? (new CompositeHeader(4, [])) : ((matchValue === "Protocol REF") ? (new CompositeHeader(8, [])) : (new CompositeHeader(13, [matchValue]))))))));
+                    }
                 }
             }
         }
@@ -395,6 +402,7 @@ export class CompositeHeader extends Union {
             case 13:
             case 11:
             case 12:
+            case 14:
             case 8:
             case 5:
             case 6:
@@ -495,6 +503,10 @@ export class CompositeHeader extends Union {
         const this$ = this;
         return this$.tag === 10;
     }
+    get isComment() {
+        const this$ = this;
+        return this$.tag === 14;
+    }
     get isFreeText() {
         const this$ = this;
         return this$.tag === 13;
@@ -580,9 +592,12 @@ export class CompositeHeader extends Union {
             else if (equals(header, "FreeText")) {
                 matchResult = 13;
             }
-            else {
+            else if (equals(header, "Comment")) {
                 matchResult = 14;
             }
+            else {
+                matchResult = 15;
+            }
         }
         else {
             switch (header.tag) {
@@ -638,6 +653,10 @@ export class CompositeHeader extends Union {
                     matchResult = 13;
                     break;
                 }
+                case 14: {
+                    matchResult = 14;
+                    break;
+                }
                 default:
                     matchResult = 0;
             }
@@ -671,6 +690,8 @@ export class CompositeHeader extends Union {
                 return "Only one output column per table. E.g. experimental samples or files.";
             case 13:
                 return "Placeholder";
+            case 14:
+                return "Comment";
             default:
                 throw new Error(`Unable to parse combination to existing CompositeHeader: \`${header}\``);
         }
@@ -717,9 +738,12 @@ export class CompositeHeader extends Union {
     static freeText(s) {
         return new CompositeHeader(13, [s]);
     }
+    static comment(s) {
+        return new CompositeHeader(14, [s]);
+    }
 }
 
 export function CompositeHeader_$reflection() {
-    return union_type("ARCtrl.CompositeHeader", [], CompositeHeader, () => [[["Item", OntologyAnnotation_$reflection()]], [["Item", OntologyAnnotation_$reflection()]], [["Item", OntologyAnnotation_$reflection()]], [["Item", OntologyAnnotation_$reflection()]], [], [], [], [], [], [], [], [["Item", IOType_$reflection()]], [["Item", IOType_$reflection()]], [["Item", string_type]]]);
+    return union_type("ARCtrl.CompositeHeader", [], CompositeHeader, () => [[["Item", OntologyAnnotation_$reflection()]], [["Item", OntologyAnnotation_$reflection()]], [["Item", OntologyAnnotation_$reflection()]], [["Item", OntologyAnnotation_$reflection()]], [], [], [], [], [], [], [], [["Item", IOType_$reflection()]], [["Item", IOType_$reflection()]], [["Item", string_type]], [["Item", string_type]]]);
 }
 

package/FileSystem/DefaultGitattributes.js

@@ -0,0 +1,3 @@
+
+export const dga = "**/dataset/**";
+

package/Json/Table/CompositeHeader.js

@@ -1,7 +1,7 @@
 import { OntologyAnnotation_decoder, OntologyAnnotation_encoder } from "../OntologyAnnotation.js";
+import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
 import { empty, singleton } from "../../fable_modules/fable-library-js.4.16.0/List.js";
 import { IOType_decoder, IOType_encoder } from "./IOType.js";
-import { Json } from "../../fable_modules/Thoth.Json.Core.0.2.1/Types.fs.js";
 import { list } from "../../fable_modules/Thoth.Json.Core.0.2.1/Encode.fs.js";
 import { index, string, object } from "../../fable_modules/Thoth.Json.Core.0.2.1/Decode.fs.js";
 import { CompositeHeader } from "../../Core/Table/CompositeHeader.js";
@@ -13,11 +13,12 @@ import { unwrap } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
 
 export function CompositeHeader_encoder(ch) {
     const oaToJsonString = OntologyAnnotation_encoder;
-    const patternInput = (ch.tag === 3) ? ["Parameter", singleton(oaToJsonString(ch.fields[0]))] : ((ch.tag === 2) ? ["Factor", singleton(oaToJsonString(ch.fields[0]))] : ((ch.tag === 1) ? ["Characteristic", singleton(oaToJsonString(ch.fields[0]))] : ((ch.tag === 0) ? ["Component", singleton(oaToJsonString(ch.fields[0]))] : ((ch.tag === 4) ? ["ProtocolType", empty()] : ((ch.tag === 8) ? ["ProtocolREF", empty()] : ((ch.tag === 5) ? ["ProtocolDescription", empty()] : ((ch.tag === 6) ? ["ProtocolUri", empty()] : ((ch.tag === 7) ? ["ProtocolVersion", empty()] : ((ch.tag === 9) ? ["Performer", empty()] : ((ch.tag === 10) ? ["Date", empty()] : ((ch.tag === 11) ? ["Input", singleton(IOType_encoder(ch.fields[0]))] : ((ch.tag === 12) ? ["Output", singleton(IOType_encoder(ch.fields[0]))] : [ch.fields[0], empty()]))))))))))));
+    const patternInput = (ch.tag === 14) ? ["Comment", singleton(new Json(0, [ch.fields[0]]))] : ((ch.tag === 3) ? ["Parameter", singleton(oaToJsonString(ch.fields[0]))] : ((ch.tag === 2) ? ["Factor", singleton(oaToJsonString(ch.fields[0]))] : ((ch.tag === 1) ? ["Characteristic", singleton(oaToJsonString(ch.fields[0]))] : ((ch.tag === 0) ? ["Component", singleton(oaToJsonString(ch.fields[0]))] : ((ch.tag === 4) ? ["ProtocolType", empty()] : ((ch.tag === 8) ? ["ProtocolREF", empty()] : ((ch.tag === 5) ? ["ProtocolDescription", empty()] : ((ch.tag === 6) ? ["ProtocolUri", empty()] : ((ch.tag === 7) ? ["ProtocolVersion", empty()] : ((ch.tag === 9) ? ["Performer", empty()] : ((ch.tag === 10) ? ["Date", empty()] : ((ch.tag === 11) ? ["Input", singleton(IOType_encoder(ch.fields[0]))] : ((ch.tag === 12) ? ["Output", singleton(IOType_encoder(ch.fields[0]))] : [ch.fields[0], empty()])))))))))))));
     return new Json(5, [[["headertype", new Json(0, [patternInput[0]])], ["values", list(patternInput[1])]]]);
 }
 
 export const CompositeHeader_decoder = object((get$) => {
+    let arg_7, objectArg_3;
     let headerType;
     const objectArg = get$.Required;
     headerType = objectArg.Field("headertype", string);
@@ -31,7 +32,7 @@ export const CompositeHeader_decoder = object((get$) => {
         const objectArg_2 = get$.Required;
         return objectArg_2.Field("values", arg_5);
     };
-    return (headerType === "Characteristic") ? (new CompositeHeader(1, [oa()])) : ((headerType === "Parameter") ? (new CompositeHeader(3, [oa()])) : ((headerType === "Component") ? (new CompositeHeader(0, [oa()])) : ((headerType === "Factor") ? (new CompositeHeader(2, [oa()])) : ((headerType === "Input") ? (new CompositeHeader(11, [io()])) : ((headerType === "Output") ? (new CompositeHeader(12, [io()])) : ((headerType === "ProtocolType") ? (new CompositeHeader(4, [])) : ((headerType === "ProtocolREF") ? (new CompositeHeader(8, [])) : ((headerType === "ProtocolDescription") ? (new CompositeHeader(5, [])) : ((headerType === "ProtocolUri") ? (new CompositeHeader(6, [])) : ((headerType === "ProtocolVersion") ? (new CompositeHeader(7, [])) : ((headerType === "Performer") ? (new CompositeHeader(9, [])) : ((headerType === "Date") ? (new CompositeHeader(10, [])) : (new CompositeHeader(13, [headerType]))))))))))))));
+    return (headerType === "Characteristic") ? (new CompositeHeader(1, [oa()])) : ((headerType === "Parameter") ? (new CompositeHeader(3, [oa()])) : ((headerType === "Component") ? (new CompositeHeader(0, [oa()])) : ((headerType === "Factor") ? (new CompositeHeader(2, [oa()])) : ((headerType === "Input") ? (new CompositeHeader(11, [io()])) : ((headerType === "Output") ? (new CompositeHeader(12, [io()])) : ((headerType === "ProtocolType") ? (new CompositeHeader(4, [])) : ((headerType === "ProtocolREF") ? (new CompositeHeader(8, [])) : ((headerType === "ProtocolDescription") ? (new CompositeHeader(5, [])) : ((headerType === "ProtocolUri") ? (new CompositeHeader(6, [])) : ((headerType === "ProtocolVersion") ? (new CompositeHeader(7, [])) : ((headerType === "Performer") ? (new CompositeHeader(9, [])) : ((headerType === "Date") ? (new CompositeHeader(10, [])) : ((headerType === "Comment") ? (new CompositeHeader(14, [(arg_7 = index(0, string), (objectArg_3 = get$.Required, objectArg_3.Field("values", arg_7)))])) : (new CompositeHeader(13, [headerType])))))))))))))));
 });
 
 export function ARCtrl_CompositeHeader__CompositeHeader_fromJsonString_Static_Z721C83C5(s) {

package/Spreadsheet/AnnotationTable/ArcTable.js

@@ -48,6 +48,7 @@ export function classifyHeaderOrder(header) {
         case 1:
         case 2:
         case 3:
+        case 14:
         case 13:
             return 3;
         case 12:

package/Spreadsheet/AnnotationTable/CompositeHeader.js

@@ -2,7 +2,7 @@ import { printf, toFail } from "../../fable_modules/fable-library-js.4.16.0/Stri
 import { singleton, ofArray, tryFindIndex, tail, head, isEmpty, map } from "../../fable_modules/fable-library-js.4.16.0/List.js";
 import { OntologyAnnotation } from "../../Core/OntologyAnnotation.js";
 import { freeTextFromFsCells, dataFromFsCells, unitizedFromFsCells, termFromFsCells } from "./CompositeCell.js";
-import { ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CInputColumnHeader$007C_$007C, tryParseComponentColumnHeader, tryParseCharacteristicColumnHeader, tryParseFactorColumnHeader, tryParseParameterColumnHeader, ActivePatterns_$007CTSRColumnHeader$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CUnitColumnHeader$007C_$007C } from "../../Core/Helper/Regex.js";
+import { ActivePatterns_$007CComment$007C_$007C, ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CInputColumnHeader$007C_$007C, tryParseComponentColumnHeader, tryParseCharacteristicColumnHeader, tryParseFactorColumnHeader, tryParseParameterColumnHeader, ActivePatterns_$007CTSRColumnHeader$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CUnitColumnHeader$007C_$007C } from "../../Core/Helper/Regex.js";
 import { IOType, CompositeHeader } from "../../Core/Table/CompositeHeader.js";
 import { map as map_1 } from "../../fable_modules/fable-library-js.4.16.0/Option.js";
 import { FsCell } from "../../fable_modules/FsSpreadsheet.6.1.2/Cells/FsCell.fs.js";
@@ -388,6 +388,35 @@ export function ActivePattern_$007COutput$007C_$007C(cells) {
     }
 }
 
+export function ActivePattern_$007CComment$007C_$007C(cells) {
+    const cellValues = map((c) => c.ValueAsString(), cells);
+    let matchResult, key;
+    if (!isEmpty(cellValues)) {
+        const activePatternResult = ActivePatterns_$007CComment$007C_$007C(head(cellValues));
+        if (activePatternResult != null) {
+            if (isEmpty(tail(cellValues))) {
+                matchResult = 0;
+                key = activePatternResult;
+            }
+            else {
+                matchResult = 1;
+            }
+        }
+        else {
+            matchResult = 1;
+        }
+    }
+    else {
+        matchResult = 1;
+    }
+    switch (matchResult) {
+        case 0:
+            return [new CompositeHeader(14, [key]), freeTextFromFsCells];
+        default:
+            return void 0;
+    }
+}
+
 export function ActivePattern_$007CProtocolType$007C_$007C(cells) {
     const activePatternResult = ActivePattern_$007CTerm$007C_$007C((s) => {
         if (s === "Protocol Type") {
@@ -562,13 +591,20 @@ export function fromFsCells(cells) {
                                     return ph;
                                 }
                                 else {
-                                    const activePatternResult_8 = ActivePattern_$007CFreeText$007C_$007C(cells);
+                                    const activePatternResult_8 = ActivePattern_$007CComment$007C_$007C(cells);
                                     if (activePatternResult_8 != null) {
-                                        const ft = activePatternResult_8;
-                                        return ft;
+                                        const c_2 = activePatternResult_8;
+                                        return c_2;
                                     }
                                     else {
-                                        return toFail(printf("Could not parse header group %O"))(cells);
+                                        const activePatternResult_9 = ActivePattern_$007CFreeText$007C_$007C(cells);
+                                        if (activePatternResult_9 != null) {
+                                            const ft = activePatternResult_9;
+                                            return ft;
+                                        }
+                                        else {
+                                            return toFail(printf("Could not parse header group %O"))(cells);
+                                        }
                                     }
                                 }
                             }

package/fable_modules/project_cracked.json

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@nfdi4plants/arctrl",
-  "version": "2.0.0-alpha.4",
+  "version": "2.0.0-alpha.6",
   "description": "Top level ARC DataModel and API function descriptions.",
   "type": "module",
   "main": "index.js",